5HL4A

Acoustic injectors for drop-on-demand serial femtosecond crystallography
Total Genus 108
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
108
sequence length
401
structure length
397
Chain Sequence
TSIHQRLDRRLSGFSLEQPFYTSPEVYALDLQHIFYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAFHNSCRHRGSLICKARQGQVAKLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNLDGLIYICLSDTPPDFQTFAQLARPYLEVHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPLDPEVAGVGVSKKLQAHFDRCEAAGTPAQFVLAGDGQYRLARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHFLPDHSLTFRVMPISPTETEVTTTWLVHKDAVEGVDYDLKRLTEVWIATNDEDREIVETNQQGILSPAYVPGPYSPGQESGVMQFVDWYAASLERALAP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
source organism Sinorhizobium meliloti 1021
publication title Acoustic Injectors for Drop-On-Demand Serial Femtosecond Crystallography.
pubmed doi rcsb
molecule keywords Ring-hydroxylating dioxygenase
total genus 108
structure length 397
sequence length 401
ec nomenclature
pdb deposition date 2016-01-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 5hl4A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 5hl4A01
4EMJB 1RFSA 3GOBA 2FYUE 4NBAD 1O7GA 2Q3WA 1O7HA 2BMQA 5HL4A 1Z03A 1G8KB 2JZAA 2BMRA 3H1KE 4OGQD 1PP9E 2YFLA 3VMIA 4NBFA 3CXHE 1ZRTE 3L71E 2HMKA 2GBWA 2QJPC 4HM7A 4NBDA 1VCKA 4HJLA 4NBED 1JM1A 2ZT9D 4PD4E 4NBFD 2NUMA 2XR8A 5KKZC 2QPZA 1RIEA 1O7MA 1ULIA 1SQBE 3GL2A 5CXMA 3GCEA 3VMGD 1SJGA 3AZCA 3H1IE 4NBCD 4PV1D 3GB4A 1WW9A 4HM4A 2BMOA 3GKEA 1NYKA 3L70E 4NBGA 2YIUC 3H1HE 3CX5E 2XRXA 4HM8A 1ULJA 1FQTA 3FOUA 2XSHA 4U3FE 2HMOA 5KLIC 1WQLA 3BCCE 3C0DA 4HKVA 4QURA 1KB9E 1SQXE 2D2CD 3VMID 3VCPA 1Q90C 2HMJA 3GCFA 3GTEA 2HMLA 3H1LE 4NBDD 4HM6A 4NB9A 3N0QA 4QDFA 3GKQA 2E4QA 1UUVA 3L72E 1Z01A 2ZYLA 4NB8A 4QDDA 4HM5A 2E76D 1EG9A 4NBHA 2NVEA 5AEUA 2B1XA 2YFIA 1SQVE 4QDFB 2E75D 4QDCA 2QJYC 2CKFA 4P1BH 5AEWA 4P1CH 4NBGD 2HMNA 2NVFA 1L0LE 3TGUE 2DE5A 2FYNC 3DQYA 3L75E 4NBBA 4HM0A 4H0LD 2YFJA 1P84E 2IBZE 2DE6A 3VMHA 1L0NE 1VM9A 2DE7A 1NTZE 1UUWA 4H44D 4QCKA 3EQQA 2DE6D 1NDOA 2XSOA 1KYOE 4NBAA 4HM2A 3CWBE 3GL0A 4QUPA 3L74E 2JO6A 1SQPE 2QJKC 2NUKA 2A06E 4NB9D 2I7FA 1BE3E 2E74D 4HM1A 4NBEA 1NU1E 3H1JE 4NB8D 3D89A 1O7NA 2NVGA 3GZXA 1O7PA 4NBHD 5BOKA 1EZVE 3GTSA 1G8JB 1Z02A 1BCCE 2BCCE 3VMGA 2B24A 3GZYA 2YVJB 4NBCA 3L73E 4AIVA 2DE5D 2GBXA 3VCAA 2E4PA 1SQQE 4NBBD 1NTME 4AAYB 1PPJE 1NTKE 2NWFA 3VMHD 1O7WA 1VF5D 3EN1A 4H13D 2DE7D 2HMMA 5KLVE 4QUQA 4HM3A
