3VMID

Carbazole- and oxygen-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Terminal oxygenase component of carbazole
publication title Structural insight into the substrate- and dioxygenbinding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9adioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 18
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2011-12-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3vmiD00
2NVEA 1UUVA 1JM1A 1O7WA 2NWFA 4HM8A 3GKEA 1O7HA 4NBBD 3VCPA 2HMNA 2XSOA 2DE6D 3EQQA 3BCCE 4PD4E 2YFJA 4PV1D 1KB9E 2FYUE 1RFSA 4H44D 3TGUE 2NUKA 1VF5D 3L70E 2E74D 4HM3A 4AIVA 5HL4A 1UUWA 4NBHD 3GL2A 3GZYA 1WQLA 4QUPA 2JO6A 1G8KB 5CXMA 3CX5E 3GOBA 3L73E 3DQYA 2JZAA 4NBGD 1PPJE 2HMJA 2CKFA 1NTZE 2BCCE 4U3FE 2YIUC 1SQBE 1P84E 2D2CD 3EN1A 4NBCD 4OGQD 5AEWA 2B1XA 2GBXA 4NBDD 4P1CH 3L72E 1PP9E 2YVJB 3C0DA 1O7MA 2HMKA 3GCEA 3GTSA 4QDFB 1Q90C 5KLVE 1NTME 2B24A 2XRXA 3GB4A 4HM4A 2QJPC 4HM7A 4NB9D 2NVGA 3L75E 5AEUA 3GTEA 5KKZC 1NYKA 1BE3E 3GZXA 5BOKA 2GBWA 2I7FA 4H0LD 4EMJB 3H1IE 3H1JE 3VMGD 1EG9A 3H1KE 1SJGA 4H13D 2HMMA 2BMRA 4HM0A 1L0LE 3VMID 1FQTA 4HM1A 1VM9A 1ULJA 4P1BH 4HJLA 1KYOE 3GL0A 1NDOA 2QJYC 3CXHE 2HMOA 3L74E 1L0NE 2QPZA 1VCKA 1SQPE 1SQQE 2ZYLA 3H1LE 3H1HE 1O7NA 1ZRTE 3AZCA 1RIEA 1O7GA 4NB8D 2BMOA 4QDFA 4QDCA 1NTKE 1BCCE 2NVFA 4HM5A 1O7PA 2DE7D 1SQVE 2Q3WA 2QJKC 4QUQA 3N0QA 1EZVE 2A06E 2E75D 4HM6A 2ZT9D 1SQXE 2E4PA 2IBZE 3D89A 4QCKA 2YFIA 4HKVA 2BMQA 2DE5D 2XSHA 1G8JB 4NBAD 2E4QA 2FYNC 4NBED 2XR8A 2HMLA 2E76D 3L71E 4HM2A 1ULIA 5KLIC 3VMHD 3CWBE 3VCAA 4QURA 1NU1E 3FOUA 4QDDA 4AAYB 2NUMA 4NBFD 2YFLA
chains in the Genus database with same CATH superfamily
2NVEA 1UUVA 1JM1A 1O7WA 2NWFA 4HM8A 3GKEA 1O7HA 4NBBD 3VCPA 2HMNA 2XSOA 2DE6D 3EQQA 3BCCE 4PD4E 2YFJA 4PV1D 1KB9E 2FYUE 1RFSA 4H44D 3TGUE 2NUKA 1VF5D 3L70E 2E74D 4HM3A 4AIVA 5HL4A 1UUWA 4NBHD 3GL2A 3GZYA 1WQLA 4QUPA 2JO6A 1G8KB 5CXMA 3CX5E 3GOBA 3L73E 3DQYA 2JZAA 4NBGD 1PPJE 2HMJA 2CKFA 1NTZE 2BCCE 4U3FE 2YIUC 1SQBE 1P84E 2D2CD 3EN1A 4NBCD 4OGQD 5AEWA 2B1XA 2GBXA 4NBDD 4P1CH 3L72E 1PP9E 2YVJB 3C0DA 1O7MA 2HMKA 3GCEA 3GTSA 4QDFB 1Q90C 5KLVE 1NTME 2B24A 2XRXA 3GB4A 4HM4A 2QJPC 4HM7A 4NB9D 2NVGA 3L75E 5AEUA 3GTEA 5KKZC 1NYKA 1BE3E 3GZXA 5BOKA 2GBWA 2I7FA 4H0LD 4EMJB 3H1IE 3H1JE 3VMGD 1EG9A 3H1KE 1SJGA 4H13D 2HMMA 2BMRA 4HM0A 1L0LE 3VMID 1FQTA 4HM1A 1VM9A 1ULJA 4P1BH 4HJLA 1KYOE 