4HM7A

Naphthalene 1,2-dioxygenase bound to styrene
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
publication title Naphthalene 1,2-Dioxygenase bound to styrene
rcsb
source organism Pseudomonas sp. c18
molecule tags Oxidoreductase/oxidoreductase inhibitor
total genus 161
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm7A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm7A01
4QURA 2JO6A 1O7NA 3GZYA 3GTSA 1SQVE 4HM7A 1G8JB 3DQYA 5AEUA 3L73E 3GB4A 4HM3A 1NDOA 3L74E 4QCKA 3VMIA 4NBAD 2XSHA 1WQLA 2YFIA 3GL0A 1PPJE 1SJGA 4HM5A 4PV1D 3GOBA 3GCFA 2E75D 4H0LD 4NBHD 3VMGD 2BMQA 4PD4E 1KB9E 4QDFA 4NBFD 1VF5D 1FQTA 2E74D 2E76D 4HM0A 2ZT9D 1UUWA 3EN1A 3H1HE 1SQQE 1L0LE 5KLIC 4NBBA 4U3FE 2QJPC 1VCKA 1SQPE 3EQQA 5KLVE 2DE6A 2FYUE 4QUQA 1JM1A 4NBGA 4NBEA 1Q90C 3CX5E 2BCCE 2XR8A 3GZXA 1Z03A 2NVGA 3L72E 2Q3WA 2DE5A 3GKEA 2HMNA 2HMOA 3C0DA 4HM2A 1UUVA 3BCCE 1EG9A 2B1XA 3H1JE 4NBCD 4NBAA 4H13D 2YIUC 4HKVA 1VM9A 4QDDA 2CKFA 3GKQA 4NBHA 1SQXE 1O7GA 4NBDD 3VCAA 4HM8A 2NVFA 3TGUE 2FYNC 3GTEA 3VMHA 3VCPA 2I7FA 1PP9E 1WW9A 1Z01A 4NB8D 4AIVA 5KKZC 1BE3E 2HMKA 1L0NE 2E4QA 1NU1E 2NVEA 3N0QA 2YFJA 2IBZE 3L71E 3VMID 2BMRA 3D89A 1O7PA 2NUMA 2QJYC 3GCEA 1O7MA 1G8KB 4P1BH 2HMLA 4HM4A 1NTKE 1NTME 4EMJB 3VMGA 2A06E 4OGQD 2DE7D 1NTZE 4NBFA 1NYKA 3CXHE 4NBDA 4NBGD 1RIEA 2DE6D 4HM6A 4NBED 1EZVE 2XSOA 3L75E 2NWFA 4NB9A 4HM1A 1KYOE 5HL4A 2ZYLA 2HMMA 2GBWA 4NB8A 4HJLA 2DE5D 4QDFB 2YFLA 3H1KE 3L70E 2YVJB 2D2CD 4H44D 3H1IE 2E4PA 3H1LE 1RFSA 1Z02A 4QDCA 2QJKC 2JZAA 4P1CH 1O7WA 1P84E 3GL2A 5CXMA 4QUPA 1O7HA 2NUKA 4AAYB 4NBCA 3FOUA 1ZRTE 3AZCA 3VMHD 4NBBD 1SQBE 2BMOA 2HMJA 2XRXA 5AEWA 2DE7A 1BCCE 1ULJA 1ULIA 4NB9D 3CWBE 2B24A 5BOKA 2GBXA 2QPZA
chains in the Genus database with same CATH superfamily
4QURA 2JO6A 1O7NA 3GZYA 3GTSA 1SQVE 4HM7A 1G8JB 3DQYA 5AEUA 3L73E 3GB4A 4HM3A 1NDOA 3L74E 4QCKA 3VMIA 4NBAD 2XSHA 1WQLA 2YFIA 3GL0A 1PPJE 1SJGA 4HM5A 4PV1D 3GOBA 3GCFA 2E75D 4H0LD 4NBHD 3VMGD 2BMQA 4PD4E 1KB9E 4QDFA 4NBFD 1VF5D 1FQTA 2E74D 2E76D 4HM0A 2ZT9D 1UUWA 3EN1A 3H1HE 1SQQE 1L0LE 5KLIC 4NBBA 4U3FE 2QJPC 1VCKA 1SQPE 