3VMID

Carbazole- and oxygen-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
104
structure length
104
Chain Sequence
b'IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Terminal oxygenase component of carbazole
publication title Structural insight into the substrate- and dioxygenbinding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9adioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 18
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2011-12-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3vmiD00
3GCEA 4NB8D 1G8KB 3H1IE 2ZT9D 4HM4A 2QJKC 4H44D 1O7HA 3C0DA 4NBGD 1NYKA 2E75D 3GTSA 3CX5E 1O7WA 1BE3E 5AEUA 1RIEA 5CXMA 4AAYB 3N0QA 4NBCD 2FYNC 3L74E 5HL4A 2NVEA 4HM5A 2IBZE 1KB9E 4HM8A 1O7NA 1L0LE 3GZXA 4HM0A 1RFSA 1SQQE 1UUVA 2CKFA 2QJYC 2XRXA 2ZYLA 3D89A 2HMMA 4EMJB 1FQTA 4QURA 1NDOA 1VCKA 2B24A 4NBBD 4HM7A 1SQXE 3GB4A 2QJPC 1SQVE 2E4PA 4H13D 2JZAA 2XSOA 2YFIA 3VMGD 4NB9D 2D2CD 4NBED 3FOUA 4PD4E 2A06E 2NWFA 3VMHD 1SQPE 5KLVE 1JM1A 2GBWA 2BCCE 1SQBE 1ULIA 3DQYA 3L71E 4HM3A 3L75E 1O7GA 3L72E 4HM6A 3H1JE 1EZVE 2HMNA 4QDCA 1Q90C 2E74D 4AIVA 2HMKA 3VMID 4U3FE 2YFLA 3L70E 2XR8A 3CXHE 3GOBA 1ZRTE 3BCCE 1O7MA 2YVJB 4P1BH 2YIUC 3EN1A 5AEWA 3L73E 5BOKA 4HJLA 2Q3WA 2HMLA 2GBXA 2YFJA 4HM2A 3AZCA 2HMOA 1P84E 5KLIC 2NUMA 2XSHA 2I7FA 2QPZA 1O7PA 1PP9E 4NBAD 4QDFB 2NUKA 2E76D 4QCKA 4QUPA 2FYUE 1NTME 1KYOE 1EG9A 2BMQA 2DE6D 3EQQA 4NBHD 4QDDA 2NVGA 4HKVA 1BCCE 1G8JB 2E4QA 2BMRA 3GKEA 1NU1E 1VM9A 2HMJA 1PPJE 3H1KE 1SJGA 4NBFD 2DE7D 2JO6A 1UUWA 4HM1A 3GTEA 3GL0A 3GL2A 1ULJA 1NTKE 1L0NE 3H1HE 4PV1D 1VF5D 1NTZE 4P1CH 3GZYA 4QDFA 4H0LD 4NBDD 2DE5D 2BMOA 3VCPA 2NVFA 2B1XA 1WQLA 4QUQA 4OGQD 3VCAA 3CWBE 3TGUE 3H1LE 5KKZC
chains in the Genus database with same CATH superfamily
3GCEA 4NB8D 1G8KB 3H1IE 2ZT9D 4HM4A 2QJKC 4H44D 1O7HA 3C0DA 4NBGD 1NYKA 2E75D 3GTSA 3CX5E 1O7WA 1BE3E 5AEUA 1RIEA 5CXMA 4AAYB 3N0QA 4NBCD 2FYNC 3L74E 5HL4A 2NVEA 4HM5A 2IBZE 1KB9E 4HM8A 1O7NA 1L0LE 3GZXA 4HM0A 1RFSA 1SQQE 1UUVA 2CKFA 2QJYC 2XRXA 2ZYLA 3D89A 2HMMA 4EMJB 1FQTA 4QURA 1NDOA 1VCKA 2B24A 4NBBD 4HM7A 1SQXE 3GB4A 2QJPC 1SQVE 2E4PA 4H13D 2JZAA 2XSOA 2YFIA 3VMGD 4NB9D 2D2CD 4NBED 3FOUA 4PD4E 2A06E 2NWFA 3VMHD 1SQPE 5KLVE 1JM1A 2GBWA 2BCCE 1SQBE 1ULIA 3DQYA 3L71E 4HM3A 3L75E 1O7GA 3L72E 4HM6A 3H1JE 1EZVE 2HMNA 4QDCA 1Q90C 2E74D 4AIVA 2HMKA 3VMID 4U3FE 2YFLA 3L70E 2XR8A 3CXHE 3GOBA 1ZRTE 3BCCE 1O7MA 