The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
122
|
sequence length |
449
|
structure length |
449
|
Chain Sequence |
TLVDTVNASQSRQVFWDEDVYALEIERIFSRAWLMLGHESLVPKPGDFITTYMAEDKVILSHQSDGTFRAFINSCSHRGNQICHADSGNAKAFVCNYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAPSLEDYLGEFRYYLDTIWEGAGGGMELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAALSQIGGELAGLAGNRADIPFDDLGLQFTTRHGHGFGVIDNAAAGLHIKREGWTKFLEDTRGEVRRKFGPERERLYLGHWNCSIFPNCSFLYGTNTFKIWHPRGPHEIEVWTYTIVPRDADPATKSMIQREAIRTFGTAGTLESDDGENMSSATYINRGVITRNGRMNSTMGVGYEGPHPVYPGIVGISFIGETSYRGFYRFWKEMIDAPDWASVKANDDTWDSVFPNRNFWNEKLNAAE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural investigations of the ferredoxin and terminal oxygenase components of the biphenyl 2,3-dioxygenase from Sphingobium yanoikuyae B1.
pubmed doi rcsb |
| molecule keywords |
Biphenyl 2,3-Dioxygenase Alpha Subunit
|
| molecule tags |
Oxidoreductase
|
| source organism |
Sphingobium yanoikuyae
|
| total genus |
122
|
| structure length |
449
|
| sequence length |
449
|
| chains with identical sequence |
C, E
|
| ec nomenclature | |
| pdb deposition date | 2006-03-12 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00355 | Rieske | Rieske [2Fe-2S] domain |
| A | PF00848 | Ring_hydroxyl_A | Ring hydroxylating alpha subunit (catalytic domain) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 3-layer Sandwich | Rieske Iron-sulfur Protein | Rieske [2Fe-2S] iron-sulphur domain | ||
| Alpha Beta | Alpha-Beta Complex | Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 |
#chains in the Genus database with same CATH superfamily 1SJG A; 4NBD D; 4H13 D; 4HM5 A; 1L0L E; 3VMH A; 3L70 E; 2NVF A; 2HMK A; 3BCC E; 3CXH E; 2A06 E; 1NYK A; 3H1I E; 2HMJ A; 1O7H A; 3H1J E; 1KYO E; 2YFL A; 4HM6 A; 3D89 A; 2JZA A; 2BMO A; 3GOB A; 4H0L D; 2DE6 A; 3GCF A; 2DE6 D; 4HM4 A; 1G8J B; 2QJY C; 5KLV E; 1Z03 A; 2QJP C; 4AIV A; 4NBB A; 4U3F E; 2ZT9 D; 4PD4 E; 4HM0 A; 2YFJ A; 2NWF A; 2E75 D; 2XSO A; 3VMI A; 3VMI D; 5BOK A; 3N0Q A; 2E4Q A; 3H1K E; 3GL2 A; 2IBZ E; 4NBE A; 2BCC E; 3GL0 A; 1EG9 A; 4NBE D; 1NTM E; 1G8K B; 4QUQ A; 2BMQ A; 3GB4 A; 1O7W A; 1JM1 A; 4P1B H; 3L73 E; 4HM2 A; 5AEW A; 3VMG A; 2Q3W A; 4H44 D; 2HMO A; 3VMG D; 4AAY B; 2YVJ B; 1SQB E; 1VF5 D; 2E4P A; 3DQY A; 4HJL A; 3C0D A; 4HKV