4HM7A

Naphthalene 1,2-dioxygenase bound to styrene
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase/oxidoreductase inhibitor
molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
publication title Naphthalene 1,2-Dioxygenase bound to styrene
rcsb
source organism Pseudomonas sp. c18
total genus 161
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm7A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm7A01
1SQVE 3TGUE 2DE5D 3AZCA 3GTSA 3BCCE 4AAYB 4NBFD 4AIVA 1KB9E 2YFLA 3GZXA 1RFSA 3H1IE 2NWFA 4HKVA 4QDFA 2QPZA 4HM7A 2NVGA 5CXMA 2YFJA 1BE3E 4QUPA 3H1HE 2JZAA 4HM1A 1G8JB 3FOUA 4QUQA 4NBAA 4U3FE 3GTEA 1O7PA 1VF5D 4P1BH 2E4PA 2E76D 2HMNA 4H13D 2YFIA 3H1LE 4NB9A 4NBAD 1JM1A 4NBHA 3L75E 1VCKA 3GKEA 2ZT9D 1O7MA 4HM8A 3L73E 3H1JE 1P84E 2XRXA 2XSOA 4NB9D 4NB8A 2NUMA 3GOBA 4NBHD 2NUKA 4H44D 4QDDA 4NBBA 1NTKE 2FYUE 4PV1D 4QDFB 2HMLA 2I7FA 4QDCA 2NVEA 1O7WA 3C0DA 1Z03A 5BOKA 1RIEA 4NB8D 2ZYLA 4HJLA 1Z02A 3GZYA 2B24A 3VCAA 4NBBD 2BMOA 4PD4E 4OGQD 1KYOE 3DQYA 1G8KB 1O7HA 3GL2A 1PPJE 4QURA 2B1XA 4EMJB 4HM4A 1NTZE 1SQXE 3CX5E 4HM2A 1PP9E 3L74E 5HL4A 3EN1A 1Q90C 2XSHA 4P1CH 2YVJB 3GCEA 2E74D 3L71E 5AEWA 2HMMA 3VMGA 2JO6A 2Q3WA 3VMIA 1O7NA 2HMJA 3VCPA 1WW9A 4QCKA 1EZVE 1SJGA 4HM5A 1NU1E 3GKQA 5KLIC 1SQQE 2BCCE 2E4QA 2E75D 3CWBE 3VMGD 3VMID 2HMOA 5KLVE 2FYNC 4NBDA 1SQBE 2QJPC 2DE6A 1WQLA 4NBGA 2NVFA 2GBXA 3GCFA 3L72E 1Z01A 1BCCE 2IBZE 4HM0A 4NBCA 3VMHA 4NBDD 3D89A 2DE6D 4NBGD 1ULIA 5KKZC 1UUVA 2CKFA 2A06E 4H0LD 3GB4A 1ZRTE 2QJKC 1EG9A 1NDOA 3GL0A 3H1KE 3N0QA 4NBCD 2DE7A 3VMHD 5AEUA 2YIUC 3L70E 1ULJA 4NBEA 2QJYC 2GBWA 1FQTA 1L0LE 3EQQA 2BMQA 2DE5A 1NYKA 1UUWA 2HMKA 1NTME 2DE7D 1O7GA 4NBFA 2BMRA 1VM9A 3CXHE 2XR8A 4HM3A 4HM6A 2D2CD 1SQPE 4NBED 1L0NE
chains in the Genus database with same CATH superfamily