2YVJB 4P1BH 2YIUC 3EN1A 5AEWA 3L73E 5BOKA 4HJLA 2Q3WA 2HMLA 2GBXA 2YFJA 4HM2A 3AZCA 2HMOA 1P84E 5KLIC 2NUMA 2XSHA 2I7FA 2QPZA 1O7PA 1PP9E 4NBAD 4QDFB 2NUKA 2E76D 4QCKA 4QUPA 2FYUE 1NTME 1KYOE 1EG9A 2BMQA 2DE6D 3EQQA 4NBHD 4QDDA 2NVGA 4HKVA 1BCCE 1G8JB 2E4QA 2BMRA 3GKEA 1NU1E 1VM9A 2HMJA 1PPJE 3H1KE 1SJGA 4NBFD 2DE7D 2JO6A 1UUWA 4HM1A 3GTEA 3GL0A 3GL2A 1ULJA 1NTKE 1L0NE 3H1HE 4PV1D 1VF5D 1NTZE 4P1CH 3GZYA 4QDFA 4H0LD 4NBDD 2DE5D 2BMOA 3VCPA 2NVFA 2B1XA 1WQLA 4QUQA 4OGQD 3VCAA 3CWBE 3TGUE 3H1LE 5KKZC
chains in the Genus database with same CATH topology
3GCEA 4NB8D 1G8KB 3H1IE 2ZT9D 4HM4A 2QJKC 4H44D 1O7HA 3C0DA 4NBGD 1NYKA 2E75D 3GTSA 3CX5E 1O7WA 1BE3E 5AEUA 1RIEA 5CXMA 4AAYB 3N0QA 4NBCD 2FYNC 3L74E 5HL4A 2NVEA 4HM5A 2IBZE 1KB9E 4HM8A 1O7NA 1L0LE 3GZXA 4HM0A 1RFSA 1SQQE 1UUVA 2CKFA 2QJYC 2XRXA 2ZYLA 3D89A 2HMMA 4EMJB 1FQTA 4QURA 1NDOA 1VCKA 2B24A 4NBBD 4HM7A 1SQXE 3GB4A 2QJPC 1SQVE 2E4PA 4H13D 2JZAA 2XSOA 2YFIA 3VMGD 4NB9D 2D2CD 4NBED 3FOUA 4PD4E 2A06E 2NWFA 3VMHD 1SQPE 5KLVE 1JM1A 2GBWA 2BCCE 1SQBE 1ULIA 3DQYA 3L71E 4HM3A 3L75E 1O7GA 3L72E 4HM6A 3H1JE 1EZVE 2HMNA 4QDCA 1Q90C 2E74D 4AIVA 2HMKA 3VMID 4U3FE 2YFLA 3L70E 2XR8A 3CXHE 3GOBA 1ZRTE 3BCCE 1O7MA 2YVJB 4P1BH 2YIUC 3EN1A 5AEWA 3L73E 5BOKA 4HJLA 2Q3WA 2HMLA 2GBXA 2YFJA 4HM2A 3AZCA 2HMOA 1P84E 5KLIC 2NUMA 2XSHA 2I7FA 2QPZA 1O7PA 1PP9E 4NBAD 4QDFB 2NUKA 2E76D 4QCKA 4QUPA 2FYUE 1NTME 1KYOE 1EG9A 2BMQA 2DE6D 3EQQA 4NBHD 4QDDA 2NVGA 4HKVA 1BCCE 1G8JB 2E4QA 2BMRA 3GKEA 1NU1E 1VM9A 2HMJA 1PPJE 3H1KE 1SJGA 4NBFD 2DE7D 2JO6A 1UUWA 4HM1A 3GTEA 3GL0A 3GL2A 1ULJA 1NTKE 1L0NE 3H1HE 4PV1D 1VF5D 1NTZE 4P1CH 3GZYA 4QDFA 4H0LD 4NBDD 2DE5D 2BMOA 3VCPA 2NVFA 2B1XA 1WQLA 4QUQA 4OGQD 3VCAA 3CWBE 3TGUE 3H1LE 5KKZC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GCE A;  4NB8 D;  1G8K B;  3H1I E;  2ZT9 D;  4HM4 A;  2QJK C;  4H44 D;  1O7H A;  3C0D A;  4NBG D;  1NYK A;  2E75 D;  3GTS A;  3CX5 E;  1O7W A;  1BE3 E;  5AEU A;  1RIE A;  5CXM A;  4AAY B;  3N0Q A;  4NBC D;  2FYN C;  3L74 E;  5HL4 A;  2NVE A;  4HM5 A;  2IBZ E;  1KB9 E;  4HM8 A;  1O7N A;  1L0L E;  3GZX A;  4HM0 A;  1RFS A;  1SQQ E;  1UUV A;  2CKF A;  2QJY C;  2XRX A;  2ZYL A;  3D89 A;  2HMM A;  4EMJ B;  1FQT A;  4QUR A;  1NDO A;  1VCK A;  2B24 A;  4NBB D;  4HM7 A;  1SQX E;  3GB4 A;  2QJP C;  1SQV E;  2E4P A;  4H13 D;  2JZA A;  2XSO A;  2YFI A;  3VMG D;  4NB9 D;  2D2C D;  4NBE D;  3FOU A;  