chains in the Genus database with same CATH superfamily
4EMJB 1RFSA 3GOBA 2FYUE 4NBAD 1O7GA 2Q3WA 1O7HA 2BMQA 5HL4A 1Z03A 1G8KB 2JZAA 2BMRA 3H1KE 4OGQD 1PP9E 2YFLA 3VMIA 4NBFA 3CXHE 1ZRTE 3L71E 2HMKA 2GBWA 2QJPC 4HM7A 4NBDA 1VCKA 4HJLA 4NBED 1JM1A 2ZT9D 4PD4E 4NBFD 2NUMA 2XR8A 5KKZC 2QPZA 1RIEA 1O7MA 1ULIA 1SQBE 3GL2A 5CXMA 3GCEA 3VMGD 1SJGA 3AZCA 3H1IE 4NBCD 4PV1D 3GB4A 1WW9A 4HM4A 2BMOA 3GKEA 1NYKA 3L70E 4NBGA 2YIUC 3H1HE 3CX5E 2XRXA 4HM8A 1ULJA 1FQTA 3FOUA 2XSHA 4U3FE 2HMOA 5KLIC 1WQLA 3BCCE 3C0DA 4HKVA 4QURA 1KB9E 1SQXE 2D2CD 3VMID 3VCPA 1Q90C 2HMJA 3GCFA 3GTEA 2HMLA 3H1LE 4NBDD 4HM6A 4NB9A 3N0QA 4QDFA 3GKQA 2E4QA 1UUVA 3L72E 1Z01A 2ZYLA 4NB8A 4QDDA 4HM5A 2E76D 1EG9A 4NBHA 2NVEA 5AEUA 2B1XA 2YFIA 1SQVE 4QDFB 2E75D 4QDCA 2QJYC 2CKFA 4P1BH 5AEWA 4P1CH 4NBGD 2HMNA 2NVFA 1L0LE 3TGUE 2DE5A 2FYNC 3DQYA 3L75E 4NBBA 4HM0A 4H0LD 2YFJA 1P84E 2IBZE 2DE6A 3VMHA 1L0NE 1VM9A 2DE7A 1NTZE 1UUWA 4H44D 4QCKA 3EQQA 2DE6D 1NDOA 2XSOA 1KYOE 4NBAA 4HM2A 3CWBE 3GL0A 4QUPA 3L74E 2JO6A 1SQPE 2QJKC 2NUKA 2A06E 4NB9D 2I7FA 1BE3E 2E74D 4HM1A 4NBEA 1NU1E 3H1JE 4NB8D 3D89A 1O7NA 2NVGA 3GZXA 1O7PA 4NBHD 5BOKA 1EZVE 3GTSA 1G8JB 1Z02A 1BCCE 2BCCE 3VMGA 2B24A 3GZYA 2YVJB 4NBCA 3L73E 4AIVA 2DE5D 2GBXA 3VCAA 2E4PA 1SQQE 4NBBD 1NTME 4AAYB 1PPJE 1NTKE 2NWFA 3VMHD 1O7WA 1VF5D 3EN1A 4H13D 2DE7D 2HMMA 5KLVE 4QUQA 4HM3A
chains in the Genus database with same CATH topology
4EMJB 1RFSA 3GOBA 2FYUE 4NBAD 1O7GA 2Q3WA 1O7HA 2BMQA 5HL4A 1Z03A 1G8KB 2JZAA 2BMRA 3H1KE 4OGQD 1PP9E 2YFLA 3VMIA 4NBFA 3CXHE 1ZRTE 3L71E 2HMKA 2GBWA 2QJPC 4HM7A 4NBDA 1VCKA 4HJLA 4NBED 1JM1A 2ZT9D 4PD4E 4NBFD 2NUMA 2XR8A 5KKZC 2QPZA 1RIEA 1O7MA 1ULIA 1SQBE 3GL2A 5CXMA 3GCEA 3VMGD 1SJGA 3AZCA 3H1IE 4NBCD 4PV1D 3GB4A 1WW9A 4HM4A 2BMOA 3GKEA 1NYKA 3L70E 4NBGA 2YIUC 3H1HE 3CX5E 2XRXA 4HM8A 1ULJA 1FQTA 3FOUA 2XSHA 4U3FE 2HMOA 5KLIC 1WQLA 3BCCE 3C0DA 4HKVA 4QURA 1KB9E 1SQXE 2D2CD 3VMID 3VCPA 1Q90C 2HMJA 3GCFA 3GTEA 2HMLA 3H1LE 4NBDD 4HM6A 4NB9A 3N0QA 4QDFA 3GKQA 2E4QA 1UUVA 3L72E 1Z01A 2ZYLA 4NB8A 4QDDA 