4NBFD

Oxygenase with gln282 replaced by asn and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 19
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Oxidoreductase
molecule keywords Terminal oxygenase component of carbazole
publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
total genus 19
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbfD00
2YIUC 1BCCE 2YFJA 2QJYC 1O7WA 2BMRA 2QJPC 1JM1A 4HM7A 4QDDA 3H1JE 4QUPA 4HM1A 3GB4A 3GTSA 3L72E 2NWFA 5HL4A 4NB9D 3VMHD 2A06E 1G8KB 2E75D 4QDFA 2NVEA 2DE5D 2YFLA 1VM9A 3BCCE 2NUKA 4H0LD 4HJLA 1EG9A 2JO6A 4HM8A 2B24A 2HMNA 2HMMA 3H1IE 3L75E 1G8JB 1RFSA 4H13D 4AAYB 1ULJA 2DE7D 1KB9E 2NVGA 3H1KE 2YVJB 4NB8D 1O7NA 4OGQD 4QURA 4EMJB 3H1HE 2QPZA 3CXHE 3EQQA 5KKZC 4NBHD 4NBDD 1NDOA 3GTEA 4QDFB 1O7HA 1NTKE 4QUQA 2IBZE 4HM0A 4PD4E 2NUMA 1VF5D 4NBED 2XR8A 2BMQA 2D2CD 5KLIC 4AIVA 2DE6D 2ZT9D 3H1LE 3VCPA 3AZCA 1RIEA 2HMKA 3L71E 1SQQE 2XSOA 1PP9E 2XRXA 4NBCD 2B1XA 2YFIA 1UUVA 1SJGA 3FOUA 4HM2A 3GCEA 1PPJE 4HM4A 3VCAA 2HMOA 1SQXE 4HM5A 1VCKA 3GL2A 3C0DA 3EN1A 3GZXA 1NTME 1UUWA 2Q3WA 1FQTA 4P1BH 4NBBD 1BE3E 5AEWA 4HM6A 1Q90C 2QJKC 1ZRTE 3D89A 4NBFD 4NBGD 2E4QA 1SQPE 1P84E 4PV1D 3L70E 4NBAD 3CWBE 2NVFA 3GL0A 3CX5E 2GBWA 3TGUE 2E74D 5KLVE 5BOKA 3L74E 3VMID 3VMGD 4H44D 2HMLA 1L0NE 3N0QA 2XSHA 2BMOA 1SQVE 2FYNC 4HKVA 2JZAA 1ULIA 2E4PA 4P1CH 4HM3A 2FYUE 2ZYLA 2I7FA 1SQBE 1NYKA 2CKFA 3DQYA 2HMJA 3GZYA 3GKEA 1EZVE 1NU1E 2BCCE 1L0LE 3GOBA 1WQLA 4U3FE 1O7PA 1KYOE 2E76D 1O7GA 4QCKA 5AEUA 3L73E 1NTZE 5CXMA 2GBXA 4QDCA 1O7MA
chains in the Genus database with same CATH superfamily
2YIUC 1BCCE 2YFJA 2QJYC 1O7WA 2BMRA 2QJPC 1JM1A 4HM7A 4QDDA 3H1JE 4QUPA 4HM1A 3GB4A 3GTSA 3L72E 2NWFA 5HL4A 4NB9D 3VMHD 2A06E 1G8KB 2E75D 4QDFA 2NVEA 2DE5D 2YFLA 1VM9A 3BCCE 2NUKA 4H0LD 4HJLA 1EG9A 2JO6A 4HM8A 2B24A 2HMNA 2HMMA 3H1IE 3L75E 1G8JB 1RFSA 4H13D 4AAYB 1ULJA 2DE7D 1KB9E 2NVGA 3H1KE 2YVJB 4NB8D 1O7NA 4OGQD 4QURA 4EMJB 3H1HE 2QPZA 3CXHE 3EQQA 5KKZC 4NBHD 4NBDD 1NDOA 3GTEA 4QDFB 1O7HA 1NTKE 4QUQA 2IBZE 4HM0A 4PD4E 2NUMA 1VF5D 4NBED 2XR8A 2BMQA 2D2CD 5KLIC 4AIVA 2DE6D 2ZT9D 3H1LE 3VCPA 3AZCA 1RIEA 2HMKA 3L71E 1SQQE 2XSOA 1PP9E 2XRXA 4NBCD 2B1XA 2YFIA 1UUVA 1SJGA 3FOUA 4HM2A 3GCEA 1PPJE 4HM4A 3VCAA 2HMOA 1SQXE 4HM5A 1VCKA 3GL2A 3C0DA 3EN1A 3GZXA 1NTME 1UUWA 2Q3WA 1FQTA 4P1BH 4NBBD 1BE3E 5AEWA 4HM6A 1Q90C 2QJKC 