1SQVE 3TGUE 2DE5D 3AZCA 3GTSA 3BCCE 4AAYB 4NBFD 4AIVA 1KB9E 2YFLA 3GZXA 1RFSA 3H1IE 2NWFA 4HKVA 4QDFA 2QPZA 4HM7A 2NVGA 5CXMA 2YFJA 1BE3E 4QUPA 3H1HE 2JZAA 4HM1A 1G8JB 3FOUA 4QUQA 4NBAA 4U3FE 3GTEA 1O7PA 1VF5D 4P1BH 2E4PA 2E76D 2HMNA 4H13D 2YFIA 3H1LE 4NB9A 4NBAD 1JM1A 4NBHA 3L75E 1VCKA 3GKEA 2ZT9D 1O7MA 4HM8A 3L73E 3H1JE 1P84E 2XRXA 2XSOA 4NB9D 4NB8A 2NUMA 3GOBA 4NBHD 2NUKA 4H44D 4QDDA 4NBBA 1NTKE 2FYUE 4PV1D 4QDFB 2HMLA 2I7FA 4QDCA 2NVEA 1O7WA 3C0DA 1Z03A 5BOKA 1RIEA 4NB8D 2ZYLA 4HJLA 1Z02A 3GZYA 2B24A 3VCAA 4NBBD 2BMOA 4PD4E 4OGQD 1KYOE 3DQYA 1G8KB 1O7HA 3GL2A 1PPJE 4QURA 2B1XA 4EMJB 4HM4A 1NTZE 1SQXE 3CX5E 4HM2A 1PP9E 3L74E 5HL4A 3EN1A 1Q90C 2XSHA 4P1CH 2YVJB 3GCEA 2E74D 3L71E 5AEWA 2HMMA 3VMGA 2JO6A 2Q3WA 3VMIA 1O7NA 2HMJA 3VCPA 1WW9A 4QCKA 1EZVE 1SJGA 4HM5A 1NU1E 3GKQA 5KLIC 1SQQE 2BCCE 2E4QA 2E75D 3CWBE 3VMGD 3VMID 2HMOA 5KLVE 2FYNC 4NBDA 1SQBE 2QJPC 2DE6A 1WQLA 4NBGA 2NVFA 2GBXA 3GCFA 3L72E 1Z01A 1BCCE 2IBZE 4HM0A 4NBCA 3VMHA 4NBDD 3D89A 2DE6D 4NBGD 1ULIA 5KKZC 1UUVA 2CKFA 2A06E 4H0LD 3GB4A 1ZRTE 2QJKC 1EG9A 1NDOA 3GL0A 3H1KE 3N0QA 4NBCD 2DE7A 3VMHD 5AEUA 2YIUC 3L70E 1ULJA 4NBEA 2QJYC 2GBWA 1FQTA 1L0LE 3EQQA 2BMQA 2DE5A 1NYKA 1UUWA 2HMKA 1NTME 2DE7D 1O7GA 4NBFA 2BMRA 1VM9A 3CXHE 2XR8A 4HM3A 4HM6A 2D2CD 1SQPE 4NBED 1L0NE
chains in the Genus database with same CATH topology
1SQVE 3TGUE 2DE5D 3AZCA 3GTSA 3BCCE 4AAYB 4NBFD 4AIVA 1KB9E 2YFLA 3GZXA 1RFSA 3H1IE 2NWFA 4HKVA 4QDFA 2QPZA 4HM7A 2NVGA 5CXMA 2YFJA 1BE3E 4QUPA 3H1HE 2JZAA 4HM1A 1G8JB 3FOUA 4QUQA 4NBAA 4U3FE 3GTEA 1O7PA 1VF5D 4P1BH 2E4PA 2E76D 2HMNA 4H13D 2YFIA 3H1LE 4NB9A 4NBAD 1JM1A 4NBHA 3L75E 1VCKA 3GKEA 2ZT9D 1O7MA 4HM8A 3L73E 3H1JE 1P84E 2XRXA 2XSOA 4NB9D 4NB8A 2NUMA 3GOBA 4NBHD 2NUKA 4H44D 4QDDA 4NBBA 1NTKE 2FYUE 4PV1D 4QDFB 2HMLA 2I7FA 4QDCA 2NVEA 1O7WA 3C0DA 1Z03A 5BOKA 1RIEA 4NB8D 2ZYLA 4HJLA 1Z02A 3GZYA 2B24A 3VCAA 4NBBD 2BMOA 4PD4E 4OGQD 1KYOE 3DQYA 1G8KB 1O7HA 3GL2A 1PPJE 4QURA 2B1XA 4EMJB 4HM4A 1NTZE 1SQXE 3CX5E 4HM2A 1PP9E 3L74E 5HL4A 3EN1A 1Q90C 2XSHA 4P1CH 2YVJB 3GCEA 2E74D 3L71E 5AEWA 2HMMA 3VMGA 2JO6A 2Q3WA 3VMIA 1O7NA 2HMJA 3VCPA 1WW9A 4QCKA 1EZVE 1SJGA 4HM5A 1NU1E 3GKQA 5KLIC 1SQQE 2BCCE 2E4QA 2E75D 3CWBE 3VMGD 3VMID 2HMOA 5KLVE 2FYNC 4NBDA 1SQBE 2QJPC 2DE6A 1WQLA 4NBGA 2NVFA 2GBXA 3GCFA 3L72E 1Z01A 1BCCE 2IBZE 4HM0A 4NBCA 3VMHA 4NBDD 3D89A 2DE6D 4NBGD 1ULIA 5KKZC 1UUVA 2CKFA 2A06E 4H0LD 3GB4A 1ZRTE 2QJKC 1EG9A 