5HL4A

Acoustic injectors for drop-on-demand serial femtosecond crystallography
Total Genus 108
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
108
sequence length
401
structure length
397
Chain Sequence
TSIHQRLDRRLSGFSLEQPFYTSPEVYALDLQHIFYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAFHNSCRHRGSLICKARQGQVAKLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNLDGLIYICLSDTPPDFQTFAQLARPYLEVHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPLDPEVAGVGVSKKLQAHFDRCEAAGTPAQFVLAGDGQYRLARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHFLPDHSLTFRVMPISPTETEVTTTWLVHKDAVEGVDYDLKRLTEVWIATNDEDREIVETNQQGILSPAYVPGPYSPGQESGVMQFVDWYAASLERALAP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Ring-hydroxylating dioxygenase
publication title Acoustic Injectors for Drop-On-Demand Serial Femtosecond Crystallography.
pubmed doi rcsb
source organism Sinorhizobium meliloti 1021
molecule tags Oxidoreductase
total genus 108
structure length 397
sequence length 401
ec nomenclature
pdb deposition date 2016-01-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 5hl4A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 5hl4A01
3VMHA 3GTEA 3GZYA 3CX5E 4HM7A 1O7MA 3GCFA 3VCPA 1SQBE 4HM4A 2DE7A 2GBXA 3BCCE 2DE7D 1NTME 1WW9A 2NUMA 2BMQA 3L73E 2NVGA 2Q3WA 3H1LE 4NBED 3H1KE 4NBBD 2D2CD 1O7GA 4PD4E 4NBHA 4QUPA 2HMLA 4EMJB 4HM6A 4HM5A 3FOUA 1SQPE 1NDOA 4HJLA 5KLVE 3CWBE 1RIEA 5HL4A 2HMOA 2DE5A 2HMKA 2IBZE 2YIUC 2QJYC 1O7WA 4HM3A 4NBGD 3H1JE 1P84E 2B24A 3CXHE 3VMHD 1PP9E 2CKFA 2E4QA 3L72E 3L70E 3L74E 1BCCE 4NBAA 1NYKA 4NBCA 3GL0A 4PV1D 1O7HA 2JZAA 2JO6A 1O7PA 3AZCA 4AIVA 1SJGA 4P1BH 2HMJA 3VMGA 2YVJB 3GCEA 4HKVA 3H1HE 1NTZE 4NBHD 4U3FE 2XRXA 4P1CH 3GL2A 2YFIA 2DE6A 2DE6D 2B1XA 2E75D 4QDDA 3L71E 3VMIA 4NB8A 3TGUE 1EG9A 1SQVE 2FYNC 2DE5D 1BE3E 3GB4A 2I7FA 3L75E 1WQLA 1EZVE 2BMRA 1G8KB 1KB9E 2NVFA 1ZRTE 2QJKC 1SQXE 1L0LE 3GZXA 2NWFA 4AAYB 2YFJA 4NB9A 4NB9D 4QURA 4NBAD 4NBCD 3GTSA 2ZT9D 2BMOA 1NU1E 5KKZC 2HMNA 4HM2A 1JM1A 2HMMA 4H44D 3GKQA 2NVEA 1L0NE 2GBWA 3VMGD 4QDFB 4QDCA 4H13D 2E74D 2YFLA 3EN1A 1ULIA 2BCCE 4HM1A 2NUKA 3VMID 1Z03A 4NB8D 1Q90C 1Z01A 5CXMA 1NTKE 2XSHA 1VF5D 3DQYA 4HM0A 5AEWA 4OGQD 1VCKA 3VCAA 3N0QA 3GKEA 2QJPC 2XR8A 1Z02A 1FQTA 1VM9A 1UUWA 2FYUE 4NBEA 5BOKA 4NBBA 1G8JB 4NBFA 4NBFD 3C0DA 1ULJA 3H1IE 3EQQA 4H0LD 4HM8A 4NBDA 4NBDD 4QUQA 3GOBA 5AEUA 2E4PA 2QPZA 4QDFA 2XSOA 5KLIC 1RFSA 1UUVA 4QCKA 2ZYLA 4NBGA 1PPJE 2E76D 1KYOE 1O7NA 2A06E 3D89A 1SQQE
