2XSHA

Crystal structure of p4 variant of biphenyl dioxygenase from burkholderia xenovorans lb400 in complex with 2,6 di chlorobiphenyl
Total Genus 140
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
140
sequence length
442
structure length
433
Chain Sequence
NWTPEAIRGLVDQEKGLLDPRIYADQSLYELELERVFGRSWLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAFFDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLSQAQIPTKGNQFRAAWGGHGSGWYVDEPGSLLAVMGPKVTQYWTEGPAAELAEQRLGHTGMPVRRMVGQHMTIFPTCSFLPAMNNIRIWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPLNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMSEPSWATLKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords BIPHENYL DIOXYGENASE SUBUNIT ALPHA
publication title Structural Insight Into the Expanded Pcb-Degrading Abilities of a Biphenyl Dioxygenase Obtained by Directed Evolution.
pubmed doi rcsb
source organism Burkholderia xenovorans
molecule tags Oxidoreductase
total genus 140
structure length 433
sequence length 442
chains with identical sequence C, E, G, I, K
ec nomenclature ec 1.14.12.18: Biphenyl 2,3-dioxygenase.
pdb deposition date 2010-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2xshA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2xshA01
1NTME 2E74D 4NBHD 2JZAA 3GKEA 2FYNC 2HMMA 1SQPE 1NDOA 3H1JE 1VM9A 2CKFA 3N0QA 3VMHD 1WW9A 2I7FA 3CWBE 5KLIC 2B24A 2QPZA 2DE6A 2E75D 3L74E 4PV1D 2XRXA 1Z02A 1KB9E 1NTZE 1Z01A 2BMRA 3FOUA 3VMID 4QUQA 1UUWA 1VF5D 2NUMA 2NVGA 3EQQA 3GOBA 1KYOE 4H0LD 2E76D 4NBBA 2A06E 4NBFA 3VCAA 4HM3A 3GL0A 4NB9D 5CXMA 2IBZE 2BCCE 2NVEA 3GCEA 1L0NE 1G8JB 3VCPA 3L72E 4P1CH 4HM4A 4QDFA 4NB8A 4PD4E 3L70E 4OGQD 2QJKC 4AIVA 3AZCA 4P1BH 2DE6D 3H1HE 3GCFA 1O7PA 3DQYA 3C0DA 4H13D 4QURA 3GTSA 1EZVE 2B1XA 2YFIA 1O7WA 4NBCA 4HM8A 1VCKA 1JM1A 2E4QA 5AEWA 4NBBD 4NBAA 4NBFD 2XR8A 1P84E 3H1IE 2BMQA 3EN1A 3GZYA 2HMJA 5BOKA 3GTEA 3GZXA 1NU1E 3D89A 3VMGA 2QJYC 4QCKA 4NBEA 3L71E 2DE5A 4NB8D 4NBGA 4HM0A 1EG9A 2HMKA 2Q3WA 4QDFB 2E4PA 2DE7A 4H44D 4HKVA 4HM6A 4HM1A 2YIUC 4NBDA 1O7GA 3H1KE 4HJLA 5KLVE 2HMNA 4HM5A 3TGUE 2GBWA 1BE3E 2QJPC 5AEUA 1Z03A 1NTKE 4NBHA 1ZRTE 1WQLA 3L75E 2HMOA 3L73E 4AAYB 2NVFA 1L0LE 1SQVE 2BMOA 4NBCD 1ULJA 4NBAD 2GBXA 2JO6A 3VMHA 4QDDA 1SJGA 1BCCE 1RIEA 2XSHA 3GL2A 1PPJE 2FYUE 2HMLA 2D2CD 3VMGD 3CXHE 3GKQA 3VMIA 2XSOA 5KKZC 4U3FE 1SQXE 1SQQE 1O7NA 1SQBE 2NWFA 1UUVA 2YFLA 4NBED 1FQTA 2DE5D 3H1LE 1G8KB 4NBGD 2ZYLA 1PP9E 1O7HA 1RFSA 2DE7D 3BCCE 1O7MA 4NBDD 1Q90C 2ZT9D 4NB9A 1ULIA 2YVJB 4EMJB 5HL4A 4HM2A 4HM7A 1NYKA 3CX5E 2NUKA 3GB4A 4QDCA 2YFJA 4QUPA
