3VMID

Carbazole- and oxygen-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Terminal oxygenase component of carbazole
publication title Structural insight into the substrate- and dioxygenbinding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9adioxygenase
pubmed doi rcsb
source organism Janthinobacterium
total genus 18
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2011-12-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3vmiD00
1KB9E 4OGQD 5AEUA 1NU1E 2XR8A 3VCAA 3EQQA 2CKFA 3VMID 2HMLA 2HMKA 3GB4A 3VCPA 3GKEA 3GZYA 4HM2A 4QUPA 1G8JB 2YFIA 4NB9D 4QDDA 5KLIC 2E75D 2BMQA 2E74D 3TGUE 4HM3A 2YVJB 2D2CD 2NVGA 3L72E 1JM1A 4PD4E 2NWFA 4HM4A 2YIUC 1PPJE 4NBFD 2GBWA 2YFLA 3CXHE 3BCCE 4QCKA 1O7HA 4HM5A 2DE6D 4QURA 1SJGA 3L74E 2XSOA 3GOBA 2QJKC 1Q90C 1SQPE 3D89A 2IBZE 3GZXA 1BE3E 3CX5E 1P84E 2E4QA 1KYOE 2YFJA 2HMJA 1SQXE 2B1XA 1G8KB 5KLVE 2JZAA 4NBAD 3VMHD 1RFSA 4AAYB 5AEWA 2QJYC 1BCCE 2NUKA 2A06E 1EG9A 1RIEA 1O7GA 1O7MA 3H1HE 1ZRTE 1VF5D 4P1CH 4HM1A 2FYUE 5BOKA 3L70E 3CWBE 3C0DA 3L71E 2NVEA 2BMOA 2ZT9D 3EN1A 4HM8A 4H44D 2FYNC 4QDCA 4NBHD 1VM9A 2ZYLA 2JO6A 5CXMA 4NB8D 4AIVA 2HMMA 2NVFA 3GCEA 4H0LD 2XRXA 3VMGD 3FOUA 2Q3WA 1WQLA 4QDFB 4NBDD 4HM7A 3AZCA 3H1JE 2BMRA 2GBXA 1NDOA 4NBBD 1SQQE 2QJPC 1VCKA 2HMOA 2XSHA 3GTEA 4HJLA 1L0NE 1O7PA 4H13D 3GL2A 3H1LE 2I7FA 2NUMA 1NTME 1O7NA 1ULIA 3DQYA 5KKZC 2DE5D 4HM0A 1FQTA 3GTSA 1PP9E 4QUQA 4QDFA 2HMNA 4HKVA 2QPZA 1NTZE 1NTKE 4P1BH 1SQVE 1ULJA 1UUVA 3H1KE 4NBGD 2B24A 2DE7D 3L75E 1O7WA 1L0LE 1UUWA 4EMJB 4HM6A 4NBCD 4PV1D 5HL4A 3L73E 3H1IE 4NBED 2BCCE 4U3FE 2E4PA 2E76D 1NYKA 3N0QA 3GL0A 1EZVE 1SQBE
chains in the Genus database with same CATH superfamily
1KB9E 4OGQD 5AEUA 1NU1E 2XR8A 3VCAA 3EQQA 2CKFA 3VMID 2HMLA 2HMKA 3GB4A 3VCPA 3GKEA 3GZYA 4HM2A 4QUPA 1G8JB 2YFIA 4NB9D 4QDDA 5KLIC 2E75D 2BMQA 2E74D 3TGUE 4HM3A 2YVJB 2D2CD 2NVGA 3L72E 1JM1A 4PD4E 2NWFA 4HM4A 2YIUC 1PPJE 4NBFD 2GBWA 2YFLA 3CXHE 3BCCE 4QCKA 1O7HA 4HM5A 2DE6D 4QURA 1SJGA 3L74E 2XSOA 3GOBA 2QJKC 1Q90C 1SQPE 3D89A 2IBZE 3GZXA 1BE3E 3CX5E 1P84E 2E4QA 1KYOE 2YFJA 2HMJA 1SQXE 2B1XA 1G8KB 5KLVE 2JZAA 4NBAD 3VMHD 1RFSA 4AAYB 5AEWA 2QJYC 1BCCE 2NUKA 2A06E 1EG9A 1RIEA 1O7GA 1O7MA 3H1HE 1ZRTE 1VF5D 4P1CH 4HM1A 2FYUE 5BOKA 3L70E 3CWBE 3C0DA 3L71E 2NVEA 2BMOA 2ZT9D 3EN1A 4HM8A 4H44D 2FYNC 4QDCA 4NBHD 1VM9A 2ZYLA 2JO6A 5CXMA 4NB8D 4AIVA 2HMMA 2NVFA 3GCEA 4H0LD 