3EQQA 5KLVE 2DE6A 2FYUE 4QUQA 1JM1A 4NBGA 4NBEA 1Q90C 3CX5E 2BCCE 2XR8A 3GZXA 1Z03A 2NVGA 3L72E 2Q3WA 2DE5A 3GKEA 2HMNA 2HMOA 3C0DA 4HM2A 1UUVA 3BCCE 1EG9A 2B1XA 3H1JE 4NBCD 4NBAA 4H13D 2YIUC 4HKVA 1VM9A 4QDDA 2CKFA 3GKQA 4NBHA 1SQXE 1O7GA 4NBDD 3VCAA 4HM8A 2NVFA 3TGUE 2FYNC 3GTEA 3VMHA 3VCPA 2I7FA 1PP9E 1WW9A 1Z01A 4NB8D 4AIVA 5KKZC 1BE3E 2HMKA 1L0NE 2E4QA 1NU1E 2NVEA 3N0QA 2YFJA 2IBZE 3L71E 3VMID 2BMRA 3D89A 1O7PA 2NUMA 2QJYC 3GCEA 1O7MA 1G8KB 4P1BH 2HMLA 4HM4A 1NTKE 1NTME 4EMJB 3VMGA 2A06E 4OGQD 2DE7D 1NTZE 4NBFA 1NYKA 3CXHE 4NBDA 4NBGD 1RIEA 2DE6D 4HM6A 4NBED 1EZVE 2XSOA 3L75E 2NWFA 4NB9A 4HM1A 1KYOE 5HL4A 2ZYLA 2HMMA 2GBWA 4NB8A 4HJLA 2DE5D 4QDFB 2YFLA 3H1KE 3L70E 2YVJB 2D2CD 4H44D 3H1IE 2E4PA 3H1LE 1RFSA 1Z02A 4QDCA 2QJKC 2JZAA 4P1CH 1O7WA 1P84E 3GL2A 5CXMA 4QUPA 1O7HA 2NUKA 4AAYB 4NBCA 3FOUA 1ZRTE 3AZCA 3VMHD 4NBBD 1SQBE 2BMOA 2HMJA 2XRXA 5AEWA 2DE7A 1BCCE 1ULJA 1ULIA 4NB9D 3CWBE 2B24A 5BOKA 2GBXA 2QPZA
chains in the Genus database with same CATH topology
4QURA 2JO6A 1O7NA 3GZYA 3GTSA 1SQVE 4HM7A 1G8JB 3DQYA 5AEUA 3L73E 3GB4A 4HM3A 1NDOA 3L74E 4QCKA 3VMIA 4NBAD 2XSHA 1WQLA 2YFIA 3GL0A 1PPJE 1SJGA 4HM5A 4PV1D 3GOBA 3GCFA 2E75D 4H0LD 4NBHD 3VMGD 2BMQA 4PD4E 1KB9E 4QDFA 4NBFD 1VF5D 1FQTA 2E74D 2E76D 4HM0A 2ZT9D 1UUWA 3EN1A 3H1HE 1SQQE 1L0LE 5KLIC 4NBBA 4U3FE 2QJPC 1VCKA 1SQPE 3EQQA 5KLVE 2DE6A 2FYUE 4QUQA 1JM1A 4NBGA 4NBEA 1Q90C 3CX5E 2BCCE 2XR8A 3GZXA 1Z03A 2NVGA 3L72E 2Q3WA 2DE5A 3GKEA 2HMNA 2HMOA 3C0DA 4HM2A 1UUVA 3BCCE 1EG9A 2B1XA 3H1JE 4NBCD 4NBAA 4H13D 2YIUC 4HKVA 1VM9A 4QDDA 2CKFA 3GKQA 4NBHA 1SQXE 1O7GA 4NBDD 3VCAA 4HM8A 2NVFA 3TGUE 2FYNC 3GTEA 3VMHA 3VCPA 2I7FA 1PP9E 1WW9A 1Z01A 4NB8D 4AIVA 5KKZC 1BE3E 2HMKA 1L0NE 2E4QA 1NU1E 2NVEA 3N0QA 2YFJA 2IBZE 3L71E 3VMID 2BMRA 3D89A 1O7PA 2NUMA 2QJYC 3GCEA 1O7MA 1G8KB 4P1BH 2HMLA 4HM4A 1NTKE 1NTME 4EMJB 3VMGA 2A06E 4OGQD 2DE7D 1NTZE 4NBFA 1NYKA 3CXHE 4NBDA 4NBGD 1RIEA 2DE6D 4HM6A 4NBED 1EZVE 2XSOA 3L75E 2NWFA 4NB9A 4HM1A 1KYOE 5HL4A 2ZYLA 2HMMA 2GBWA 4NB8A 4HJLA 2DE5D 4QDFB 2YFLA 3H1KE 3L70E 2YVJB 2D2CD 4H44D 3H1IE 2E4PA 3H1LE 1RFSA 1Z02A 