2XSHA

Crystal structure of p4 variant of biphenyl dioxygenase from burkholderia xenovorans lb400 in complex with 2,6 di chlorobiphenyl
Total Genus 140
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
140
sequence length
442
structure length
433
Chain Sequence
NWTPEAIRGLVDQEKGLLDPRIYADQSLYELELERVFGRSWLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAFFDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLSQAQIPTKGNQFRAAWGGHGSGWYVDEPGSLLAVMGPKVTQYWTEGPAAELAEQRLGHTGMPVRRMVGQHMTIFPTCSFLPAMNNIRIWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPLNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMSEPSWATLKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Burkholderia xenovorans
publication title Structural Insight Into the Expanded Pcb-Degrading Abilities of a Biphenyl Dioxygenase Obtained by Directed Evolution.
pubmed doi rcsb
molecule keywords BIPHENYL DIOXYGENASE SUBUNIT ALPHA
total genus 140
structure length 433
sequence length 442
chains with identical sequence C, E, G, I, K
ec nomenclature ec 1.14.12.18: Biphenyl 2,3-dioxygenase.
pdb deposition date 2010-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2xshA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2xshA01
2E76D 3DQYA 4P1CH 5HL4A 3EN1A 4NB9D 2GBXA 3CX5E 1O7GA 5KLVE 1UUWA 2GBWA 5BOKA 2DE7A 2NVGA 3AZCA 4NBEA 1RFSA 4H44D 4OGQD 3GTEA 3GCEA 2E4PA 2BMQA 2HMJA 1PPJE 2DE5A 1NTME 3N0QA 4HM6A 2DE6A 3GCFA 3VMIA 4NBFD 4NBDD 2HMLA 1Q90C 4HM1A 3L70E 4QUPA 3VMGA 4NB8D 4NBHA 2XR8A 1UUVA 2IBZE 2HMKA 3CXHE 3L73E 3VCAA 4EMJB 1L0LE 1SQBE 3L72E 5AEWA 1BE3E 1RIEA 1G8KB 2QPZA 2XSOA 2FYNC 4QDDA 1ULIA 2NUMA 3GKQA 3GB4A 3L74E 1P84E 2D2CD 4PD4E 2QJKC 1NU1E 2BMRA 4HM8A 2XRXA 4NBBD 4NBCA 2JZAA 4QCKA 2XSHA 4NB9A 1O7PA 4QUQA 3H1IE 1WQLA 4QDFB 2BCCE 5KKZC 1NDOA 3H1KE 4PV1D 5AEUA 1SQXE 2HMOA 3L71E 1JM1A 4H13D 2NUKA 1NTZE 2DE5D 3H1LE 3GL0A 2BMOA 3VMHA 3GZYA 1Z01A 4NBHD 2YFIA 5KLIC 4AIVA 1PP9E 4NB8A 2E4QA 2NWFA 1O7WA 4HM5A 1SQQE 3D89A 4HM2A 3H1JE 3VCPA 1NTKE 1Z03A 2A06E 2ZYLA 2YFLA 4NBGD 1G8JB 1EZVE 3CWBE 1O7HA 1O7MA 4NBAD 3VMGD 2E74D 2I7FA 1EG9A 2HMMA 2QJYC 2CKFA 2DE7D 3FOUA 3TGUE 4NBED 1BCCE 1SJGA 4NBBA 4HM0A 4HJLA 2E75D 5CXMA 4QDCA 2YIUC 2YVJB 1SQVE 2ZT9D 2FYUE 4P1BH 2DE6D 4HM4A 1SQPE 3VMID 1Z02A 2QJPC 4NBFA 4NBDA 4U3FE 1WW9A 3GTSA 4AAYB 1L0NE 1ZRTE 2YFJA 4HM7A 3GZXA 1O7NA 3H1HE 3GL2A 4HKVA 4HM3A 4H0LD 3VMHD 2HMNA 3GOBA 1KB9E 1NYKA 4QURA 3BCCE 1VM9A 2B1XA 3EQQA 1KYOE 3L75E 1VF5D 3GKEA 4QDFA 3C0DA 2Q3WA 2NVFA 1ULJA 4NBCD 4NBGA 2JO6A 2B24A 1VCKA 1FQTA 2NVEA 4NBAA