A; 1SQX E; 4NB8 A; 1FQT A; 4NB8 D; 4QDC A; 3GZX A; 4P1C H; 2QPZ A; 1Z02 A; 1WQL A; 2XR8 A; 3EN1 A; 2DE7 A; 2GBX A; 2DE7 D; 4QCK A; 4NBF A; 2D2C D; 4NBF D; 2E76 D; 2B24 A; 1SQQ E; 3L71 E; 3H1L E; 5AEU A; 2NUM A; 1KB9 E; 4QDF B; 4EMJ B; 5KLI C; 1O7G A; 1BE3 E; 3VCA A; 2FYU E; 5HL4 A; 2XSH A; 1ULJ A; 1RFS A; 2JO6 A; 4HM1 A; 2B1X A; 3GKQ A; 2XRX A; 2DE5 A; 4HM7 A; 2DE5 D; 5KKZ C; 2NVE A; 2I7F A; 3L74 E; 4QUR A; 1Z01 A; 4NBG A; 1RIE A; 4NBG D; 3CWB E; 3GCE A; 1UUW A; 3EQQ A; 3AZC A; 2YIU C; 1VCK A; 1EZV E; 1SQV E; 2NUK A; 2HMM A; 2GBW A; 3CX5 E; 3GKE A; 3L72 E; 2E74 D; 3H1H E; 1SQP E; 3VCP A; 3VMH D; 1O7N A; 1NU1 E; 2CKF A; 3GZY A; 4NBA A; 4NBA D; 1NDO A; 1PPJ E; 2HML A; 3GTS A; 1NTZ E; 1O7P A; 4HM8 A; 5CXM A; 1PP9 E; 2QJK C; 1L0N E; 1O7M A; 4OGQ D; 2HMN A; 1ZRT E; 4NBC A; 2YFI A; 3L75 E; 4NBC D; 1NTK E; 2FYN C; 1BCC E; 4QUP A; 1UUV A; 3TGU E; 4NBB D; 4NB9 A; 1VM9 A; 2NVG A; 3GTE A; 4NB9 D; 1Q90 C; 4QDD A; 4PV1 D; 4NBD A; 4HM3 A; 4NBH A; 4NBH D; 3FOU A; 1WW9 A; 2ZYL A; 2BMR A; 1ULI A; 1P84 E; 4QDF A; #chains in the Genus database with same CATH topology 1SJG A; 4NBD D; 4H13 D; 4HM5 A; 1L0L E; 3VMH A; 3L70 E; 2NVF A; 2HMK A; 3BCC E; 3CXH E; 2A06 E; 1NYK A; 3H1I E; 2HMJ A; 1O7H A; 3H1J E; 1KYO E; 2YFL A; 4HM6 A; 3D89 A; 2JZA A; 2BMO A; 3GOB A; 4H0L D; 2DE6 A; 3GCF A; 2DE6 D; 4HM4 A; 1G8J B; 2QJY C; 5KLV E; 1Z03 A; 2QJP C; 4AIV A; 4NBB A; 4U3F E; 2ZT9 D; 4PD4 E; 4HM0 A; 2YFJ A; 2NWF A; 2E75 D; 2XSO A; 3VMI A; 3VMI D; 5BOK A; 3N0Q A; 2E4Q A; 3H1K E; 3GL2 A; 2IBZ E; 4NBE A; 2BCC E; 3GL0 A; 1EG9 A; 4NBE D; 1NTM E; 1G8K B; 4QUQ A; 2BMQ A; 3GB4 A; 1O7W A; 1JM1 A; 4P1B H; 3L73 E; 4HM2 A; 5AEW A; 3VMG A; 2Q3W A; 4H44 D; 2HMO A; 3VMG D; 4AAY B; 2YVJ B; 1SQB E; 1VF5 D; 2E4P A; 3DQY A; 4HJL A; 3C0D A; 4HKV A; 1SQX E; 4NB8 A; 1FQT A; 4NB8 D; 4QDC A; 3GZX A; 4P1C H; 2QPZ A; 1Z02 A; 1WQL A; 2XR8 A; 3EN1 A; 2DE7 A; 2GBX A; 2DE7 D; 4QCK A; 4NBF A; 2D2C D; 4NBF D; 2E76 D; 2B24 A; 1SQQ E; 3L71 E; 3H1L E; 5AEU A; 2NUM A; 1KB9 E; 4QDF B; 4EMJ B; 5KLI C; 1O7G A; 1BE3 E; 3VCA A; 2FYU E; 5HL4 A; 2XSH A; 1ULJ A; 1RFS A; 2JO6 A; 4HM1 A; 2B1X A; 3GKQ A; 2XRX A; 2DE5 A; 4HM7 A; 2DE5 D; 5KKZ C; 2NVE A; 2I7F A; 3L74 E; 4QUR A; 1Z01 A; 4NBG A; 1RIE A; 4NBG D; 3CWB E; 3GCE A; 1UUW A; 3EQQ A; 3AZC A; 2YIU C; 1VCK A; 1EZV E; 1SQV E; 2NUK A; 2HMM A; 