2XRXA

Crystal structure of biphenyl dioxygenase in complex with biphenyl from burkholderia xenovorans lb400
Total Genus 141
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
141
sequence length
442
structure length
432
Chain Sequence
NWTPEAIRGLVDQEKGLLDPRIYADQSLYELELERVFGRSWLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAFDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLSQAQIPTKGNQFRAAWGGHGSGWYVDEPGSLLAVMGPKVTQYWTEGPAAELAEQRLGHTGMPVRRMVGQHMTIFPTCSFLPTFNNIRIWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPLNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMSEPSWATLKP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords BIPHENYL DIOXYGENASE SUBUNIT ALPHA
publication title Structural Insight Into the Expanded Pcb-Degrading Abilities of a Biphenyl Dioxygenase Obtained by Directed Evolution.
pubmed doi rcsb
source organism Burkholderia xenovorans
molecule tags Oxidoreductase
total genus 141
structure length 432
sequence length 442
chains with identical sequence C, E, G, I, K, M, O, Q, S, U, W
ec nomenclature ec 1.14.12.18: Biphenyl 2,3-dioxygenase.
pdb deposition date 2010-09-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2xrxA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2xrxA01
2DE5D 2GBWA 4NB8D 2JZAA 4NBCD 1SQQE 1Z03A 2CKFA 1SQVE 2GBXA 2YFIA 4HM7A 4NBHD 3VMGA 2E76D 2E74D 3N0QA 2E4PA 3GTEA 3GTSA 4NBGD 4QCKA 1O7WA 4NBBA 1O7GA 4HM6A 1SJGA 1NDOA 2DE7A 1KYOE 1VCKA 4H44D 1G8JB 1Z02A 1ULJA 1O7PA 2HMKA 3CX5E 1NYKA 3VMHA 3EN1A 4PV1D 4AIVA 2HMNA 3GL0A 4NBDD 1NTME 4NBAA 4QUPA 3L74E 1RIEA 5BOKA 4P1BH 4H13D 4NBFD 4NB9D 2Q3WA 1G8KB 2ZYLA 1SQPE 2B1XA 2BMOA 2XSOA 3H1KE 2DE6A 2NVEA 2BMRA 1ULIA 3GZYA 4HKVA 4QDFA 3L70E 3VMID 3H1JE 2QJPC 3VCAA 1UUVA 2YIUC 2HMMA 1KB9E 1NTKE 4NBCA 1SQXE 4NBHA 1FQTA 2BMQA 4NBBD 3VCPA 4NBGA 2BCCE 3H1LE 3GOBA 1NU1E 2DE7D 2NUMA 2XRXA 3GKEA 1WQLA 4OGQD 4NBED 1Q90C 4P1CH 2JO6A 3VMHD 2HMLA 2ZT9D 4HM8A 5AEWA 3GKQA 1WW9A 4HM5A 4NBAD 1O7MA 2NVFA 4H0LD 3TGUE 1EZVE 4NBDA 3FOUA 2NVGA 1RFSA 4QDCA 4HM4A 1O7NA 4AAYB 2YVJB 4HJLA 4NB9A 2DE5A 2YFLA 1SQBE 2DE6D 2E75D 5AEUA 4NB8A 1L0NE 5KLIC 5KLVE 3VMGD 3DQYA 2QJYC 3D89A 2E4QA 2FYUE 3H1IE 1NTZE 1BE3E 4QURA 2HMJA 1BCCE 3VMIA 3CWBE 2QJKC 2QPZA 2B24A 1P84E 1VF5D 1VM9A 3GCEA 2A06E 1EG9A 3L71E 3GB4A 4U3FE 5KKZC 1UUWA 1O7HA 1PPJE 4HM3A 4HM1A 2NUKA 2FYNC 2IBZE 2NWFA 3L72E 3L75E 5HL4A 2YFJA 1Z01A 4QDFB 2XR8A 3GL2A 1JM1A 3GZXA 5CXMA 4NBEA 3H1HE 1PP9E 4NBFA 2D2CD 4PD4E 3CXHE 3BCCE 1ZRTE 3C0DA 4QDDA 4QUQA 3L73E 2XSHA 3GCFA 2HMOA 1L0LE 4EMJB 3AZCA 4HM2A 2I7FA 3EQQA 4HM0A