1ZRTE 3D89A 4NBFD 4NBGD 2E4QA 1SQPE 1P84E 4PV1D 3L70E 4NBAD 3CWBE 2NVFA 3GL0A 3CX5E 2GBWA 3TGUE 2E74D 5KLVE 5BOKA 3L74E 3VMID 3VMGD 4H44D 2HMLA 1L0NE 3N0QA 2XSHA 2BMOA 1SQVE 2FYNC 4HKVA 2JZAA 1ULIA 2E4PA 4P1CH 4HM3A 2FYUE 2ZYLA 2I7FA 1SQBE 1NYKA 2CKFA 3DQYA 2HMJA 3GZYA 3GKEA 1EZVE 1NU1E 2BCCE 1L0LE 3GOBA 1WQLA 4U3FE 1O7PA 1KYOE 2E76D 1O7GA 4QCKA 5AEUA 3L73E 1NTZE 5CXMA 2GBXA 4QDCA 1O7MA
chains in the Genus database with same CATH topology
2YIUC 1BCCE 2YFJA 2QJYC 1O7WA 2BMRA 2QJPC 1JM1A 4HM7A 4QDDA 3H1JE 4QUPA 4HM1A 3GB4A 3GTSA 3L72E 2NWFA 5HL4A 4NB9D 3VMHD 2A06E 1G8KB 2E75D 4QDFA 2NVEA 2DE5D 2YFLA 1VM9A 3BCCE 2NUKA 4H0LD 4HJLA 1EG9A 2JO6A 4HM8A 2B24A 2HMNA 2HMMA 3H1IE 3L75E 1G8JB 1RFSA 4H13D 4AAYB 1ULJA 2DE7D 1KB9E 2NVGA 3H1KE 2YVJB 4NB8D 1O7NA 4OGQD 4QURA 4EMJB 3H1HE 2QPZA 3CXHE 3EQQA 5KKZC 4NBHD 4NBDD 1NDOA 3GTEA 4QDFB 1O7HA 1NTKE 4QUQA 2IBZE 4HM0A 4PD4E 2NUMA 1VF5D 4NBED 2XR8A 2BMQA 2D2CD 5KLIC 4AIVA 2DE6D 2ZT9D 3H1LE 3VCPA 3AZCA 1RIEA 2HMKA 3L71E 1SQQE 2XSOA 1PP9E 2XRXA 4NBCD 2B1XA 2YFIA 1UUVA 1SJGA 3FOUA 4HM2A 3GCEA 1PPJE 4HM4A 3VCAA 2HMOA 1SQXE 4HM5A 1VCKA 3GL2A 3C0DA 3EN1A 3GZXA 1NTME 1UUWA 2Q3WA 1FQTA 4P1BH 4NBBD 1BE3E 5AEWA 4HM6A 1Q90C 2QJKC 1ZRTE 3D89A 4NBFD 4NBGD 2E4QA 1SQPE 1P84E 4PV1D 3L70E 4NBAD 3CWBE 2NVFA 3GL0A 3CX5E 2GBWA 3TGUE 2E74D 5KLVE 5BOKA 3L74E 3VMID 3VMGD 4H44D 2HMLA 1L0NE 3N0QA 2XSHA 2BMOA 1SQVE 2FYNC 4HKVA 2JZAA 1ULIA 2E4PA 4P1CH 4HM3A 2FYUE 2ZYLA 2I7FA 1SQBE 1NYKA 2CKFA 3DQYA 2HMJA 3GZYA 3GKEA 1EZVE 1NU1E 2BCCE 1L0LE 3GOBA 1WQLA 4U3FE 1O7PA 1KYOE 2E76D 1O7GA 4QCKA 5AEUA 3L73E 1NTZE 5CXMA 2GBXA 4QDCA 1O7MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YIU C;  1BCC E;  2YFJ A;  2QJY C;  1O7W A;  2BMR A;  2QJP C;  1JM1 A;  4HM7 A;  4QDD A;  3H1J E;  4QUP A;  4HM1 A;  3GB4 A;  3GTS A;  3L72 E;  2NWF A;  5HL4 A;  4NB9 D;  3VMH D;  2A06 E;  1G8K B;  2E75 D;  4QDF A;  2NVE A;  2DE5 D;  2YFL A;  1VM9 A;  3BCC E;  2NUK A;  4H0L D;  4HJL A;  1EG9 A;  2JO6 A;  4HM8 A;  2B24 A;  2HMN A;  2HMM A;  3H1I E;  3L75 E;  1G8J B;  1RFS A;  4H13 D;  4AAY B;  1ULJ A;  2DE7 D;  1KB9 E;  2NVG A;  3H1K E;  2YVJ B;  4NB8 D;  1O7N A;  4OGQ D;  4QUR A;  4EMJ B;  3H1H E;  2QPZ A;  3CXH E;  3EQQ A;  5KKZ C;  4NBH D;  4NBD D;  1NDO A;  3GTE A;  4QDF B;  1O7H A;  1NTK E;  4QUQ A;  2IBZ E;  4HM0 A;  4PD4 E;  2NUM A;  1VF5 D;  