chains in the Genus database with same CATH superfamily
2E76D 3DQYA 4P1CH 5HL4A 3EN1A 4NB9D 2GBXA 3CX5E 1O7GA 5KLVE 1UUWA 2GBWA 5BOKA 2DE7A 2NVGA 3AZCA 4NBEA 1RFSA 4H44D 4OGQD 3GTEA 3GCEA 2E4PA 2BMQA 2HMJA 1PPJE 2DE5A 1NTME 3N0QA 4HM6A 2DE6A 3GCFA 3VMIA 4NBFD 4NBDD 2HMLA 1Q90C 4HM1A 3L70E 4QUPA 3VMGA 4NB8D 4NBHA 2XR8A 1UUVA 2IBZE 2HMKA 3CXHE 3L73E 3VCAA 4EMJB 1L0LE 1SQBE 3L72E 5AEWA 1BE3E 1RIEA 1G8KB 2QPZA 2XSOA 2FYNC 4QDDA 1ULIA 2NUMA 3GKQA 3GB4A 3L74E 1P84E 2D2CD 4PD4E 2QJKC 1NU1E 2BMRA 4HM8A 2XRXA 4NBBD 4NBCA 2JZAA 4QCKA 2XSHA 4NB9A 1O7PA 4QUQA 3H1IE 1WQLA 4QDFB 2BCCE 5KKZC 1NDOA 3H1KE 4PV1D 5AEUA 1SQXE 2HMOA 3L71E 1JM1A 4H13D 2NUKA 1NTZE 2DE5D 3H1LE 3GL0A 2BMOA 3VMHA 3GZYA 1Z01A 4NBHD 2YFIA 5KLIC 4AIVA 1PP9E 4NB8A 2E4QA 2NWFA 1O7WA 4HM5A 1SQQE 3D89A 4HM2A 3H1JE 3VCPA 1NTKE 1Z03A 2A06E 2ZYLA 2YFLA 4NBGD 1G8JB 1EZVE 3CWBE 1O7HA 1O7MA 4NBAD 3VMGD 2E74D 2I7FA 1EG9A 2HMMA 2QJYC 2CKFA 2DE7D 3FOUA 3TGUE 4NBED 1BCCE 1SJGA 4NBBA 4HM0A 4HJLA 2E75D 5CXMA 4QDCA 2YIUC 2YVJB 1SQVE 2ZT9D 2FYUE 4P1BH 2DE6D 4HM4A 1SQPE 3VMID 1Z02A 2QJPC 4NBFA 4NBDA 4U3FE 1WW9A 3GTSA 4AAYB 1L0NE 1ZRTE 2YFJA 4HM7A 3GZXA 1O7NA 3H1HE 3GL2A 4HKVA 4HM3A 4H0LD 3VMHD 2HMNA 3GOBA 1KB9E 1NYKA 4QURA 3BCCE 1VM9A 2B1XA 3EQQA 1KYOE 3L75E 1VF5D 3GKEA 4QDFA 3C0DA 2Q3WA 2NVFA 1ULJA 4NBCD 4NBGA 2JO6A 2B24A 1VCKA 1FQTA 2NVEA 4NBAA
chains in the Genus database with same CATH topology
2E76D 3DQYA 4P1CH 5HL4A 3EN1A 4NB9D 2GBXA 3CX5E 1O7GA 5KLVE 1UUWA 2GBWA 5BOKA 2DE7A 2NVGA 3AZCA 4NBEA 1RFSA 4H44D 4OGQD 3GTEA 3GCEA 2E4PA 2BMQA 2HMJA 1PPJE 2DE5A 1NTME 3N0QA 4HM6A 2DE6A 3GCFA 3VMIA 4NBFD 4NBDD 2HMLA 1Q90C 4HM1A 3L70E 4QUPA 3VMGA 4NB8D 4NBHA 2XR8A 1UUVA 2IBZE 2HMKA 3CXHE 3L73E 3VCAA 4EMJB 1L0LE 1SQBE 3L72E 5AEWA 1BE3E 1RIEA 1G8KB 2QPZA 2XSOA 2FYNC 4QDDA 1ULIA 2NUMA 3GKQA 3GB4A 3L74E 1P84E 2D2CD 4PD4E 2QJKC 1NU1E 2BMRA 4HM8A 2XRXA 4NBBD 4NBCA 2JZAA 4QCKA 2XSHA 4NB9A 1O7PA 4QUQA 3H1IE 1WQLA 4QDFB 2BCCE 5KKZC 1NDOA 3H1KE 4PV1D 5AEUA 1SQXE 