chains in the Genus database with same CATH superfamily
1NTME 2E74D 4NBHD 2JZAA 3GKEA 2FYNC 2HMMA 1SQPE 1NDOA 3H1JE 1VM9A 2CKFA 3N0QA 3VMHD 1WW9A 2I7FA 3CWBE 5KLIC 2B24A 2QPZA 2DE6A 2E75D 3L74E 4PV1D 2XRXA 1Z02A 1KB9E 1NTZE 1Z01A 2BMRA 3FOUA 3VMID 4QUQA 1UUWA 1VF5D 2NUMA 2NVGA 3EQQA 3GOBA 1KYOE 4H0LD 2E76D 4NBBA 2A06E 4NBFA 3VCAA 4HM3A 3GL0A 4NB9D 5CXMA 2IBZE 2BCCE 2NVEA 3GCEA 1L0NE 1G8JB 3VCPA 3L72E 4P1CH 4HM4A 4QDFA 4NB8A 4PD4E 3L70E 4OGQD 2QJKC 4AIVA 3AZCA 4P1BH 2DE6D 3H1HE 3GCFA 1O7PA 3DQYA 3C0DA 4H13D 4QURA 3GTSA 1EZVE 2B1XA 2YFIA 1O7WA 4NBCA 4HM8A 1VCKA 1JM1A 2E4QA 5AEWA 4NBBD 4NBAA 4NBFD 2XR8A 1P84E 3H1IE 2BMQA 3EN1A 3GZYA 2HMJA 5BOKA 3GTEA 3GZXA 1NU1E 3D89A 3VMGA 2QJYC 4QCKA 4NBEA 3L71E 2DE5A 4NB8D 4NBGA 4HM0A 1EG9A 2HMKA 2Q3WA 4QDFB 2E4PA 2DE7A 4H44D 4HKVA 4HM6A 4HM1A 2YIUC 4NBDA 1O7GA 3H1KE 4HJLA 5KLVE 2HMNA 4HM5A 3TGUE 2GBWA 1BE3E 2QJPC 5AEUA 1Z03A 1NTKE 4NBHA 1ZRTE 1WQLA 3L75E 2HMOA 3L73E 4AAYB 2NVFA 1L0LE 1SQVE 2BMOA 4NBCD 1ULJA 4NBAD 2GBXA 2JO6A 3VMHA 4QDDA 1SJGA 1BCCE 1RIEA 2XSHA 3GL2A 1PPJE 2FYUE 2HMLA 2D2CD 3VMGD 3CXHE 3GKQA 3VMIA 2XSOA 5KKZC 4U3FE 1SQXE 1SQQE 1O7NA 1SQBE 2NWFA 1UUVA 2YFLA 4NBED 1FQTA 2DE5D 3H1LE 1G8KB 4NBGD 2ZYLA 1PP9E 1O7HA 1RFSA 2DE7D 3BCCE 1O7MA 4NBDD 1Q90C 2ZT9D 4NB9A 1ULIA 2YVJB 4EMJB 5HL4A 4HM2A 4HM7A 1NYKA 3CX5E 2NUKA 3GB4A 4QDCA 2YFJA 4QUPA
chains in the Genus database with same CATH topology
1NTME 2E74D 4NBHD 2JZAA 3GKEA 2FYNC 2HMMA 1SQPE 1NDOA 3H1JE 1VM9A 2CKFA 3N0QA 3VMHD 1WW9A 2I7FA 3CWBE 5KLIC 2B24A 2QPZA 2DE6A 2E75D 3L74E 4PV1D 2XRXA 1Z02A 1KB9E 1NTZE 1Z01A 2BMRA 3FOUA 3VMID 4QUQA 1UUWA 1VF5D 2NUMA 2NVGA 3EQQA 3GOBA 1KYOE 4H0LD 2E76D 4NBBA 2A06E 4NBFA 3VCAA 4HM3A 3GL0A 4NB9D 5CXMA 2IBZE 2BCCE 2NVEA 3GCEA 1L0NE 1G8JB 3VCPA 3L72E 4P1CH 4HM4A 4QDFA 4NB8A 4PD4E 3L70E 4OGQD 2QJKC 4AIVA 3AZCA 4P1BH 2DE6D 3H1HE 3GCFA 1O7PA 3DQYA 3C0DA 4H13D 4QURA 3GTSA 1EZVE 2B1XA 2YFIA 1O7WA 4NBCA 4HM8A 1VCKA 1JM1A 2E4QA 5AEWA 4NBBD 4NBAA 