4NBE D;  2XR8 A;  2BMQ A;  2D2C D;  5KLI C;  4AIV A;  2DE6 D;  2ZT9 D;  3H1L E;  3VCP A;  3AZC A;  1RIE A;  2HMK A;  3L71 E;  1SQQ E;  2XSO A;  1PP9 E;  2XRX A;  4NBC D;  2B1X A;  2YFI A;  1UUV A;  1SJG A;  3FOU A;  4HM2 A;  3GCE A;  1PPJ E;  4HM4 A;  3VCA A;  2HMO A;  1SQX E;  4HM5 A;  1VCK A;  3GL2 A;  3C0D A;  3EN1 A;  3GZX A;  1NTM E;  1UUW A;  2Q3W A;  1FQT A;  4P1B H;  4NBB D;  1BE3 E;  5AEW A;  4HM6 A;  1Q90 C;  2QJK C;  1ZRT E;  3D89 A;  4NBF D;  4NBG D;  2E4Q A;  1SQP E;  1P84 E;  4PV1 D;  3L70 E;  4NBA D;  3CWB E;  2NVF A;  3GL0 A;  3CX5 E;  2GBW A;  3TGU E;  2E74 D;  5KLV E;  5BOK A;  3L74 E;  3VMI D;  3VMG D;  4H44 D;  2HML A;  1L0N E;  3N0Q A;  2XSH A;  2BMO A;  1SQV E;  2FYN C;  4HKV A;  2JZA A;  1ULI A;  2E4P A;  4P1C H;  4HM3 A;  2FYU E;  2ZYL A;  2I7F A;  1SQB E;  1NYK A;  2CKF A;  3DQY A;  2HMJ A;  3GZY A;  3GKE A;  1EZV E;  1NU1 E;  2BCC E;  1L0L E;  3GOB A;  1WQL A;  4U3F E;  1O7P A;  1KYO E;  2E76 D;  1O7G A;  4QCK A;  5AEU A;  3L73 E;  1NTZ E;  5CXM A;  2GBX A;  4QDC A;  1O7M A; 
#chains in the Genus database with same CATH topology
 2YIU C;  1BCC E;  2YFJ A;  2QJY C;  1O7W A;  2BMR A;  2QJP C;  1JM1 A;  4HM7 A;  4QDD A;  3H1J E;  4QUP A;  4HM1 A;  3GB4 A;  3GTS A;  3L72 E;  2NWF A;  5HL4 A;  4NB9 D;  3VMH D;  2A06 E;  1G8K B;  2E75 D;  4QDF A;  2NVE A;  2DE5 D;  2YFL A;  1VM9 A;  3BCC E;  2NUK A;  4H0L D;  4HJL A;  1EG9 A;  2JO6 A;  4HM8 A;  2B24 A;  2HMN A;  2HMM A;  3H1I E;  3L75 E;  1G8J B;  1RFS A;  4H13 D;  4AAY B;  1ULJ A;  2DE7 D;  1KB9 E;  2NVG A;  3H1K E;  2YVJ B;  4NB8 D;  1O7N A;  4OGQ D;  4QUR A;  4EMJ B;  3H1H E;  2QPZ A;  3CXH E;  3EQQ A;  5KKZ C;  4NBH D;  4NBD D;  1NDO A;  3GTE A;  4QDF B;  1O7H A;  1NTK E;  4QUQ A;  2IBZ E;  4HM0 A;  4PD4 E;  2NUM A;  1VF5 D;  4NBE D;  2XR8 A;  2BMQ A;  2D2C D;  5KLI C;  4AIV A;  2DE6 D;  2ZT9 D;  3H1L E;  3VCP A;  3AZC A;  1RIE A;  2HMK A;  3L71 E;  1SQQ E;  2XSO A;  1PP9 E;  2XRX A;  4NBC D;  2B1X A;  2YFI A;  1UUV A;  1SJG A;  3FOU A;  4HM2 A;  3GCE A;  1PPJ E;  4HM4 A;  3VCA A;  2HMO A;  1SQX E;  4HM5 A;  1VCK A;  3GL2 A;  3C0D A;  3EN1 A;  3GZX A;  1NTM E;  1UUW A;  2Q3W A;  1FQT A;  4P1B H;  4NBB D;  1BE3 E;  5AEW A;  4HM6 A;  1Q90 C;  2QJK C;  1ZRT E;  3D89 A;  4NBF D;  4NBG D;  2E4Q A;  1SQP E;  1P84 E;  4PV1 D;  3L70 E;  4NBA D;  3CWB E;  2NVF