2JO6A

Nmr structure of the e.coli protein nird, northeast structural genomics target et100
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
110
structure length
110
Chain Sequence
MSQWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYEARVKDGVVQLRGGS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Nitrite reductase [NAD(P)H] small subunit
publication title NMR structure of E.coli NirD.
rcsb
source organism Escherichia coli
total genus 19
structure length 110
sequence length 110
ec nomenclature ec 1.7.1.15: Nitrite reductase (NADH).
pdb deposition date 2007-02-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13806 Rieske_2 Rieske-like [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2jo6A00
2YFLA 2GBWA 1EZVE 2YFIA 1UUWA 2D2CD 4HJLA 1NU1E 3H1IE 3L70E 1O7MA 4HM7A 4AAYB 3AZCA 3EN1A 4OGQD 4NBDD 4QUPA 3GL2A 1SQXE 4HM5A 2YIUC 4PD4E 5CXMA 2NVEA 2DE5D 2B1XA 2E4PA 4NB9D 3GTEA 2XSHA 1Q90C 3GTSA 3L71E 1NYKA 4QUQA 1SQVE 1L0LE 2NVFA 2CKFA 3GZYA 3D89A 1EG9A 4NBBD 4P1BH 1FQTA 2E4QA 2HMMA 2NUKA 4PV1D 1SQQE 4NBFD 2QJYC 1O7HA 3L74E 1RFSA 4HM0A 1WQLA 4U3FE 1BE3E 3CX5E 3L75E 2JO6A 1KB9E 4P1CH 4QDCA 2BMRA 2HMJA 1KYOE 3N0QA 2HMLA 3CWBE 3L73E 1L0NE 1P84E 1VCKA 5AEUA 1UUVA 2QJPC 3VCPA 2BMQA 2DE6D 3GB4A 2QPZA 4NBAD 2JZAA 2E74D 2E76D 2HMKA 2HMOA 4NBCD 2YFJA 2B24A 4NBED 2DE7D 2NUMA 2HMNA 5KLIC 1NTKE 1NDOA 3GCEA 5BOKA 1O7WA 4QDFB 2XSOA 2ZYLA 5KLVE 4H44D 3H1JE 1JM1A 3GL0A 3GOBA 1O7GA 3H1HE 3VCAA 2ZT9D 4HM6A 4AIVA 4NBHD 2BMOA 1ULJA 5KKZC 1RIEA 1ULIA 4QCKA 3L72E 4QDFA 3TGUE 2YVJB 3EQQA 4HM8A 1VF5D 3VMGD 1PP9E 3VMHD 1PPJE 4NB8D 4H13D 2FYUE 1ZRTE 4QDDA 4EMJB 1NTME 2I7FA 1SQPE 2Q3WA 3FOUA 1SJGA 5AEWA 1O7NA 4H0LD 3H1LE 2E75D 1O7PA 1BCCE 3DQYA 2QJKC 5HL4A 4HM4A 1NTZE 4HKVA 2IBZE 1G8JB 1VM9A 2FYNC 3BCCE 3GKEA 2XR8A 3H1KE 4NBGD 2BCCE 2GBXA 1G8KB 1SQBE 3CXHE 2NWFA 3C0DA 4HM2A 4HM1A 4HM3A 2XRXA 3GZXA 2NVGA 4QURA 3VMID 2A06E
chains in the Genus database with same CATH superfamily
2YFLA 2GBWA 1EZVE 2YFIA 1UUWA 2D2CD 4HJLA 1NU1E 3H1IE 3L70E 1O7MA 4HM7A 4AAYB 3AZCA 3EN1A 4OGQD 4NBDD 4QUPA 3GL2A 1SQXE 4HM5A 2YIUC 4PD4E 5CXMA 2NVEA 2DE5D 2B1XA 2E4PA 4NB9D 3GTEA 2XSHA 1Q90C 3GTSA 3L71E 1NYKA 4QUQA 1SQVE 1L0LE 2NVFA 2CKFA 3GZYA 3D89A 1EG9A 4NBBD 4P1BH 1FQTA 2E4QA 2HMMA 2NUKA 4PV1D 1SQQE 4NBFD 2QJYC 1O7HA 3L74E 1RFSA 4HM0A 1WQLA 4U3FE 1BE3E 3CX5E 3L75E 2JO6A 1KB9E 4P1CH 4QDCA 2BMRA 2HMJA 1KYOE 3N0QA 2HMLA 3CWBE 3L73E 1L0NE 1P84E 1VCKA 5AEUA 1UUVA 2QJPC 