2XRXA 3VMGD 3FOUA 2Q3WA 1WQLA 4QDFB 4NBDD 4HM7A 3AZCA 3H1JE 2BMRA 2GBXA 1NDOA 4NBBD 1SQQE 2QJPC 1VCKA 2HMOA 2XSHA 3GTEA 4HJLA 1L0NE 1O7PA 4H13D 3GL2A 3H1LE 2I7FA 2NUMA 1NTME 1O7NA 1ULIA 3DQYA 5KKZC 2DE5D 4HM0A 1FQTA 3GTSA 1PP9E 4QUQA 4QDFA 2HMNA 4HKVA 2QPZA 1NTZE 1NTKE 4P1BH 1SQVE 1ULJA 1UUVA 3H1KE 4NBGD 2B24A 2DE7D 3L75E 1O7WA 1L0LE 1UUWA 4EMJB 4HM6A 4NBCD 4PV1D 5HL4A 3L73E 3H1IE 4NBED 2BCCE 4U3FE 2E4PA 2E76D 1NYKA 3N0QA 3GL0A 1EZVE 1SQBE
chains in the Genus database with same CATH topology
1KB9E 4OGQD 5AEUA 1NU1E 2XR8A 3VCAA 3EQQA 2CKFA 3VMID 2HMLA 2HMKA 3GB4A 3VCPA 3GKEA 3GZYA 4HM2A 4QUPA 1G8JB 2YFIA 4NB9D 4QDDA 5KLIC 2E75D 2BMQA 2E74D 3TGUE 4HM3A 2YVJB 2D2CD 2NVGA 3L72E 1JM1A 4PD4E 2NWFA 4HM4A 2YIUC 1PPJE 4NBFD 2GBWA 2YFLA 3CXHE 3BCCE 4QCKA 1O7HA 4HM5A 2DE6D 4QURA 1SJGA 3L74E 2XSOA 3GOBA 2QJKC 1Q90C 1SQPE 3D89A 2IBZE 3GZXA 1BE3E 3CX5E 1P84E 2E4QA 1KYOE 2YFJA 2HMJA 1SQXE 2B1XA 1G8KB 5KLVE 2JZAA 4NBAD 3VMHD 1RFSA 4AAYB 5AEWA 2QJYC 1BCCE 2NUKA 2A06E 1EG9A 1RIEA 1O7GA 1O7MA 3H1HE 1ZRTE 1VF5D 4P1CH 4HM1A 2FYUE 5BOKA 3L70E 3CWBE 3C0DA 3L71E 2NVEA 2BMOA 2ZT9D 3EN1A 4HM8A 4H44D 2FYNC 4QDCA 4NBHD 1VM9A 2ZYLA 2JO6A 5CXMA 4NB8D 4AIVA 2HMMA 2NVFA 3GCEA 4H0LD 2XRXA 3VMGD 3FOUA 2Q3WA 1WQLA 4QDFB 4NBDD 4HM7A 3AZCA 3H1JE 2BMRA 2GBXA 1NDOA 4NBBD 1SQQE 2QJPC 1VCKA 2HMOA 2XSHA 3GTEA 4HJLA 1L0NE 1O7PA 4H13D 3GL2A 3H1LE 2I7FA 2NUMA 1NTME 1O7NA 1ULIA 3DQYA 5KKZC 2DE5D 4HM0A 1FQTA 3GTSA 1PP9E 4QUQA 4QDFA 2HMNA 4HKVA 2QPZA 1NTZE 1NTKE 4P1BH 1SQVE 1ULJA 1UUVA 3H1KE 4NBGD 2B24A 2DE7D 3L75E 1O7WA 1L0LE 1UUWA 4EMJB 4HM6A 4NBCD 4PV1D 5HL4A 3L73E 3H1IE 4NBED 2BCCE 4U3FE 2E4PA 2E76D 1NYKA 3N0QA 3GL0A 1EZVE 1SQBE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KB9 E;  4OGQ D;  5AEU A;  1NU1 E;  2XR8 A;  3VCA A;  3EQQ A;  2CKF A;  3VMI D;  2HML A;  2HMK A;  3GB4 A;  3VCP A;  3GKE A;  3GZY A;  4HM2 A;  4QUP A;  1G8J B;  2YFI A;  4NB9 D;  4QDD A;  5KLI C;  2E75 D;  2BMQ A;  2E74 D;  3TGU E;  4HM3 A;  2YVJ B;  2D2C D;  2NVG A;  3L72 E;  1JM1 A;  4PD4 E;  2NWF A;  4HM4 A;  2YIU C;  1PPJ E;  4NBF D;  2GBW A;  2YFL A;  3CXH E;  3BCC E;  4QCK A;  1O7H A;  4HM5 A;  2DE6 D;  4QUR A;  1SJG A;  3L74 E;  2XSO A;  3GOB A;  2QJK C;  1Q90 C;  1SQP E;  3D89 A;  2IBZ E;  3GZX A;  1BE3 E;  3CX5 E;  1P84 E;  2E4Q A;  1KYO E;  2YFJ A;  2HMJ A;  1SQX E;  2B1X A;  1G8K B;  5KLV E;  2JZA A;  4NBA D;  3VMH