1O7GA

Naphthalene 1,2-dioxygenase with naphthalene bound in the active site.
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
publication title Crystal Structure of Naphthalene Dioxygenase: Side-on Binding of Dioxygen to Iron
pubmed doi rcsb
source organism Pseudomonas putida
total genus 163
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2002-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1o7gA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1o7gA01
5KLVE 1L0NE 2B1XA 2XR8A 3DQYA 2NUMA 4PV1D 2HMOA 2DE5D 3GL2A 4QCKA 1NU1E 1Z02A 5KKZC 3GKQA 4QDDA 3CXHE 1L0LE 2XSHA 3L75E 3VMGA 3CWBE 2HMKA 4NB8D 1O7WA 3L70E 4QDFA 3H1HE 2E74D 1WW9A 1KYOE 2YVJB 1VCKA 5CXMA 1NTZE 2NVGA 4HM3A 1G8KB 1O7PA 1NTKE 1UUVA 5KLIC 3L71E 4EMJB 5HL4A 1VM9A 4NB9D 1NTME 1ULJA 2ZYLA 4NB8A 3VCPA 2E75D 1NYKA 1SQBE 2DE6D 3GCEA 3L74E 3H1KE 3VMGD 2XSOA 4HM2A 2DE7D 1ULIA 1P84E 4NB9A 4NBAD 4U3FE 2DE6A 3N0QA 1O7HA 4QURA 2QJKC 3GKEA 4NBHD 2NWFA 2DE7A 2FYNC 3GL0A 3L72E 4QDCA 4HM6A 4NBAA 2GBWA 2YFLA 2HMMA 2HMJA 2YIUC 3GZYA 4NBHA 2IBZE 2NVEA 1O7GA 2XRXA 1O7MA 3L73E 4NBGA 1BE3E 1EZVE 1WQLA 2NVFA 2YFIA 4QDFB 2QJPC 3VMHA 5BOKA 3D89A 3GB4A 1SQXE 1JM1A 4H13D 1G8JB 4HM4A 2QPZA 2BCCE 2D2CD 4HM0A 2A06E 3H1JE 4PD4E 3GTSA 4OGQD 3VCAA 1Q90C 3EQQA 2B24A 2QJYC 4P1CH 2BMOA 4H44D 1EG9A 1RFSA 1FQTA 4NBFD 2E76D 4NBGD 1BCCE 3VMHD 4HM7A 5AEUA 3C0DA 1SQPE 2Q3WA 2E4QA 4QUQA 4NBCD 3H1LE 4NBDD 4NBFA 2CKFA 4HM1A 4NBBD 2YFJA 4HKVA 2HMLA 2NUKA 1SQQE 4NBCA 1NDOA 3VMIA 3GTEA 1Z03A 4NBDA 1O7NA 1UUWA 2JO6A 4NBBA 1ZRTE 2BMQA 2I7FA 3AZCA 3GZXA 4AIVA 5AEWA 1RIEA 4HM5A 3GCFA 3EN1A 2ZT9D 1Z01A 2DE5A 4QUPA 2GBXA 3TGUE 4NBED 4P1BH 1SQVE 1KB9E 2E4PA 3H1IE 3GOBA 3BCCE 4HJLA 1PPJE 3CX5E 1SJGA 1VF5D 2JZAA 4H0LD 3FOUA 3VMID 4NBEA 2HMNA 1PP9E 4HM8A 2FYUE 2BMRA 4AAYB
chains in the Genus database with same CATH superfamily
