1O7GA

Naphthalene 1,2-dioxygenase with naphthalene bound in the active site.
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
publication title Crystal Structure of Naphthalene Dioxygenase: Side-on Binding of Dioxygen to Iron
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Oxidoreductase
total genus 163
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2002-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1o7gA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1o7gA01
2CKFA 2HMKA 1NTKE 4NBBD 3CX5E 4NB8D 4NBDD 1L0LE 3N0QA 2QJPC 2B24A 3GL2A 4NBGD 2NWFA 2FYUE 1Z02A 2XSOA 3VMHA 3GL0A 2E75D 2HMJA 2DE5A 1FQTA 1ZRTE 3FOUA 2NUMA 3GTEA 3GKQA 2NVFA 3DQYA 1O7WA 3GCEA 3H1IE 5AEUA 4HM8A 3H1HE 5KLIC 2YFLA 2YFJA 4EMJB 4HM3A 2XRXA 4HKVA 3VMIA 4NBHA 1G8KB 1O7NA 4PD4E 5KLVE 3H1KE 1P84E 4NBAD 4AAYB 1ULIA 4NBCA 2E4PA 3TGUE 3L72E 1O7PA 4NB9A 1WW9A 4QUQA 2NVEA 2YVJB 2DE7D 1L0NE 1PPJE 2HMLA 1G8JB 4H0LD 2QJYC 3VMHD 1SQQE 2HMOA 4HM2A 1SQXE 2YFIA 3L75E 3L74E 4PV1D 4QDCA 2XSHA 4QDDA 3VMGD 1KB9E 4NBED 4QURA 1Z03A 4HJLA 4NBFA 2BCCE 3CXHE 2A06E 2XR8A 4QCKA 4NBHD 1EG9A 1NYKA 4QDFA 1BCCE 2IBZE 4HM1A 1O7GA 2ZT9D 4NBBA 4P1CH 3H1JE 2DE5D 4NB8A 2GBWA 1UUVA 2HMNA 2JO6A 2B1XA 5KKZC 2DE6A 1PP9E 4NBGA 1KYOE 3L71E 4H44D 3BCCE 3AZCA 4P1BH 2Q3WA 2D2CD 3EQQA 5BOKA 2I7FA 3VCPA 3CWBE 1RIEA 1RFSA 2QPZA 3GZXA 1WQLA 4HM5A 2FYNC 1BE3E 2BMOA 1UUWA 2JZAA 3GCFA 2BMRA 4AIVA 4HM6A 2ZYLA 4HM4A 1VM9A 1VCKA 3GZYA 3VCAA 3VMID 3D89A 1EZVE 2E4QA 5CXMA 1VF5D 5AEWA 2HMMA 4NBCD 2DE6D 3GOBA 4HM0A 4NBDA 2E74D 3EN1A 4QUPA 1SJGA 4NB9D 2DE7A 1SQVE 3H1LE 5HL4A 1NU1E 3L73E 2GBXA 2YIUC 1JM1A 1O7MA 1O7HA 3GB4A 4H13D 4U3FE 4QDFB 1ULJA 2BMQA 4HM7A 1NTME 3GTSA 2NUKA 3VMGA 3C0DA 4NBEA 1SQPE 1NDOA 3GKEA 2NVGA 2E76D 4OGQD 4NBFD 1NTZE 1Q90C 3L70E 1SQBE 4NBAA 1Z01A 2QJKC
chains in the Genus database with same CATH superfamily