1NDOA 3GL0A 3H1KE 3N0QA 4NBCD 2DE7A 3VMHD 5AEUA 2YIUC 3L70E 1ULJA 4NBEA 2QJYC 2GBWA 1FQTA 1L0LE 3EQQA 2BMQA 2DE5A 1NYKA 1UUWA 2HMKA 1NTME 2DE7D 1O7GA 4NBFA 2BMRA 1VM9A 3CXHE 2XR8A 4HM3A 4HM6A 2D2CD 1SQPE 4NBED 1L0NE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SQV E;  3TGU E;  2DE5 D;  3AZC A;  3GTS A;  3BCC E;  4AAY B;  4NBF D;  4AIV A;  1KB9 E;  2YFL A;  3GZX A;  1RFS A;  3H1I E;  2NWF A;  4HKV A;  4QDF A;  2QPZ A;  4HM7 A;  2NVG A;  5CXM A;  2YFJ A;  1BE3 E;  4QUP A;  3H1H E;  2JZA A;  4HM1 A;  1G8J B;  3FOU A;  4QUQ A;  4NBA A;  4U3F E;  3GTE A;  1O7P A;  1VF5 D;  4P1B H;  2E4P A;  2E76 D;  2HMN A;  4H13 D;  2YFI A;  3H1L E;  4NB9 A;  4NBA D;  1JM1 A;  4NBH A;  3L75 E;  1VCK A;  3GKE A;  2ZT9 D;  1O7M A;  4HM8 A;  3L73 E;  3H1J E;  1P84 E;  2XRX A;  2XSO A;  4NB9 D;  4NB8 A;  2NUM A;  3GOB A;  4NBH D;  2NUK A;  4H44 D;  4QDD A;  4NBB A;  1NTK E;  2FYU E;  4PV1 D;  4QDF B;  2HML A;  2I7F A;  4QDC A;  2NVE A;  1O7W A;  3C0D A;  1Z03 A;  5BOK A;  1RIE A;  4NB8 D;  2ZYL A;  4HJL A;  1Z02 A;  3GZY A;  2B24 A;  3VCA A;  4NBB D;  2BMO A;  4PD4 E;  4OGQ D;  1KYO E;  3DQY A;  1G8K B;  1O7H A;  3GL2 A;  1PPJ E;  4QUR A;  2B1X A;  4EMJ B;  4HM4 A;  1NTZ E;  1SQX E;  3CX5 E;  4HM2 A;  1PP9 E;  3L74 E;  5HL4 A;  3EN1 A;  1Q90 C;  2XSH A;  4P1C H;  2YVJ B;  3GCE A;  2E74 D;  3L71 E;  5AEW A;  2HMM A;  3VMG A;  2JO6 A;  2Q3W A;  3VMI A;  1O7N A;  2HMJ A;  3VCP A;  1WW9 A;  4QCK A;  1EZV E;  1SJG A;  4HM5 A;  1NU1 E;  3GKQ A;  5KLI C;  1SQQ E;  2BCC E;  2E4Q A;  2E75 D;  3CWB E;  3VMG D;  3VMI D;  2HMO A;  5KLV E;  2FYN C;  4NBD A;  1SQB E;  2QJP C;  2DE6 A;  1WQL A;  4NBG A;  2NVF A;  2GBX A;  3GCF A;  3L72 E;  1Z01 A;  1BCC E;  2IBZ E;  4HM0 A;  4NBC A;  3VMH A;  4NBD D;  3D89 A;  2DE6 D;  4NBG D;  1ULI A;  5KKZ C;  1UUV A;  2CKF A;  2A06 E;  4H0L D;  3GB4 A;  1ZRT E;  2QJK C;  1EG9 A;  1NDO A;  3GL0 A;  3H1K E;  3N0Q A;  4NBC D;  2DE7 A;  3VMH D;  5AEU A;  2YIU C;  3L70 E;  1ULJ A;  4NBE A;  2QJY C;  2GBW A;  1FQT A;  1L0L E;  3EQQ A;  2BMQ A;  2DE5 A;  1NYK A;  1UUW A;  2HMK A;  1NTM E;  2DE7 D;  1O7G A;  4NBF A;  2BMR A;  1VM9 A;  3CXH E;  2XR8 A;  4HM3 A;  4HM6 A;  2D2C D;  1SQP E;  4NBE D;  1L0N E; 