5KLVE 1L0NE 2B1XA 2XR8A 3DQYA 2NUMA 4PV1D 2HMOA 2DE5D 3GL2A 4QCKA 1NU1E 1Z02A 5KKZC 3GKQA 4QDDA 3CXHE 1L0LE 2XSHA 3L75E 3VMGA 3CWBE 2HMKA 4NB8D 1O7WA 3L70E 4QDFA 3H1HE 2E74D 1WW9A 1KYOE 2YVJB 1VCKA 5CXMA 1NTZE 2NVGA 4HM3A 1G8KB 1O7PA 1NTKE 1UUVA 5KLIC 3L71E 4EMJB 5HL4A 1VM9A 4NB9D 1NTME 1ULJA 2ZYLA 4NB8A 3VCPA 2E75D 1NYKA 1SQBE 2DE6D 3GCEA 3L74E 3H1KE 3VMGD 2XSOA 4HM2A 2DE7D 1ULIA 1P84E 4NB9A 4NBAD 4U3FE 2DE6A 3N0QA 1O7HA 4QURA 2QJKC 3GKEA 4NBHD 2NWFA 2DE7A 2FYNC 3GL0A 3L72E 4QDCA 4HM6A 4NBAA 2GBWA 2YFLA 2HMMA 2HMJA 2YIUC 3GZYA 4NBHA 2IBZE 2NVEA 1O7GA 2XRXA 1O7MA 3L73E 4NBGA 1BE3E 1EZVE 1WQLA 2NVFA 2YFIA 4QDFB 2QJPC 3VMHA 5BOKA 3D89A 3GB4A 1SQXE 1JM1A 4H13D 1G8JB 4HM4A 2QPZA 2BCCE 2D2CD 4HM0A 2A06E 3H1JE 4PD4E 3GTSA 4OGQD 3VCAA 1Q90C 3EQQA 2B24A 2QJYC 4P1CH 2BMOA 4H44D 1EG9A 1RFSA 1FQTA 4NBFD 2E76D 4NBGD 1BCCE 3VMHD 4HM7A 5AEUA 3C0DA 1SQPE 2Q3WA 2E4QA 4QUQA 4NBCD 3H1LE 4NBDD 4NBFA 2CKFA 4HM1A 4NBBD 2YFJA 4HKVA 2HMLA 2NUKA 1SQQE 4NBCA 1NDOA 3VMIA 3GTEA 1Z03A 4NBDA 1O7NA 1UUWA 2JO6A 4NBBA 1ZRTE 2BMQA 2I7FA 3AZCA 3GZXA 4AIVA 5AEWA 1RIEA 4HM5A 3GCFA 3EN1A 2ZT9D 1Z01A 2DE5A 4QUPA 2GBXA 3TGUE 4NBED 4P1BH 1SQVE 1KB9E 2E4PA 3H1IE 3GOBA 3BCCE 4HJLA 1PPJE 3CX5E 1SJGA 1VF5D 2JZAA 4H0LD 3FOUA 3VMID 4NBEA 2HMNA 1PP9E 4HM8A 2FYUE 2BMRA 4AAYB
chains in the Genus database with same CATH topology
5KLVE 1L0NE 2B1XA 2XR8A 3DQYA 2NUMA 4PV1D 2HMOA 2DE5D 3GL2A 4QCKA 1NU1E 1Z02A 5KKZC 3GKQA 4QDDA 3CXHE 1L0LE 2XSHA 3L75E 3VMGA 3CWBE 2HMKA 4NB8D 1O7WA 3L70E 4QDFA 3H1HE 2E74D 1WW9A 1KYOE 2YVJB 1VCKA 5CXMA 1NTZE 2NVGA 4HM3A 1G8KB 1O7PA 1NTKE 1UUVA 5KLIC 3L71E 4EMJB 5HL4A 1VM9A 4NB9D 1NTME 1ULJA 2ZYLA 4NB8A 3VCPA 2E75D 1NYKA 1SQBE 2DE6D 3GCEA 3L74E 3H1KE 3VMGD 2XSOA 4HM2A 2DE7D 1ULIA 1P84E 4NB9A 4NBAD 4U3FE 2DE6A 3N0QA 1O7HA 4QURA 2QJKC 3GKEA 4NBHD 2NWFA 2DE7A 2FYNC 3GL0A 3L72E 4QDCA 4HM6A 4NBAA 2GBWA 2YFLA 2HMMA 2HMJA 2YIUC 3GZYA 4NBHA 2IBZE 2NVEA 1O7GA 2XRXA 1O7MA 3L73E 4NBGA 1BE3E 1EZVE 1WQLA 2NVFA 2YFIA 4QDFB 2QJPC 3VMHA 5BOKA 3D89A 3GB4A 1SQXE 1JM1A 4H13D 1G8JB 4HM4A 2QPZA 2BCCE 2D2CD 4HM0A 2A06E 3H1JE 4PD4E 3GTSA 4OGQD 3VCAA 1Q90C 3EQQA 2B24A 2QJYC 4P1CH 2BMOA 4H44D 1EG9A 1RFSA 1FQTA 4NBFD 2E76D 4NBGD 1BCCE 3VMHD 4HM7A 5AEUA 3C0DA 1SQPE 2Q3WA 2E4QA 4QUQA 4NBCD 3H1LE 4NBDD 4NBFA 2CKFA 4HM1A 4NBBD 2YFJA 4HKVA 2HMLA 2NUKA 1SQQE 4NBCA 1NDOA 3VMIA 3GTEA 1Z03A 4NBDA 1O7NA 1UUWA 2JO6A 4NBBA 