chains in the Genus database with same CATH superfamily
3VMHA 3GTEA 3GZYA 3CX5E 4HM7A 1O7MA 3GCFA 3VCPA 1SQBE 4HM4A 2DE7A 2GBXA 3BCCE 2DE7D 1NTME 1WW9A 2NUMA 2BMQA 3L73E 2NVGA 2Q3WA 3H1LE 4NBED 3H1KE 4NBBD 2D2CD 1O7GA 4PD4E 4NBHA 4QUPA 2HMLA 4EMJB 4HM6A 4HM5A 3FOUA 1SQPE 1NDOA 4HJLA 5KLVE 3CWBE 1RIEA 5HL4A 2HMOA 2DE5A 2HMKA 2IBZE 2YIUC 2QJYC 1O7WA 4HM3A 4NBGD 3H1JE 1P84E 2B24A 3CXHE 3VMHD 1PP9E 2CKFA 2E4QA 3L72E 3L70E 3L74E 1BCCE 4NBAA 1NYKA 4NBCA 3GL0A 4PV1D 1O7HA 2JZAA 2JO6A 1O7PA 3AZCA 4AIVA 1SJGA 4P1BH 2HMJA 3VMGA 2YVJB 3GCEA 4HKVA 3H1HE 1NTZE 4NBHD 4U3FE 2XRXA 4P1CH 3GL2A 2YFIA 2DE6A 2DE6D 2B1XA 2E75D 4QDDA 3L71E 3VMIA 4NB8A 3TGUE 1EG9A 1SQVE 2FYNC 2DE5D 1BE3E 3GB4A 2I7FA 3L75E 1WQLA 1EZVE 2BMRA 1G8KB 1KB9E 2NVFA 1ZRTE 2QJKC 1SQXE 1L0LE 3GZXA 2NWFA 4AAYB 2YFJA 4NB9A 4NB9D 4QURA 4NBAD 4NBCD 3GTSA 2ZT9D 2BMOA 1NU1E 5KKZC 2HMNA 4HM2A 1JM1A 2HMMA 4H44D 3GKQA 2NVEA 1L0NE 2GBWA 3VMGD 4QDFB 4QDCA 4H13D 2E74D 2YFLA 3EN1A 1ULIA 2BCCE 4HM1A 2NUKA 3VMID 1Z03A 4NB8D 1Q90C 1Z01A 5CXMA 1NTKE 2XSHA 1VF5D 3DQYA 4HM0A 5AEWA 4OGQD 1VCKA 3VCAA 3N0QA 3GKEA 2QJPC 2XR8A 1Z02A 1FQTA 1VM9A 1UUWA 2FYUE 4NBEA 5BOKA 4NBBA 1G8JB 4NBFA 4NBFD 3C0DA 1ULJA 3H1IE 3EQQA 4H0LD 4HM8A 4NBDA 4NBDD 4QUQA 3GOBA 5AEUA 2E4PA 2QPZA 4QDFA 2XSOA 5KLIC 1RFSA 1UUVA 4QCKA 2ZYLA 4NBGA 1PPJE 2E76D 1KYOE 1O7NA 2A06E 3D89A 1SQQE
chains in the Genus database with same CATH topology
3VMHA 3GTEA 3GZYA 3CX5E 4HM7A 1O7MA 3GCFA 3VCPA 1SQBE 4HM4A 2DE7A 2GBXA 3BCCE 2DE7D 1NTME 1WW9A 2NUMA 2BMQA 3L73E 2NVGA 2Q3WA 3H1LE 4NBED 3H1KE 4NBBD 2D2CD 1O7GA 4PD4E 4NBHA 4QUPA 2HMLA 4EMJB 4HM6A 4HM5A 3FOUA 1SQPE 1NDOA 4HJLA 5KLVE 3CWBE 1RIEA 5HL4A 2HMOA 2DE5A 2HMKA 2IBZE 2YIUC 2QJYC 1O7WA 4HM3A 4NBGD 3H1JE 1P84E 2B24A 3CXHE 3VMHD 1PP9E 2CKFA 2E4QA 3L72E 3L70E 3L74E 1BCCE 4NBAA 1NYKA 4NBCA 3GL0A 4PV1D 1O7HA 2JZAA 2JO6A 1O7PA 3AZCA 4AIVA 1SJGA 4P1BH 2HMJA 3VMGA 2YVJB 3GCEA 4HKVA 3H1HE 1NTZE 4NBHD 4U3FE 2XRXA 4P1CH 3GL2A 2YFIA 2DE6A 2DE6D 2B1XA 2E75D 4QDDA 3L71E 3VMIA 4NB8A 3TGUE 1EG9A 1SQVE 