2JO6A

Nmr structure of the e.coli protein nird, northeast structural genomics target et100
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
110
structure length
110
Chain Sequence
MSQWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYEARVKDGVVQLRGGS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Nitrite reductase [NAD(P)H] small subunit
publication title NMR structure of E.coli NirD.
rcsb
source organism Escherichia coli
molecule tags Oxidoreductase
total genus 19
structure length 110
sequence length 110
ec nomenclature ec 1.7.1.15: Nitrite reductase (NADH).
pdb deposition date 2007-02-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13806 Rieske_2 Rieske-like [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2jo6A00
4HM3A 1NYKA 5KLVE 2JZAA 2FYNC 4PV1D 3GZXA 2HMLA 3DQYA 2NVFA 1BCCE 1KB9E 1VF5D 3CXHE 2HMJA 4H13D 5HL4A 1SJGA 1NTKE 5AEUA 4NBHD 1SQPE 2A06E 2GBWA 3GZYA 3VMID 3CWBE 4P1BH 4HJLA 2HMKA 4AIVA 2NVGA 3FOUA 2QJPC 4HM2A 2Q3WA 1SQBE 4P1CH 3L73E 2E76D 1O7GA 4HM0A 2YFLA 2QJKC 1NTME 3L74E 4HKVA 4NBED 1NTZE 1L0LE 2D2CD 1NDOA 2HMMA 2XRXA 3GL2A 1SQXE 2JO6A 1L0NE 4QDCA 4AAYB 2XSOA 4EMJB 4NBDD 2NUMA 1FQTA 2XR8A 3L75E 4H44D 3D89A 1PP9E 4U3FE 2YVJB 1G8KB 3GB4A 2HMOA 2E75D 2I7FA 1O7HA 2E4QA 2CKFA 1JM1A 3GKEA 2DE5D 3AZCA 2HMNA 1O7WA 2YFJA 4HM4A 3GOBA 3H1IE 2B24A 4NB9D 4NBCD 1O7PA 3L71E 5CXMA 1KYOE 4NB8D 2BMOA 4HM8A 4QUPA 2BCCE 1UUWA 1G8JB 2BMQA 4NBGD 1NU1E 1RIEA 3C0DA 1ULJA 2YFIA 3H1JE 5AEWA 1BE3E 4NBFD 3GL0A 3VMHD 3N0QA 1EZVE 4NBAD 1O7NA 1UUVA 1Q90C 1PPJE 4QUQA 2DE6D 3CX5E 3VCPA 2DE7D 3GTEA 2E4PA 4HM5A 3H1LE 2ZT9D 4PD4E 5BOKA 3TGUE 4QURA 5KKZC 2NUKA 1ZRTE 4HM6A 1EG9A 2XSHA 1O7MA 1VCKA 1P84E 3VCAA 1WQLA 4NBBD 4QDFB 3L72E 4HM1A 4QDFA 3H1HE 5KLIC 1ULIA 4QDDA 2ZYLA 2BMRA 1VM9A 4OGQD 2YIUC 1SQVE 2E74D 3GTSA 1SQQE 3GCEA 3H1KE 4HM7A 2IBZE 2QPZA 2NVEA 3EN1A 4QCKA 3EQQA 1RFSA 4H0LD 3L70E 2QJYC 2GBXA 3BCCE 2NWFA 2FYUE 2B1XA 3VMGD
chains in the Genus database with same CATH superfamily
4HM3A 1NYKA 5KLVE 2JZAA 2FYNC 4PV1D 3GZXA 2HMLA 3DQYA 2NVFA 1BCCE 1KB9E 1VF5D 3CXHE 2HMJA 4H13D 5HL4A 1SJGA 1NTKE 5AEUA 4NBHD 1SQPE 2A06E 2GBWA 3GZYA 3VMID 3CWBE 4P1BH 4HJLA 2HMKA 4AIVA 2NVGA 3FOUA 2QJPC 4HM2A 2Q3WA 1SQBE 4P1CH 3L73E 2E76D 1O7GA 4HM0A 2YFLA 2QJKC 1NTME 3L74E 4HKVA 4NBED 1NTZE 1L0LE 2D2CD 1NDOA 2HMMA 2XRXA 3GL2A 1SQXE 2JO6A 1L0NE 4QDCA 4AAYB 2XSOA 4EMJB 4NBDD 2NUMA 1FQTA 2XR8A 3L75E 4H44D 3D89A 1PP9E 4U3FE 2YVJB 1G8KB 3GB4A 2HMOA 