2CKFA 2HMKA 1NTKE 4NBBD 3CX5E 4NB8D 4NBDD 1L0LE 3N0QA 2QJPC 2B24A 3GL2A 4NBGD 2NWFA 2FYUE 1Z02A 2XSOA 3VMHA 3GL0A 2E75D 2HMJA 2DE5A 1FQTA 1ZRTE 3FOUA 2NUMA 3GTEA 3GKQA 2NVFA 3DQYA 1O7WA 3GCEA 3H1IE 5AEUA 4HM8A 3H1HE 5KLIC 2YFLA 2YFJA 4EMJB 4HM3A 2XRXA 4HKVA 3VMIA 4NBHA 1G8KB 1O7NA 4PD4E 5KLVE 3H1KE 1P84E 4NBAD 4AAYB 1ULIA 4NBCA 2E4PA 3TGUE 3L72E 1O7PA 4NB9A 1WW9A 4QUQA 2NVEA 2YVJB 2DE7D 1L0NE 1PPJE 2HMLA 1G8JB 4H0LD 2QJYC 3VMHD 1SQQE 2HMOA 4HM2A 1SQXE 2YFIA 3L75E 3L74E 4PV1D 4QDCA 2XSHA 4QDDA 3VMGD 1KB9E 4NBED 4QURA 1Z03A 4HJLA 4NBFA 2BCCE 3CXHE 2A06E 2XR8A 4QCKA 4NBHD 1EG9A 1NYKA 4QDFA 1BCCE 2IBZE 4HM1A 1O7GA 2ZT9D 4NBBA 4P1CH 3H1JE 2DE5D 4NB8A 2GBWA 1UUVA 2HMNA 2JO6A 2B1XA 5KKZC 2DE6A 1PP9E 4NBGA 1KYOE 3L71E 4H44D 3BCCE 3AZCA 4P1BH 2Q3WA 2D2CD 3EQQA 5BOKA 2I7FA 3VCPA 3CWBE 1RIEA 1RFSA 2QPZA 3GZXA 1WQLA 4HM5A 2FYNC 1BE3E 2BMOA 1UUWA 2JZAA 3GCFA 2BMRA 4AIVA 4HM6A 2ZYLA 4HM4A 1VM9A 1VCKA 3GZYA 3VCAA 3VMID 3D89A 1EZVE 2E4QA 5CXMA 1VF5D 5AEWA 2HMMA 4NBCD 2DE6D 3GOBA 4HM0A 4NBDA 2E74D 3EN1A 4QUPA 1SJGA 4NB9D 2DE7A 1SQVE 3H1LE 5HL4A 1NU1E 3L73E 2GBXA 2YIUC 1JM1A 1O7MA 1O7HA 3GB4A 4H13D 4U3FE 4QDFB 1ULJA 2BMQA 4HM7A 1NTME 3GTSA 2NUKA 3VMGA 3C0DA 4NBEA 1SQPE 1NDOA 3GKEA 2NVGA 2E76D 4OGQD 4NBFD 1NTZE 1Q90C 3L70E 1SQBE 4NBAA 1Z01A 2QJKC
chains in the Genus database with same CATH topology
2CKFA 2HMKA 1NTKE 4NBBD 3CX5E 4NB8D 4NBDD 1L0LE 3N0QA 2QJPC 2B24A 3GL2A 4NBGD 2NWFA 2FYUE 1Z02A 2XSOA 3VMHA 3GL0A 2E75D 2HMJA 2DE5A 1FQTA 1ZRTE 3FOUA 2NUMA 3GTEA 3GKQA 2NVFA 3DQYA 1O7WA 3GCEA 3H1IE 5AEUA 4HM8A 3H1HE 5KLIC 2YFLA 2YFJA 4EMJB 4HM3A 2XRXA 4HKVA 3VMIA 4NBHA 1G8KB 1O7NA 4PD4E 5KLVE 3H1KE 1P84E 4NBAD 4AAYB 1ULIA 4NBCA 2E4PA 3TGUE 3L72E 1O7PA 4NB9A 1WW9A 4QUQA 2NVEA 2YVJB 2DE7D 1L0NE 1PPJE 2HMLA 1G8JB 4H0LD 2QJYC 3VMHD 1SQQE 2HMOA 4HM2A 1SQXE 2YFIA 3L75E 3L74E 4PV1D 4QDCA 2XSHA 4QDDA 3VMGD 1KB9E 4NBED 4QURA 1Z03A 4HJLA 4NBFA 2BCCE 3CXHE 2A06E 2XR8A 4QCKA 4NBHD 1EG9A 1NYKA 4QDFA 1BCCE 2IBZE 4HM1A 1O7GA 2ZT9D 4NBBA 4P1CH 3H1JE 2DE5D 4NB8A 2GBWA 1UUVA 2HMNA 2JO6A 2B1XA 5KKZC 2DE6A 1PP9E 4NBGA 1KYOE 3L71E 4H44D 3BCCE 3AZCA 4P1BH 2Q3WA 2D2CD 3EQQA 5BOKA 2I7FA 3VCPA 3CWBE 1RIEA 1RFSA 2QPZA 3GZXA 1WQLA 4HM5A 2FYNC 1BE3E 2BMOA 1UUWA 2JZAA 3GCFA 2BMRA 4AIVA 4HM6A 2ZYLA 4HM4A 1VM9A 1VCKA 3GZYA 3VCAA 3VMID 3D89A 1EZVE 2E4QA 5CXMA 1VF5D 5AEWA 2HMMA 4NBCD 2DE6D 3GOBA 4HM0A 4NBDA 