4NBFD

Oxygenase with gln282 replaced by asn and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
b'IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Terminal oxygenase component of carbazole
publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 19
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbfD00
3VMGD 5HL4A 2HMLA 1KB9E 3TGUE 2NVGA 2QJKC 2YFJA 3GL0A 3L75E 2CKFA 4H44D 4HM8A 2ZYLA 3L74E 2E4PA 2D2CD 1NTZE 2A06E 1O7GA 2B24A 3DQYA 2IBZE 3C0DA 1O7MA 3FOUA 1NDOA 3GOBA 1SQVE 4H13D 1O7NA 2NUKA 1BE3E 2YIUC 2HMKA 3VMHD 4QUPA 2DE6D 4HJLA 5KLVE 1O7HA 1FQTA 2NVEA 2QJPC 4QUQA 4P1BH 4QDFA 4HKVA 4HM6A 3GB4A 5AEUA 3VCAA 3EN1A 4OGQD 1SQPE 3GTEA 2YFIA 1G8KB 2GBXA 3H1HE 4NBHD 1NTME 1EG9A 2E76D 1PP9E 5CXMA 3CXHE 4NB8D 2FYNC 1SQXE 4NBGD 2DE7D 3GCEA 3GZYA 2YVJB 2BCCE 2B1XA 5BOKA 2NUMA 2HMJA 2JO6A 3H1KE 1G8JB 1VCKA 4PD4E 1Q90C 3H1JE 2XSOA 1BCCE 4AIVA 1VF5D 2E74D 3GZXA 4NBAD 1UUVA 1P84E 1ULJA 2HMMA 2FYUE 2QJYC 1O7WA 3GTSA 4QCKA 4HM2A 1SQQE 3H1LE 1UUWA 3L70E 4PV1D 4QDDA 4HM3A 1WQLA 4HM1A 1ULIA 2HMNA 1NTKE 1L0NE 4NB9D 3N0QA 3GL2A 1NU1E 5AEWA 1PPJE 2QPZA 4U3FE 2GBWA 3AZCA 2BMOA 4HM4A 5KLIC 4QDCA 2I7FA 1SJGA 1NYKA 3H1IE 2XRXA 3L72E 3VMID 1RIEA 2DE5D 4HM0A 2NWFA 5KKZC 4NBED 2E4QA 3EQQA 4P1CH 2BMRA 3VCPA 2NVFA 4QDFB 2YFLA 4H0LD 4EMJB 4NBCD 4AAYB 1SQBE 2ZT9D 4QURA 1ZRTE 1O7PA 2HMOA 2E75D 2Q3WA 3L73E 1KYOE 4HM5A 4NBDD 3CWBE 1JM1A 2JZAA 1RFSA 2XSHA 3BCCE 4NBBD 3D89A 2BMQA 1VM9A 1L0LE 3CX5E 4NBFD 1EZVE 4HM7A 3L71E 2XR8A 3GKEA
chains in the Genus database with same CATH superfamily
3VMGD 5HL4A 2HMLA 1KB9E 3TGUE 2NVGA 2QJKC 2YFJA 3GL0A 3L75E 2CKFA 4H44D 4HM8A 2ZYLA 3L74E 2E4PA 2D2CD 1NTZE 2A06E 1O7GA 2B24A 3DQYA 2IBZE 3C0DA 1O7MA 3FOUA 1NDOA 3GOBA 1SQVE 4H13D 1O7NA 2NUKA 1BE3E 2YIUC 2HMKA 3VMHD 4QUPA 2DE6D 4HJLA 5KLVE 1O7HA 1FQTA 2NVEA 2QJPC 4QUQA 4P1BH 4QDFA 4HKVA 4HM6A 3GB4A 5AEUA 3VCAA 3EN1A 4OGQD 1SQPE 3GTEA 2YFIA 1G8KB 2GBXA 3H1HE 4NBHD 1NTME 1EG9A 2E76D 1PP9E 5CXMA 3CXHE 4NB8D 2FYNC 1SQXE 4NBGD 2DE7D 3GCEA 3GZYA 2YVJB 2BCCE 2B1XA 5BOKA 2NUMA 2HMJA 2JO6A 3H1KE 1G8JB 1VCKA 4PD4E 1Q90C 3H1JE 2XSOA 1BCCE 4AIVA 1VF5D 2E74D 3GZXA 4NBAD 1UUVA 1P84E 1ULJA 2HMMA 2FYUE 2QJYC 1O7WA 3GTSA 4QCKA 4HM2A 1SQQE 3H1LE 1UUWA 3L70E 4PV1D 4QDDA 4HM3A 1WQLA 4HM1A 1ULIA 2HMNA 1NTKE 1L0NE 4NB9D 3N0QA 3GL2A 1NU1E 5AEWA 1PPJE 2QPZA 4U3FE 2GBWA 3AZCA 2BMOA 4HM4A 