4PD4 E;  2A06 E;  2NWF A;  3VMH D;  1SQP E;  5KLV E;  1JM1 A;  2GBW A;  2BCC E;  1SQB E;  1ULI A;  3DQY A;  3L71 E;  4HM3 A;  3L75 E;  1O7G A;  3L72 E;  4HM6 A;  3H1J E;  1EZV E;  2HMN A;  4QDC A;  1Q90 C;  2E74 D;  4AIV A;  2HMK A;  3VMI D;  4U3F E;  2YFL A;  3L70 E;  2XR8 A;  3CXH E;  3GOB A;  1ZRT E;  3BCC E;  1O7M A;  2YVJ B;  4P1B H;  2YIU C;  3EN1 A;  5AEW A;  3L73 E;  5BOK A;  4HJL A;  2Q3W A;  2HML A;  2GBX A;  2YFJ A;  4HM2 A;  3AZC A;  2HMO A;  1P84 E;  5KLI C;  2NUM A;  2XSH A;  2I7F A;  2QPZ A;  1O7P A;  1PP9 E;  4NBA D;  4QDF B;  2NUK A;  2E76 D;  4QCK A;  4QUP A;  2FYU E;  1NTM E;  1KYO E;  1EG9 A;  2BMQ A;  2DE6 D;  3EQQ A;  4NBH D;  4QDD A;  2NVG A;  4HKV A;  1BCC E;  1G8J B;  2E4Q A;  2BMR A;  3GKE A;  1NU1 E;  1VM9 A;  2HMJ A;  1PPJ E;  3H1K E;  1SJG A;  4NBF D;  2DE7 D;  2JO6 A;  1UUW A;  4HM1 A;  3GTE A;  3GL0 A;  3GL2 A;  1ULJ A;  1NTK E;  1L0N E;  3H1H E;  4PV1 D;  1VF5 D;  1NTZ E;  4P1C H;  3GZY A;  4QDF A;  4H0L D;  4NBD D;  2DE5 D;  2BMO A;  3VCP A;  2NVF A;  2B1X A;  1WQL A;  4QUQ A;  4OGQ D;  3VCA A;  3CWB E;  3TGU E;  3H1L E;  5KKZ C; 
#chains in the Genus database with same CATH topology
 3GCE A;  4NB8 D;  1G8K B;  3H1I E;  2ZT9 D;  4HM4 A;  2QJK C;  4H44 D;  1O7H A;  3C0D A;  4NBG D;  1NYK A;  2E75 D;  3GTS A;  3CX5 E;  1O7W A;  1BE3 E;  5AEU A;  1RIE A;  5CXM A;  4AAY B;  3N0Q A;  4NBC D;  2FYN C;  3L74 E;  5HL4 A;  2NVE A;  4HM5 A;  2IBZ E;  1KB9 E;  4HM8 A;  1O7N A;  1L0L E;  3GZX A;  4HM0 A;  1RFS A;  1SQQ E;  1UUV A;  2CKF A;  2QJY C;  2XRX A;  2ZYL A;  3D89 A;  2HMM A;  4EMJ B;  1FQT A;  4QUR A;  1NDO A;  1VCK A;  2B24 A;  4NBB D;  4HM7 A;  1SQX E;  3GB4 A;  2QJP C;  1SQV E;  2E4P A;  4H13 D;  2JZA A;  2XSO A;  2YFI A;  3VMG D;  4NB9 D;  2D2C D;  4NBE D;  3FOU A;  4PD4 E;  2A06 E;  2NWF A;  3VMH D;  1SQP E;  5KLV E;  1JM1 A;  2GBW A;  2BCC E;  1SQB E;  1ULI A;  3DQY A;  3L71 E;  4HM3 A;  3L75 E;  1O7G A;  3L72 E;  4HM6 A;  3H1J E;  1EZV E;  2HMN A;  4QDC A;  1Q90 C;  2E74 D;  4AIV A;  2HMK A;  3VMI D;  4U3F E;  2YFL A;  3L70 E;  2XR8 A;  3CXH E;  3GOB A;  1ZRT E;  3BCC E;  1O7M A;  2YVJ B;  4P1B H;  2YIU C;  3EN1 A;  5AEW A;  3L73 E;  5BOK A;  4HJL A;  2Q3W A;  2HML A;  2GBX A;  2YFJ A;  4HM2 A;  3AZC A;  2HMO A;  1P84 E;  5KLI C;  2NUM A;  2XSH A;  2I7F A;  2QPZ A;  1O7P A;  1PP9 E;  4NBA D;  4QDF B;  2NUK A;  2E76 D;  4QCK A;  4QUP A;  2FYU E;  