2HMOA 3L71E 1JM1A 4H13D 2NUKA 1NTZE 2DE5D 3H1LE 3GL0A 2BMOA 3VMHA 3GZYA 1Z01A 4NBHD 2YFIA 5KLIC 4AIVA 1PP9E 4NB8A 2E4QA 2NWFA 1O7WA 4HM5A 1SQQE 3D89A 4HM2A 3H1JE 3VCPA 1NTKE 1Z03A 2A06E 2ZYLA 2YFLA 4NBGD 1G8JB 1EZVE 3CWBE 1O7HA 1O7MA 4NBAD 3VMGD 2E74D 2I7FA 1EG9A 2HMMA 2QJYC 2CKFA 2DE7D 3FOUA 3TGUE 4NBED 1BCCE 1SJGA 4NBBA 4HM0A 4HJLA 2E75D 5CXMA 4QDCA 2YIUC 2YVJB 1SQVE 2ZT9D 2FYUE 4P1BH 2DE6D 4HM4A 1SQPE 3VMID 1Z02A 2QJPC 4NBFA 4NBDA 4U3FE 1WW9A 3GTSA 4AAYB 1L0NE 1ZRTE 2YFJA 4HM7A 3GZXA 1O7NA 3H1HE 3GL2A 4HKVA 4HM3A 4H0LD 3VMHD 2HMNA 3GOBA 1KB9E 1NYKA 4QURA 3BCCE 1VM9A 2B1XA 3EQQA 1KYOE 3L75E 1VF5D 3GKEA 4QDFA 3C0DA 2Q3WA 2NVFA 1ULJA 4NBCD 4NBGA 2JO6A 2B24A 1VCKA 1FQTA 2NVEA 4NBAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E76 D;  3DQY A;  4P1C H;  5HL4 A;  3EN1 A;  4NB9 D;  2GBX A;  3CX5 E;  1O7G A;  5KLV E;  1UUW A;  2GBW A;  5BOK A;  2DE7 A;  2NVG A;  3AZC A;  4NBE A;  1RFS A;  4H44 D;  4OGQ D;  3GTE A;  3GCE A;  2E4P A;  2BMQ A;  2HMJ A;  1PPJ E;  2DE5 A;  1NTM E;  3N0Q A;  4HM6 A;  2DE6 A;  3GCF A;  3VMI A;  4NBF D;  4NBD D;  2HML A;  1Q90 C;  4HM1 A;  3L70 E;  4QUP A;  3VMG A;  4NB8 D;  4NBH A;  2XR8 A;  1UUV A;  2IBZ E;  2HMK A;  3CXH E;  3L73 E;  3VCA A;  4EMJ B;  1L0L E;  1SQB E;  3L72 E;  5AEW A;  1BE3 E;  1RIE A;  1G8K B;  2QPZ A;  2XSO A;  2FYN C;  4QDD A;  1ULI A;  2NUM A;  3GKQ A;  3GB4 A;  3L74 E;  1P84 E;  2D2C D;  4PD4 E;  2QJK C;  1NU1 E;  2BMR A;  4HM8 A;  2XRX A;  4NBB D;  4NBC A;  2JZA A;  4QCK A;  2XSH A;  4NB9 A;  1O7P A;  4QUQ A;  3H1I E;  1WQL A;  4QDF B;  2BCC E;  5KKZ C;  1NDO A;  3H1K E;  4PV1 D;  5AEU A;  1SQX E;  2HMO A;  3L71 E;  1JM1 A;  4H13 D;  2NUK A;  1NTZ E;  2DE5 D;  3H1L E;  3GL0 A;  2BMO A;  3VMH A;  3GZY A;  1Z01 A;  4NBH D;  2YFI A;  5KLI C;  4AIV A;  1PP9 E;  4NB8 A;  2E4Q A;  2NWF A;  1O7W A;  4HM5 A;  1SQQ E;  3D89 A;  4HM2 A;  3H1J E;  3VCP A;  1NTK E;  1Z03 A;  2A06 E;  2ZYL A;  2YFL A;  4NBG D;  1G8J B;  1EZV E;  3CWB E;  1O7H A;  1O7M A;  4NBA D;  3VMG D;  2E74 D;  2I7F A;  1EG9 A;  2HMM A;  2QJY C;  2CKF A;  2DE7 D;  3FOU A;  3TGU E;  4NBE D;  1BCC E;  1SJG A;  4NBB A;  4HM0 A;  4HJL A;  2E75 D;  5CXM A;  4QDC A;  2YIU C;  2YVJ B;  1SQV E;  2ZT9 D;  2FYU E;  4P1B H;  2DE6 D;  4HM4 A;  1SQP E;  