2FYNC 2DE5D 1BE3E 3GB4A 2I7FA 3L75E 1WQLA 1EZVE 2BMRA 1G8KB 1KB9E 2NVFA 1ZRTE 2QJKC 1SQXE 1L0LE 3GZXA 2NWFA 4AAYB 2YFJA 4NB9A 4NB9D 4QURA 4NBAD 4NBCD 3GTSA 2ZT9D 2BMOA 1NU1E 5KKZC 2HMNA 4HM2A 1JM1A 2HMMA 4H44D 3GKQA 2NVEA 1L0NE 2GBWA 3VMGD 4QDFB 4QDCA 4H13D 2E74D 2YFLA 3EN1A 1ULIA 2BCCE 4HM1A 2NUKA 3VMID 1Z03A 4NB8D 1Q90C 1Z01A 5CXMA 1NTKE 2XSHA 1VF5D 3DQYA 4HM0A 5AEWA 4OGQD 1VCKA 3VCAA 3N0QA 3GKEA 2QJPC 2XR8A 1Z02A 1FQTA 1VM9A 1UUWA 2FYUE 4NBEA 5BOKA 4NBBA 1G8JB 4NBFA 4NBFD 3C0DA 1ULJA 3H1IE 3EQQA 4H0LD 4HM8A 4NBDA 4NBDD 4QUQA 3GOBA 5AEUA 2E4PA 2QPZA 4QDFA 2XSOA 5KLIC 1RFSA 1UUVA 4QCKA 2ZYLA 4NBGA 1PPJE 2E76D 1KYOE 1O7NA 2A06E 3D89A 1SQQE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VMH A;  3GTE A;  3GZY A;  3CX5 E;  4HM7 A;  1O7M A;  3GCF A;  3VCP A;  1SQB E;  4HM4 A;  2DE7 A;  2GBX A;  3BCC E;  2DE7 D;  1NTM E;  1WW9 A;  2NUM A;  2BMQ A;  3L73 E;  2NVG A;  2Q3W A;  3H1L E;  4NBE D;  3H1K E;  4NBB D;  2D2C D;  1O7G A;  4PD4 E;  4NBH A;  4QUP A;  2HML A;  4EMJ B;  4HM6 A;  4HM5 A;  3FOU A;  1SQP E;  1NDO A;  4HJL A;  5KLV E;  3CWB E;  1RIE A;  5HL4 A;  2HMO A;  2DE5 A;  2HMK A;  2IBZ E;  2YIU C;  2QJY C;  1O7W A;  4HM3 A;  4NBG D;  3H1J E;  1P84 E;  2B24 A;  3CXH E;  3VMH D;  1PP9 E;  2CKF A;  2E4Q A;  3L72 E;  3L70 E;  3L74 E;  1BCC E;  4NBA A;  1NYK A;  4NBC A;  3GL0 A;  4PV1 D;  1O7H A;  2JZA A;  2JO6 A;  1O7P A;  3AZC A;  4AIV A;  1SJG A;  4P1B H;  2HMJ A;  3VMG A;  2YVJ B;  3GCE A;  4HKV A;  3H1H E;  1NTZ E;  4NBH D;  4U3F E;  2XRX A;  4P1C H;  3GL2 A;  2YFI A;  2DE6 A;  2DE6 D;  2B1X A;  2E75 D;  4QDD A;  3L71 E;  3VMI A;  4NB8 A;  3TGU E;  1EG9 A;  1SQV E;  2FYN C;  2DE5 D;  1BE3 E;  3GB4 A;  2I7F A;  3L75 E;  1WQL A;  1EZV E;  2BMR A;  1G8K B;  1KB9 E;  2NVF A;  1ZRT E;  2QJK C;  1SQX E;  1L0L E;  3GZX A;  2NWF A;  4AAY B;  2YFJ A;  4NB9 A;  4NB9 D;  4QUR A;  4NBA D;  4NBC D;  3GTS A;  2ZT9 D;  2BMO A;  1NU1 E;  5KKZ C;  2HMN A;  4HM2 A;  1JM1 A;  2HMM A;  4H44 D;  3GKQ A;  2NVE A;  1L0N E;  2GBW A;  3VMG D;  4QDF B;  4QDC A;  4H13 D;  2E74 D;  2YFL A;  3EN1 A;  1ULI A;  2BCC E;  4HM1 A;  2NUK A;  3VMI D;  1Z03 A;  4NB8 D;  1Q90 C;  1Z01 A;  5CXM A;  1NTK E;  2XSH A;  1VF5 D;  3DQY A;  4HM0 A;  5AEW A;  4OGQ D;  1VCK A;  3VCA