4NBFD

Oxygenase with gln282 replaced by asn and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Terminal oxygenase component of carbazole
publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
total genus 19
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbfD00
2ZYLA 4HM7A 2HMNA 1SQVE 2NUKA 2YFIA 3L74E 4NBBD 4NBFD 1O7GA 2E4QA 4NBED 4P1CH 1G8JB 3CXHE 1NTZE 5KKZC 5AEWA 4H13D 2D2CD 4QUQA 5CXMA 2NUMA 3L72E 1EG9A 2E74D 1RFSA 2A06E 2NVGA 3GCEA 3GL0A 4HKVA 2YFLA 2I7FA 1NTME 2FYNC 4QDFB 1NU1E 1VF5D 4AIVA 1SQQE 2CKFA 2ZT9D 4OGQD 2HMLA 5HL4A 1UUWA 4NB9D 4QDCA 3GOBA 3H1LE 2HMKA 2E76D 2FYUE 1VCKA 4PD4E 4QURA 2DE7D 4NBCD 1EZVE 2Q3WA 2JO6A 4NBHD 3L73E 2XRXA 2GBWA 1O7MA 1RIEA 5BOKA 2XR8A 2HMOA 2YIUC 4U3FE 2BCCE 4QDDA 1VM9A 1P84E 3L75E 3FOUA 3CWBE 2NWFA 1BCCE 2QPZA 4NBDD 2BMRA 2YFJA 2IBZE 3H1HE 4NB8D 3DQYA 3GB4A 2HMMA 3L70E 4HM5A 4NBGD 1ULJA 3VCPA 3GTSA 3VMHD 1L0NE 4AAYB 4QDFA 4QUPA 4EMJB 1PPJE 1ULIA 2NVEA 1KB9E 1G8KB 1O7PA 2XSHA 3GZXA 3TGUE 4HM2A 1UUVA 1O7NA 3H1JE 4P1BH 4NBAD 1L0LE 2DE6D 2GBXA 2XSOA 2BMOA 4HJLA 4HM1A 1SQPE 3L71E 1KYOE 3H1IE 2NVFA 5AEUA 4HM8A 2JZAA 4HM4A 1SQXE 1WQLA 3C0DA 1SQBE 2E4PA 2E75D 3EQQA 4PV1D 3GKEA 5KLVE 2QJKC 3BCCE 2HMJA 3GL2A 2B1XA 4H44D 1O7WA 1NTKE 2B24A 4QCKA 3GZYA 4H0LD 1JM1A 1Q90C 1ZRTE 1NDOA 1BE3E 3GTEA 3VCAA 2BMQA 4HM0A 2QJYC 1NYKA 4HM6A 2QJPC 1O7HA 4HM3A 3CX5E 3VMID 3EN1A 3VMGD 3H1KE 5KLIC 1FQTA 1SJGA 2DE5D 3D89A 1PP9E 3AZCA 3N0QA 2YVJB
chains in the Genus database with same CATH superfamily
2ZYLA 4HM7A 2HMNA 1SQVE 2NUKA 2YFIA 3L74E 4NBBD 4NBFD 1O7GA 2E4QA 4NBED 4P1CH 1G8JB 3CXHE 1NTZE 5KKZC 5AEWA 4H13D 2D2CD 4QUQA 5CXMA 2NUMA 3L72E 1EG9A 2E74D 1RFSA 2A06E 2NVGA 3GCEA 3GL0A 4HKVA 2YFLA 2I7FA 1NTME 2FYNC 4QDFB 1NU1E 1VF5D 4AIVA 1SQQE 2CKFA 2ZT9D 4OGQD 2HMLA 5HL4A 1UUWA 4NB9D 4QDCA 3GOBA 3H1LE 2HMKA 2E76D 2FYUE 1VCKA 4PD4E 4QURA 2DE7D 4NBCD 1EZVE 2Q3WA 2JO6A 4NBHD 3L73E 2XRXA 2GBWA 1O7MA 1RIEA 5BOKA 2XR8A 2HMOA 2YIUC 4U3FE 2BCCE 4QDDA 1VM9A 1P84E 3L75E 3FOUA 3CWBE 2NWFA 1BCCE 2QPZA 4NBDD 2BMRA 2YFJA 2IBZE 3H1HE 4NB8D 3DQYA 3GB4A 2HMMA 3L70E 4HM5A 4NBGD 1ULJA 3VCPA 3GTSA 3VMHD 1L0NE 4AAYB 4QDFA 4QUPA 4EMJB 1PPJE 1ULIA 2NVEA 1KB9E 1G8KB 1O7PA 2XSHA 3GZXA 3TGUE 4HM2A 1UUVA 1O7NA 3H1JE 4P1BH 4NBAD 1L0LE 2DE6D 2GBXA 2XSOA 2BMOA 4HJLA 4HM1A 1SQPE 3L71E 1KYOE 3H1IE 2NVFA 5AEUA 4HM8A 2JZAA 4HM4A 1SQXE 1WQLA 3C0DA 1SQBE 2E4PA 2E75D 3EQQA 4PV1D 3GKEA 5KLVE 2QJKC 3BCCE 2HMJA 3GL2A 2B1XA 4H44D 1O7WA 1NTKE 2B24A 4QCKA 3GZYA 4H0LD 1JM1A 1Q90C 1ZRTE 1NDOA 1BE3E 3GTEA 3VCAA 2BMQA 4HM0A 2QJYC 1NYKA 4HM6A 2QJPC 1O7HA 4HM3A 3CX5E 3VMID 3EN1A 3VMGD 3H1KE 5KLIC 1FQTA 1SJGA 2DE5D 3D89A 1PP9E 3AZCA 3N0QA 2YVJB