3VMI D;  1Z02 A;  2QJP C;  4NBF A;  4NBD A;  4U3F E;  1WW9 A;  3GTS A;  4AAY B;  1L0N E;  1ZRT E;  2YFJ A;  4HM7 A;  3GZX A;  1O7N A;  3H1H E;  3GL2 A;  4HKV A;  4HM3 A;  4H0L D;  3VMH D;  2HMN A;  3GOB A;  1KB9 E;  1NYK A;  4QUR A;  3BCC E;  1VM9 A;  2B1X A;  3EQQ A;  1KYO E;  3L75 E;  1VF5 D;  3GKE A;  4QDF A;  3C0D A;  2Q3W A;  2NVF A;  1ULJ A;  4NBC D;  4NBG A;  2JO6 A;  2B24 A;  1VCK A;  1FQT A;  2NVE A;  4NBA A; 
#chains in the Genus database with same CATH topology
 2E76 D;  3DQY A;  4P1C H;  5HL4 A;  3EN1 A;  4NB9 D;  2GBX A;  3CX5 E;  1O7G A;  5KLV E;  1UUW A;  2GBW A;  5BOK A;  2DE7 A;  2NVG A;  3AZC A;  4NBE A;  1RFS A;  4H44 D;  4OGQ D;  3GTE A;  3GCE A;  2E4P A;  2BMQ A;  2HMJ A;  1PPJ E;  2DE5 A;  1NTM E;  3N0Q A;  4HM6 A;  2DE6 A;  3GCF A;  3VMI A;  4NBF D;  4NBD D;  2HML A;  1Q90 C;  4HM1 A;  3L70 E;  4QUP A;  3VMG A;  4NB8 D;  4NBH A;  2XR8 A;  1UUV A;  2IBZ E;  2HMK A;  3CXH E;  3L73 E;  3VCA A;  4EMJ B;  1L0L E;  1SQB E;  3L72 E;  5AEW A;  1BE3 E;  1RIE A;  1G8K B;  2QPZ A;  2XSO A;  2FYN C;  4QDD A;  1ULI A;  2NUM A;  3GKQ A;  3GB4 A;  3L74 E;  1P84 E;  2D2C D;  4PD4 E;  2QJK C;  1NU1 E;  2BMR A;  4HM8 A;  2XRX A;  4NBB D;  4NBC A;  2JZA A;  4QCK A;  2XSH A;  4NB9 A;  1O7P A;  4QUQ A;  3H1I E;  1WQL A;  4QDF B;  2BCC E;  5KKZ C;  1NDO A;  3H1K E;  4PV1 D;  5AEU A;  1SQX E;  2HMO A;  3L71 E;  1JM1 A;  4H13 D;  2NUK A;  1NTZ E;  2DE5 D;  3H1L E;  3GL0 A;  2BMO A;  3VMH A;  3GZY A;  1Z01 A;  4NBH D;  2YFI A;  5KLI C;  4AIV A;  1PP9 E;  4NB8 A;  2E4Q A;  2NWF A;  1O7W A;  4HM5 A;  1SQQ E;  3D89 A;  4HM2 A;  3H1J E;  3VCP A;  1NTK E;  1Z03 A;  2A06 E;  2ZYL A;  2YFL A;  4NBG D;  1G8J B;  1EZV E;  3CWB E;  1O7H A;  1O7M A;  4NBA D;  3VMG D;  2E74 D;  2I7F A;  1EG9 A;  2HMM A;  2QJY C;  2CKF A;  2DE7 D;  3FOU A;  3TGU E;  4NBE D;  1BCC E;  1SJG A;  4NBB A;  4HM0 A;  4HJL A;  2E75 D;  5CXM A;  4QDC A;  2YIU C;  2YVJ B;  1SQV E;  2ZT9 D;  2FYU E;  4P1B H;  2DE6 D;  4HM4 A;  1SQP E;  3VMI D;  1Z02 A;  2QJP C;  4NBF A;  4NBD A;  4U3F E;  1WW9 A;  3GTS A;  4AAY B;  1L0N E;  1ZRT E;  2YFJ A;  4HM7 A;  3GZX A;  1O7N A;  3H1H E;  3GL2 A;  4HKV A;  4HM3 A;  4H0L D;  3VMH D;  2HMN A;  3GOB A;  1KB9 E;  1NYK A;  4QUR A;  3BCC E;  1VM9 A;  2B1X A;  3EQQ A;  1KYO E;  3L75 E;  1VF5 D;  3GKE A;  4QDF A;  3C0D A;  2Q3W A;  2NVF A;  1ULJ A;  4NBC D;  4NBG A;  2JO6 A;  2B24 A;  1VCK A;  1FQT A;  2NVE A;  4NBA A; 