3GL0A 1NDOA 2QJYC 3CXHE 2HMOA 3L74E 1L0NE 2QPZA 1VCKA 1SQPE 1SQQE 2ZYLA 3H1LE 3H1HE 1O7NA 1ZRTE 3AZCA 1RIEA 1O7GA 4NB8D 2BMOA 4QDFA 4QDCA 1NTKE 1BCCE 2NVFA 4HM5A 1O7PA 2DE7D 1SQVE 2Q3WA 2QJKC 4QUQA 3N0QA 1EZVE 2A06E 2E75D 4HM6A 2ZT9D 1SQXE 2E4PA 2IBZE 3D89A 4QCKA 2YFIA 4HKVA 2BMQA 2DE5D 2XSHA 1G8JB 4NBAD 2E4QA 2FYNC 4NBED 2XR8A 2HMLA 2E76D 3L71E 4HM2A 1ULIA 5KLIC 3VMHD 3CWBE 3VCAA 4QURA 1NU1E 3FOUA 4QDDA 4AAYB 2NUMA 4NBFD 2YFLA
chains in the Genus database with same CATH topology
2NVEA 1UUVA 1JM1A 1O7WA 2NWFA 4HM8A 3GKEA 1O7HA 4NBBD 3VCPA 2HMNA 2XSOA 2DE6D 3EQQA 3BCCE 4PD4E 2YFJA 4PV1D 1KB9E 2FYUE 1RFSA 4H44D 3TGUE 2NUKA 1VF5D 3L70E 2E74D 4HM3A 4AIVA 5HL4A 1UUWA 4NBHD 3GL2A 3GZYA 1WQLA 4QUPA 2JO6A 1G8KB 5CXMA 3CX5E 3GOBA 3L73E 3DQYA 2JZAA 4NBGD 1PPJE 2HMJA 2CKFA 1NTZE 2BCCE 4U3FE 2YIUC 1SQBE 1P84E 2D2CD 3EN1A 4NBCD 4OGQD 5AEWA 2B1XA 2GBXA 4NBDD 4P1CH 3L72E 1PP9E 2YVJB 3C0DA 1O7MA 2HMKA 3GCEA 3GTSA 4QDFB 1Q90C 5KLVE 1NTME 2B24A 2XRXA 3GB4A 4HM4A 2QJPC 4HM7A 4NB9D 2NVGA 3L75E 5AEUA 3GTEA 5KKZC 1NYKA 1BE3E 3GZXA 5BOKA 2GBWA 2I7FA 4H0LD 4EMJB 3H1IE 3H1JE 3VMGD 1EG9A 3H1KE 1SJGA 4H13D 2HMMA 2BMRA 4HM0A 1L0LE 3VMID 1FQTA 4HM1A 1VM9A 1ULJA 4P1BH 4HJLA 1KYOE 3GL0A 1NDOA 2QJYC 3CXHE 2HMOA 3L74E 1L0NE 2QPZA 1VCKA 1SQPE 1SQQE 2ZYLA 3H1LE 3H1HE 1O7NA 1ZRTE 3AZCA 1RIEA 1O7GA 4NB8D 2BMOA 4QDFA 4QDCA 1NTKE 1BCCE 2NVFA 4HM5A 1O7PA 2DE7D 1SQVE 2Q3WA 2QJKC 4QUQA 3N0QA 1EZVE 2A06E 2E75D 4HM6A 2ZT9D 1SQXE 2E4PA 2IBZE 3D89A 4QCKA 2YFIA 4HKVA 2BMQA 2DE5D 2XSHA 1G8JB 4NBAD 2E4QA 2FYNC 4NBED 2XR8A 2HMLA 2E76D 3L71E 4HM2A 1ULIA 5KLIC 3VMHD 3CWBE 3VCAA 4QURA 1NU1E 3FOUA 4QDDA 4AAYB 2NUMA 4NBFD 2YFLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NVE A;  1UUV A;  1JM1 A;  1O7W A;  2NWF A;  4HM8 A;  3GKE A;  1O7H A;  4NBB D;  3VCP A;  2HMN A;  2XSO A;  2DE6 D;  3EQQ A;  3BCC E;  4PD4 E;  2YFJ A;  4PV1 D;  1KB9 E;  2FYU E;  1RFS A;  4H44 D;  3TGU E;  2NUK A;  1VF5 D;  3L70 E;  2E74 D;  4HM3 A;  4AIV A;  5HL4 A;  1UUW A;  4NBH D;  3GL2 A;  3GZY A;  1WQL A;  4QUP A;  2JO6 A;  1G8K B;  5CXM A;  3CX5 E;  3GOB A;  3L73 E;  3DQY A;  2JZA A;  4NBG D;  1PPJ E;  2HMJ A;  2CKF A;  1NTZ E;  2BCC E;  4U3F E;  2YIU C;  1SQB E;  1P84 E;  2D2C D;  3EN1 A;  4NBC D;  4OGQ D;  5AEW A;  2B1X A;  2GBX A;  4NBD D;  4P1C H;  3L72 E;  1PP9 E;  2YVJ B;  3C0D A;  1O7M A;  2HMK A;  3GCE A;  3GTS A;  4QDF