D;  1RFS A;  4AAY B;  5AEW A;  2QJY C;  1BCC E;  2NUK A;  2A06 E;  1EG9 A;  1RIE A;  1O7G A;  1O7M A;  3H1H E;  1ZRT E;  1VF5 D;  4P1C H;  4HM1 A;  2FYU E;  5BOK A;  3L70 E;  3CWB E;  3C0D A;  3L71 E;  2NVE A;  2BMO A;  2ZT9 D;  3EN1 A;  4HM8 A;  4H44 D;  2FYN C;  4QDC A;  4NBH D;  1VM9 A;  2ZYL A;  2JO6 A;  5CXM A;  4NB8 D;  4AIV A;  2HMM A;  2NVF A;  3GCE A;  4H0L D;  2XRX A;  3VMG D;  3FOU A;  2Q3W A;  1WQL A;  4QDF B;  4NBD D;  4HM7 A;  3AZC A;  3H1J E;  2BMR A;  2GBX A;  1NDO A;  4NBB D;  1SQQ E;  2QJP C;  1VCK A;  2HMO A;  2XSH A;  3GTE A;  4HJL A;  1L0N E;  1O7P A;  4H13 D;  3GL2 A;  3H1L E;  2I7F A;  2NUM A;  1NTM E;  1O7N A;  1ULI A;  3DQY A;  5KKZ C;  2DE5 D;  4HM0 A;  1FQT A;  3GTS A;  1PP9 E;  4QUQ A;  4QDF A;  2HMN A;  4HKV A;  2QPZ A;  1NTZ E;  1NTK E;  4P1B H;  1SQV E;  1ULJ A;  1UUV A;  3H1K E;  4NBG D;  2B24 A;  2DE7 D;  3L75 E;  1O7W A;  1L0L E;  1UUW A;  4EMJ B;  4HM6 A;  4NBC D;  4PV1 D;  5HL4 A;  3L73 E;  3H1I E;  4NBE D;  2BCC E;  4U3F E;  2E4P A;  2E76 D;  1NYK A;  3N0Q A;  3GL0 A;  1EZV E;  1SQB E; 
#chains in the Genus database with same CATH topology
 1KB9 E;  4OGQ D;  5AEU A;  1NU1 E;  2XR8 A;  3VCA A;  3EQQ A;  2CKF A;  3VMI D;  2HML A;  2HMK A;  3GB4 A;  3VCP A;  3GKE A;  3GZY A;  4HM2 A;  4QUP A;  1G8J B;  2YFI A;  4NB9 D;  4QDD A;  5KLI C;  2E75 D;  2BMQ A;  2E74 D;  3TGU E;  4HM3 A;  2YVJ B;  2D2C D;  2NVG A;  3L72 E;  1JM1 A;  4PD4 E;  2NWF A;  4HM4 A;  2YIU C;  1PPJ E;  4NBF D;  2GBW A;  2YFL A;  3CXH E;  3BCC E;  4QCK A;  1O7H A;  4HM5 A;  2DE6 D;  4QUR A;  1SJG A;  3L74 E;  2XSO A;  3GOB A;  2QJK C;  1Q90 C;  1SQP E;  3D89 A;  2IBZ E;  3GZX A;  1BE3 E;  3CX5 E;  1P84 E;  2E4Q A;  1KYO E;  2YFJ A;  2HMJ A;  1SQX E;  2B1X A;  1G8K B;  5KLV E;  2JZA A;  4NBA D;  3VMH D;  1RFS A;  4AAY B;  5AEW A;  2QJY C;  1BCC E;  2NUK A;  2A06 E;  1EG9 A;  1RIE A;  1O7G A;  1O7M A;  3H1H E;  1ZRT E;  1VF5 D;  4P1C H;  4HM1 A;  2FYU E;  5BOK A;  3L70 E;  3CWB E;  3C0D A;  3L71 E;  2NVE A;  2BMO A;  2ZT9 D;  3EN1 A;  4HM8 A;  4H44 D;  2FYN C;  4QDC A;  4NBH D;  1VM9 A;  2ZYL A;  2JO6 A;  5CXM A;  4NB8 D;  4AIV A;  2HMM A;  2NVF A;  3GCE A;  4H0L D;  2XRX A;  3VMG D;  3FOU A;  2Q3W A;  1WQL A;  4QDF B;  4NBD D;  4HM7 A;  3AZC A;  3H1J E;  2BMR A;  2GBX A;  1NDO A;  4NBB D;  1SQQ E;  2QJP C;  1VCK A;  2HMO A;  2XSH A;  3GTE A;  4HJL A;  1L0N E;  