chains in the Genus database with same CATH topology
2ZYLA 4HM7A 2HMNA 1SQVE 2NUKA 2YFIA 3L74E 4NBBD 4NBFD 1O7GA 2E4QA 4NBED 4P1CH 1G8JB 3CXHE 1NTZE 5KKZC 5AEWA 4H13D 2D2CD 4QUQA 5CXMA 2NUMA 3L72E 1EG9A 2E74D 1RFSA 2A06E 2NVGA 3GCEA 3GL0A 4HKVA 2YFLA 2I7FA 1NTME 2FYNC 4QDFB 1NU1E 1VF5D 4AIVA 1SQQE 2CKFA 2ZT9D 4OGQD 2HMLA 5HL4A 1UUWA 4NB9D 4QDCA 3GOBA 3H1LE 2HMKA 2E76D 2FYUE 1VCKA 4PD4E 4QURA 2DE7D 4NBCD 1EZVE 2Q3WA 2JO6A 4NBHD 3L73E 2XRXA 2GBWA 1O7MA 1RIEA 5BOKA 2XR8A 2HMOA 2YIUC 4U3FE 2BCCE 4QDDA 1VM9A 1P84E 3L75E 3FOUA 3CWBE 2NWFA 1BCCE 2QPZA 4NBDD 2BMRA 2YFJA 2IBZE 3H1HE 4NB8D 3DQYA 3GB4A 2HMMA 3L70E 4HM5A 4NBGD 1ULJA 3VCPA 3GTSA 3VMHD 1L0NE 4AAYB 4QDFA 4QUPA 4EMJB 1PPJE 1ULIA 2NVEA 1KB9E 1G8KB 1O7PA 2XSHA 3GZXA 3TGUE 4HM2A 1UUVA 1O7NA 3H1JE 4P1BH 4NBAD 1L0LE 2DE6D 2GBXA 2XSOA 2BMOA 4HJLA 4HM1A 1SQPE 3L71E 1KYOE 3H1IE 2NVFA 5AEUA 4HM8A 2JZAA 4HM4A 1SQXE 1WQLA 3C0DA 1SQBE 2E4PA 2E75D 3EQQA 4PV1D 3GKEA 5KLVE 2QJKC 3BCCE 2HMJA 3GL2A 2B1XA 4H44D 1O7WA 1NTKE 2B24A 4QCKA 3GZYA 4H0LD 1JM1A 1Q90C 1ZRTE 1NDOA 1BE3E 3GTEA 3VCAA 2BMQA 4HM0A 2QJYC 1NYKA 4HM6A 2QJPC 1O7HA 4HM3A 3CX5E 3VMID 3EN1A 3VMGD 3H1KE 5KLIC 1FQTA 1SJGA 2DE5D 3D89A 1PP9E 3AZCA 3N0QA 2YVJB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZYL A;  4HM7 A;  2HMN A;  1SQV E;  2NUK A;  2YFI A;  3L74 E;  4NBB D;  4NBF D;  1O7G A;  2E4Q A;  4NBE D;  4P1C H;  1G8J B;  3CXH E;  1NTZ E;  5KKZ C;  5AEW A;  4H13 D;  2D2C D;  4QUQ A;  5CXM A;  2NUM A;  3L72 E;  1EG9 A;  2E74 D;  1RFS A;  2A06 E;  2NVG A;  3GCE A;  3GL0 A;  4HKV A;  2YFL A;  2I7F A;  1NTM E;  2FYN C;  4QDF B;  1NU1 E;  1VF5 D;  4AIV A;  1SQQ E;  2CKF A;  2ZT9 D;  4OGQ D;  2HML A;  5HL4 A;  1UUW A;  4NB9 D;  4QDC A;  3GOB A;  3H1L E;  2HMK A;  2E76 D;  2FYU E;  1VCK A;  4PD4 E;  4QUR A;  2DE7 D;  4NBC D;  1EZV E;  2Q3W A;  2JO6 A;  4NBH D;  3L73 E;  2XRX A;  2GBW A;  1O7M A;  1RIE A;  5BOK A;  2XR8 A;  2HMO A;  2YIU C;  4U3F E;  2BCC E;  4QDD A;  1VM9 A;  1P84 E;  3L75 E;  3FOU A;  3CWB E;  2NWF