A;  3N0Q A;  3GKE A;  2QJP C;  2XR8 A;  1Z02 A;  1FQT A;  1VM9 A;  1UUW A;  2FYU E;  4NBE A;  5BOK A;  4NBB A;  1G8J B;  4NBF A;  4NBF D;  3C0D A;  1ULJ A;  3H1I E;  3EQQ A;  4H0L D;  4HM8 A;  4NBD A;  4NBD D;  4QUQ A;  3GOB A;  5AEU A;  2E4P A;  2QPZ A;  4QDF A;  2XSO A;  5KLI C;  1RFS A;  1UUV A;  4QCK A;  2ZYL A;  4NBG A;  1PPJ E;  2E76 D;  1KYO E;  1O7N A;  2A06 E;  3D89 A;  1SQQ E; 
#chains in the Genus database with same CATH topology
 3VMH A;  3GTE A;  3GZY A;  3CX5 E;  4HM7 A;  1O7M A;  3GCF A;  3VCP A;  1SQB E;  4HM4 A;  2DE7 A;  2GBX A;  3BCC E;  2DE7 D;  1NTM E;  1WW9 A;  2NUM A;  2BMQ A;  3L73 E;  2NVG A;  2Q3W A;  3H1L E;  4NBE D;  3H1K E;  4NBB D;  2D2C D;  1O7G A;  4PD4 E;  4NBH A;  4QUP A;  2HML A;  4EMJ B;  4HM6 A;  4HM5 A;  3FOU A;  1SQP E;  1NDO A;  4HJL A;  5KLV E;  3CWB E;  1RIE A;  5HL4 A;  2HMO A;  2DE5 A;  2HMK A;  2IBZ E;  2YIU C;  2QJY C;  1O7W A;  4HM3 A;  4NBG D;  3H1J E;  1P84 E;  2B24 A;  3CXH E;  3VMH D;  1PP9 E;  2CKF A;  2E4Q A;  3L72 E;  3L70 E;  3L74 E;  1BCC E;  4NBA A;  1NYK A;  4NBC A;  3GL0 A;  4PV1 D;  1O7H A;  2JZA A;  2JO6 A;  1O7P A;  3AZC A;  4AIV A;  1SJG A;  4P1B H;  2HMJ A;  3VMG A;  2YVJ B;  3GCE A;  4HKV A;  3H1H E;  1NTZ E;  4NBH D;  4U3F E;  2XRX A;  4P1C H;  3GL2 A;  2YFI A;  2DE6 A;  2DE6 D;  2B1X A;  2E75 D;  4QDD A;  3L71 E;  3VMI A;  4NB8 A;  3TGU E;  1EG9 A;  1SQV E;  2FYN C;  2DE5 D;  1BE3 E;  3GB4 A;  2I7F A;  3L75 E;  1WQL A;  1EZV E;  2BMR A;  1G8K B;  1KB9 E;  2NVF A;  1ZRT E;  2QJK C;  1SQX E;  1L0L E;  3GZX A;  2NWF A;  4AAY B;  2YFJ A;  4NB9 A;  4NB9 D;  4QUR A;  4NBA D;  4NBC D;  3GTS A;  2ZT9 D;  2BMO A;  1NU1 E;  5KKZ C;  2HMN A;  4HM2 A;  1JM1 A;  2HMM A;  4H44 D;  3GKQ A;  2NVE A;  1L0N E;  2GBW A;  3VMG D;  4QDF B;  4QDC A;  4H13 D;  2E74 D;  2YFL A;  3EN1 A;  1ULI A;  2BCC E;  4HM1 A;  2NUK A;  3VMI D;  1Z03 A;  4NB8 D;  1Q90 C;  1Z01 A;  5CXM A;  1NTK E;  2XSH A;  1VF5 D;  3DQY A;  4HM0 A;  5AEW A;  4OGQ D;  1VCK A;  3VCA A;  3N0Q A;  3GKE A;  2QJP C;  2XR8 A;  1Z02 A;  1FQT A;  1VM9 A;  1UUW A;  2FYU E;  4NBE A;  5BOK A;  4NBB A;  1G8J B;  4NBF A;  4NBF D;  3C0D A;  1ULJ A;  3H1I E;  3EQQ A;  4H0L D;  4HM8 A;  4NBD A;  4NBD D;  4QUQ A;  3GOB A;  5AEU A;  2E4P A;  2QPZ A;  4QDF A;  2XSO A;  5KLI C;  1RFS A;  1UUV A;  4QCK A;  2ZYL A;  4NBG A;  1PPJ E;  2E76 D;  1KYO E;  1O7N A;  2A06 E;  3D89 A;  1SQQ E; 