1NTM E;  1KYO E;  1EG9 A;  2BMQ A;  2DE6 D;  3EQQ A;  4NBH D;  4QDD A;  2NVG A;  4HKV A;  1BCC E;  1G8J B;  2E4Q A;  2BMR A;  3GKE A;  1NU1 E;  1VM9 A;  2HMJ A;  1PPJ E;  3H1K E;  1SJG A;  4NBF D;  2DE7 D;  2JO6 A;  1UUW A;  4HM1 A;  3GTE A;  3GL0 A;  3GL2 A;  1ULJ A;  1NTK E;  1L0N E;  3H1H E;  4PV1 D;  1VF5 D;  1NTZ E;  4P1C H;  3GZY A;  4QDF A;  4H0L D;  4NBD D;  2DE5 D;  2BMO A;  3VCP A;  2NVF A;  2B1X A;  1WQL A;  4QUQ A;  4OGQ D;  3VCA A;  3CWB E;  3TGU E;  3H1L E;  5KKZ C; 
#chains in the Genus database with same CATH homology
 3GCE A;  4NB8 D;  1G8K B;  3H1I E;  2ZT9 D;  4HM4 A;  2QJK C;  4H44 D;  1O7H A;  3C0D A;  4NBG D;  1NYK A;  2E75 D;  3GTS A;  3CX5 E;  1O7W A;  1BE3 E;  5AEU A;  1RIE A;  5CXM A;  4AAY B;  3N0Q A;  4NBC D;  2FYN C;  3L74 E;  5HL4 A;  2NVE A;  4HM5 A;  2IBZ E;  1KB9 E;  4HM8 A;  1O7N A;  1L0L E;  3GZX A;  4HM0 A;  1RFS A;  1SQQ E;  1UUV A;  2CKF A;  2QJY C;  2XRX A;  2ZYL A;  3D89 A;  2HMM A;  4EMJ B;  1FQT A;  4QUR A;  1NDO A;  1VCK A;  2B24 A;  4NBB D;  4HM7 A;  1SQX E;  3GB4 A;  2QJP C;  1SQV E;  2E4P A;  4H13 D;  2JZA A;  2XSO A;  2YFI A;  3VMG D;  4NB9 D;  2D2C D;  4NBE D;  3FOU A;  4PD4 E;  2A06 E;  2NWF A;  3VMH D;  1SQP E;  5KLV E;  1JM1 A;  2GBW A;  2BCC E;  1SQB E;  1ULI A;  3DQY A;  3L71 E;  4HM3 A;  3L75 E;  1O7G A;  3L72 E;  4HM6 A;  3H1J E;  1EZV E;  2HMN A;  4QDC A;  1Q90 C;  2E74 D;  4AIV A;  2HMK A;  3VMI D;  4U3F E;  2YFL A;  3L70 E;  2XR8 A;  3CXH E;  3GOB A;  1ZRT E;  3BCC E;  1O7M A;  2YVJ B;  4P1B H;  2YIU C;  3EN1 A;  5AEW A;  3L73 E;  5BOK A;  4HJL A;  2Q3W A;  2HML A;  2GBX A;  2YFJ A;  4HM2 A;  3AZC A;  2HMO A;  1P84 E;  5KLI C;  2NUM A;  2XSH A;  2I7F A;  2QPZ A;  1O7P A;  1PP9 E;  4NBA D;  4QDF B;  2NUK A;  2E76 D;  4QCK A;  4QUP A;  2FYU E;  1NTM E;  1KYO E;  1EG9 A;  2BMQ A;  2DE6 D;  3EQQ A;  4NBH D;  4QDD A;  2NVG A;  4HKV A;  1BCC E;  1G8J B;  2E4Q A;  2BMR A;  3GKE A;  1NU1 E;  1VM9 A;  2HMJ A;  1PPJ E;  3H1K E;  1SJG A;  4NBF D;  2DE7 D;  2JO6 A;  1UUW A;  4HM1 A;  3GTE A;  3GL0 A;  3GL2 A;  1ULJ A;  1NTK E;  1L0N E;  3H1H E;  4PV1 D;  1VF5 D;  1NTZ E;  4P1C H;  3GZY A;  4QDF A;  4H0L D;  4NBD D;  2DE5 D;  2BMO A;  3VCP A;  2NVF A;  2B1X A;  1WQL A;  4QUQ A;  4OGQ D;  3VCA A;  3CWB E;  3TGU E;  3H1L E;  5KKZ C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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