1ZRTE 2BMQA 2I7FA 3AZCA 3GZXA 4AIVA 5AEWA 1RIEA 4HM5A 3GCFA 3EN1A 2ZT9D 1Z01A 2DE5A 4QUPA 2GBXA 3TGUE 4NBED 4P1BH 1SQVE 1KB9E 2E4PA 3H1IE 3GOBA 3BCCE 4HJLA 1PPJE 3CX5E 1SJGA 1VF5D 2JZAA 4H0LD 3FOUA 3VMID 4NBEA 2HMNA 1PP9E 4HM8A 2FYUE 2BMRA 4AAYB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5KLV E;  1L0N E;  2B1X A;  2XR8 A;  3DQY A;  2NUM A;  4PV1 D;  2HMO A;  2DE5 D;  3GL2 A;  4QCK A;  1NU1 E;  1Z02 A;  5KKZ C;  3GKQ A;  4QDD A;  3CXH E;  1L0L E;  2XSH A;  3L75 E;  3VMG A;  3CWB E;  2HMK A;  4NB8 D;  1O7W A;  3L70 E;  4QDF A;  3H1H E;  2E74 D;  1WW9 A;  1KYO E;  2YVJ B;  1VCK A;  5CXM A;  1NTZ E;  2NVG A;  4HM3 A;  1G8K B;  1O7P A;  1NTK E;  1UUV A;  5KLI C;  3L71 E;  4EMJ B;  5HL4 A;  1VM9 A;  4NB9 D;  1NTM E;  1ULJ A;  2ZYL A;  4NB8 A;  3VCP A;  2E75 D;  1NYK A;  1SQB E;  2DE6 D;  3GCE A;  3L74 E;  3H1K E;  3VMG D;  2XSO A;  4HM2 A;  2DE7 D;  1ULI A;  1P84 E;  4NB9 A;  4NBA D;  4U3F E;  2DE6 A;  3N0Q A;  1O7H A;  4QUR A;  2QJK C;  3GKE A;  4NBH D;  2NWF A;  2DE7 A;  2FYN C;  3GL0 A;  3L72 E;  4QDC A;  4HM6 A;  4NBA A;  2GBW A;  2YFL A;  2HMM A;  2HMJ A;  2YIU C;  3GZY A;  4NBH A;  2IBZ E;  2NVE A;  1O7G A;  2XRX A;  1O7M A;  3L73 E;  4NBG A;  1BE3 E;  1EZV E;  1WQL A;  2NVF A;  2YFI A;  4QDF B;  2QJP C;  3VMH A;  5BOK A;  3D89 A;  3GB4 A;  1SQX E;  1JM1 A;  4H13 D;  1G8J B;  4HM4 A;  2QPZ A;  2BCC E;  2D2C D;  4HM0 A;  2A06 E;  3H1J E;  4PD4 E;  3GTS A;  4OGQ D;  3VCA A;  1Q90 C;  3EQQ A;  2B24 A;  2QJY C;  4P1C H;  2BMO A;  4H44 D;  1EG9 A;  1RFS A;  1FQT A;  4NBF D;  2E76 D;  4NBG D;  1BCC E;  3VMH D;  4HM7 A;  5AEU A;  3C0D A;  1SQP E;  2Q3W A;  2E4Q A;  4QUQ A;  4NBC D;  3H1L E;  4NBD D;  4NBF A;  2CKF A;  4HM1 A;  4NBB D;  2YFJ A;  4HKV A;  2HML A;  2NUK A;  1SQQ E;  4NBC A;  1NDO A;  3VMI A;  3GTE A;  1Z03 A;  4NBD A;  1O7N A;  1UUW A;  2JO6 A;  4NBB A;  1ZRT E;  2BMQ A;  2I7F A;  3AZC A;  3GZX A;  4AIV A;  5AEW A;  1RIE A;  4HM5 A;  3GCF A;  3EN1 A;  2ZT9 D;  1Z01 A;  2DE5 A;  4QUP A;  2GBX A;  3TGU E;  4NBE D;  4P1B H;  1SQV E;  1KB9 E;  2E4P A;  3H1I E;  3GOB A;  3BCC E;  4HJL A;  1PPJ E;  3CX5 E;  1SJG A;  1VF5 D;  2JZA A;  4H0L D;  3FOU A;  3VMI D;  4NBE A;  2HMN A;  1PP9 E;  4HM8 A;  2FYU E;  2BMR A;  4AAY B; 