2E75D 2I7FA 1O7HA 2E4QA 2CKFA 1JM1A 3GKEA 2DE5D 3AZCA 2HMNA 1O7WA 2YFJA 4HM4A 3GOBA 3H1IE 2B24A 4NB9D 4NBCD 1O7PA 3L71E 5CXMA 1KYOE 4NB8D 2BMOA 4HM8A 4QUPA 2BCCE 1UUWA 1G8JB 2BMQA 4NBGD 1NU1E 1RIEA 3C0DA 1ULJA 2YFIA 3H1JE 5AEWA 1BE3E 4NBFD 3GL0A 3VMHD 3N0QA 1EZVE 4NBAD 1O7NA 1UUVA 1Q90C 1PPJE 4QUQA 2DE6D 3CX5E 3VCPA 2DE7D 3GTEA 2E4PA 4HM5A 3H1LE 2ZT9D 4PD4E 5BOKA 3TGUE 4QURA 5KKZC 2NUKA 1ZRTE 4HM6A 1EG9A 2XSHA 1O7MA 1VCKA 1P84E 3VCAA 1WQLA 4NBBD 4QDFB 3L72E 4HM1A 4QDFA 3H1HE 5KLIC 1ULIA 4QDDA 2ZYLA 2BMRA 1VM9A 4OGQD 2YIUC 1SQVE 2E74D 3GTSA 1SQQE 3GCEA 3H1KE 4HM7A 2IBZE 2QPZA 2NVEA 3EN1A 4QCKA 3EQQA 1RFSA 4H0LD 3L70E 2QJYC 2GBXA 3BCCE 2NWFA 2FYUE 2B1XA 3VMGD
chains in the Genus database with same CATH topology
4HM3A 1NYKA 5KLVE 2JZAA 2FYNC 4PV1D 3GZXA 2HMLA 3DQYA 2NVFA 1BCCE 1KB9E 1VF5D 3CXHE 2HMJA 4H13D 5HL4A 1SJGA 1NTKE 5AEUA 4NBHD 1SQPE 2A06E 2GBWA 3GZYA 3VMID 3CWBE 4P1BH 4HJLA 2HMKA 4AIVA 2NVGA 3FOUA 2QJPC 4HM2A 2Q3WA 1SQBE 4P1CH 3L73E 2E76D 1O7GA 4HM0A 2YFLA 2QJKC 1NTME 3L74E 4HKVA 4NBED 1NTZE 1L0LE 2D2CD 1NDOA 2HMMA 2XRXA 3GL2A 1SQXE 2JO6A 1L0NE 4QDCA 4AAYB 2XSOA 4EMJB 4NBDD 2NUMA 1FQTA 2XR8A 3L75E 4H44D 3D89A 1PP9E 4U3FE 2YVJB 1G8KB 3GB4A 2HMOA 2E75D 2I7FA 1O7HA 2E4QA 2CKFA 1JM1A 3GKEA 2DE5D 3AZCA 2HMNA 1O7WA 2YFJA 4HM4A 3GOBA 3H1IE 2B24A 4NB9D 4NBCD 1O7PA 3L71E 5CXMA 1KYOE 4NB8D 2BMOA 4HM8A 4QUPA 2BCCE 1UUWA 1G8JB 2BMQA 4NBGD 1NU1E 1RIEA 3C0DA 1ULJA 2YFIA 3H1JE 5AEWA 1BE3E 4NBFD 3GL0A 3VMHD 3N0QA 1EZVE 4NBAD 1O7NA 1UUVA 1Q90C 1PPJE 4QUQA 2DE6D 3CX5E 3VCPA 2DE7D 3GTEA 2E4PA 4HM5A 3H1LE 2ZT9D 4PD4E 5BOKA 3TGUE 4QURA 5KKZC 2NUKA 1ZRTE 4HM6A 1EG9A 2XSHA 1O7MA 1VCKA 1P84E 3VCAA 1WQLA 4NBBD 4QDFB 3L72E 4HM1A 4QDFA 3H1HE 5KLIC 1ULIA 4QDDA 2ZYLA 2BMRA 1VM9A 4OGQD 2YIUC 1SQVE 2E74D 3GTSA 1SQQE 3GCEA 3H1KE 4HM7A 2IBZE 2QPZA 2NVEA 3EN1A 4QCKA 3EQQA 1RFSA 4H0LD 3L70E 2QJYC 2GBXA 3BCCE 2NWFA 2FYUE 2B1XA 3VMGD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HM3 A;  1NYK A;  5KLV E;  2JZA A;  2FYN C;  4PV1 D;  3GZX A;  2HML A;  3DQY A;  2NVF A;  1BCC E;  1KB9 E;  1VF5 D;  3CXH E;  2HMJ A;  4H13 D;  5HL4 A;  1SJG A;  1NTK E;  5AEU A;  4NBH D;  1SQP E;  2A06 E;  2GBW A;  3GZY A;  3VMI D;  3CWB E;  4P1B H;  4HJL A;  2HMK A;  4AIV A;  2NVG A;  3FOU A;  2QJP C;  4HM2 A;  2Q3W A;  1SQB E;  4P1C H;  3L73 E;  2E76 D;  1O7G A;  4HM0 A;  2YFL A;  2QJK C;  1NTM E;  3L74 E;  4HKV A;  4NBE D;  1NTZ E;  1L0L E;  2D2C D;  1NDO A;  2HMM A;  2XRX A;  