4HM5A 2E76D 1EG9A 4NBHA 2NVEA 5AEUA 2B1XA 2YFIA 1SQVE 4QDFB 2E75D 4QDCA 2QJYC 2CKFA 4P1BH 5AEWA 4P1CH 4NBGD 2HMNA 2NVFA 1L0LE 3TGUE 2DE5A 2FYNC 3DQYA 3L75E 4NBBA 4HM0A 4H0LD 2YFJA 1P84E 2IBZE 2DE6A 3VMHA 1L0NE 1VM9A 2DE7A 1NTZE 1UUWA 4H44D 4QCKA 3EQQA 2DE6D 1NDOA 2XSOA 1KYOE 4NBAA 4HM2A 3CWBE 3GL0A 4QUPA 3L74E 2JO6A 1SQPE 2QJKC 2NUKA 2A06E 4NB9D 2I7FA 1BE3E 2E74D 4HM1A 4NBEA 1NU1E 3H1JE 4NB8D 3D89A 1O7NA 2NVGA 3GZXA 1O7PA 4NBHD 5BOKA 1EZVE 3GTSA 1G8JB 1Z02A 1BCCE 2BCCE 3VMGA 2B24A 3GZYA 2YVJB 4NBCA 3L73E 4AIVA 2DE5D 2GBXA 3VCAA 2E4PA 1SQQE 4NBBD 1NTME 4AAYB 1PPJE 1NTKE 2NWFA 3VMHD 1O7WA 1VF5D 3EN1A 4H13D 2DE7D 2HMMA 5KLVE 4QUQA 4HM3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EMJ B;  1RFS A;  3GOB A;  2FYU E;  4NBA D;  1O7G A;  2Q3W A;  1O7H A;  2BMQ A;  5HL4 A;  1Z03 A;  1G8K B;  2JZA A;  2BMR A;  3H1K E;  4OGQ D;  1PP9 E;  2YFL A;  3VMI A;  4NBF A;  3CXH E;  1ZRT E;  3L71 E;  2HMK A;  2GBW A;  2QJP C;  4HM7 A;  4NBD A;  1VCK A;  4HJL A;  4NBE D;  1JM1 A;  2ZT9 D;  4PD4 E;  4NBF D;  2NUM A;  2XR8 A;  5KKZ C;  2QPZ A;  1RIE A;  1O7M A;  1ULI A;  1SQB E;  3GL2 A;  5CXM A;  3GCE A;  3VMG D;  1SJG A;  3AZC A;  3H1I E;  4NBC D;  4PV1 D;  3GB4 A;  1WW9 A;  4HM4 A;  2BMO A;  3GKE A;  1NYK A;  3L70 E;  4NBG A;  2YIU C;  3H1H E;  3CX5 E;  2XRX A;  4HM8 A;  1ULJ A;  1FQT A;  3FOU A;  2XSH A;  4U3F E;  2HMO A;  5KLI C;  1WQL A;  3BCC E;  3C0D A;  4HKV A;  4QUR A;  1KB9 E;  1SQX E;  2D2C D;  3VMI D;  3VCP A;  1Q90 C;  2HMJ A;  3GCF A;  3GTE A;  2HML A;  3H1L E;  4NBD D;  4HM6 A;  4NB9 A;  3N0Q A;  4QDF A;  3GKQ A;  2E4Q A;  1UUV A;  3L72 E;  1Z01 A;  2ZYL A;  4NB8 A;  4QDD A;  4HM5 A;  2E76 D;  1EG9 A;  4NBH A;  2NVE A;  5AEU A;  2B1X A;  2YFI A;  1SQV E;  4QDF B;  2E75 D;  4QDC A;  2QJY C;  2CKF A;  4P1B H;  5AEW A;  4P1C H;  4NBG D;  2HMN A;  2NVF A;  1L0L E;  3TGU E;  2DE5 A;  2FYN C;  3DQY A;  3L75 E;  4NBB A;  4HM0 A;  4H0L D;  2YFJ A;  1P84 E;  2IBZ E;  2DE6 A;  3VMH A;  1L0N E;  1VM9 A;  2DE7 A;  1NTZ E;  1UUW A;  4H44 D;  4QCK A;  3EQQ A;  2DE6 D;  1NDO A;  2XSO A;  1KYO E;  4NBA A;  4HM2 A;  3CWB E;  3GL0 A;  4QUP A;  3L74 E;  2JO6 A;  1SQP E;  2QJK C;  2NUK A;  2A06 E;  4NB9 D;  2I7F A;  1BE3 E;  2E74 D;  4HM1 A;  4NBE A;  1NU1 