2E74D 3EN1A 4QUPA 1SJGA 4NB9D 2DE7A 1SQVE 3H1LE 5HL4A 1NU1E 3L73E 2GBXA 2YIUC 1JM1A 1O7MA 1O7HA 3GB4A 4H13D 4U3FE 4QDFB 1ULJA 2BMQA 4HM7A 1NTME 3GTSA 2NUKA 3VMGA 3C0DA 4NBEA 1SQPE 1NDOA 3GKEA 2NVGA 2E76D 4OGQD 4NBFD 1NTZE 1Q90C 3L70E 1SQBE 4NBAA 1Z01A 2QJKC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CKF A;  2HMK A;  1NTK E;  4NBB D;  3CX5 E;  4NB8 D;  4NBD D;  1L0L E;  3N0Q A;  2QJP C;  2B24 A;  3GL2 A;  4NBG D;  2NWF A;  2FYU E;  1Z02 A;  2XSO A;  3VMH A;  3GL0 A;  2E75 D;  2HMJ A;  2DE5 A;  1FQT A;  1ZRT E;  3FOU A;  2NUM A;  3GTE A;  3GKQ A;  2NVF A;  3DQY A;  1O7W A;  3GCE A;  3H1I E;  5AEU A;  4HM8 A;  3H1H E;  5KLI C;  2YFL A;  2YFJ A;  4EMJ B;  4HM3 A;  2XRX A;  4HKV A;  3VMI A;  4NBH A;  1G8K B;  1O7N A;  4PD4 E;  5KLV E;  3H1K E;  1P84 E;  4NBA D;  4AAY B;  1ULI A;  4NBC A;  2E4P A;  3TGU E;  3L72 E;  1O7P A;  4NB9 A;  1WW9 A;  4QUQ A;  2NVE A;  2YVJ B;  2DE7 D;  1L0N E;  1PPJ E;  2HML A;  1G8J B;  4H0L D;  2QJY C;  3VMH D;  1SQQ E;  2HMO A;  4HM2 A;  1SQX E;  2YFI A;  3L75 E;  3L74 E;  4PV1 D;  4QDC A;  2XSH A;  4QDD A;  3VMG D;  1KB9 E;  4NBE D;  4QUR A;  1Z03 A;  4HJL A;  4NBF A;  2BCC E;  3CXH E;  2A06 E;  2XR8 A;  4QCK A;  4NBH D;  1EG9 A;  1NYK A;  4QDF A;  1BCC E;  2IBZ E;  4HM1 A;  1O7G A;  2ZT9 D;  4NBB A;  4P1C H;  3H1J E;  2DE5 D;  4NB8 A;  2GBW A;  1UUV A;  2HMN A;  2JO6 A;  2B1X A;  5KKZ C;  2DE6 A;  1PP9 E;  4NBG A;  1KYO E;  3L71 E;  4H44 D;  3BCC E;  3AZC A;  4P1B H;  2Q3W A;  2D2C D;  3EQQ A;  5BOK A;  2I7F A;  3VCP A;  3CWB E;  1RIE A;  1RFS A;  2QPZ A;  3GZX A;  1WQL A;  4HM5 A;  2FYN C;  1BE3 E;  2BMO A;  1UUW A;  2JZA A;  3GCF A;  2BMR A;  4AIV A;  4HM6 A;  2ZYL A;  4HM4 A;  1VM9 A;  1VCK A;  3GZY A;  3VCA A;  3VMI D;  3D89 A;  1EZV E;  2E4Q A;  5CXM A;  1VF5 D;  5AEW A;  2HMM A;  4NBC D;  2DE6 D;  3GOB A;  4HM0 A;  4NBD A;  2E74 D;  3EN1 A;  4QUP A;  1SJG A;  4NB9 D;  2DE7 A;  1SQV E;  3H1L E;  5HL4 A;  1NU1 E;  3L73 E;  2GBX A;  2YIU C;  1JM1 A;  1O7M A;  1O7H A;  3GB4 A;  4H13 D;  4U3F E;  4QDF B;  1ULJ A;  2BMQ A;  4HM7 A;  1NTM E;  3GTS A;  2NUK A;  3VMG A;  3C0D A;  4NBE A;  1SQP E;  1NDO A;  3GKE A;  2NVG A;  2E76 D;  4OGQ D;  4NBF D;  1NTZ E;  1Q90 C;  3L70 E;  1SQB E;  4NBA A;  1Z01 A;  2QJK C; 