#chains in the Genus database with same CATH topology
 1SQV E;  3TGU E;  2DE5 D;  3AZC A;  3GTS A;  3BCC E;  4AAY B;  4NBF D;  4AIV A;  1KB9 E;  2YFL A;  3GZX A;  1RFS A;  3H1I E;  2NWF A;  4HKV A;  4QDF A;  2QPZ A;  4HM7 A;  2NVG A;  5CXM A;  2YFJ A;  1BE3 E;  4QUP A;  3H1H E;  2JZA A;  4HM1 A;  1G8J B;  3FOU A;  4QUQ A;  4NBA A;  4U3F E;  3GTE A;  1O7P A;  1VF5 D;  4P1B H;  2E4P A;  2E76 D;  2HMN A;  4H13 D;  2YFI A;  3H1L E;  4NB9 A;  4NBA D;  1JM1 A;  4NBH A;  3L75 E;  1VCK A;  3GKE A;  2ZT9 D;  1O7M A;  4HM8 A;  3L73 E;  3H1J E;  1P84 E;  2XRX A;  2XSO A;  4NB9 D;  4NB8 A;  2NUM A;  3GOB A;  4NBH D;  2NUK A;  4H44 D;  4QDD A;  4NBB A;  1NTK E;  2FYU E;  4PV1 D;  4QDF B;  2HML A;  2I7F A;  4QDC A;  2NVE A;  1O7W A;  3C0D A;  1Z03 A;  5BOK A;  1RIE A;  4NB8 D;  2ZYL A;  4HJL A;  1Z02 A;  3GZY A;  2B24 A;  3VCA A;  4NBB D;  2BMO A;  4PD4 E;  4OGQ D;  1KYO E;  3DQY A;  1G8K B;  1O7H A;  3GL2 A;  1PPJ E;  4QUR A;  2B1X A;  4EMJ B;  4HM4 A;  1NTZ E;  1SQX E;  3CX5 E;  4HM2 A;  1PP9 E;  3L74 E;  5HL4 A;  3EN1 A;  1Q90 C;  2XSH A;  4P1C H;  2YVJ B;  3GCE A;  2E74 D;  3L71 E;  5AEW A;  2HMM A;  3VMG A;  2JO6 A;  2Q3W A;  3VMI A;  1O7N A;  2HMJ A;  3VCP A;  1WW9 A;  4QCK A;  1EZV E;  1SJG A;  4HM5 A;  1NU1 E;  3GKQ A;  5KLI C;  1SQQ E;  2BCC E;  2E4Q A;  2E75 D;  3CWB E;  3VMG D;  3VMI D;  2HMO A;  5KLV E;  2FYN C;  4NBD A;  1SQB E;  2QJP C;  2DE6 A;  1WQL A;  4NBG A;  2NVF A;  2GBX A;  3GCF A;  3L72 E;  1Z01 A;  1BCC E;  2IBZ E;  4HM0 A;  4NBC A;  3VMH A;  4NBD D;  3D89 A;  2DE6 D;  4NBG D;  1ULI A;  5KKZ C;  1UUV A;  2CKF A;  2A06 E;  4H0L D;  3GB4 A;  1ZRT E;  2QJK C;  1EG9 A;  1NDO A;  3GL0 A;  3H1K E;  3N0Q A;  4NBC D;  2DE7 A;  3VMH D;  5AEU A;  2YIU C;  3L70 E;  1ULJ A;  4NBE A;  2QJY C;  2GBW A;  1FQT A;  1L0L E;  3EQQ A;  2BMQ A;  2DE5 A;  1NYK A;  1UUW A;  2HMK A;  1NTM E;  2DE7 D;  1O7G A;  4NBF A;  2BMR A;  1VM9 A;  3CXH E;  2XR8 A;  4HM3 A;  4HM6 A;  2D2C D;  1SQP E;  4NBE D;  1L0N E; 