B;  1Q90 C;  5KLV E;  1NTM E;  2B24 A;  2XRX A;  3GB4 A;  4HM4 A;  2QJP C;  4HM7 A;  4NB9 D;  2NVG A;  3L75 E;  5AEU A;  3GTE A;  5KKZ C;  1NYK A;  1BE3 E;  3GZX A;  5BOK A;  2GBW A;  2I7F A;  4H0L D;  4EMJ B;  3H1I E;  3H1J E;  3VMG D;  1EG9 A;  3H1K E;  1SJG A;  4H13 D;  2HMM A;  2BMR A;  4HM0 A;  1L0L E;  3VMI D;  1FQT A;  4HM1 A;  1VM9 A;  1ULJ A;  4P1B H;  4HJL A;  1KYO E;  3GL0 A;  1NDO A;  2QJY C;  3CXH E;  2HMO A;  3L74 E;  1L0N E;  2QPZ A;  1VCK A;  1SQP E;  1SQQ E;  2ZYL A;  3H1L E;  3H1H E;  1O7N A;  1ZRT E;  3AZC A;  1RIE A;  1O7G A;  4NB8 D;  2BMO A;  4QDF A;  4QDC A;  1NTK E;  1BCC E;  2NVF A;  4HM5 A;  1O7P A;  2DE7 D;  1SQV E;  2Q3W A;  2QJK C;  4QUQ A;  3N0Q A;  1EZV E;  2A06 E;  2E75 D;  4HM6 A;  2ZT9 D;  1SQX E;  2E4P A;  2IBZ E;  3D89 A;  4QCK A;  2YFI A;  4HKV A;  2BMQ A;  2DE5 D;  2XSH A;  1G8J B;  4NBA D;  2E4Q A;  2FYN C;  4NBE D;  2XR8 A;  2HML A;  2E76 D;  3L71 E;  4HM2 A;  1ULI A;  5KLI C;  3VMH D;  3CWB E;  3VCA A;  4QUR A;  1NU1 E;  3FOU A;  4QDD A;  4AAY B;  2NUM A;  4NBF D;  2YFL A; 
#chains in the Genus database with same CATH topology
 2NVE A;  1UUV A;  1JM1 A;  1O7W A;  2NWF A;  4HM8 A;  3GKE A;  1O7H A;  4NBB D;  3VCP A;  2HMN A;  2XSO A;  2DE6 D;  3EQQ A;  3BCC E;  4PD4 E;  2YFJ A;  4PV1 D;  1KB9 E;  2FYU E;  1RFS A;  4H44 D;  3TGU E;  2NUK A;  1VF5 D;  3L70 E;  2E74 D;  4HM3 A;  4AIV A;  5HL4 A;  1UUW A;  4NBH D;  3GL2 A;  3GZY A;  1WQL A;  4QUP A;  2JO6 A;  1G8K B;  5CXM A;  3CX5 E;  3GOB A;  3L73 E;  3DQY A;  2JZA A;  4NBG D;  1PPJ E;  2HMJ A;  2CKF A;  1NTZ E;  2BCC E;  4U3F E;  2YIU C;  1SQB E;  1P84 E;  2D2C D;  3EN1 A;  4NBC D;  4OGQ D;  5AEW A;  2B1X A;  2GBX A;  4NBD D;  4P1C H;  3L72 E;  1PP9 E;  2YVJ B;  3C0D A;  1O7M A;  2HMK A;  3GCE A;  3GTS A;  4QDF B;  1Q90 C;  5KLV E;  1NTM E;  2B24 A;  2XRX A;  3GB4 A;  4HM4 A;  2QJP C;  4HM7 A;  4NB9 D;  2NVG A;  3L75 E;  5AEU A;  3GTE A;  5KKZ C;  1NYK A;  1BE3 E;  3GZX A;  5BOK A;  2GBW A;  2I7F A;  4H0L D;  4EMJ B;  3H1I E;  3H1J E;  3VMG D;  1EG9 A;  3H1K E;  1SJG A;  4H13 D;  2HMM A;  2BMR A;  4HM0 A;  1L0L E;  3VMI D;  1FQT A;  4HM1 A;  1VM9 A;  1ULJ A;  4P1B H;  4HJL A;  1KYO E;  3GL0 A;  1NDO A;  2QJY C;  3CXH E;  2HMO A;  3L74 E;  1L0N E;  2QPZ A;  1VCK A;  1SQP E;  1SQQ E;  2ZYL A;  3H1L E;  3H1H E;  1O7N A;  1ZRT E;  3AZC A;  1RIE A;  1O7G A;  4NB8 D;  2BMO