1O7P A;  4H13 D;  3GL2 A;  3H1L E;  2I7F A;  2NUM A;  1NTM E;  1O7N A;  1ULI A;  3DQY A;  5KKZ C;  2DE5 D;  4HM0 A;  1FQT A;  3GTS A;  1PP9 E;  4QUQ A;  4QDF A;  2HMN A;  4HKV A;  2QPZ A;  1NTZ E;  1NTK E;  4P1B H;  1SQV E;  1ULJ A;  1UUV A;  3H1K E;  4NBG D;  2B24 A;  2DE7 D;  3L75 E;  1O7W A;  1L0L E;  1UUW A;  4EMJ B;  4HM6 A;  4NBC D;  4PV1 D;  5HL4 A;  3L73 E;  3H1I E;  4NBE D;  2BCC E;  4U3F E;  2E4P A;  2E76 D;  1NYK A;  3N0Q A;  3GL0 A;  1EZV E;  1SQB E; 
#chains in the Genus database with same CATH homology
 1KB9 E;  4OGQ D;  5AEU A;  1NU1 E;  2XR8 A;  3VCA A;  3EQQ A;  2CKF A;  3VMI D;  2HML A;  2HMK A;  3GB4 A;  3VCP A;  3GKE A;  3GZY A;  4HM2 A;  4QUP A;  1G8J B;  2YFI A;  4NB9 D;  4QDD A;  5KLI C;  2E75 D;  2BMQ A;  2E74 D;  3TGU E;  4HM3 A;  2YVJ B;  2D2C D;  2NVG A;  3L72 E;  1JM1 A;  4PD4 E;  2NWF A;  4HM4 A;  2YIU C;  1PPJ E;  4NBF D;  2GBW A;  2YFL A;  3CXH E;  3BCC E;  4QCK A;  1O7H A;  4HM5 A;  2DE6 D;  4QUR A;  1SJG A;  3L74 E;  2XSO A;  3GOB A;  2QJK C;  1Q90 C;  1SQP E;  3D89 A;  2IBZ E;  3GZX A;  1BE3 E;  3CX5 E;  1P84 E;  2E4Q A;  1KYO E;  2YFJ A;  2HMJ A;  1SQX E;  2B1X A;  1G8K B;  5KLV E;  2JZA A;  4NBA D;  3VMH D;  1RFS A;  4AAY B;  5AEW A;  2QJY C;  1BCC E;  2NUK A;  2A06 E;  1EG9 A;  1RIE A;  1O7G A;  1O7M A;  3H1H E;  1ZRT E;  1VF5 D;  4P1C H;  4HM1 A;  2FYU E;  5BOK A;  3L70 E;  3CWB E;  3C0D A;  3L71 E;  2NVE A;  2BMO A;  2ZT9 D;  3EN1 A;  4HM8 A;  4H44 D;  2FYN C;  4QDC A;  4NBH D;  1VM9 A;  2ZYL A;  2JO6 A;  5CXM A;  4NB8 D;  4AIV A;  2HMM A;  2NVF A;  3GCE A;  4H0L D;  2XRX A;  3VMG D;  3FOU A;  2Q3W A;  1WQL A;  4QDF B;  4NBD D;  4HM7 A;  3AZC A;  3H1J E;  2BMR A;  2GBX A;  1NDO A;  4NBB D;  1SQQ E;  2QJP C;  1VCK A;  2HMO A;  2XSH A;  3GTE A;  4HJL A;  1L0N E;  1O7P A;  4H13 D;  3GL2 A;  3H1L E;  2I7F A;  2NUM A;  1NTM E;  1O7N A;  1ULI A;  3DQY A;  5KKZ C;  2DE5 D;  4HM0 A;  1FQT A;  3GTS A;  1PP9 E;  4QUQ A;  4QDF A;  2HMN A;  4HKV A;  2QPZ A;  1NTZ E;  1NTK E;  4P1B H;  1SQV E;  1ULJ A;  1UUV A;  3H1K E;  4NBG D;  2B24 A;  2DE7 D;  3L75 E;  1O7W A;  1L0L E;  1UUW A;  4EMJ B;  4HM6 A;  4NBC D;  4PV1 D;  5HL4 A;  3L73 E;  3H1I E;  4NBE D;  2BCC E;  4U3F E;  2E4P A;  2E76 D;  1NYK A;  3N0Q A;  3GL0 A;  1EZV E;  1SQB E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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