chains in the Genus database with same CATH superfamily
2DE5D 2GBWA 4NB8D 2JZAA 4NBCD 1SQQE 1Z03A 2CKFA 1SQVE 2GBXA 2YFIA 4HM7A 4NBHD 3VMGA 2E76D 2E74D 3N0QA 2E4PA 3GTEA 3GTSA 4NBGD 4QCKA 1O7WA 4NBBA 1O7GA 4HM6A 1SJGA 1NDOA 2DE7A 1KYOE 1VCKA 4H44D 1G8JB 1Z02A 1ULJA 1O7PA 2HMKA 3CX5E 1NYKA 3VMHA 3EN1A 4PV1D 4AIVA 2HMNA 3GL0A 4NBDD 1NTME 4NBAA 4QUPA 3L74E 1RIEA 5BOKA 4P1BH 4H13D 4NBFD 4NB9D 2Q3WA 1G8KB 2ZYLA 1SQPE 2B1XA 2BMOA 2XSOA 3H1KE 2DE6A 2NVEA 2BMRA 1ULIA 3GZYA 4HKVA 4QDFA 3L70E 3VMID 3H1JE 2QJPC 3VCAA 1UUVA 2YIUC 2HMMA 1KB9E 1NTKE 4NBCA 1SQXE 4NBHA 1FQTA 2BMQA 4NBBD 3VCPA 4NBGA 2BCCE 3H1LE 3GOBA 1NU1E 2DE7D 2NUMA 2XRXA 3GKEA 1WQLA 4OGQD 4NBED 1Q90C 4P1CH 2JO6A 3VMHD 2HMLA 2ZT9D 4HM8A 5AEWA 3GKQA 1WW9A 4HM5A 4NBAD 1O7MA 2NVFA 4H0LD 3TGUE 1EZVE 4NBDA 3FOUA 2NVGA 1RFSA 4QDCA 4HM4A 1O7NA 4AAYB 2YVJB 4HJLA 4NB9A 2DE5A 2YFLA 1SQBE 2DE6D 2E75D 5AEUA 4NB8A 1L0NE 5KLIC 5KLVE 3VMGD 3DQYA 2QJYC 3D89A 2E4QA 2FYUE 3H1IE 1NTZE 1BE3E 4QURA 2HMJA 1BCCE 3VMIA 3CWBE 2QJKC 2QPZA 2B24A 1P84E 1VF5D 1VM9A 3GCEA 2A06E 1EG9A 3L71E 3GB4A 4U3FE 5KKZC 1UUWA 1O7HA 1PPJE 4HM3A 4HM1A 2NUKA 2FYNC 2IBZE 2NWFA 3L72E 3L75E 5HL4A 2YFJA 1Z01A 4QDFB 2XR8A 3GL2A 1JM1A 3GZXA 5CXMA 4NBEA 3H1HE 1PP9E 4NBFA 2D2CD 4PD4E 3CXHE 3BCCE 1ZRTE 3C0DA 4QDDA 4QUQA 3L73E 2XSHA 3GCFA 2HMOA 1L0LE 4EMJB 3AZCA 4HM2A 2I7FA 3EQQA 4HM0A
chains in the Genus database with same CATH topology
2DE5D 2GBWA 4NB8D 2JZAA 4NBCD 1SQQE 1Z03A 2CKFA 1SQVE 2GBXA 2YFIA 4HM7A 4NBHD 3VMGA 2E76D 2E74D 3N0QA 2E4PA 3GTEA 3GTSA 4NBGD 4QCKA 1O7WA 4NBBA 1O7GA 4HM6A 1SJGA 1NDOA 2DE7A 1KYOE 1VCKA 4H44D 1G8JB 1Z02A 1ULJA 1O7PA 2HMKA 3CX5E 1NYKA 3VMHA 3EN1A 4PV1D 4AIVA 2HMNA 3GL0A 4NBDD 1NTME 4NBAA 4QUPA 3L74E 1RIEA 5BOKA 4P1BH 4H13D 4NBFD 4NB9D 2Q3WA 1G8KB 2ZYLA 1SQPE 2B1XA 2BMOA 2XSOA 3H1KE 2DE6A 2NVEA 2BMRA 1ULIA 3GZYA 4HKVA 4QDFA 3L70E 3VMID 3H1JE 2QJPC 3VCAA 1UUVA 2YIUC 2HMMA 1KB9E 1NTKE 4NBCA 1SQXE 4NBHA 1FQTA 2BMQA 4NBBD 3VCPA 4NBGA 2BCCE 3H1LE 