#chains in the Genus database with same CATH homology
 2E76 D;  3DQY A;  4P1C H;  5HL4 A;  3EN1 A;  4NB9 D;  2GBX A;  3CX5 E;  1O7G A;  5KLV E;  1UUW A;  2GBW A;  5BOK A;  2DE7 A;  2NVG A;  3AZC A;  4NBE A;  1RFS A;  4H44 D;  4OGQ D;  3GTE A;  3GCE A;  2E4P A;  2BMQ A;  2HMJ A;  1PPJ E;  2DE5 A;  1NTM E;  3N0Q A;  4HM6 A;  2DE6 A;  3GCF A;  3VMI A;  4NBF D;  4NBD D;  2HML A;  1Q90 C;  4HM1 A;  3L70 E;  4QUP A;  3VMG A;  4NB8 D;  4NBH A;  2XR8 A;  1UUV A;  2IBZ E;  2HMK A;  3CXH E;  3L73 E;  3VCA A;  4EMJ B;  1L0L E;  1SQB E;  3L72 E;  5AEW A;  1BE3 E;  1RIE A;  1G8K B;  2QPZ A;  2XSO A;  2FYN C;  4QDD A;  1ULI A;  2NUM A;  3GKQ A;  3GB4 A;  3L74 E;  1P84 E;  2D2C D;  4PD4 E;  2QJK C;  1NU1 E;  2BMR A;  4HM8 A;  2XRX A;  4NBB D;  4NBC A;  2JZA A;  4QCK A;  2XSH A;  4NB9 A;  1O7P A;  4QUQ A;  3H1I E;  1WQL A;  4QDF B;  2BCC E;  5KKZ C;  1NDO A;  3H1K E;  4PV1 D;  5AEU A;  1SQX E;  2HMO A;  3L71 E;  1JM1 A;  4H13 D;  2NUK A;  1NTZ E;  2DE5 D;  3H1L E;  3GL0 A;  2BMO A;  3VMH A;  3GZY A;  1Z01 A;  4NBH D;  2YFI A;  5KLI C;  4AIV A;  1PP9 E;  4NB8 A;  2E4Q A;  2NWF A;  1O7W A;  4HM5 A;  1SQQ E;  3D89 A;  4HM2 A;  3H1J E;  3VCP A;  1NTK E;  1Z03 A;  2A06 E;  2ZYL A;  2YFL A;  4NBG D;  1G8J B;  1EZV E;  3CWB E;  1O7H A;  1O7M A;  4NBA D;  3VMG D;  2E74 D;  2I7F A;  1EG9 A;  2HMM A;  2QJY C;  2CKF A;  2DE7 D;  3FOU A;  3TGU E;  4NBE D;  1BCC E;  1SJG A;  4NBB A;  4HM0 A;  4HJL A;  2E75 D;  5CXM A;  4QDC A;  2YIU C;  2YVJ B;  1SQV E;  2ZT9 D;  2FYU E;  4P1B H;  2DE6 D;  4HM4 A;  1SQP E;  3VMI D;  1Z02 A;  2QJP C;  4NBF A;  4NBD A;  4U3F E;  1WW9 A;  3GTS A;  4AAY B;  1L0N E;  1ZRT E;  2YFJ A;  4HM7 A;  3GZX A;  1O7N A;  3H1H E;  3GL2 A;  4HKV A;  4HM3 A;  4H0L D;  3VMH D;  2HMN A;  3GOB A;  1KB9 E;  1NYK A;  4QUR A;  3BCC E;  1VM9 A;  2B1X A;  3EQQ A;  1KYO E;  3L75 E;  1VF5 D;  3GKE A;  4QDF A;  3C0D A;  2Q3W A;  2NVF A;  1ULJ A;  4NBC D;  4NBG A;  2JO6 A;  2B24 A;  1VCK A;  1FQT A;  2NVE A;  4NBA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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