E;  3H1J E;  4NB8 D;  3D89 A;  1O7N A;  2NVG A;  3GZX A;  1O7P A;  4NBH D;  5BOK A;  1EZV E;  3GTS A;  1G8J B;  1Z02 A;  1BCC E;  2BCC E;  3VMG A;  2B24 A;  3GZY A;  2YVJ B;  4NBC A;  3L73 E;  4AIV A;  2DE5 D;  2GBX A;  3VCA A;  2E4P A;  1SQQ E;  4NBB D;  1NTM E;  4AAY B;  1PPJ E;  1NTK E;  2NWF A;  3VMH D;  1O7W A;  1VF5 D;  3EN1 A;  4H13 D;  2DE7 D;  2HMM A;  5KLV E;  4QUQ A;  4HM3 A; 
#chains in the Genus database with same CATH topology
 4EMJ B;  1RFS A;  3GOB A;  2FYU E;  4NBA D;  1O7G A;  2Q3W A;  1O7H A;  2BMQ A;  5HL4 A;  1Z03 A;  1G8K B;  2JZA A;  2BMR A;  3H1K E;  4OGQ D;  1PP9 E;  2YFL A;  3VMI A;  4NBF A;  3CXH E;  1ZRT E;  3L71 E;  2HMK A;  2GBW A;  2QJP C;  4HM7 A;  4NBD A;  1VCK A;  4HJL A;  4NBE D;  1JM1 A;  2ZT9 D;  4PD4 E;  4NBF D;  2NUM A;  2XR8 A;  5KKZ C;  2QPZ A;  1RIE A;  1O7M A;  1ULI A;  1SQB E;  3GL2 A;  5CXM A;  3GCE A;  3VMG D;  1SJG A;  3AZC A;  3H1I E;  4NBC D;  4PV1 D;  3GB4 A;  1WW9 A;  4HM4 A;  2BMO A;  3GKE A;  1NYK A;  3L70 E;  4NBG A;  2YIU C;  3H1H E;  3CX5 E;  2XRX A;  4HM8 A;  1ULJ A;  1FQT A;  3FOU A;  2XSH A;  4U3F E;  2HMO A;  5KLI C;  1WQL A;  3BCC E;  3C0D A;  4HKV A;  4QUR A;  1KB9 E;  1SQX E;  2D2C D;  3VMI D;  3VCP A;  1Q90 C;  2HMJ A;  3GCF A;  3GTE A;  2HML A;  3H1L E;  4NBD D;  4HM6 A;  4NB9 A;  3N0Q A;  4QDF A;  3GKQ A;  2E4Q A;  1UUV A;  3L72 E;  1Z01 A;  2ZYL A;  4NB8 A;  4QDD A;  4HM5 A;  2E76 D;  1EG9 A;  4NBH A;  2NVE A;  5AEU A;  2B1X A;  2YFI A;  1SQV E;  4QDF B;  2E75 D;  4QDC A;  2QJY C;  2CKF A;  4P1B H;  5AEW A;  4P1C H;  4NBG D;  2HMN A;  2NVF A;  1L0L E;  3TGU E;  2DE5 A;  2FYN C;  3DQY A;  3L75 E;  4NBB A;  4HM0 A;  4H0L D;  2YFJ A;  1P84 E;  2IBZ E;  2DE6 A;  3VMH A;  1L0N E;  1VM9 A;  2DE7 A;  1NTZ E;  1UUW A;  4H44 D;  4QCK A;  3EQQ A;  2DE6 D;  1NDO A;  2XSO A;  1KYO E;  4NBA A;  4HM2 A;  3CWB E;  3GL0 A;  4QUP A;  3L74 E;  2JO6 A;  1SQP E;  2QJK C;  2NUK A;  2A06 E;  4NB9 D;  2I7F A;  1BE3 E;  2E74 D;  4HM1 A;  4NBE A;  1NU1 E;  3H1J E;  4NB8 D;  3D89 A;  1O7N A;  2NVG A;  3GZX A;  1O7P A;  4NBH D;  5BOK A;  1EZV E;  3GTS A;  1G8J B;  1Z02 A;  1BCC E;  2BCC E;  3VMG A;  2B24 A;  3GZY A;  2YVJ B;  4NBC A;  3L73 E;  4AIV A;  2DE5 D;  2GBX A;  3VCA A;  2E4P A;  1SQQ E;  4NBB D;  1NTM E;  4AAY B;  1PPJ E;  1NTK E;  2NWF A;  3VMH D;  1O7W A;  1VF5 D;  3EN1 A;  4H13 D;  2DE7 D;  2HMM A;  5KLV E;  4QUQ A;  4HM3 A; 