#chains in the Genus database with same CATH homology
 3VMH A;  3GTE A;  3GZY A;  3CX5 E;  4HM7 A;  1O7M A;  3GCF A;  3VCP A;  1SQB E;  4HM4 A;  2DE7 A;  2GBX A;  3BCC E;  2DE7 D;  1NTM E;  1WW9 A;  2NUM A;  2BMQ A;  3L73 E;  2NVG A;  2Q3W A;  3H1L E;  4NBE D;  3H1K E;  4NBB D;  2D2C D;  1O7G A;  4PD4 E;  4NBH A;  4QUP A;  2HML A;  4EMJ B;  4HM6 A;  4HM5 A;  3FOU A;  1SQP E;  1NDO A;  4HJL A;  5KLV E;  3CWB E;  1RIE A;  5HL4 A;  2HMO A;  2DE5 A;  2HMK A;  2IBZ E;  2YIU C;  2QJY C;  1O7W A;  4HM3 A;  4NBG D;  3H1J E;  1P84 E;  2B24 A;  3CXH E;  3VMH D;  1PP9 E;  2CKF A;  2E4Q A;  3L72 E;  3L70 E;  3L74 E;  1BCC E;  4NBA A;  1NYK A;  4NBC A;  3GL0 A;  4PV1 D;  1O7H A;  2JZA A;  2JO6 A;  1O7P A;  3AZC A;  4AIV A;  1SJG A;  4P1B H;  2HMJ A;  3VMG A;  2YVJ B;  3GCE A;  4HKV A;  3H1H E;  1NTZ E;  4NBH D;  4U3F E;  2XRX A;  4P1C H;  3GL2 A;  2YFI A;  2DE6 A;  2DE6 D;  2B1X A;  2E75 D;  4QDD A;  3L71 E;  3VMI A;  4NB8 A;  3TGU E;  1EG9 A;  1SQV E;  2FYN C;  2DE5 D;  1BE3 E;  3GB4 A;  2I7F A;  3L75 E;  1WQL A;  1EZV E;  2BMR A;  1G8K B;  1KB9 E;  2NVF A;  1ZRT E;  2QJK C;  1SQX E;  1L0L E;  3GZX A;  2NWF A;  4AAY B;  2YFJ A;  4NB9 A;  4NB9 D;  4QUR A;  4NBA D;  4NBC D;  3GTS A;  2ZT9 D;  2BMO A;  1NU1 E;  5KKZ C;  2HMN A;  4HM2 A;  1JM1 A;  2HMM A;  4H44 D;  3GKQ A;  2NVE A;  1L0N E;  2GBW A;  3VMG D;  4QDF B;  4QDC A;  4H13 D;  2E74 D;  2YFL A;  3EN1 A;  1ULI A;  2BCC E;  4HM1 A;  2NUK A;  3VMI D;  1Z03 A;  4NB8 D;  1Q90 C;  1Z01 A;  5CXM A;  1NTK E;  2XSH A;  1VF5 D;  3DQY A;  4HM0 A;  5AEW A;  4OGQ D;  1VCK A;  3VCA A;  3N0Q A;  3GKE A;  2QJP C;  2XR8 A;  1Z02 A;  1FQT A;  1VM9 A;  1UUW A;  2FYU E;  4NBE A;  5BOK A;  4NBB A;  1G8J B;  4NBF A;  4NBF D;  3C0D A;  1ULJ A;  3H1I E;  3EQQ A;  4H0L D;  4HM8 A;  4NBD A;  4NBD D;  4QUQ A;  3GOB A;  5AEU A;  2E4P A;  2QPZ A;  4QDF A;  2XSO A;  5KLI C;  1RFS A;  1UUV A;  4QCK A;  2ZYL A;  4NBG A;  1PPJ E;  2E76 D;  1KYO E;  1O7N A;  2A06 E;  3D89 A;  1SQQ E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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