#chains in the Genus database with same CATH topology
 2CKF A;  2HMK A;  1NTK E;  4NBB D;  3CX5 E;  4NB8 D;  4NBD D;  1L0L E;  3N0Q A;  2QJP C;  2B24 A;  3GL2 A;  4NBG D;  2NWF A;  2FYU E;  1Z02 A;  2XSO A;  3VMH A;  3GL0 A;  2E75 D;  2HMJ A;  2DE5 A;  1FQT A;  1ZRT E;  3FOU A;  2NUM A;  3GTE A;  3GKQ A;  2NVF A;  3DQY A;  1O7W A;  3GCE A;  3H1I E;  5AEU A;  4HM8 A;  3H1H E;  5KLI C;  2YFL A;  2YFJ A;  4EMJ B;  4HM3 A;  2XRX A;  4HKV A;  3VMI A;  4NBH A;  1G8K B;  1O7N A;  4PD4 E;  5KLV E;  3H1K E;  1P84 E;  4NBA D;  4AAY B;  1ULI A;  4NBC A;  2E4P A;  3TGU E;  3L72 E;  1O7P A;  4NB9 A;  1WW9 A;  4QUQ A;  2NVE A;  2YVJ B;  2DE7 D;  1L0N E;  1PPJ E;  2HML A;  1G8J B;  4H0L D;  2QJY C;  3VMH D;  1SQQ E;  2HMO A;  4HM2 A;  1SQX E;  2YFI A;  3L75 E;  3L74 E;  4PV1 D;  4QDC A;  2XSH A;  4QDD A;  3VMG D;  1KB9 E;  4NBE D;  4QUR A;  1Z03 A;  4HJL A;  4NBF A;  2BCC E;  3CXH E;  2A06 E;  2XR8 A;  4QCK A;  4NBH D;  1EG9 A;  1NYK A;  4QDF A;  1BCC E;  2IBZ E;  4HM1 A;  1O7G A;  2ZT9 D;  4NBB A;  4P1C H;  3H1J E;  2DE5 D;  4NB8 A;  2GBW A;  1UUV A;  2HMN A;  2JO6 A;  2B1X A;  5KKZ C;  2DE6 A;  1PP9 E;  4NBG A;  1KYO E;  3L71 E;  4H44 D;  3BCC E;  3AZC A;  4P1B H;  2Q3W A;  2D2C D;  3EQQ A;  5BOK A;  2I7F A;  3VCP A;  3CWB E;  1RIE A;  1RFS A;  2QPZ A;  3GZX A;  1WQL A;  4HM5 A;  2FYN C;  1BE3 E;  2BMO A;  1UUW A;  2JZA A;  3GCF A;  2BMR A;  4AIV A;  4HM6 A;  2ZYL A;  4HM4 A;  1VM9 A;  1VCK A;  3GZY A;  3VCA A;  3VMI D;  3D89 A;  1EZV E;  2E4Q A;  5CXM A;  1VF5 D;  5AEW A;  2HMM A;  4NBC D;  2DE6 D;  3GOB A;  4HM0 A;  4NBD A;  2E74 D;  3EN1 A;  4QUP A;  1SJG A;  4NB9 D;  2DE7 A;  1SQV E;  3H1L E;  5HL4 A;  1NU1 E;  3L73 E;  2GBX A;  2YIU C;  1JM1 A;  1O7M A;  1O7H A;  3GB4 A;  4H13 D;  4U3F E;  4QDF B;  1ULJ A;  2BMQ A;  4HM7 A;  1NTM E;  3GTS A;  2NUK A;  3VMG A;  3C0D A;  4NBE A;  1SQP E;  1NDO A;  3GKE A;  2NVG A;  2E76 D;  4OGQ D;  4NBF D;  1NTZ E;  1Q90 C;  3L70 E;  1SQB E;  4NBA A;  1Z01 A;  2QJK C; 
