2XRXA

Crystal structure of biphenyl dioxygenase in complex with biphenyl from burkholderia xenovorans lb400
Total Genus 141
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
141
sequence length
442
structure length
432
Chain Sequence
NWTPEAIRGLVDQEKGLLDPRIYADQSLYELELERVFGRSWLLLGHESHVPETGDFLATYMGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVPFEKEAFDKAEWGPLQARVATYKGLVFANWDVQAPDLETYLGDARPYMDVMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDMYHAGTTTHLSGILAGIPPEMDLSQAQIPTKGNQFRAAWGGHGSGWYVDEPGSLLAVMGPKVTQYWTEGPAAELAEQRLGHTGMPVRRMVGQHMTIFPTCSFLPTFNNIRIWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFEQDDGENWVEIQKGLRGYKAKSQPLNAQMGLGRSQTGHPDFPGNVGYVYAEEAARGMYHHWMRMMSEPSWATLKP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Burkholderia xenovorans
publication title Structural Insight Into the Expanded Pcb-Degrading Abilities of a Biphenyl Dioxygenase Obtained by Directed Evolution.
pubmed doi rcsb
molecule keywords BIPHENYL DIOXYGENASE SUBUNIT ALPHA
total genus 141
structure length 432
sequence length 442
chains with identical sequence C, E, G, I, K, M, O, Q, S, U, W
ec nomenclature ec 1.14.12.18: Biphenyl 2,3-dioxygenase.
pdb deposition date 2010-09-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2xrxA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2xrxA01
2BMRA 3GL0A 5AEUA 2DE5D 3VMHD 1RFSA 2B24A 3GB4A 2HMNA 4NB8A 1G8JB 1ULIA 3BCCE 4QDFB 2D2CD 2E4PA 2HMOA 1KB9E 4QCKA 1G8KB 2JZAA 2QJYC 2DE7D 1EZVE 4HM1A 4P1BH 4NBGA 3H1JE 5KLIC 2A06E 2XSOA 3EQQA 2HMMA 3GKQA 3D89A 2XR8A 4NB9A 3H1IE 2YIUC 4HM0A 4QDDA 2DE5A 4NBGD 2B1XA 1PP9E 1VCKA 4PV1D 4QUQA 3VMHA 1O7GA 4NBEA 2GBXA 3L70E 3L72E 2XRXA 3L74E 1Z02A 3FOUA 2HMKA 4NBHD 4NB9D 1O7NA 2DE7A 4NBFA 5HL4A 4NBAA 3TGUE 2CKFA 1SQVE 4HM5A 3VMID 1NDOA 1NTZE 3CX5E 4NBED 3GKEA 1NU1E 1O7WA 3C0DA 5AEWA 4U3FE 1P84E 1O7HA 4H0LD 1WW9A 1Z03A 1UUWA 1SQBE 4NBFD 4NBAD 4AIVA 2XSHA 3GCEA 3CXHE 3H1LE 2HMJA 4PD4E 1FQTA 2E74D 1L0NE 1ZRTE 3L71E 4H44D 4NBHA 2BMQA 4HKVA 3GZXA 4NBDD 1SQQE 3CWBE 2NVFA 