#chains in the Genus database with same CATH topology
 5KLV E;  1L0N E;  2B1X A;  2XR8 A;  3DQY A;  2NUM A;  4PV1 D;  2HMO A;  2DE5 D;  3GL2 A;  4QCK A;  1NU1 E;  1Z02 A;  5KKZ C;  3GKQ A;  4QDD A;  3CXH E;  1L0L E;  2XSH A;  3L75 E;  3VMG A;  3CWB E;  2HMK A;  4NB8 D;  1O7W A;  3L70 E;  4QDF A;  3H1H E;  2E74 D;  1WW9 A;  1KYO E;  2YVJ B;  1VCK A;  5CXM A;  1NTZ E;  2NVG A;  4HM3 A;  1G8K B;  1O7P A;  1NTK E;  1UUV A;  5KLI C;  3L71 E;  4EMJ B;  5HL4 A;  1VM9 A;  4NB9 D;  1NTM E;  1ULJ A;  2ZYL A;  4NB8 A;  3VCP A;  2E75 D;  1NYK A;  1SQB E;  2DE6 D;  3GCE A;  3L74 E;  3H1K E;  3VMG D;  2XSO A;  4HM2 A;  2DE7 D;  1ULI A;  1P84 E;  4NB9 A;  4NBA D;  4U3F E;  2DE6 A;  3N0Q A;  1O7H A;  4QUR A;  2QJK C;  3GKE A;  4NBH D;  2NWF A;  2DE7 A;  2FYN C;  3GL0 A;  3L72 E;  4QDC A;  4HM6 A;  4NBA A;  2GBW A;  2YFL A;  2HMM A;  2HMJ A;  2YIU C;  3GZY A;  4NBH A;  2IBZ E;  2NVE A;  1O7G A;  2XRX A;  1O7M A;  3L73 E;  4NBG A;  1BE3 E;  1EZV E;  1WQL A;  2NVF A;  2YFI A;  4QDF B;  2QJP C;  3VMH A;  5BOK A;  3D89 A;  3GB4 A;  1SQX E;  1JM1 A;  4H13 D;  1G8J B;  4HM4 A;  2QPZ A;  2BCC E;  2D2C D;  4HM0 A;  2A06 E;  3H1J E;  4PD4 E;  3GTS A;  4OGQ D;  3VCA A;  1Q90 C;  3EQQ A;  2B24 A;  2QJY C;  4P1C H;  2BMO A;  4H44 D;  1EG9 A;  1RFS A;  1FQT A;  4NBF D;  2E76 D;  4NBG D;  1BCC E;  3VMH D;  4HM7 A;  5AEU A;  3C0D A;  1SQP E;  2Q3W A;  2E4Q A;  4QUQ A;  4NBC D;  3H1L E;  4NBD D;  4NBF A;  2CKF A;  4HM1 A;  4NBB D;  2YFJ A;  4HKV A;  2HML A;  2NUK A;  1SQQ E;  4NBC A;  1NDO A;  3VMI A;  3GTE A;  1Z03 A;  4NBD A;  1O7N A;  1UUW A;  2JO6 A;  4NBB A;  1ZRT E;  2BMQ A;  2I7F A;  3AZC A;  3GZX A;  4AIV A;  5AEW A;  1RIE A;  4HM5 A;  3GCF A;  3EN1 A;  2ZT9 D;  1Z01 A;  2DE5 A;  4QUP A;  2GBX A;  3TGU E;  4NBE D;  4P1B H;  1SQV E;  1KB9 E;  2E4P A;  3H1I E;  3GOB A;  3BCC E;  4HJL A;  1PPJ E;  3CX5 E;  1SJG A;  1VF5 D;  2JZA A;  4H0L D;  3FOU A;  3VMI D;  4NBE A;  2HMN A;  1PP9 E;  4HM8 A;  2FYU E;  2BMR A;  4AAY B; 