3VCPA 2BMQA 2DE6D 3GB4A 2QPZA 4NBAD 2JZAA 2E74D 2E76D 2HMKA 2HMOA 4NBCD 2YFJA 2B24A 4NBED 2DE7D 2NUMA 2HMNA 5KLIC 1NTKE 1NDOA 3GCEA 5BOKA 1O7WA 4QDFB 2XSOA 2ZYLA 5KLVE 4H44D 3H1JE 1JM1A 3GL0A 3GOBA 1O7GA 3H1HE 3VCAA 2ZT9D 4HM6A 4AIVA 4NBHD 2BMOA 1ULJA 5KKZC 1RIEA 1ULIA 4QCKA 3L72E 4QDFA 3TGUE 2YVJB 3EQQA 4HM8A 1VF5D 3VMGD 1PP9E 3VMHD 1PPJE 4NB8D 4H13D 2FYUE 1ZRTE 4QDDA 4EMJB 1NTME 2I7FA 1SQPE 2Q3WA 3FOUA 1SJGA 5AEWA 1O7NA 4H0LD 3H1LE 2E75D 1O7PA 1BCCE 3DQYA 2QJKC 5HL4A 4HM4A 1NTZE 4HKVA 2IBZE 1G8JB 1VM9A 2FYNC 3BCCE 3GKEA 2XR8A 3H1KE 4NBGD 2BCCE 2GBXA 1G8KB 1SQBE 3CXHE 2NWFA 3C0DA 4HM2A 4HM1A 4HM3A 2XRXA 3GZXA 2NVGA 4QURA 3VMID 2A06E
chains in the Genus database with same CATH topology
2YFLA 2GBWA 1EZVE 2YFIA 1UUWA 2D2CD 4HJLA 1NU1E 3H1IE 3L70E 1O7MA 4HM7A 4AAYB 3AZCA 3EN1A 4OGQD 4NBDD 4QUPA 3GL2A 1SQXE 4HM5A 2YIUC 4PD4E 5CXMA 2NVEA 2DE5D 2B1XA 2E4PA 4NB9D 3GTEA 2XSHA 1Q90C 3GTSA 3L71E 1NYKA 4QUQA 1SQVE 1L0LE 2NVFA 2CKFA 3GZYA 3D89A 1EG9A 4NBBD 4P1BH 1FQTA 2E4QA 2HMMA 2NUKA 4PV1D 1SQQE 4NBFD 2QJYC 1O7HA 3L74E 1RFSA 4HM0A 1WQLA 4U3FE 1BE3E 3CX5E 3L75E 2JO6A 1KB9E 4P1CH 4QDCA 2BMRA 2HMJA 1KYOE 3N0QA 2HMLA 3CWBE 3L73E 1L0NE 1P84E 1VCKA 5AEUA 1UUVA 2QJPC 3VCPA 2BMQA 2DE6D 3GB4A 2QPZA 4NBAD 2JZAA 2E74D 2E76D 2HMKA 2HMOA 4NBCD 2YFJA 2B24A 4NBED 2DE7D 2NUMA 2HMNA 5KLIC 1NTKE 1NDOA 3GCEA 5BOKA 1O7WA 4QDFB 2XSOA 2ZYLA 5KLVE 4H44D 3H1JE 1JM1A 3GL0A 3GOBA 1O7GA 3H1HE 3VCAA 2ZT9D 4HM6A 4AIVA 4NBHD 2BMOA 1ULJA 5KKZC 1RIEA 1ULIA 4QCKA 3L72E 4QDFA 3TGUE 2YVJB 3EQQA 4HM8A 1VF5D 3VMGD 1PP9E 3VMHD 1PPJE 4NB8D 4H13D 2FYUE 1ZRTE 4QDDA 4EMJB 1NTME 2I7FA 1SQPE 2Q3WA 3FOUA 1SJGA 5AEWA 1O7NA 4H0LD 3H1LE 2E75D 1O7PA 1BCCE 3DQYA 2QJKC 5HL4A 4HM4A 1NTZE 4HKVA 2IBZE 1G8JB 1VM9A 2FYNC 3BCCE 3GKEA 2XR8A 3H1KE 4NBGD 2BCCE 2GBXA 1G8KB 1SQBE 3CXHE 2NWFA 3C0DA 4HM2A 4HM1A 4HM3A 2XRXA 3GZXA 2NVGA 4QURA 3VMID 2A06E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YFL A;  2GBW A;  1EZV E;  2YFI A;  1UUW A;  2D2C D;  4HJL A;  1NU1 E;  3H1I E;  3L70 E;  1O7M A;  4HM7 A;  4AAY B;  3AZC A;  3EN1 A;  4OGQ D;  4NBD D;  4QUP A;  3GL2 A;  1SQX E;  4HM5 A;  2YIU C;  4PD4 E;  5CXM A;  2NVE A;  2DE5 D;  2B1X A;  2E4P A;  4NB9 D;  3GTE A;  2XSH A;  1Q90 C;  3GTS A;  3L71 E;  1NYK A;  4QUQ A;  1SQV E;  1L0L E;  2NVF A;  2CKF A;  3GZY A;  3D89 A;  1EG9 A;  4NBB D;  4P1B H;  1FQT A;  2E4Q A;  2HMM A;  2NUK A;  4PV1 D;  1SQQ E;  4NBF D;  2QJY C;  1O7H A;  3L74 E;  1RFS A;  