4QDCA 2QJKC 2JZAA 4P1CH 1O7WA 1P84E 3GL2A 5CXMA 4QUPA 1O7HA 2NUKA 4AAYB 4NBCA 3FOUA 1ZRTE 3AZCA 3VMHD 4NBBD 1SQBE 2BMOA 2HMJA 2XRXA 5AEWA 2DE7A 1BCCE 1ULJA 1ULIA 4NB9D 3CWBE 2B24A 5BOKA 2GBXA 2QPZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QUR A;  2JO6 A;  1O7N A;  3GZY A;  3GTS A;  1SQV E;  4HM7 A;  1G8J B;  3DQY A;  5AEU A;  3L73 E;  3GB4 A;  4HM3 A;  1NDO A;  3L74 E;  4QCK A;  3VMI A;  4NBA D;  2XSH A;  1WQL A;  2YFI A;  3GL0 A;  1PPJ E;  1SJG A;  4HM5 A;  4PV1 D;  3GOB A;  3GCF A;  2E75 D;  4H0L D;  4NBH D;  3VMG D;  2BMQ A;  4PD4 E;  1KB9 E;  4QDF A;  4NBF D;  1VF5 D;  1FQT A;  2E74 D;  2E76 D;  4HM0 A;  2ZT9 D;  1UUW A;  3EN1 A;  3H1H E;  1SQQ E;  1L0L E;  5KLI C;  4NBB A;  4U3F E;  2QJP C;  1VCK A;  1SQP E;  3EQQ A;  5KLV E;  2DE6 A;  2FYU E;  4QUQ A;  1JM1 A;  4NBG A;  4NBE A;  1Q90 C;  3CX5 E;  2BCC E;  2XR8 A;  3GZX A;  1Z03 A;  2NVG A;  3L72 E;  2Q3W A;  2DE5 A;  3GKE A;  2HMN A;  2HMO A;  3C0D A;  4HM2 A;  1UUV A;  3BCC E;  1EG9 A;  2B1X A;  3H1J E;  4NBC D;  4NBA A;  4H13 D;  2YIU C;  4HKV A;  1VM9 A;  4QDD A;  2CKF A;  3GKQ A;  4NBH A;  1SQX E;  1O7G A;  4NBD D;  3VCA A;  4HM8 A;  2NVF A;  3TGU E;  2FYN C;  3GTE A;  3VMH A;  3VCP A;  2I7F A;  1PP9 E;  1WW9 A;  1Z01 A;  4NB8 D;  4AIV A;  5KKZ C;  1BE3 E;  2HMK A;  1L0N E;  2E4Q A;  1NU1 E;  2NVE A;  3N0Q A;  2YFJ A;  2IBZ E;  3L71 E;  3VMI D;  2BMR A;  3D89 A;  1O7P A;  2NUM A;  2QJY C;  3GCE A;  1O7M A;  1G8K B;  4P1B H;  2HML A;  4HM4 A;  1NTK E;  1NTM E;  4EMJ B;  3VMG A;  2A06 E;  4OGQ D;  2DE7 D;  1NTZ E;  4NBF A;  1NYK A;  3CXH E;  4NBD A;  4NBG D;  1RIE A;  2DE6 D;  4HM6 A;  4NBE D;  1EZV E;  2XSO A;  3L75 E;  2NWF A;  4NB9 A;  4HM1 A;  1KYO E;  5HL4 A;  2ZYL A;  2HMM A;  2GBW A;  4NB8 A;  4HJL A;  2DE5 D;  4QDF B;  2YFL A;  3H1K E;  3L70 E;  2YVJ B;  2D2C D;  4H44 D;  3H1I E;  2E4P A;  3H1L E;  1RFS A;  1Z02 A;  4QDC A;  2QJK C;  2JZA A;  4P1C H;  1O7W A;  1P84 E;  3GL2 A;  5CXM A;  4QUP A;  1O7H A;  2NUK A;  4AAY B;  4NBC A;  3FOU A;  1ZRT E;  3AZC A;  3VMH D;  4NBB D;  1SQB E;  2BMO A;  2HMJ A;  2XRX A;  5AEW A;  2DE7 A;  1BCC E;  1ULJ A;  1ULI A;  4NB9 D;  3CWB E;  2B24 A;  5BOK A;  2GBX A;  2QPZ A; 