2GBW A; 3CX5 E; 3GKE A; 3L72 E; 2E74 D; 3H1H E; 1SQP E; 3VCP A; 3VMH D; 1O7N A; 1NU1 E; 2CKF A; 3GZY A; 4NBA A; 4NBA D; 1NDO A; 1PPJ E; 2HML A; 3GTS A; 1NTZ E; 1O7P A; 4HM8 A; 5CXM A; 1PP9 E; 2QJK C; 1L0N E; 1O7M A; 4OGQ D; 2HMN A; 1ZRT E; 4NBC A; 2YFI A; 3L75 E; 4NBC D; 1NTK E; 2FYN C; 1BCC E; 4QUP A; 1UUV A; 3TGU E; 4NBB D; 4NB9 A; 1VM9 A; 2NVG A; 3GTE A; 4NB9 D; 1Q90 C; 4QDD A; 4PV1 D; 4NBD A; 4HM3 A; 4NBH A; 4NBH D; 3FOU A; 1WW9 A; 2ZYL A; 2BMR A; 1ULI A; 1P84 E; 4QDF A; #chains in the Genus database with same CATH homology 1SJG A; 4NBD D; 4H13 D; 4HM5 A; 1L0L E; 3VMH A; 3L70 E; 2NVF A; 2HMK A; 3BCC E; 3CXH E; 2A06 E; 1NYK A; 3H1I E; 2HMJ A; 1O7H A; 3H1J E; 1KYO E; 2YFL A; 4HM6 A; 3D89 A; 2JZA A; 2BMO A; 3GOB A; 4H0L D; 2DE6 A; 3GCF A; 2DE6 D; 4HM4 A; 1G8J B; 2QJY C; 5KLV E; 1Z03 A; 2QJP C; 4AIV A; 4NBB A; 4U3F E; 2ZT9 D; 4PD4 E; 4HM0 A; 2YFJ A; 2NWF A; 2E75 D; 2XSO A; 3VMI A; 3VMI D; 5BOK A; 3N0Q A; 2E4Q A; 3H1K E; 3GL2 A; 2IBZ E; 4NBE A; 2BCC E; 3GL0 A; 1EG9 A; 4NBE D; 1NTM E; 1G8K B; 4QUQ A; 2BMQ A; 3GB4 A; 1O7W A; 1JM1 A; 4P1B H; 3L73 E; 4HM2 A; 5AEW A; 3VMG A; 2Q3W A; 4H44 D; 2HMO A; 3VMG D; 4AAY B; 2YVJ B; 1SQB E; 1VF5 D; 2E4P A; 3DQY A; 4HJL A; 3C0D A; 4HKV A; 1SQX E; 4NB8 A; 1FQT A; 4NB8 D; 4QDC A; 3GZX A; 4P1C H; 2QPZ A; 1Z02 A; 1WQL A; 2XR8 A; 3EN1 A; 2DE7 A; 2GBX A; 2DE7 D; 4QCK A; 4NBF A; 2D2C D; 4NBF D; 2E76 D; 2B24 A; 1SQQ E; 3L71 E; 3H1L E; 5AEU A; 2NUM A; 1KB9 E; 4QDF B; 4EMJ B; 5KLI C; 1O7G A; 1BE3 E; 3VCA A; 2FYU E; 5HL4 A; 2XSH A; 1ULJ A; 1RFS A; 2JO6 A; 4HM1 A; 2B1X A; 3GKQ A; 2XRX A; 2DE5 A; 4HM7 A; 2DE5 D; 5KKZ C; 2NVE A; 2I7F A; 3L74 E; 4QUR A; 1Z01 A; 4NBG A; 1RIE A; 4NBG D; 3CWB E; 3GCE A; 1UUW A; 3EQQ A; 3AZC A; 2YIU C; 1VCK A; 1EZV E; 1SQV E; 2NUK A; 2HMM A; 2GBW A; 3CX5 E; 3GKE A; 3L72 E; 2E74 D; 3H1H E; 1SQP E; 3VCP A; 3VMH D; 1O7N A; 1NU1 E; 2CKF A; 3GZY A; 4NBA A; 4NBA D; 1NDO A; 1PPJ E; 2HML A; 3GTS A; 1NTZ E; 1O7P A; 4HM8 A; 5CXM A; 1PP9 E; 2QJK C; 1L0N E; 1O7M A; 4OGQ D; 2HMN A; 1ZRT E; 4NBC A; 2YFI A; 3L75 E; 4NBC D; 1NTK E; 2FYN C; 1BCC E; 4QUP A; 1UUV A; 3TGU E; 4NBB D; 4NB9 A; 1VM9 A; 2NVG A; 3GTE A; 4NB9 D; 1Q90 C; 4QDD A; 4PV1 D; 4NBD A; 4HM3 A; 4NBH A; 4NBH D; 3FOU A; 1WW9 A; 2ZYL A; 2BMR A; 1ULI A; 1P84 E; 4QDF A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