4NBFD 2XR8A 1P84E 3H1IE 2BMQA 3EN1A 3GZYA 2HMJA 5BOKA 3GTEA 3GZXA 1NU1E 3D89A 3VMGA 2QJYC 4QCKA 4NBEA 3L71E 2DE5A 4NB8D 4NBGA 4HM0A 1EG9A 2HMKA 2Q3WA 4QDFB 2E4PA 2DE7A 4H44D 4HKVA 4HM6A 4HM1A 2YIUC 4NBDA 1O7GA 3H1KE 4HJLA 5KLVE 2HMNA 4HM5A 3TGUE 2GBWA 1BE3E 2QJPC 5AEUA 1Z03A 1NTKE 4NBHA 1ZRTE 1WQLA 3L75E 2HMOA 3L73E 4AAYB 2NVFA 1L0LE 1SQVE 2BMOA 4NBCD 1ULJA 4NBAD 2GBXA 2JO6A 3VMHA 4QDDA 1SJGA 1BCCE 1RIEA 2XSHA 3GL2A 1PPJE 2FYUE 2HMLA 2D2CD 3VMGD 3CXHE 3GKQA 3VMIA 2XSOA 5KKZC 4U3FE 1SQXE 1SQQE 1O7NA 1SQBE 2NWFA 1UUVA 2YFLA 4NBED 1FQTA 2DE5D 3H1LE 1G8KB 4NBGD 2ZYLA 1PP9E 1O7HA 1RFSA 2DE7D 3BCCE 1O7MA 4NBDD 1Q90C 2ZT9D 4NB9A 1ULIA 2YVJB 4EMJB 5HL4A 4HM2A 4HM7A 1NYKA 3CX5E 2NUKA 3GB4A 4QDCA 2YFJA 4QUPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NTM E;  2E74 D;  4NBH D;  2JZA A;  3GKE A;  2FYN C;  2HMM A;  1SQP E;  1NDO A;  3H1J E;  1VM9 A;  2CKF A;  3N0Q A;  3VMH D;  1WW9 A;  2I7F A;  3CWB E;  5KLI C;  2B24 A;  2QPZ A;  2DE6 A;  2E75 D;  3L74 E;  4PV1 D;  2XRX A;  1Z02 A;  1KB9 E;  1NTZ E;  1Z01 A;  2BMR A;  3FOU A;  3VMI D;  4QUQ A;  1UUW A;  1VF5 D;  2NUM A;  2NVG A;  3EQQ A;  3GOB A;  1KYO E;  4H0L D;  2E76 D;  4NBB A;  2A06 E;  4NBF A;  3VCA A;  4HM3 A;  3GL0 A;  4NB9 D;  5CXM A;  2IBZ E;  2BCC E;  2NVE A;  3GCE A;  1L0N E;  1G8J B;  3VCP A;  3L72 E;  4P1C H;  4HM4 A;  4QDF A;  4NB8 A;  4PD4 E;  3L70 E;  4OGQ D;  2QJK C;  4AIV A;  3AZC A;  4P1B H;  2DE6 D;  3H1H E;  3GCF A;  1O7P A;  3DQY A;  3C0D A;  4H13 D;  4QUR A;  3GTS A;  1EZV E;  2B1X A;  2YFI A;  1O7W A;  4NBC A;  4HM8 A;  1VCK A;  1JM1 A;  2E4Q A;  5AEW A;  4NBB D;  4NBA A;  4NBF D;  2XR8 A;  1P84 E;  3H1I E;  2BMQ A;  3EN1 A;  3GZY A;  2HMJ A;  5BOK A;  3GTE A;  3GZX A;  1NU1 E;  3D89 A;  3VMG A;  2QJY C;  4QCK A;  4NBE A;  3L71 E;  2DE5 A;  4NB8 D;  4NBG A;  4HM0 A;  1EG9 A;  2HMK A;  2Q3W A;  4QDF B;  2E4P A;  2DE7 A;  4H44 D;  4HKV A;  4HM6 A;  4HM1 A;  2YIU C;  4NBD A;  1O7G A;  3H1K E;  4HJL A;  5KLV E;  2HMN A;  4HM5 A;  3TGU E;  2GBW A;  1BE3 E;  2QJP C;  5AEU A;  1Z03 A;  1NTK E;  4NBH A;  1ZRT E;  1WQL A;  3L75 E;  2HMO A;  3L73 E;  4AAY B;  2NVF A;  1L0L E;  1SQV E;  2BMO A;  4NBC D;  1ULJ A;  4NBA D;  2GBX A;  2JO6 A;  3VMH A;  4QDD A;  1SJG A;  1BCC E;  1RIE A;  2XSH A;  3GL2 