#chains in the Genus database with same CATH topology
 4QUR A;  2JO6 A;  1O7N A;  3GZY A;  3GTS A;  1SQV E;  4HM7 A;  1G8J B;  3DQY A;  5AEU A;  3L73 E;  3GB4 A;  4HM3 A;  1NDO A;  3L74 E;  4QCK A;  3VMI A;  4NBA D;  2XSH A;  1WQL A;  2YFI A;  3GL0 A;  1PPJ E;  1SJG A;  4HM5 A;  4PV1 D;  3GOB A;  3GCF A;  2E75 D;  4H0L D;  4NBH D;  3VMG D;  2BMQ A;  4PD4 E;  1KB9 E;  4QDF A;  4NBF D;  1VF5 D;  1FQT A;  2E74 D;  2E76 D;  4HM0 A;  2ZT9 D;  1UUW A;  3EN1 A;  3H1H E;  1SQQ E;  1L0L E;  5KLI C;  4NBB A;  4U3F E;  2QJP C;  1VCK A;  1SQP E;  3EQQ A;  5KLV E;  2DE6 A;  2FYU E;  4QUQ A;  1JM1 A;  4NBG A;  4NBE A;  1Q90 C;  3CX5 E;  2BCC E;  2XR8 A;  3GZX A;  1Z03 A;  2NVG A;  3L72 E;  2Q3W A;  2DE5 A;  3GKE A;  2HMN A;  2HMO A;  3C0D A;  4HM2 A;  1UUV A;  3BCC E;  1EG9 A;  2B1X A;  3H1J E;  4NBC D;  4NBA A;  4H13 D;  2YIU C;  4HKV A;  1VM9 A;  4QDD A;  2CKF A;  3GKQ A;  4NBH A;  1SQX E;  1O7G A;  4NBD D;  3VCA A;  4HM8 A;  2NVF A;  3TGU E;  2FYN C;  3GTE A;  3VMH A;  3VCP A;  2I7F A;  1PP9 E;  1WW9 A;  1Z01 A;  4NB8 D;  4AIV A;  5KKZ C;  1BE3 E;  2HMK A;  1L0N E;  2E4Q A;  1NU1 E;  2NVE A;  3N0Q A;  2YFJ A;  2IBZ E;  3L71 E;  3VMI D;  2BMR A;  3D89 A;  1O7P A;  2NUM A;  2QJY C;  3GCE A;  1O7M A;  1G8K B;  4P1B H;  2HML A;  4HM4 A;  1NTK E;  1NTM E;  4EMJ B;  3VMG A;  2A06 E;  4OGQ D;  2DE7 D;  1NTZ E;  4NBF A;  1NYK A;  3CXH E;  4NBD A;  4NBG D;  1RIE A;  2DE6 D;  4HM6 A;  4NBE D;  1EZV E;  2XSO A;  3L75 E;  2NWF A;  4NB9 A;  4HM1 A;  1KYO E;  5HL4 A;  2ZYL A;  2HMM A;  2GBW A;  4NB8 A;  4HJL A;  2DE5 D;  4QDF B;  2YFL A;  3H1K E;  3L70 E;  2YVJ B;  2D2C D;  4H44 D;  3H1I E;  2E4P A;  3H1L E;  1RFS A;  1Z02 A;  4QDC A;  2QJK C;  2JZA A;  4P1C H;  1O7W A;  1P84 E;  3GL2 A;  5CXM A;  4QUP A;  1O7H A;  2NUK A;  4AAY B;  4NBC A;  3FOU A;  1ZRT E;  3AZC A;  3VMH D;  4NBB D;  1SQB E;  2BMO A;  2HMJ A;  2XRX A;  5AEW A;  2DE7 A;  1BCC E;  1ULJ A;  1ULI A;  4NB9 D;  3CWB E;  2B24 A;  5BOK A;  2GBX A;  2QPZ A; 