4HM0 A;  1WQL A;  4U3F E;  1BE3 E;  3CX5 E;  3L75 E;  2JO6 A;  1KB9 E;  4P1C H;  4QDC A;  2BMR A;  2HMJ A;  1KYO E;  3N0Q A;  2HML A;  3CWB E;  3L73 E;  1L0N E;  1P84 E;  1VCK A;  5AEU A;  1UUV A;  2QJP C;  3VCP A;  2BMQ A;  2DE6 D;  3GB4 A;  2QPZ A;  4NBA D;  2JZA A;  2E74 D;  2E76 D;  2HMK A;  2HMO A;  4NBC D;  2YFJ A;  2B24 A;  4NBE D;  2DE7 D;  2NUM A;  2HMN A;  5KLI C;  1NTK E;  1NDO A;  3GCE A;  5BOK A;  1O7W A;  4QDF B;  2XSO A;  2ZYL A;  5KLV E;  4H44 D;  3H1J E;  1JM1 A;  3GL0 A;  3GOB A;  1O7G A;  3H1H E;  3VCA A;  2ZT9 D;  4HM6 A;  4AIV A;  4NBH D;  2BMO A;  1ULJ A;  5KKZ C;  1RIE A;  1ULI A;  4QCK A;  3L72 E;  4QDF A;  3TGU E;  2YVJ B;  3EQQ A;  4HM8 A;  1VF5 D;  3VMG D;  1PP9 E;  3VMH D;  1PPJ E;  4NB8 D;  4H13 D;  2FYU E;  1ZRT E;  4QDD A;  4EMJ B;  1NTM E;  2I7F A;  1SQP E;  2Q3W A;  3FOU A;  1SJG A;  5AEW A;  1O7N A;  4H0L D;  3H1L E;  2E75 D;  1O7P A;  1BCC E;  3DQY A;  2QJK C;  5HL4 A;  4HM4 A;  1NTZ E;  4HKV A;  2IBZ E;  1G8J B;  1VM9 A;  2FYN C;  3BCC E;  3GKE A;  2XR8 A;  3H1K E;  4NBG D;  2BCC E;  2GBX A;  1G8K B;  1SQB E;  3CXH E;  2NWF A;  3C0D A;  4HM2 A;  4HM1 A;  4HM3 A;  2XRX A;  3GZX A;  2NVG A;  4QUR A;  3VMI D;  2A06 E; 
#chains in the Genus database with same CATH topology
 2YFL A;  2GBW A;  1EZV E;  2YFI A;  1UUW A;  2D2C D;  4HJL A;  1NU1 E;  3H1I E;  3L70 E;  1O7M A;  4HM7 A;  4AAY B;  3AZC A;  3EN1 A;  4OGQ D;  4NBD D;  4QUP A;  3GL2 A;  1SQX E;  4HM5 A;  2YIU C;  4PD4 E;  5CXM A;  2NVE A;  2DE5 D;  2B1X A;  2E4P A;  4NB9 D;  3GTE A;  2XSH A;  1Q90 C;  3GTS A;  3L71 E;  1NYK A;  4QUQ A;  1SQV E;  1L0L E;  2NVF A;  2CKF A;  3GZY A;  3D89 A;  1EG9 A;  4NBB D;  4P1B H;  1FQT A;  2E4Q A;  2HMM A;  2NUK A;  4PV1 D;  1SQQ E;  4NBF D;  2QJY C;  1O7H A;  3L74 E;  1RFS A;  4HM0 A;  1WQL A;  4U3F E;  1BE3 E;  3CX5 E;  3L75 E;  2JO6 A;  1KB9 E;  4P1C H;  4QDC A;  2BMR A;  2HMJ A;  1KYO E;  3N0Q A;  2HML A;  3CWB E;  3L73 E;  1L0N E;  1P84 E;  1VCK A;  5AEU A;  1UUV A;  2QJP C;  3VCP A;  2BMQ A;  2DE6 D;  3GB4 A;  2QPZ A;  4NBA D;  2JZA A;  2E74 D;  2E76 D;  2HMK A;  2HMO A;  4NBC D;  2YFJ A;  2B24 A;  4NBE D;  2DE7 D;  2NUM A;  2HMN A;  5KLI C;  1NTK E;  1NDO A;  3GCE A;  5BOK A;  1O7W A;  4QDF B;  2XSO A;  2ZYL A;  5KLV E;  4H44 D;  3H1J E;  1JM1 A;  3GL0 A;  3GOB A;  1O7G A;  3H1H E;  3VCA A;  2ZT9 D;  4HM6 A;  4AIV A;  4NBH D;  2BMO A;  1ULJ A;  5KKZ C;  1RIE A;  1ULI A;  4QCK A;  3L72 E;  4QDF