3GOBA 1NU1E 2DE7D 2NUMA 2XRXA 3GKEA 1WQLA 4OGQD 4NBED 1Q90C 4P1CH 2JO6A 3VMHD 2HMLA 2ZT9D 4HM8A 5AEWA 3GKQA 1WW9A 4HM5A 4NBAD 1O7MA 2NVFA 4H0LD 3TGUE 1EZVE 4NBDA 3FOUA 2NVGA 1RFSA 4QDCA 4HM4A 1O7NA 4AAYB 2YVJB 4HJLA 4NB9A 2DE5A 2YFLA 1SQBE 2DE6D 2E75D 5AEUA 4NB8A 1L0NE 5KLIC 5KLVE 3VMGD 3DQYA 2QJYC 3D89A 2E4QA 2FYUE 3H1IE 1NTZE 1BE3E 4QURA 2HMJA 1BCCE 3VMIA 3CWBE 2QJKC 2QPZA 2B24A 1P84E 1VF5D 1VM9A 3GCEA 2A06E 1EG9A 3L71E 3GB4A 4U3FE 5KKZC 1UUWA 1O7HA 1PPJE 4HM3A 4HM1A 2NUKA 2FYNC 2IBZE 2NWFA 3L72E 3L75E 5HL4A 2YFJA 1Z01A 4QDFB 2XR8A 3GL2A 1JM1A 3GZXA 5CXMA 4NBEA 3H1HE 1PP9E 4NBFA 2D2CD 4PD4E 3CXHE 3BCCE 1ZRTE 3C0DA 4QDDA 4QUQA 3L73E 2XSHA 3GCFA 2HMOA 1L0LE 4EMJB 3AZCA 4HM2A 2I7FA 3EQQA 4HM0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DE5 D;  2GBW A;  4NB8 D;  2JZA A;  4NBC D;  1SQQ E;  1Z03 A;  2CKF A;  1SQV E;  2GBX A;  2YFI A;  4HM7 A;  4NBH D;  3VMG A;  2E76 D;  2E74 D;  3N0Q A;  2E4P A;  3GTE A;  3GTS A;  4NBG D;  4QCK A;  1O7W A;  4NBB A;  1O7G A;  4HM6 A;  1SJG A;  1NDO A;  2DE7 A;  1KYO E;  1VCK A;  4H44 D;  1G8J B;  1Z02 A;  1ULJ A;  1O7P A;  2HMK A;  3CX5 E;  1NYK A;  3VMH A;  3EN1 A;  4PV1 D;  4AIV A;  2HMN A;  3GL0 A;  4NBD D;  1NTM E;  4NBA A;  4QUP A;  3L74 E;  1RIE A;  5BOK A;  4P1B H;  4H13 D;  4NBF D;  4NB9 D;  2Q3W A;  1G8K B;  2ZYL A;  1SQP E;  2B1X A;  2BMO A;  2XSO A;  3H1K E;  2DE6 A;  2NVE A;  2BMR A;  1ULI A;  3GZY A;  4HKV A;  4QDF A;  3L70 E;  3VMI D;  3H1J E;  2QJP C;  3VCA A;  1UUV A;  2YIU C;  2HMM A;  1KB9 E;  1NTK E;  4NBC A;  1SQX E;  4NBH A;  1FQT A;  2BMQ A;  4NBB D;  3VCP A;  4NBG A;  2BCC E;  3H1L E;  3GOB A;  1NU1 E;  2DE7 D;  2NUM A;  2XRX A;  3GKE A;  1WQL A;  4OGQ D;  4NBE D;  1Q90 C;  4P1C H;  2JO6 A;  3VMH D;  2HML A;  2ZT9 D;  4HM8 A;  5AEW A;  3GKQ A;  1WW9 A;  4HM5 A;  4NBA D;  1O7M A;  2NVF A;  4H0L D;  3TGU E;  1EZV E;  4NBD A;  3FOU A;  2NVG A;  1RFS A;  4QDC A;  4HM4 A;  1O7N A;  4AAY B;  2YVJ B;  4HJL A;  4NB9 A;  2DE5 A;  2YFL A;  1SQB E;  2DE6 D;  2E75 D;  5AEU A;  4NB8 A;  1L0N E;  5KLI C;  5KLV E;  3VMG D;  3DQY A;  2QJY C;  3D89 A;  2E4Q A;  2FYU E;  3H1I E;  1NTZ E;  1BE3 E;  4QUR A;  2HMJ A;  1BCC E;  3VMI A;  3CWB E;  2QJK C;  2QPZ A;  2B24 A;  1P84 E;  1VF5 D;  1VM9 A;  3GCE A;  2A06 E;  