#chains in the Genus database with same CATH homology
 4QUR A;  2JO6 A;  1O7N A;  3GZY A;  3GTS A;  1SQV E;  4HM7 A;  1G8J B;  3DQY A;  5AEU A;  3L73 E;  3GB4 A;  4HM3 A;  1NDO A;  3L74 E;  4QCK A;  3VMI A;  4NBA D;  2XSH A;  1WQL A;  2YFI A;  3GL0 A;  1PPJ E;  1SJG A;  4HM5 A;  4PV1 D;  3GOB A;  3GCF A;  2E75 D;  4H0L D;  4NBH D;  3VMG D;  2BMQ A;  4PD4 E;  1KB9 E;  4QDF A;  4NBF D;  1VF5 D;  1FQT A;  2E74 D;  2E76 D;  4HM0 A;  2ZT9 D;  1UUW A;  3EN1 A;  3H1H E;  1SQQ E;  1L0L E;  5KLI C;  4NBB A;  4U3F E;  2QJP C;  1VCK A;  1SQP E;  3EQQ A;  5KLV E;  2DE6 A;  2FYU E;  4QUQ A;  1JM1 A;  4NBG A;  4NBE A;  1Q90 C;  3CX5 E;  2BCC E;  2XR8 A;  3GZX A;  1Z03 A;  2NVG A;  3L72 E;  2Q3W A;  2DE5 A;  3GKE A;  2HMN A;  2HMO A;  3C0D A;  4HM2 A;  1UUV A;  3BCC E;  1EG9 A;  2B1X A;  3H1J E;  4NBC D;  4NBA A;  4H13 D;  2YIU C;  4HKV A;  1VM9 A;  4QDD A;  2CKF A;  3GKQ A;  4NBH A;  1SQX E;  1O7G A;  4NBD D;  3VCA A;  4HM8 A;  2NVF A;  3TGU E;  2FYN C;  3GTE A;  3VMH A;  3VCP A;  2I7F A;  1PP9 E;  1WW9 A;  1Z01 A;  4NB8 D;  4AIV A;  5KKZ C;  1BE3 E;  2HMK A;  1L0N E;  2E4Q A;  1NU1 E;  2NVE A;  3N0Q A;  2YFJ A;  2IBZ E;  3L71 E;  3VMI D;  2BMR A;  3D89 A;  1O7P A;  2NUM A;  2QJY C;  3GCE A;  1O7M A;  1G8K B;  4P1B H;  2HML A;  4HM4 A;  1NTK E;  1NTM E;  4EMJ B;  3VMG A;  2A06 E;  4OGQ D;  2DE7 D;  1NTZ E;  4NBF A;  1NYK A;  3CXH E;  4NBD A;  4NBG D;  1RIE A;  2DE6 D;  4HM6 A;  4NBE D;  1EZV E;  2XSO A;  3L75 E;  2NWF A;  4NB9 A;  4HM1 A;  1KYO E;  5HL4 A;  2ZYL A;  2HMM A;  2GBW A;  4NB8 A;  4HJL A;  2DE5 D;  4QDF B;  2YFL A;  3H1K E;  3L70 E;  2YVJ B;  2D2C D;  4H44 D;  3H1I E;  2E4P A;  3H1L E;  1RFS A;  1Z02 A;  4QDC A;  2QJK C;  2JZA A;  4P1C H;  1O7W A;  1P84 E;  3GL2 A;  5CXM A;  4QUP A;  1O7H A;  2NUK A;  4AAY B;  4NBC A;  3FOU A;  1ZRT E;  3AZC A;  3VMH D;  4NBB D;  1SQB E;  2BMO A;  2HMJ A;  2XRX A;  5AEW A;  2DE7 A;  1BCC E;  1ULJ A;  1ULI A;  4NB9 D;  3CWB E;  2B24 A;  5BOK A;  2GBX A;  2QPZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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