5KLIC 4QDCA 2I7FA 1SJGA 1NYKA 3H1IE 2XRXA 3L72E 3VMID 1RIEA 2DE5D 4HM0A 2NWFA 5KKZC 4NBED 2E4QA 3EQQA 4P1CH 2BMRA 3VCPA 2NVFA 4QDFB 2YFLA 4H0LD 4EMJB 4NBCD 4AAYB 1SQBE 2ZT9D 4QURA 1ZRTE 1O7PA 2HMOA 2E75D 2Q3WA 3L73E 1KYOE 4HM5A 4NBDD 3CWBE 1JM1A 2JZAA 1RFSA 2XSHA 3BCCE 4NBBD 3D89A 2BMQA 1VM9A 1L0LE 3CX5E 4NBFD 1EZVE 4HM7A 3L71E 2XR8A 3GKEA
chains in the Genus database with same CATH topology
3VMGD 5HL4A 2HMLA 1KB9E 3TGUE 2NVGA 2QJKC 2YFJA 3GL0A 3L75E 2CKFA 4H44D 4HM8A 2ZYLA 3L74E 2E4PA 2D2CD 1NTZE 2A06E 1O7GA 2B24A 3DQYA 2IBZE 3C0DA 1O7MA 3FOUA 1NDOA 3GOBA 1SQVE 4H13D 1O7NA 2NUKA 1BE3E 2YIUC 2HMKA 3VMHD 4QUPA 2DE6D 4HJLA 5KLVE 1O7HA 1FQTA 2NVEA 2QJPC 4QUQA 4P1BH 4QDFA 4HKVA 4HM6A 3GB4A 5AEUA 3VCAA 3EN1A 4OGQD 1SQPE 3GTEA 2YFIA 1G8KB 2GBXA 3H1HE 4NBHD 1NTME 1EG9A 2E76D 1PP9E 5CXMA 3CXHE 4NB8D 2FYNC 1SQXE 4NBGD 2DE7D 3GCEA 3GZYA 2YVJB 2BCCE 2B1XA 5BOKA 2NUMA 2HMJA 2JO6A 3H1KE 1G8JB 1VCKA 4PD4E 1Q90C 3H1JE 2XSOA 1BCCE 4AIVA 1VF5D 2E74D 3GZXA 4NBAD 1UUVA 1P84E 1ULJA 2HMMA 2FYUE 2QJYC 1O7WA 3GTSA 4QCKA 4HM2A 1SQQE 3H1LE 1UUWA 3L70E 4PV1D 4QDDA 4HM3A 1WQLA 4HM1A 1ULIA 2HMNA 1NTKE 1L0NE 4NB9D 3N0QA 3GL2A 1NU1E 5AEWA 1PPJE 2QPZA 4U3FE 2GBWA 3AZCA 2BMOA 4HM4A 5KLIC 4QDCA 2I7FA 1SJGA 1NYKA 3H1IE 2XRXA 3L72E 3VMID 1RIEA 2DE5D 4HM0A 2NWFA 5KKZC 4NBED 2E4QA 3EQQA 4P1CH 2BMRA 3VCPA 2NVFA 4QDFB 2YFLA 4H0LD 4EMJB 4NBCD 4AAYB 1SQBE 2ZT9D 4QURA 1ZRTE 1O7PA 2HMOA 2E75D 2Q3WA 3L73E 1KYOE 4HM5A 4NBDD 3CWBE 1JM1A 2JZAA 1RFSA 2XSHA 3BCCE 4NBBD 3D89A 2BMQA 1VM9A 1L0LE 3CX5E 4NBFD 1EZVE 4HM7A 3L71E 2XR8A 3GKEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VMG D;  5HL4 A;  2HML A;  1KB9 E;  3TGU E;  2NVG A;  2QJK C;  2YFJ A;  3GL0 A;  3L75 E;  2CKF A;  4H44 D;  4HM8 A;  2ZYL A;  3L74 E;  2E4P A;  2D2C D;  1NTZ E;  2A06 E;  1O7G A;  2B24 A;  3DQY A;  2IBZ E;  3C0D A;  1O7M A;  3FOU A;  1NDO A;  3GOB A;  1SQV E;  4H13 D;  1O7N A;  2NUK A;  1BE3 E;  2YIU C;  2HMK A;  3VMH D;  4QUP A;  2DE6 D;  4HJL A;  5KLV E;  1O7H A;  1FQT A;  2NVE A;  2QJP C;  4QUQ A;  4P1B H;  4QDF A;  4HKV A;  4HM6 A;  3GB4 A;  5AEU A;  3VCA A;  3EN1 A;  4OGQ D;  1SQP E;  3GTE A;  2YFI A;  1G8K B;  2GBX A;  3H1H E;  4NBH D;  1NTM E;  1EG9 A;  2E76 D;  1PP9 E;  5CXM A;  3CXH E;  4NB8 D;  2FYN C;  1SQX E;  4NBG D;  2DE7 D;  3GCE A;  3GZY A;  2YVJ B;  2BCC E;  2B1X A;  5BOK A;  