A;  3TGU E;  2YVJ B;  3EQQ A;  4HM8 A;  1VF5 D;  3VMG D;  1PP9 E;  3VMH D;  1PPJ E;  4NB8 D;  4H13 D;  2FYU E;  1ZRT E;  4QDD A;  4EMJ B;  1NTM E;  2I7F A;  1SQP E;  2Q3W A;  3FOU A;  1SJG A;  5AEW A;  1O7N A;  4H0L D;  3H1L E;  2E75 D;  1O7P A;  1BCC E;  3DQY A;  2QJK C;  5HL4 A;  4HM4 A;  1NTZ E;  4HKV A;  2IBZ E;  1G8J B;  1VM9 A;  2FYN C;  3BCC E;  3GKE A;  2XR8 A;  3H1K E;  4NBG D;  2BCC E;  2GBX A;  1G8K B;  1SQB E;  3CXH E;  2NWF A;  3C0D A;  4HM2 A;  4HM1 A;  4HM3 A;  2XRX A;  3GZX A;  2NVG A;  4QUR A;  3VMI D;  2A06 E; 
#chains in the Genus database with same CATH homology
 2YFL A;  2GBW A;  1EZV E;  2YFI A;  1UUW A;  2D2C D;  4HJL A;  1NU1 E;  3H1I E;  3L70 E;  1O7M A;  4HM7 A;  4AAY B;  3AZC A;  3EN1 A;  4OGQ D;  4NBD D;  4QUP A;  3GL2 A;  1SQX E;  4HM5 A;  2YIU C;  4PD4 E;  5CXM A;  2NVE A;  2DE5 D;  2B1X A;  2E4P A;  4NB9 D;  3GTE A;  2XSH A;  1Q90 C;  3GTS A;  3L71 E;  1NYK A;  4QUQ A;  1SQV E;  1L0L E;  2NVF A;  2CKF A;  3GZY A;  3D89 A;  1EG9 A;  4NBB D;  4P1B H;  1FQT A;  2E4Q A;  2HMM A;  2NUK A;  4PV1 D;  1SQQ E;  4NBF D;  2QJY C;  1O7H A;  3L74 E;  1RFS A;  4HM0 A;  1WQL A;  4U3F E;  1BE3 E;  3CX5 E;  3L75 E;  2JO6 A;  1KB9 E;  4P1C H;  4QDC A;  2BMR A;  2HMJ A;  1KYO E;  3N0Q A;  2HML A;  3CWB E;  3L73 E;  1L0N E;  1P84 E;  1VCK A;  5AEU A;  1UUV A;  2QJP C;  3VCP A;  2BMQ A;  2DE6 D;  3GB4 A;  2QPZ A;  4NBA D;  2JZA A;  2E74 D;  2E76 D;  2HMK A;  2HMO A;  4NBC D;  2YFJ A;  2B24 A;  4NBE D;  2DE7 D;  2NUM A;  2HMN A;  5KLI C;  1NTK E;  1NDO A;  3GCE A;  5BOK A;  1O7W A;  4QDF B;  2XSO A;  2ZYL A;  5KLV E;  4H44 D;  3H1J E;  1JM1 A;  3GL0 A;  3GOB A;  1O7G A;  3H1H E;  3VCA A;  2ZT9 D;  4HM6 A;  4AIV A;  4NBH D;  2BMO A;  1ULJ A;  5KKZ C;  1RIE A;  1ULI A;  4QCK A;  3L72 E;  4QDF A;  3TGU E;  2YVJ B;  3EQQ A;  4HM8 A;  1VF5 D;  3VMG D;  1PP9 E;  3VMH D;  1PPJ E;  4NB8 D;  4H13 D;  2FYU E;  1ZRT E;  4QDD A;  4EMJ B;  1NTM E;  2I7F A;  1SQP E;  2Q3W A;  3FOU A;  1SJG A;  5AEW A;  1O7N A;  4H0L D;  3H1L E;  2E75 D;  1O7P A;  1BCC E;  3DQY A;  2QJK C;  5HL4 A;  4HM4 A;  1NTZ E;  4HKV A;  2IBZ E;  1G8J B;  1VM9 A;  2FYN C;  3BCC E;  3GKE A;  2XR8 A;  3H1K E;  4NBG D;  2BCC E;  2GBX A;  1G8K B;  1SQB E;  3CXH E;  2NWF A;  3C0D A;  4HM2 A;  4HM1 A;  4HM3 A;  2XRX A;  3GZX A;  2NVG A;  4QUR A;  3VMI D;  2A06 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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