#chains in the Genus database with same CATH homology
 4EMJ B;  1RFS A;  3GOB A;  2FYU E;  4NBA D;  1O7G A;  2Q3W A;  1O7H A;  2BMQ A;  5HL4 A;  1Z03 A;  1G8K B;  2JZA A;  2BMR A;  3H1K E;  4OGQ D;  1PP9 E;  2YFL A;  3VMI A;  4NBF A;  3CXH E;  1ZRT E;  3L71 E;  2HMK A;  2GBW A;  2QJP C;  4HM7 A;  4NBD A;  1VCK A;  4HJL A;  4NBE D;  1JM1 A;  2ZT9 D;  4PD4 E;  4NBF D;  2NUM A;  2XR8 A;  5KKZ C;  2QPZ A;  1RIE A;  1O7M A;  1ULI A;  1SQB E;  3GL2 A;  5CXM A;  3GCE A;  3VMG D;  1SJG A;  3AZC A;  3H1I E;  4NBC D;  4PV1 D;  3GB4 A;  1WW9 A;  4HM4 A;  2BMO A;  3GKE A;  1NYK A;  3L70 E;  4NBG A;  2YIU C;  3H1H E;  3CX5 E;  2XRX A;  4HM8 A;  1ULJ A;  1FQT A;  3FOU A;  2XSH A;  4U3F E;  2HMO A;  5KLI C;  1WQL A;  3BCC E;  3C0D A;  4HKV A;  4QUR A;  1KB9 E;  1SQX E;  2D2C D;  3VMI D;  3VCP A;  1Q90 C;  2HMJ A;  3GCF A;  3GTE A;  2HML A;  3H1L E;  4NBD D;  4HM6 A;  4NB9 A;  3N0Q A;  4QDF A;  3GKQ A;  2E4Q A;  1UUV A;  3L72 E;  1Z01 A;  2ZYL A;  4NB8 A;  4QDD A;  4HM5 A;  2E76 D;  1EG9 A;  4NBH A;  2NVE A;  5AEU A;  2B1X A;  2YFI A;  1SQV E;  4QDF B;  2E75 D;  4QDC A;  2QJY C;  2CKF A;  4P1B H;  5AEW A;  4P1C H;  4NBG D;  2HMN A;  2NVF A;  1L0L E;  3TGU E;  2DE5 A;  2FYN C;  3DQY A;  3L75 E;  4NBB A;  4HM0 A;  4H0L D;  2YFJ A;  1P84 E;  2IBZ E;  2DE6 A;  3VMH A;  1L0N E;  1VM9 A;  2DE7 A;  1NTZ E;  1UUW A;  4H44 D;  4QCK A;  3EQQ A;  2DE6 D;  1NDO A;  2XSO A;  1KYO E;  4NBA A;  4HM2 A;  3CWB E;  3GL0 A;  4QUP A;  3L74 E;  2JO6 A;  1SQP E;  2QJK C;  2NUK A;  2A06 E;  4NB9 D;  2I7F A;  1BE3 E;  2E74 D;  4HM1 A;  4NBE A;  1NU1 E;  3H1J E;  4NB8 D;  3D89 A;  1O7N A;  2NVG A;  3GZX A;  1O7P A;  4NBH D;  5BOK A;  1EZV E;  3GTS A;  1G8J B;  1Z02 A;  1BCC E;  2BCC E;  3VMG A;  2B24 A;  3GZY A;  2YVJ B;  4NBC A;  3L73 E;  4AIV A;  2DE5 D;  2GBX A;  3VCA A;  2E4P A;  1SQQ E;  4NBB D;  1NTM E;  4AAY B;  1PPJ E;  1NTK E;  2NWF A;  3VMH D;  1O7W A;  1VF5 D;  3EN1 A;  4H13 D;  2DE7 D;  2HMM A;  5KLV E;  4QUQ A;  4HM3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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