#chains in the Genus database with same CATH homology
 5KLV E;  1L0N E;  2B1X A;  2XR8 A;  3DQY A;  2NUM A;  4PV1 D;  2HMO A;  2DE5 D;  3GL2 A;  4QCK A;  1NU1 E;  1Z02 A;  5KKZ C;  3GKQ A;  4QDD A;  3CXH E;  1L0L E;  2XSH A;  3L75 E;  3VMG A;  3CWB E;  2HMK A;  4NB8 D;  1O7W A;  3L70 E;  4QDF A;  3H1H E;  2E74 D;  1WW9 A;  1KYO E;  2YVJ B;  1VCK A;  5CXM A;  1NTZ E;  2NVG A;  4HM3 A;  1G8K B;  1O7P A;  1NTK E;  1UUV A;  5KLI C;  3L71 E;  4EMJ B;  5HL4 A;  1VM9 A;  4NB9 D;  1NTM E;  1ULJ A;  2ZYL A;  4NB8 A;  3VCP A;  2E75 D;  1NYK A;  1SQB E;  2DE6 D;  3GCE A;  3L74 E;  3H1K E;  3VMG D;  2XSO A;  4HM2 A;  2DE7 D;  1ULI A;  1P84 E;  4NB9 A;  4NBA D;  4U3F E;  2DE6 A;  3N0Q A;  1O7H A;  4QUR A;  2QJK C;  3GKE A;  4NBH D;  2NWF A;  2DE7 A;  2FYN C;  3GL0 A;  3L72 E;  4QDC A;  4HM6 A;  4NBA A;  2GBW A;  2YFL A;  2HMM A;  2HMJ A;  2YIU C;  3GZY A;  4NBH A;  2IBZ E;  2NVE A;  1O7G A;  2XRX A;  1O7M A;  3L73 E;  4NBG A;  1BE3 E;  1EZV E;  1WQL A;  2NVF A;  2YFI A;  4QDF B;  2QJP C;  3VMH A;  5BOK A;  3D89 A;  3GB4 A;  1SQX E;  1JM1 A;  4H13 D;  1G8J B;  4HM4 A;  2QPZ A;  2BCC E;  2D2C D;  4HM0 A;  2A06 E;  3H1J E;  4PD4 E;  3GTS A;  4OGQ D;  3VCA A;  1Q90 C;  3EQQ A;  2B24 A;  2QJY C;  4P1C H;  2BMO A;  4H44 D;  1EG9 A;  1RFS A;  1FQT A;  4NBF D;  2E76 D;  4NBG D;  1BCC E;  3VMH D;  4HM7 A;  5AEU A;  3C0D A;  1SQP E;  2Q3W A;  2E4Q A;  4QUQ A;  4NBC D;  3H1L E;  4NBD D;  4NBF A;  2CKF A;  4HM1 A;  4NBB D;  2YFJ A;  4HKV A;  2HML A;  2NUK A;  1SQQ E;  4NBC A;  1NDO A;  3VMI A;  3GTE A;  1Z03 A;  4NBD A;  1O7N A;  1UUW A;  2JO6 A;  4NBB A;  1ZRT E;  2BMQ A;  2I7F A;  3AZC A;  3GZX A;  4AIV A;  5AEW A;  1RIE A;  4HM5 A;  3GCF A;  3EN1 A;  2ZT9 D;  1Z01 A;  2DE5 A;  4QUP A;  2GBX A;  3TGU E;  4NBE D;  4P1B H;  1SQV E;  1KB9 E;  2E4P A;  3H1I E;  3GOB A;  3BCC E;  4HJL A;  1PPJ E;  3CX5 E;  1SJG A;  1VF5 D;  2JZA A;  4H0L D;  3FOU A;  3VMI D;  4NBE A;  2HMN A;  1PP9 E;  4HM8 A;  2FYU E;  2BMR A;  4AAY B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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