1EG9 A;  3L71 E;  3GB4 A;  4U3F E;  5KKZ C;  1UUW A;  1O7H A;  1PPJ E;  4HM3 A;  4HM1 A;  2NUK A;  2FYN C;  2IBZ E;  2NWF A;  3L72 E;  3L75 E;  5HL4 A;  2YFJ A;  1Z01 A;  4QDF B;  2XR8 A;  3GL2 A;  1JM1 A;  3GZX A;  5CXM A;  4NBE A;  3H1H E;  1PP9 E;  4NBF A;  2D2C D;  4PD4 E;  3CXH E;  3BCC E;  1ZRT E;  3C0D A;  4QDD A;  4QUQ A;  3L73 E;  2XSH A;  3GCF A;  2HMO A;  1L0L E;  4EMJ B;  3AZC A;  4HM2 A;  2I7F A;  3EQQ A;  4HM0 A; 
#chains in the Genus database with same CATH topology
 2DE5 D;  2GBW A;  4NB8 D;  2JZA A;  4NBC D;  1SQQ E;  1Z03 A;  2CKF A;  1SQV E;  2GBX A;  2YFI A;  4HM7 A;  4NBH D;  3VMG A;  2E76 D;  2E74 D;  3N0Q A;  2E4P A;  3GTE A;  3GTS A;  4NBG D;  4QCK A;  1O7W A;  4NBB A;  1O7G A;  4HM6 A;  1SJG A;  1NDO A;  2DE7 A;  1KYO E;  1VCK A;  4H44 D;  1G8J B;  1Z02 A;  1ULJ A;  1O7P A;  2HMK A;  3CX5 E;  1NYK A;  3VMH A;  3EN1 A;  4PV1 D;  4AIV A;  2HMN A;  3GL0 A;  4NBD D;  1NTM E;  4NBA A;  4QUP A;  3L74 E;  1RIE A;  5BOK A;  4P1B H;  4H13 D;  4NBF D;  4NB9 D;  2Q3W A;  1G8K B;  2ZYL A;  1SQP E;  2B1X A;  2BMO A;  2XSO A;  3H1K E;  2DE6 A;  2NVE A;  2BMR A;  1ULI A;  3GZY A;  4HKV A;  4QDF A;  3L70 E;  3VMI D;  3H1J E;  2QJP C;  3VCA A;  1UUV A;  2YIU C;  2HMM A;  1KB9 E;  1NTK E;  4NBC A;  1SQX E;  4NBH A;  1FQT A;  2BMQ A;  4NBB D;  3VCP A;  4NBG A;  2BCC E;  3H1L E;  3GOB A;  1NU1 E;  2DE7 D;  2NUM A;  2XRX A;  3GKE A;  1WQL A;  4OGQ D;  4NBE D;  1Q90 C;  4P1C H;  2JO6 A;  3VMH D;  2HML A;  2ZT9 D;  4HM8 A;  5AEW A;  3GKQ A;  1WW9 A;  4HM5 A;  4NBA D;  1O7M A;  2NVF A;  4H0L D;  3TGU E;  1EZV E;  4NBD A;  3FOU A;  2NVG A;  1RFS A;  4QDC A;  4HM4 A;  1O7N A;  4AAY B;  2YVJ B;  4HJL A;  4NB9 A;  2DE5 A;  2YFL A;  1SQB E;  2DE6 D;  2E75 D;  5AEU A;  4NB8 A;  1L0N E;  5KLI C;  5KLV E;  3VMG D;  3DQY A;  2QJY C;  3D89 A;  2E4Q A;  2FYU E;  3H1I E;  1NTZ E;  1BE3 E;  4QUR A;  2HMJ A;  1BCC E;  3VMI A;  3CWB E;  2QJK C;  2QPZ A;  2B24 A;  1P84 E;  1VF5 D;  1VM9 A;  3GCE A;  2A06 E;  1EG9 A;  3L71 E;  3GB4 A;  4U3F E;  5KKZ C;  1UUW A;  1O7H A;  1PPJ E;  4HM3 A;  4HM1 A;  2NUK A;  2FYN C;  2IBZ E;  2NWF A;  3L72 E;  3L75 E;  5HL4 A;  2YFJ A;  1Z01 A;  4QDF B;  2XR8 A;  3GL2 A;  1JM1 A;  3GZX A;  5CXM A;  4NBE A;  3H1H E;  1PP9 E;  4NBF A;  2D2C D;  4PD4 E;  3CXH E;  3BCC E;  1ZRT E;  3C0D A;  4QDD A;  4QUQ A;  3L73 E;  2XSH A;  3GCF A;  2HMO A;  1L0L E;  4EMJ B;  3AZC A;  4HM2 A;  2I7F A;  3EQQ A;  4HM0 A; 