A;  4QDF A;  4QDC A;  1NTK E;  1BCC E;  2NVF A;  4HM5 A;  1O7P A;  2DE7 D;  1SQV E;  2Q3W A;  2QJK C;  4QUQ A;  3N0Q A;  1EZV E;  2A06 E;  2E75 D;  4HM6 A;  2ZT9 D;  1SQX E;  2E4P A;  2IBZ E;  3D89 A;  4QCK A;  2YFI A;  4HKV A;  2BMQ A;  2DE5 D;  2XSH A;  1G8J B;  4NBA D;  2E4Q A;  2FYN C;  4NBE D;  2XR8 A;  2HML A;  2E76 D;  3L71 E;  4HM2 A;  1ULI A;  5KLI C;  3VMH D;  3CWB E;  3VCA A;  4QUR A;  1NU1 E;  3FOU A;  4QDD A;  4AAY B;  2NUM A;  4NBF D;  2YFL A; 
#chains in the Genus database with same CATH homology
 2NVE A;  1UUV A;  1JM1 A;  1O7W A;  2NWF A;  4HM8 A;  3GKE A;  1O7H A;  4NBB D;  3VCP A;  2HMN A;  2XSO A;  2DE6 D;  3EQQ A;  3BCC E;  4PD4 E;  2YFJ A;  4PV1 D;  1KB9 E;  2FYU E;  1RFS A;  4H44 D;  3TGU E;  2NUK A;  1VF5 D;  3L70 E;  2E74 D;  4HM3 A;  4AIV A;  5HL4 A;  1UUW A;  4NBH D;  3GL2 A;  3GZY A;  1WQL A;  4QUP A;  2JO6 A;  1G8K B;  5CXM A;  3CX5 E;  3GOB A;  3L73 E;  3DQY A;  2JZA A;  4NBG D;  1PPJ E;  2HMJ A;  2CKF A;  1NTZ E;  2BCC E;  4U3F E;  2YIU C;  1SQB E;  1P84 E;  2D2C D;  3EN1 A;  4NBC D;  4OGQ D;  5AEW A;  2B1X A;  2GBX A;  4NBD D;  4P1C H;  3L72 E;  1PP9 E;  2YVJ B;  3C0D A;  1O7M A;  2HMK A;  3GCE A;  3GTS A;  4QDF B;  1Q90 C;  5KLV E;  1NTM E;  2B24 A;  2XRX A;  3GB4 A;  4HM4 A;  2QJP C;  4HM7 A;  4NB9 D;  2NVG A;  3L75 E;  5AEU A;  3GTE A;  5KKZ C;  1NYK A;  1BE3 E;  3GZX A;  5BOK A;  2GBW A;  2I7F A;  4H0L D;  4EMJ B;  3H1I E;  3H1J E;  3VMG D;  1EG9 A;  3H1K E;  1SJG A;  4H13 D;  2HMM A;  2BMR A;  4HM0 A;  1L0L E;  3VMI D;  1FQT A;  4HM1 A;  1VM9 A;  1ULJ A;  4P1B H;  4HJL A;  1KYO E;  3GL0 A;  1NDO A;  2QJY C;  3CXH E;  2HMO A;  3L74 E;  1L0N E;  2QPZ A;  1VCK A;  1SQP E;  1SQQ E;  2ZYL A;  3H1L E;  3H1H E;  1O7N A;  1ZRT E;  3AZC A;  1RIE A;  1O7G A;  4NB8 D;  2BMO A;  4QDF A;  4QDC A;  1NTK E;  1BCC E;  2NVF A;  4HM5 A;  1O7P A;  2DE7 D;  1SQV E;  2Q3W A;  2QJK C;  4QUQ A;  3N0Q A;  1EZV E;  2A06 E;  2E75 D;  4HM6 A;  2ZT9 D;  1SQX E;  2E4P A;  2IBZ E;  3D89 A;  4QCK A;  2YFI A;  4HKV A;  2BMQ A;  2DE5 D;  2XSH A;  1G8J B;  4NBA D;  2E4Q A;  2FYN C;  4NBE D;  2XR8 A;  2HML A;  2E76 D;  3L71 E;  4HM2 A;  1ULI A;  5KLI C;  3VMH D;  3CWB E;  3VCA A;  4QUR A;  1NU1 E;  3FOU A;  4QDD A;  4AAY B;  2NUM A;  4NBF D;  2YFL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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