3GL2 A;  1SQX E;  2JO6 A;  1L0N E;  4QDC A;  4AAY B;  2XSO A;  4EMJ B;  4NBD D;  2NUM A;  1FQT A;  2XR8 A;  3L75 E;  4H44 D;  3D89 A;  1PP9 E;  4U3F E;  2YVJ B;  1G8K B;  3GB4 A;  2HMO A;  2E75 D;  2I7F A;  1O7H A;  2E4Q A;  2CKF A;  1JM1 A;  3GKE A;  2DE5 D;  3AZC A;  2HMN A;  1O7W A;  2YFJ A;  4HM4 A;  3GOB A;  3H1I E;  2B24 A;  4NB9 D;  4NBC D;  1O7P A;  3L71 E;  5CXM A;  1KYO E;  4NB8 D;  2BMO A;  4HM8 A;  4QUP A;  2BCC E;  1UUW A;  1G8J B;  2BMQ A;  4NBG D;  1NU1 E;  1RIE A;  3C0D A;  1ULJ A;  2YFI A;  3H1J E;  5AEW A;  1BE3 E;  4NBF D;  3GL0 A;  3VMH D;  3N0Q A;  1EZV E;  4NBA D;  1O7N A;  1UUV A;  1Q90 C;  1PPJ E;  4QUQ A;  2DE6 D;  3CX5 E;  3VCP A;  2DE7 D;  3GTE A;  2E4P A;  4HM5 A;  3H1L E;  2ZT9 D;  4PD4 E;  5BOK A;  3TGU E;  4QUR A;  5KKZ C;  2NUK A;  1ZRT E;  4HM6 A;  1EG9 A;  2XSH A;  1O7M A;  1VCK A;  1P84 E;  3VCA A;  1WQL A;  4NBB D;  4QDF B;  3L72 E;  4HM1 A;  4QDF A;  3H1H E;  5KLI C;  1ULI A;  4QDD A;  2ZYL A;  2BMR A;  1VM9 A;  4OGQ D;  2YIU C;  1SQV E;  2E74 D;  3GTS A;  1SQQ E;  3GCE A;  3H1K E;  4HM7 A;  2IBZ E;  2QPZ A;  2NVE A;  3EN1 A;  4QCK A;  3EQQ A;  1RFS A;  4H0L D;  3L70 E;  2QJY C;  2GBX A;  3BCC E;  2NWF A;  2FYU E;  2B1X A;  3VMG D; 
#chains in the Genus database with same CATH topology
 4HM3 A;  1NYK A;  5KLV E;  2JZA A;  2FYN C;  4PV1 D;  3GZX A;  2HML A;  3DQY A;  2NVF A;  1BCC E;  1KB9 E;  1VF5 D;  3CXH E;  2HMJ A;  4H13 D;  5HL4 A;  1SJG A;  1NTK E;  5AEU A;  4NBH D;  1SQP E;  2A06 E;  2GBW A;  3GZY A;  3VMI D;  3CWB E;  4P1B H;  4HJL A;  2HMK A;  4AIV A;  2NVG A;  3FOU A;  2QJP C;  4HM2 A;  2Q3W A;  1SQB E;  4P1C H;  3L73 E;  2E76 D;  1O7G A;  4HM0 A;  2YFL A;  2QJK C;  1NTM E;  3L74 E;  4HKV A;  4NBE D;  1NTZ E;  1L0L E;  2D2C D;  1NDO A;  2HMM A;  2XRX A;  3GL2 A;  1SQX E;  2JO6 A;  1L0N E;  4QDC A;  4AAY B;  2XSO A;  4EMJ B;  4NBD D;  2NUM A;  1FQT A;  2XR8 A;  3L75 E;  4H44 D;  3D89 A;  1PP9 E;  4U3F E;  2YVJ B;  1G8K B;  3GB4 A;  2HMO A;  2E75 D;  2I7F A;  1O7H A;  2E4Q A;  2CKF A;  1JM1 A;  3GKE A;  2DE5 D;  3AZC A;  2HMN A;  1O7W A;  2YFJ A;  4HM4 A;  3GOB A;  3H1I E;  2B24 A;  4NB9 D;  4NBC D;  1O7P A;  3L71 E;  5CXM A;  1KYO E;  4NB8 D;  2BMO A;  4HM8 A;  4QUP A;  2BCC E;  1UUW A;  1G8J B;  2BMQ A;  4NBG D;  1NU1 E;  1RIE A;  3C0D A;  1ULJ A;  2YFI A;  3H1J E;  5AEW A;  1BE3 E;  4NBF D;  3GL0 A;  3VMH D;  3N0Q A;  1EZV E;  4NBA D;  1O7N A;  1UUV A;  1Q90 C;  1PPJ E;  4QUQ A;  2DE6 D;  