2NUKA 4QDCA 3VMIA 2QJPC 4HM8A 1NTKE 1JM1A 3EN1A 2YFLA 2NWFA 1O7PA 2GBWA 3GTSA 2E4QA 2IBZE 1EG9A 2FYNC 2QJKC 4P1CH 1RIEA 4QDFA 2DE6A 1BCCE 5KKZC 3GOBA 5CXMA 4EMJB 3H1KE 4NBDA 1Q90C 1SJGA 2I7FA 4HM6A 3N0QA 2DE6D 2Q3WA 3VCAA 4HM2A 1KYOE 1BE3E 1PPJE 2E75D 1VM9A 3VMGA 4OGQD 4NBBD 5KLVE 3GL2A 2NVEA 3VCPA 5BOKA 2BMOA 4HM7A 1NTME 3AZCA 4HM4A 3L75E 1UUVA 3GZYA 3VMGD 2HMLA 4HJLA 2FYUE 1Z01A 1WQLA 3L73E 4H13D 4NBCA 2YFIA 1ULJA 2E76D 2JO6A 3DQYA 2QPZA 4NB8D 4QUPA 1VF5D 2ZYLA 2ZT9D 1SQXE 1L0LE 4NBBA 4NBCD 2BCCE 2YVJB 2NUMA 2NVGA 2YFJA 1NYKA 3H1HE 3GCFA 4QURA 4HM3A 4AAYB 1SQPE 1O7MA 3GTEA
chains in the Genus database with same CATH superfamily
2BMRA 3GL0A 5AEUA 2DE5D 3VMHD 1RFSA 2B24A 3GB4A 2HMNA 4NB8A 1G8JB 1ULIA 3BCCE 4QDFB 2D2CD 2E4PA 2HMOA 1KB9E 4QCKA 1G8KB 2JZAA 2QJYC 2DE7D 1EZVE 4HM1A 4P1BH 4NBGA 3H1JE 5KLIC 2A06E 2XSOA 3EQQA 2HMMA 3GKQA 3D89A 2XR8A 4NB9A 3H1IE 2YIUC 4HM0A 4QDDA 2DE5A 4NBGD 2B1XA 1PP9E 1VCKA 4PV1D 4QUQA 3VMHA 1O7GA 4NBEA 2GBXA 3L70E 3L72E 2XRXA 3L74E 1Z02A 3FOUA 2HMKA 4NBHD 4NB9D 1O7NA 2DE7A 4NBFA 5HL4A 4NBAA 3TGUE 2CKFA 1SQVE 4HM5A 3VMID 1NDOA 1NTZE 3CX5E 4NBED 3GKEA 1NU1E 1O7WA 3C0DA 5AEWA 4U3FE 1P84E 1O7HA 4H0LD 1WW9A 1Z03A 1UUWA 1SQBE 4NBFD 4NBAD 4AIVA 2XSHA 3GCEA 3CXHE 3H1LE 2HMJA 4PD4E 1FQTA 2E74D 1L0NE 1ZRTE 3L71E 4H44D 4NBHA 2BMQA 4HKVA 3GZXA 4NBDD 1SQQE 3CWBE 2NVFA 2NUKA 4QDCA 3VMIA 2QJPC 4HM8A 1NTKE 1JM1A 3EN1A 2YFLA 2NWFA 1O7PA 2GBWA 3GTSA 2E4QA 2IBZE 1EG9A 2FYNC 2QJKC 4P1CH 1RIEA 4QDFA 2DE6A 1BCCE 5KKZC 3GOBA 5CXMA 4EMJB 3H1KE 4NBDA 1Q90C 1SJGA 2I7FA 4HM6A 3N0QA 2DE6D 2Q3WA 3VCAA 4HM2A 1KYOE 1BE3E 1PPJE 2E75D 1VM9A 3VMGA 4OGQD 4NBBD 5KLVE 3GL2A 2NVEA 3VCPA 5BOKA 2BMOA 4HM7A 1NTME 3AZCA 4HM4A 3L75E 1UUVA 3GZYA 3VMGD 2HMLA 4HJLA 2FYUE 1Z01A 1WQLA 3L73E 4H13D 4NBCA 2YFIA 1ULJA 2E76D 2JO6A 3DQYA 2QPZA 4NB8D 4QUPA 1VF5D 2ZYLA 2ZT9D 1SQXE 1L0LE 4NBBA 4NBCD 2BCCE 2YVJB 2NUMA 2NVGA 2YFJA 1NYKA 3H1HE 3GCFA 4QURA 4HM3A 4AAYB 1SQPE 1O7MA 3GTEA
chains in the Genus database with same CATH topology