A;  1PPJ E;  2FYU E;  2HML A;  2D2C D;  3VMG D;  3CXH E;  3GKQ A;  3VMI A;  2XSO A;  5KKZ C;  4U3F E;  1SQX E;  1SQQ E;  1O7N A;  1SQB E;  2NWF A;  1UUV A;  2YFL A;  4NBE D;  1FQT A;  2DE5 D;  3H1L E;  1G8K B;  4NBG D;  2ZYL A;  1PP9 E;  1O7H A;  1RFS A;  2DE7 D;  3BCC E;  1O7M A;  4NBD D;  1Q90 C;  2ZT9 D;  4NB9 A;  1ULI A;  2YVJ B;  4EMJ B;  5HL4 A;  4HM2 A;  4HM7 A;  1NYK A;  3CX5 E;  2NUK A;  3GB4 A;  4QDC A;  2YFJ A;  4QUP A; 
#chains in the Genus database with same CATH topology
 1NTM E;  2E74 D;  4NBH D;  2JZA A;  3GKE A;  2FYN C;  2HMM A;  1SQP E;  1NDO A;  3H1J E;  1VM9 A;  2CKF A;  3N0Q A;  3VMH D;  1WW9 A;  2I7F A;  3CWB E;  5KLI C;  2B24 A;  2QPZ A;  2DE6 A;  2E75 D;  3L74 E;  4PV1 D;  2XRX A;  1Z02 A;  1KB9 E;  1NTZ E;  1Z01 A;  2BMR A;  3FOU A;  3VMI D;  4QUQ A;  1UUW A;  1VF5 D;  2NUM A;  2NVG A;  3EQQ A;  3GOB A;  1KYO E;  4H0L D;  2E76 D;  4NBB A;  2A06 E;  4NBF A;  3VCA A;  4HM3 A;  3GL0 A;  4NB9 D;  5CXM A;  2IBZ E;  2BCC E;  2NVE A;  3GCE A;  1L0N E;  1G8J B;  3VCP A;  3L72 E;  4P1C H;  4HM4 A;  4QDF A;  4NB8 A;  4PD4 E;  3L70 E;  4OGQ D;  2QJK C;  4AIV A;  3AZC A;  4P1B H;  2DE6 D;  3H1H E;  3GCF A;  1O7P A;  3DQY A;  3C0D A;  4H13 D;  4QUR A;  3GTS A;  1EZV E;  2B1X A;  2YFI A;  1O7W A;  4NBC A;  4HM8 A;  1VCK A;  1JM1 A;  2E4Q A;  5AEW A;  4NBB D;  4NBA A;  4NBF D;  2XR8 A;  1P84 E;  3H1I E;  2BMQ A;  3EN1 A;  3GZY A;  2HMJ A;  5BOK A;  3GTE A;  3GZX A;  1NU1 E;  3D89 A;  3VMG A;  2QJY C;  4QCK A;  4NBE A;  3L71 E;  2DE5 A;  4NB8 D;  4NBG A;  4HM0 A;  1EG9 A;  2HMK A;  2Q3W A;  4QDF B;  2E4P A;  2DE7 A;  4H44 D;  4HKV A;  4HM6 A;  4HM1 A;  2YIU C;  4NBD A;  1O7G A;  3H1K E;  4HJL A;  5KLV E;  2HMN A;  4HM5 A;  3TGU E;  2GBW A;  1BE3 E;  2QJP C;  5AEU A;  1Z03 A;  1NTK E;  4NBH A;  1ZRT E;  1WQL A;  3L75 E;  2HMO A;  3L73 E;  4AAY B;  2NVF A;  1L0L E;  1SQV E;  2BMO A;  4NBC D;  1ULJ A;  4NBA D;  2GBX A;  2JO6 A;  3VMH A;  4QDD A;  1SJG A;  1BCC E;  1RIE A;  2XSH A;  3GL2 A;  1PPJ E;  2FYU E;  2HML A;  2D2C D;  3VMG D;  3CXH E;  3GKQ A;  3VMI A;  2XSO A;  5KKZ C;  4U3F E;  1SQX E;  1SQQ E;  1O7N A;  1SQB E;  2NWF A;  1UUV A;  2YFL A;  4NBE D;  1FQT A;  2DE5 D;  3H1L E;  1G8K B;  4NBG D;  2ZYL A;  1PP9 E;  1O7H A;  1RFS A;  2DE7 D;  3BCC E;  1O7M A;  4NBD D;  1Q90 C;  2ZT9 D;  4NB9 A;  1ULI A;  2YVJ B;  4EMJ B;  5HL4 A;  4HM2 A;  4HM7 A;  1NYK A;  3CX5 E;  2NUK A;  3GB4 A;  4QDC A;  2YFJ A;  4QUP A; 