A;  1BCC E;  2QPZ A;  4NBD D;  2BMR A;  2YFJ A;  2IBZ E;  3H1H E;  4NB8 D;  3DQY A;  3GB4 A;  2HMM A;  3L70 E;  4HM5 A;  4NBG D;  1ULJ A;  3VCP A;  3GTS A;  3VMH D;  1L0N E;  4AAY B;  4QDF A;  4QUP A;  4EMJ B;  1PPJ E;  1ULI A;  2NVE A;  1KB9 E;  1G8K B;  1O7P A;  2XSH A;  3GZX A;  3TGU E;  4HM2 A;  1UUV A;  1O7N A;  3H1J E;  4P1B H;  4NBA D;  1L0L E;  2DE6 D;  2GBX A;  2XSO A;  2BMO A;  4HJL A;  4HM1 A;  1SQP E;  3L71 E;  1KYO E;  3H1I E;  2NVF A;  5AEU A;  4HM8 A;  2JZA A;  4HM4 A;  1SQX E;  1WQL A;  3C0D A;  1SQB E;  2E4P A;  2E75 D;  3EQQ A;  4PV1 D;  3GKE A;  5KLV E;  2QJK C;  3BCC E;  2HMJ A;  3GL2 A;  2B1X A;  4H44 D;  1O7W A;  1NTK E;  2B24 A;  4QCK A;  3GZY A;  4H0L D;  1JM1 A;  1Q90 C;  1ZRT E;  1NDO A;  1BE3 E;  3GTE A;  3VCA A;  2BMQ A;  4HM0 A;  2QJY C;  1NYK A;  4HM6 A;  2QJP C;  1O7H A;  4HM3 A;  3CX5 E;  3VMI D;  3EN1 A;  3VMG D;  3H1K E;  5KLI C;  1FQT A;  1SJG A;  2DE5 D;  3D89 A;  1PP9 E;  3AZC A;  3N0Q A;  2YVJ B; 
#chains in the Genus database with same CATH topology
 2ZYL A;  4HM7 A;  2HMN A;  1SQV E;  2NUK A;  2YFI A;  3L74 E;  4NBB D;  4NBF D;  1O7G A;  2E4Q A;  4NBE D;  4P1C H;  1G8J B;  3CXH E;  1NTZ E;  5KKZ C;  5AEW A;  4H13 D;  2D2C D;  4QUQ A;  5CXM A;  2NUM A;  3L72 E;  1EG9 A;  2E74 D;  1RFS A;  2A06 E;  2NVG A;  3GCE A;  3GL0 A;  4HKV A;  2YFL A;  2I7F A;  1NTM E;  2FYN C;  4QDF B;  1NU1 E;  1VF5 D;  4AIV A;  1SQQ E;  2CKF A;  2ZT9 D;  4OGQ D;  2HML A;  5HL4 A;  1UUW A;  4NB9 D;  4QDC A;  3GOB A;  3H1L E;  2HMK A;  2E76 D;  2FYU E;  1VCK A;  4PD4 E;  4QUR A;  2DE7 D;  4NBC D;  1EZV E;  2Q3W A;  2JO6 A;  4NBH D;  3L73 E;  2XRX A;  2GBW A;  1O7M A;  1RIE A;  5BOK A;  2XR8 A;  2HMO A;  2YIU C;  4U3F E;  2BCC E;  4QDD A;  1VM9 A;  1P84 E;  3L75 E;  3FOU A;  3CWB E;  2NWF A;  1BCC E;  2QPZ A;  4NBD D;  2BMR A;  2YFJ A;  2IBZ E;  3H1H E;  4NB8 D;  3DQY A;  3GB4 A;  2HMM A;  3L70 E;  4HM5 A;  4NBG D;  1ULJ A;  3VCP A;  3GTS A;  3VMH D;  1L0N E;  4AAY B;  4QDF A;  4QUP A;  4EMJ B;  1PPJ E;  1ULI A;  2NVE A;  1KB9 E;  1G8K B;  1O7P A;  2XSH A;  3GZX A;  3TGU E;  4HM2 A;  1UUV A;  1O7N A;  3H1J E;  4P1B H;  4NBA D;  1L0L E;  2DE6 D;  2GBX A;  2XSO A;  2BMO A;  4HJL A;  4HM1 A;  1SQP E;  3L71 E;  1KYO E;  3H1I E;  2NVF A;  5AEU A;  4HM8 A;  2JZA A;  4HM4 A;  1SQX E;  1WQL A;  3C0D A;  1SQB E;  