#chains in the Genus database with same CATH homology
 2DE5 D;  2GBW A;  4NB8 D;  2JZA A;  4NBC D;  1SQQ E;  1Z03 A;  2CKF A;  1SQV E;  2GBX A;  2YFI A;  4HM7 A;  4NBH D;  3VMG A;  2E76 D;  2E74 D;  3N0Q A;  2E4P A;  3GTE A;  3GTS A;  4NBG D;  4QCK A;  1O7W A;  4NBB A;  1O7G A;  4HM6 A;  1SJG A;  1NDO A;  2DE7 A;  1KYO E;  1VCK A;  4H44 D;  1G8J B;  1Z02 A;  1ULJ A;  1O7P A;  2HMK A;  3CX5 E;  1NYK A;  3VMH A;  3EN1 A;  4PV1 D;  4AIV A;  2HMN A;  3GL0 A;  4NBD D;  1NTM E;  4NBA A;  4QUP A;  3L74 E;  1RIE A;  5BOK A;  4P1B H;  4H13 D;  4NBF D;  4NB9 D;  2Q3W A;  1G8K B;  2ZYL A;  1SQP E;  2B1X A;  2BMO A;  2XSO A;  3H1K E;  2DE6 A;  2NVE A;  2BMR A;  1ULI A;  3GZY A;  4HKV A;  4QDF A;  3L70 E;  3VMI D;  3H1J E;  2QJP C;  3VCA A;  1UUV A;  2YIU C;  2HMM A;  1KB9 E;  1NTK E;  4NBC A;  1SQX E;  4NBH A;  1FQT A;  2BMQ A;  4NBB D;  3VCP A;  4NBG A;  2BCC E;  3H1L E;  3GOB A;  1NU1 E;  2DE7 D;  2NUM A;  2XRX A;  3GKE A;  1WQL A;  4OGQ D;  4NBE D;  1Q90 C;  4P1C H;  2JO6 A;  3VMH D;  2HML A;  2ZT9 D;  4HM8 A;  5AEW A;  3GKQ A;  1WW9 A;  4HM5 A;  4NBA D;  1O7M A;  2NVF A;  4H0L D;  3TGU E;  1EZV E;  4NBD A;  3FOU A;  2NVG A;  1RFS A;  4QDC A;  4HM4 A;  1O7N A;  4AAY B;  2YVJ B;  4HJL A;  4NB9 A;  2DE5 A;  2YFL A;  1SQB E;  2DE6 D;  2E75 D;  5AEU A;  4NB8 A;  1L0N E;  5KLI C;  5KLV E;  3VMG D;  3DQY A;  2QJY C;  3D89 A;  2E4Q A;  2FYU E;  3H1I E;  1NTZ E;  1BE3 E;  4QUR A;  2HMJ A;  1BCC E;  3VMI A;  3CWB E;  2QJK C;  2QPZ A;  2B24 A;  1P84 E;  1VF5 D;  1VM9 A;  3GCE A;  2A06 E;  1EG9 A;  3L71 E;  3GB4 A;  4U3F E;  5KKZ C;  1UUW A;  1O7H A;  1PPJ E;  4HM3 A;  4HM1 A;  2NUK A;  2FYN C;  2IBZ E;  2NWF A;  3L72 E;  3L75 E;  5HL4 A;  2YFJ A;  1Z01 A;  4QDF B;  2XR8 A;  3GL2 A;  1JM1 A;  3GZX A;  5CXM A;  4NBE A;  3H1H E;  1PP9 E;  4NBF A;  2D2C D;  4PD4 E;  3CXH E;  3BCC E;  1ZRT E;  3C0D A;  4QDD A;  4QUQ A;  3L73 E;  2XSH A;  3GCF A;  2HMO A;  1L0L E;  4EMJ B;  3AZC A;  4HM2 A;  2I7F A;  3EQQ A;  4HM0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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