#chains in the Genus database with same CATH homology
 1SQV E;  3TGU E;  2DE5 D;  3AZC A;  3GTS A;  3BCC E;  4AAY B;  4NBF D;  4AIV A;  1KB9 E;  2YFL A;  3GZX A;  1RFS A;  3H1I E;  2NWF A;  4HKV A;  4QDF A;  2QPZ A;  4HM7 A;  2NVG A;  5CXM A;  2YFJ A;  1BE3 E;  4QUP A;  3H1H E;  2JZA A;  4HM1 A;  1G8J B;  3FOU A;  4QUQ A;  4NBA A;  4U3F E;  3GTE A;  1O7P A;  1VF5 D;  4P1B H;  2E4P A;  2E76 D;  2HMN A;  4H13 D;  2YFI A;  3H1L E;  4NB9 A;  4NBA D;  1JM1 A;  4NBH A;  3L75 E;  1VCK A;  3GKE A;  2ZT9 D;  1O7M A;  4HM8 A;  3L73 E;  3H1J E;  1P84 E;  2XRX A;  2XSO A;  4NB9 D;  4NB8 A;  2NUM A;  3GOB A;  4NBH D;  2NUK A;  4H44 D;  4QDD A;  4NBB A;  1NTK E;  2FYU E;  4PV1 D;  4QDF B;  2HML A;  2I7F A;  4QDC A;  2NVE A;  1O7W A;  3C0D A;  1Z03 A;  5BOK A;  1RIE A;  4NB8 D;  2ZYL A;  4HJL A;  1Z02 A;  3GZY A;  2B24 A;  3VCA A;  4NBB D;  2BMO A;  4PD4 E;  4OGQ D;  1KYO E;  3DQY A;  1G8K B;  1O7H A;  3GL2 A;  1PPJ E;  4QUR A;  2B1X A;  4EMJ B;  4HM4 A;  1NTZ E;  1SQX E;  3CX5 E;  4HM2 A;  1PP9 E;  3L74 E;  5HL4 A;  3EN1 A;  1Q90 C;  2XSH A;  4P1C H;  2YVJ B;  3GCE A;  2E74 D;  3L71 E;  5AEW A;  2HMM A;  3VMG A;  2JO6 A;  2Q3W A;  3VMI A;  1O7N A;  2HMJ A;  3VCP A;  1WW9 A;  4QCK A;  1EZV E;  1SJG A;  4HM5 A;  1NU1 E;  3GKQ A;  5KLI C;  1SQQ E;  2BCC E;  2E4Q A;  2E75 D;  3CWB E;  3VMG D;  3VMI D;  2HMO A;  5KLV E;  2FYN C;  4NBD A;  1SQB E;  2QJP C;  2DE6 A;  1WQL A;  4NBG A;  2NVF A;  2GBX A;  3GCF A;  3L72 E;  1Z01 A;  1BCC E;  2IBZ E;  4HM0 A;  4NBC A;  3VMH A;  4NBD D;  3D89 A;  2DE6 D;  4NBG D;  1ULI A;  5KKZ C;  1UUV A;  2CKF A;  2A06 E;  4H0L D;  3GB4 A;  1ZRT E;  2QJK C;  1EG9 A;  1NDO A;  3GL0 A;  3H1K E;  3N0Q A;  4NBC D;  2DE7 A;  3VMH D;  5AEU A;  2YIU C;  3L70 E;  1ULJ A;  4NBE A;  2QJY C;  2GBW A;  1FQT A;  1L0L E;  3EQQ A;  2BMQ A;  2DE5 A;  1NYK A;  1UUW A;  2HMK A;  1NTM E;  2DE7 D;  1O7G A;  4NBF A;  2BMR A;  1VM9 A;  3CXH E;  2XR8 A;  4HM3 A;  4HM6 A;  2D2C D;  1SQP E;  4NBE D;  1L0N E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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