#chains in the Genus database with same CATH homology
 1NTM E;  2E74 D;  4NBH D;  2JZA A;  3GKE A;  2FYN C;  2HMM A;  1SQP E;  1NDO A;  3H1J E;  1VM9 A;  2CKF A;  3N0Q A;  3VMH D;  1WW9 A;  2I7F A;  3CWB E;  5KLI C;  2B24 A;  2QPZ A;  2DE6 A;  2E75 D;  3L74 E;  4PV1 D;  2XRX A;  1Z02 A;  1KB9 E;  1NTZ E;  1Z01 A;  2BMR A;  3FOU A;  3VMI D;  4QUQ A;  1UUW A;  1VF5 D;  2NUM A;  2NVG A;  3EQQ A;  3GOB A;  1KYO E;  4H0L D;  2E76 D;  4NBB A;  2A06 E;  4NBF A;  3VCA A;  4HM3 A;  3GL0 A;  4NB9 D;  5CXM A;  2IBZ E;  2BCC E;  2NVE A;  3GCE A;  1L0N E;  1G8J B;  3VCP A;  3L72 E;  4P1C H;  4HM4 A;  4QDF A;  4NB8 A;  4PD4 E;  3L70 E;  4OGQ D;  2QJK C;  4AIV A;  3AZC A;  4P1B H;  2DE6 D;  3H1H E;  3GCF A;  1O7P A;  3DQY A;  3C0D A;  4H13 D;  4QUR A;  3GTS A;  1EZV E;  2B1X A;  2YFI A;  1O7W A;  4NBC A;  4HM8 A;  1VCK A;  1JM1 A;  2E4Q A;  5AEW A;  4NBB D;  4NBA A;  4NBF D;  2XR8 A;  1P84 E;  3H1I E;  2BMQ A;  3EN1 A;  3GZY A;  2HMJ A;  5BOK A;  3GTE A;  3GZX A;  1NU1 E;  3D89 A;  3VMG A;  2QJY C;  4QCK A;  4NBE A;  3L71 E;  2DE5 A;  4NB8 D;  4NBG A;  4HM0 A;  1EG9 A;  2HMK A;  2Q3W A;  4QDF B;  2E4P A;  2DE7 A;  4H44 D;  4HKV A;  4HM6 A;  4HM1 A;  2YIU C;  4NBD A;  1O7G A;  3H1K E;  4HJL A;  5KLV E;  2HMN A;  4HM5 A;  3TGU E;  2GBW A;  1BE3 E;  2QJP C;  5AEU A;  1Z03 A;  1NTK E;  4NBH A;  1ZRT E;  1WQL A;  3L75 E;  2HMO A;  3L73 E;  4AAY B;  2NVF A;  1L0L E;  1SQV E;  2BMO A;  4NBC D;  1ULJ A;  4NBA D;  2GBX A;  2JO6 A;  3VMH A;  4QDD A;  1SJG A;  1BCC E;  1RIE A;  2XSH A;  3GL2 A;  1PPJ E;  2FYU E;  2HML A;  2D2C D;  3VMG D;  3CXH E;  3GKQ A;  3VMI A;  2XSO A;  5KKZ C;  4U3F E;  1SQX E;  1SQQ E;  1O7N A;  1SQB E;  2NWF A;  1UUV A;  2YFL A;  4NBE D;  1FQT A;  2DE5 D;  3H1L E;  1G8K B;  4NBG D;  2ZYL A;  1PP9 E;  1O7H A;  1RFS A;  2DE7 D;  3BCC E;  1O7M A;  4NBD D;  1Q90 C;  2ZT9 D;  4NB9 A;  1ULI A;  2YVJ B;  4EMJ B;  5HL4 A;  4HM2 A;  4HM7 A;  1NYK A;  3CX5 E;  2NUK A;  3GB4 A;  4QDC A;  2YFJ A;  4QUP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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