2NUM A;  2HMJ A;  2JO6 A;  3H1K E;  1G8J B;  1VCK A;  4PD4 E;  1Q90 C;  3H1J E;  2XSO A;  1BCC E;  4AIV A;  1VF5 D;  2E74 D;  3GZX A;  4NBA D;  1UUV A;  1P84 E;  1ULJ A;  2HMM A;  2FYU E;  2QJY C;  1O7W A;  3GTS A;  4QCK A;  4HM2 A;  1SQQ E;  3H1L E;  1UUW A;  3L70 E;  4PV1 D;  4QDD A;  4HM3 A;  1WQL A;  4HM1 A;  1ULI A;  2HMN A;  1NTK E;  1L0N E;  4NB9 D;  3N0Q A;  3GL2 A;  1NU1 E;  5AEW A;  1PPJ E;  2QPZ A;  4U3F E;  2GBW A;  3AZC A;  2BMO A;  4HM4 A;  5KLI C;  4QDC A;  2I7F A;  1SJG A;  1NYK A;  3H1I E;  2XRX A;  3L72 E;  3VMI D;  1RIE A;  2DE5 D;  4HM0 A;  2NWF A;  5KKZ C;  4NBE D;  2E4Q A;  3EQQ A;  4P1C H;  2BMR A;  3VCP A;  2NVF A;  4QDF B;  2YFL A;  4H0L D;  4EMJ B;  4NBC D;  4AAY B;  1SQB E;  2ZT9 D;  4QUR A;  1ZRT E;  1O7P A;  2HMO A;  2E75 D;  2Q3W A;  3L73 E;  1KYO E;  4HM5 A;  4NBD D;  3CWB E;  1JM1 A;  2JZA A;  1RFS A;  2XSH A;  3BCC E;  4NBB D;  3D89 A;  2BMQ A;  1VM9 A;  1L0L E;  3CX5 E;  4NBF D;  1EZV E;  4HM7 A;  3L71 E;  2XR8 A;  3GKE A; 
#chains in the Genus database with same CATH topology
 3VMG D;  5HL4 A;  2HML A;  1KB9 E;  3TGU E;  2NVG A;  2QJK C;  2YFJ A;  3GL0 A;  3L75 E;  2CKF A;  4H44 D;  4HM8 A;  2ZYL A;  3L74 E;  2E4P A;  2D2C D;  1NTZ E;  2A06 E;  1O7G A;  2B24 A;  3DQY A;  2IBZ E;  3C0D A;  1O7M A;  3FOU A;  1NDO A;  3GOB A;  1SQV E;  4H13 D;  1O7N A;  2NUK A;  1BE3 E;  2YIU C;  2HMK A;  3VMH D;  4QUP A;  2DE6 D;  4HJL A;  5KLV E;  1O7H A;  1FQT A;  2NVE A;  2QJP C;  4QUQ A;  4P1B H;  4QDF A;  4HKV A;  4HM6 A;  3GB4 A;  5AEU A;  3VCA A;  3EN1 A;  4OGQ D;  1SQP E;  3GTE A;  2YFI A;  1G8K B;  2GBX A;  3H1H E;  4NBH D;  1NTM E;  1EG9 A;  2E76 D;  1PP9 E;  5CXM A;  3CXH E;  4NB8 D;  2FYN C;  1SQX E;  4NBG D;  2DE7 D;  3GCE A;  3GZY A;  2YVJ B;  2BCC E;  2B1X A;  5BOK A;  2NUM A;  2HMJ A;  2JO6 A;  3H1K E;  1G8J B;  1VCK A;  4PD4 E;  1Q90 C;  3H1J E;  2XSO A;  1BCC E;  4AIV A;  1VF5 D;  2E74 D;  3GZX A;  4NBA D;  1UUV A;  1P84 E;  1ULJ A;  2HMM A;  2FYU E;  2QJY C;  1O7W A;  3GTS A;  4QCK A;  4HM2 A;  1SQQ E;  3H1L E;  1UUW A;  3L70 E;  4PV1 D;  4QDD A;  4HM3 A;  1WQL A;  4HM1 A;  1ULI A;  2HMN A;  1NTK E;  1L0N E;  4NB9 D;  3N0Q A;  3GL2 A;  1NU1 E;  5AEW A;  1PPJ E;  2QPZ A;  4U3F E;  2GBW A;  3AZC A;  2BMO A;  4HM4 A;  5KLI C;  4QDC A;  2I7F A;  1SJG A;  1NYK A;  3H1I E;  2XRX A;  3L72 E;  3VMI