3CX5 E;  3VCP A;  2DE7 D;  3GTE A;  2E4P A;  4HM5 A;  3H1L E;  2ZT9 D;  4PD4 E;  5BOK A;  3TGU E;  4QUR A;  5KKZ C;  2NUK A;  1ZRT E;  4HM6 A;  1EG9 A;  2XSH A;  1O7M A;  1VCK A;  1P84 E;  3VCA A;  1WQL A;  4NBB D;  4QDF B;  3L72 E;  4HM1 A;  4QDF A;  3H1H E;  5KLI C;  1ULI A;  4QDD A;  2ZYL A;  2BMR A;  1VM9 A;  4OGQ D;  2YIU C;  1SQV E;  2E74 D;  3GTS A;  1SQQ E;  3GCE A;  3H1K E;  4HM7 A;  2IBZ E;  2QPZ A;  2NVE A;  3EN1 A;  4QCK A;  3EQQ A;  1RFS A;  4H0L D;  3L70 E;  2QJY C;  2GBX A;  3BCC E;  2NWF A;  2FYU E;  2B1X A;  3VMG D; 
#chains in the Genus database with same CATH homology
 4HM3 A;  1NYK A;  5KLV E;  2JZA A;  2FYN C;  4PV1 D;  3GZX A;  2HML A;  3DQY A;  2NVF A;  1BCC E;  1KB9 E;  1VF5 D;  3CXH E;  2HMJ A;  4H13 D;  5HL4 A;  1SJG A;  1NTK E;  5AEU A;  4NBH D;  1SQP E;  2A06 E;  2GBW A;  3GZY A;  3VMI D;  3CWB E;  4P1B H;  4HJL A;  2HMK A;  4AIV A;  2NVG A;  3FOU A;  2QJP C;  4HM2 A;  2Q3W A;  1SQB E;  4P1C H;  3L73 E;  2E76 D;  1O7G A;  4HM0 A;  2YFL A;  2QJK C;  1NTM E;  3L74 E;  4HKV A;  4NBE D;  1NTZ E;  1L0L E;  2D2C D;  1NDO A;  2HMM A;  2XRX A;  3GL2 A;  1SQX E;  2JO6 A;  1L0N E;  4QDC A;  4AAY B;  2XSO A;  4EMJ B;  4NBD D;  2NUM A;  1FQT A;  2XR8 A;  3L75 E;  4H44 D;  3D89 A;  1PP9 E;  4U3F E;  2YVJ B;  1G8K B;  3GB4 A;  2HMO A;  2E75 D;  2I7F A;  1O7H A;  2E4Q A;  2CKF A;  1JM1 A;  3GKE A;  2DE5 D;  3AZC A;  2HMN A;  1O7W A;  2YFJ A;  4HM4 A;  3GOB A;  3H1I E;  2B24 A;  4NB9 D;  4NBC D;  1O7P A;  3L71 E;  5CXM A;  1KYO E;  4NB8 D;  2BMO A;  4HM8 A;  4QUP A;  2BCC E;  1UUW A;  1G8J B;  2BMQ A;  4NBG D;  1NU1 E;  1RIE A;  3C0D A;  1ULJ A;  2YFI A;  3H1J E;  5AEW A;  1BE3 E;  4NBF D;  3GL0 A;  3VMH D;  3N0Q A;  1EZV E;  4NBA D;  1O7N A;  1UUV A;  1Q90 C;  1PPJ E;  4QUQ A;  2DE6 D;  3CX5 E;  3VCP A;  2DE7 D;  3GTE A;  2E4P A;  4HM5 A;  3H1L E;  2ZT9 D;  4PD4 E;  5BOK A;  3TGU E;  4QUR A;  5KKZ C;  2NUK A;  1ZRT E;  4HM6 A;  1EG9 A;  2XSH A;  1O7M A;  1VCK A;  1P84 E;  3VCA A;  1WQL A;  4NBB D;  4QDF B;  3L72 E;  4HM1 A;  4QDF A;  3H1H E;  5KLI C;  1ULI A;  4QDD A;  2ZYL A;  2BMR A;  1VM9 A;  4OGQ D;  2YIU C;  1SQV E;  2E74 D;  3GTS A;  1SQQ E;  3GCE A;  3H1K E;  4HM7 A;  2IBZ E;  2QPZ A;  2NVE A;  3EN1 A;  4QCK A;  3EQQ A;  1RFS A;  4H0L D;  3L70 E;  2QJY C;  2GBX A;  3BCC E;  2NWF A;  2FYU E;  2B1X A;  3VMG D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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