2E4P A;  2E75 D;  3EQQ A;  4PV1 D;  3GKE A;  5KLV E;  2QJK C;  3BCC E;  2HMJ A;  3GL2 A;  2B1X A;  4H44 D;  1O7W A;  1NTK E;  2B24 A;  4QCK A;  3GZY A;  4H0L D;  1JM1 A;  1Q90 C;  1ZRT E;  1NDO A;  1BE3 E;  3GTE A;  3VCA A;  2BMQ A;  4HM0 A;  2QJY C;  1NYK A;  4HM6 A;  2QJP C;  1O7H A;  4HM3 A;  3CX5 E;  3VMI D;  3EN1 A;  3VMG D;  3H1K E;  5KLI C;  1FQT A;  1SJG A;  2DE5 D;  3D89 A;  1PP9 E;  3AZC A;  3N0Q A;  2YVJ B; 
#chains in the Genus database with same CATH homology
 2ZYL A;  4HM7 A;  2HMN A;  1SQV E;  2NUK A;  2YFI A;  3L74 E;  4NBB D;  4NBF D;  1O7G A;  2E4Q A;  4NBE D;  4P1C H;  1G8J B;  3CXH E;  1NTZ E;  5KKZ C;  5AEW A;  4H13 D;  2D2C D;  4QUQ A;  5CXM A;  2NUM A;  3L72 E;  1EG9 A;  2E74 D;  1RFS A;  2A06 E;  2NVG A;  3GCE A;  3GL0 A;  4HKV A;  2YFL A;  2I7F A;  1NTM E;  2FYN C;  4QDF B;  1NU1 E;  1VF5 D;  4AIV A;  1SQQ E;  2CKF A;  2ZT9 D;  4OGQ D;  2HML A;  5HL4 A;  1UUW A;  4NB9 D;  4QDC A;  3GOB A;  3H1L E;  2HMK A;  2E76 D;  2FYU E;  1VCK A;  4PD4 E;  4QUR A;  2DE7 D;  4NBC D;  1EZV E;  2Q3W A;  2JO6 A;  4NBH D;  3L73 E;  2XRX A;  2GBW A;  1O7M A;  1RIE A;  5BOK A;  2XR8 A;  2HMO A;  2YIU C;  4U3F E;  2BCC E;  4QDD A;  1VM9 A;  1P84 E;  3L75 E;  3FOU A;  3CWB E;  2NWF A;  1BCC E;  2QPZ A;  4NBD D;  2BMR A;  2YFJ A;  2IBZ E;  3H1H E;  4NB8 D;  3DQY A;  3GB4 A;  2HMM A;  3L70 E;  4HM5 A;  4NBG D;  1ULJ A;  3VCP A;  3GTS A;  3VMH D;  1L0N E;  4AAY B;  4QDF A;  4QUP A;  4EMJ B;  1PPJ E;  1ULI A;  2NVE A;  1KB9 E;  1G8K B;  1O7P A;  2XSH A;  3GZX A;  3TGU E;  4HM2 A;  1UUV A;  1O7N A;  3H1J E;  4P1B H;  4NBA D;  1L0L E;  2DE6 D;  2GBX A;  2XSO A;  2BMO A;  4HJL A;  4HM1 A;  1SQP E;  3L71 E;  1KYO E;  3H1I E;  2NVF A;  5AEU A;  4HM8 A;  2JZA A;  4HM4 A;  1SQX E;  1WQL A;  3C0D A;  1SQB E;  2E4P A;  2E75 D;  3EQQ A;  4PV1 D;  3GKE A;  5KLV E;  2QJK C;  3BCC E;  2HMJ A;  3GL2 A;  2B1X A;  4H44 D;  1O7W A;  1NTK E;  2B24 A;  4QCK A;  3GZY A;  4H0L D;  1JM1 A;  1Q90 C;  1ZRT E;  1NDO A;  1BE3 E;  3GTE A;  3VCA A;  2BMQ A;  4HM0 A;  2QJY C;  1NYK A;  4HM6 A;  2QJP C;  1O7H A;  4HM3 A;  3CX5 E;  3VMI D;  3EN1 A;  3VMG D;  3H1K E;  5KLI C;  1FQT A;  1SJG A;  2DE5 D;  3D89 A;  1PP9 E;  3AZC A;  3N0Q A;  2YVJ B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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