D;  1RIE A;  2DE5 D;  4HM0 A;  2NWF A;  5KKZ C;  4NBE D;  2E4Q A;  3EQQ A;  4P1C H;  2BMR A;  3VCP A;  2NVF A;  4QDF B;  2YFL A;  4H0L D;  4EMJ B;  4NBC D;  4AAY B;  1SQB E;  2ZT9 D;  4QUR A;  1ZRT E;  1O7P A;  2HMO A;  2E75 D;  2Q3W A;  3L73 E;  1KYO E;  4HM5 A;  4NBD D;  3CWB E;  1JM1 A;  2JZA A;  1RFS A;  2XSH A;  3BCC E;  4NBB D;  3D89 A;  2BMQ A;  1VM9 A;  1L0L E;  3CX5 E;  4NBF D;  1EZV E;  4HM7 A;  3L71 E;  2XR8 A;  3GKE A; 
#chains in the Genus database with same CATH homology
 3VMG D;  5HL4 A;  2HML A;  1KB9 E;  3TGU E;  2NVG A;  2QJK C;  2YFJ A;  3GL0 A;  3L75 E;  2CKF A;  4H44 D;  4HM8 A;  2ZYL A;  3L74 E;  2E4P A;  2D2C D;  1NTZ E;  2A06 E;  1O7G A;  2B24 A;  3DQY A;  2IBZ E;  3C0D A;  1O7M A;  3FOU A;  1NDO A;  3GOB A;  1SQV E;  4H13 D;  1O7N A;  2NUK A;  1BE3 E;  2YIU C;  2HMK A;  3VMH D;  4QUP A;  2DE6 D;  4HJL A;  5KLV E;  1O7H A;  1FQT A;  2NVE A;  2QJP C;  4QUQ A;  4P1B H;  4QDF A;  4HKV A;  4HM6 A;  3GB4 A;  5AEU A;  3VCA A;  3EN1 A;  4OGQ D;  1SQP E;  3GTE A;  2YFI A;  1G8K B;  2GBX A;  3H1H E;  4NBH D;  1NTM E;  1EG9 A;  2E76 D;  1PP9 E;  5CXM A;  3CXH E;  4NB8 D;  2FYN C;  1SQX E;  4NBG D;  2DE7 D;  3GCE A;  3GZY A;  2YVJ B;  2BCC E;  2B1X A;  5BOK A;  2NUM A;  2HMJ A;  2JO6 A;  3H1K E;  1G8J B;  1VCK A;  4PD4 E;  1Q90 C;  3H1J E;  2XSO A;  1BCC E;  4AIV A;  1VF5 D;  2E74 D;  3GZX A;  4NBA D;  1UUV A;  1P84 E;  1ULJ A;  2HMM A;  2FYU E;  2QJY C;  1O7W A;  3GTS A;  4QCK A;  4HM2 A;  1SQQ E;  3H1L E;  1UUW A;  3L70 E;  4PV1 D;  4QDD A;  4HM3 A;  1WQL A;  4HM1 A;  1ULI A;  2HMN A;  1NTK E;  1L0N E;  4NB9 D;  3N0Q A;  3GL2 A;  1NU1 E;  5AEW A;  1PPJ E;  2QPZ A;  4U3F E;  2GBW A;  3AZC A;  2BMO A;  4HM4 A;  5KLI C;  4QDC A;  2I7F A;  1SJG A;  1NYK A;  3H1I E;  2XRX A;  3L72 E;  3VMI D;  1RIE A;  2DE5 D;  4HM0 A;  2NWF A;  5KKZ C;  4NBE D;  2E4Q A;  3EQQ A;  4P1C H;  2BMR A;  3VCP A;  2NVF A;  4QDF B;  2YFL A;  4H0L D;  4EMJ B;  4NBC D;  4AAY B;  1SQB E;  2ZT9 D;  4QUR A;  1ZRT E;  1O7P A;  2HMO A;  2E75 D;  2Q3W A;  3L73 E;  1KYO E;  4HM5 A;  4NBD D;  3CWB E;  1JM1 A;  2JZA A;  1RFS A;  2XSH A;  3BCC E;  4NBB D;  3D89 A;  2BMQ A;  1VM9 A;  1L0L E;  3CX5 E;  4NBF D;  1EZV E;  4HM7 A;  3L71 E;  2XR8 A;  3GKE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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