#chains in the Genus database with same CATH homology
 2CKF A;  2HMK A;  1NTK E;  4NBB D;  3CX5 E;  4NB8 D;  4NBD D;  1L0L E;  3N0Q A;  2QJP C;  2B24 A;  3GL2 A;  4NBG D;  2NWF A;  2FYU E;  1Z02 A;  2XSO A;  3VMH A;  3GL0 A;  2E75 D;  2HMJ A;  2DE5 A;  1FQT A;  1ZRT E;  3FOU A;  2NUM A;  3GTE A;  3GKQ A;  2NVF A;  3DQY A;  1O7W A;  3GCE A;  3H1I E;  5AEU A;  4HM8 A;  3H1H E;  5KLI C;  2YFL A;  2YFJ A;  4EMJ B;  4HM3 A;  2XRX A;  4HKV A;  3VMI A;  4NBH A;  1G8K B;  1O7N A;  4PD4 E;  5KLV E;  3H1K E;  1P84 E;  4NBA D;  4AAY B;  1ULI A;  4NBC A;  2E4P A;  3TGU E;  3L72 E;  1O7P A;  4NB9 A;  1WW9 A;  4QUQ A;  2NVE A;  2YVJ B;  2DE7 D;  1L0N E;  1PPJ E;  2HML A;  1G8J B;  4H0L D;  2QJY C;  3VMH D;  1SQQ E;  2HMO A;  4HM2 A;  1SQX E;  2YFI A;  3L75 E;  3L74 E;  4PV1 D;  4QDC A;  2XSH A;  4QDD A;  3VMG D;  1KB9 E;  4NBE D;  4QUR A;  1Z03 A;  4HJL A;  4NBF A;  2BCC E;  3CXH E;  2A06 E;  2XR8 A;  4QCK A;  4NBH D;  1EG9 A;  1NYK A;  4QDF A;  1BCC E;  2IBZ E;  4HM1 A;  1O7G A;  2ZT9 D;  4NBB A;  4P1C H;  3H1J E;  2DE5 D;  4NB8 A;  2GBW A;  1UUV A;  2HMN A;  2JO6 A;  2B1X A;  5KKZ C;  2DE6 A;  1PP9 E;  4NBG A;  1KYO E;  3L71 E;  4H44 D;  3BCC E;  3AZC A;  4P1B H;  2Q3W A;  2D2C D;  3EQQ A;  5BOK A;  2I7F A;  3VCP A;  3CWB E;  1RIE A;  1RFS A;  2QPZ A;  3GZX A;  1WQL A;  4HM5 A;  2FYN C;  1BE3 E;  2BMO A;  1UUW A;  2JZA A;  3GCF A;  2BMR A;  4AIV A;  4HM6 A;  2ZYL A;  4HM4 A;  1VM9 A;  1VCK A;  3GZY A;  3VCA A;  3VMI D;  3D89 A;  1EZV E;  2E4Q A;  5CXM A;  1VF5 D;  5AEW A;  2HMM A;  4NBC D;  2DE6 D;  3GOB A;  4HM0 A;  4NBD A;  2E74 D;  3EN1 A;  4QUP A;  1SJG A;  4NB9 D;  2DE7 A;  1SQV E;  3H1L E;  5HL4 A;  1NU1 E;  3L73 E;  2GBX A;  2YIU C;  1JM1 A;  1O7M A;  1O7H A;  3GB4 A;  4H13 D;  4U3F E;  4QDF B;  1ULJ A;  2BMQ A;  4HM7 A;  1NTM E;  3GTS A;  2NUK A;  3VMG A;  3C0D A;  4NBE A;  1SQP E;  1NDO A;  3GKE A;  2NVG A;  2E76 D;  4OGQ D;  4NBF D;  1NTZ E;  1Q90 C;  3L70 E;  1SQB E;  4NBA A;  1Z01 A;  2QJK C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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