A;  3GL0 A;  3CX5 E;  2GBW A;  3TGU E;  2E74 D;  5KLV E;  5BOK A;  3L74 E;  3VMI D;  3VMG D;  4H44 D;  2HML A;  1L0N E;  3N0Q A;  2XSH A;  2BMO A;  1SQV E;  2FYN C;  4HKV A;  2JZA A;  1ULI A;  2E4P A;  4P1C H;  4HM3 A;  2FYU E;  2ZYL A;  2I7F A;  1SQB E;  1NYK A;  2CKF A;  3DQY A;  2HMJ A;  3GZY A;  3GKE A;  1EZV E;  1NU1 E;  2BCC E;  1L0L E;  3GOB A;  1WQL A;  4U3F E;  1O7P A;  1KYO E;  2E76 D;  1O7G A;  4QCK A;  5AEU A;  3L73 E;  1NTZ E;  5CXM A;  2GBX A;  4QDC A;  1O7M A; 
#chains in the Genus database with same CATH homology
 2YIU C;  1BCC E;  2YFJ A;  2QJY C;  1O7W A;  2BMR A;  2QJP C;  1JM1 A;  4HM7 A;  4QDD A;  3H1J E;  4QUP A;  4HM1 A;  3GB4 A;  3GTS A;  3L72 E;  2NWF A;  5HL4 A;  4NB9 D;  3VMH D;  2A06 E;  1G8K B;  2E75 D;  4QDF A;  2NVE A;  2DE5 D;  2YFL A;  1VM9 A;  3BCC E;  2NUK A;  4H0L D;  4HJL A;  1EG9 A;  2JO6 A;  4HM8 A;  2B24 A;  2HMN A;  2HMM A;  3H1I E;  3L75 E;  1G8J B;  1RFS A;  4H13 D;  4AAY B;  1ULJ A;  2DE7 D;  1KB9 E;  2NVG A;  3H1K E;  2YVJ B;  4NB8 D;  1O7N A;  4OGQ D;  4QUR A;  4EMJ B;  3H1H E;  2QPZ A;  3CXH E;  3EQQ A;  5KKZ C;  4NBH D;  4NBD D;  1NDO A;  3GTE A;  4QDF B;  1O7H A;  1NTK E;  4QUQ A;  2IBZ E;  4HM0 A;  4PD4 E;  2NUM A;  1VF5 D;  4NBE D;  2XR8 A;  2BMQ A;  2D2C D;  5KLI C;  4AIV A;  2DE6 D;  2ZT9 D;  3H1L E;  3VCP A;  3AZC A;  1RIE A;  2HMK A;  3L71 E;  1SQQ E;  2XSO A;  1PP9 E;  2XRX A;  4NBC D;  2B1X A;  2YFI A;  1UUV A;  1SJG A;  3FOU A;  4HM2 A;  3GCE A;  1PPJ E;  4HM4 A;  3VCA A;  2HMO A;  1SQX E;  4HM5 A;  1VCK A;  3GL2 A;  3C0D A;  3EN1 A;  3GZX A;  1NTM E;  1UUW A;  2Q3W A;  1FQT A;  4P1B H;  4NBB D;  1BE3 E;  5AEW A;  4HM6 A;  1Q90 C;  2QJK C;  1ZRT E;  3D89 A;  4NBF D;  4NBG D;  2E4Q A;  1SQP E;  1P84 E;  4PV1 D;  3L70 E;  4NBA D;  3CWB E;  2NVF A;  3GL0 A;  3CX5 E;  2GBW A;  3TGU E;  2E74 D;  5KLV E;  5BOK A;  3L74 E;  3VMI D;  3VMG D;  4H44 D;  2HML A;  1L0N E;  3N0Q A;  2XSH A;  2BMO A;  1SQV E;  2FYN C;  4HKV A;  2JZA A;  1ULI A;  2E4P A;  4P1C H;  4HM3 A;  2FYU E;  2ZYL A;  2I7F A;  1SQB E;  1NYK A;  2CKF A;  3DQY A;  2HMJ A;  3GZY A;  3GKE A;  1EZV E;  1NU1 E;  2BCC E;  1L0L E;  3GOB A;  1WQL A;  4U3F E;  1O7P A;  1KYO E;  2E76 D;  1O7G A;  4QCK A;  5AEU A;  3L73 E;  1NTZ E;  5CXM A;  2GBX A;  4QDC A;  1O7M A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...