2BMRA 3GL0A 5AEUA 2DE5D 3VMHD 1RFSA 2B24A 3GB4A 2HMNA 4NB8A 1G8JB 1ULIA 3BCCE 4QDFB 2D2CD 2E4PA 2HMOA 1KB9E 4QCKA 1G8KB 2JZAA 2QJYC 2DE7D 1EZVE 4HM1A 4P1BH 4NBGA 3H1JE 5KLIC 2A06E 2XSOA 3EQQA 2HMMA 3GKQA 3D89A 2XR8A 4NB9A 3H1IE 2YIUC 4HM0A 4QDDA 2DE5A 4NBGD 2B1XA 1PP9E 1VCKA 4PV1D 4QUQA 3VMHA 1O7GA 4NBEA 2GBXA 3L70E 3L72E 2XRXA 3L74E 1Z02A 3FOUA 2HMKA 4NBHD 4NB9D 1O7NA 2DE7A 4NBFA 5HL4A 4NBAA 3TGUE 2CKFA 1SQVE 4HM5A 3VMID 1NDOA 1NTZE 3CX5E 4NBED 3GKEA 1NU1E 1O7WA 3C0DA 5AEWA 4U3FE 1P84E 1O7HA 4H0LD 1WW9A 1Z03A 1UUWA 1SQBE 4NBFD 4NBAD 4AIVA 2XSHA 3GCEA 3CXHE 3H1LE 2HMJA 4PD4E 1FQTA 2E74D 1L0NE 1ZRTE 3L71E 4H44D 4NBHA 2BMQA 4HKVA 3GZXA 4NBDD 1SQQE 3CWBE 2NVFA 2NUKA 4QDCA 3VMIA 2QJPC 4HM8A 1NTKE 1JM1A 3EN1A 2YFLA 2NWFA 1O7PA 2GBWA 3GTSA 2E4QA 2IBZE 1EG9A 2FYNC 2QJKC 4P1CH 1RIEA 4QDFA 2DE6A 1BCCE 5KKZC 3GOBA 5CXMA 4EMJB 3H1KE 4NBDA 1Q90C 1SJGA 2I7FA 4HM6A 3N0QA 2DE6D 2Q3WA 3VCAA 4HM2A 1KYOE 1BE3E 1PPJE 2E75D 1VM9A 3VMGA 4OGQD 4NBBD 5KLVE 3GL2A 2NVEA 3VCPA 5BOKA 2BMOA 4HM7A 1NTME 3AZCA 4HM4A 3L75E 1UUVA 3GZYA 3VMGD 2HMLA 4HJLA 2FYUE 1Z01A 1WQLA 3L73E 4H13D 4NBCA 2YFIA 1ULJA 2E76D 2JO6A 3DQYA 2QPZA 4NB8D 4QUPA 1VF5D 2ZYLA 2ZT9D 1SQXE 1L0LE 4NBBA 4NBCD 2BCCE 2YVJB 2NUMA 2NVGA 2YFJA 1NYKA 3H1HE 3GCFA 4QURA 4HM3A 4AAYB 1SQPE 1O7MA 3GTEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BMR A;  3GL0 A;  5AEU A;  2DE5 D;  3VMH D;  1RFS A;  2B24 A;  3GB4 A;  2HMN A;  4NB8 A;  1G8J B;  1ULI A;  3BCC E;  4QDF B;  2D2C D;  2E4P A;  2HMO A;  1KB9 E;  4QCK A;  1G8K B;  2JZA A;  2QJY C;  2DE7 D;  1EZV E;  4HM1 A;  4P1B H;  4NBG A;  3H1J E;  5KLI C;  2A06 E;  2XSO A;  3EQQ A;  2HMM A;  3GKQ A;  3D89 A;  2XR8 A;  4NB9 A;  3H1I E;  2YIU C;  4HM0 A;  4QDD A;  2DE5 A;  4NBG D;  2B1X A;  1PP9 E;  1VCK A;  4PV1 D;  4QUQ A;  3VMH A;  1O7G A;  4NBE A;  2GBX A;  3L70 E;  3L72 E;  2XRX A;  3L74 E;  1Z02 A;  3FOU A;  2HMK A;  4NBH D;  4NB9 D;  1O7N A;  2DE7 A;  4NBF A;  5HL4 A;  4NBA A;  3TGU E;  2CKF A;  1SQV E;  4HM5 A;  3VMI D;  1NDO A;  1NTZ E;  3CX5 E;  4NBE D;  3GKE A;  1NU1 E;  1O7W A;  3C0D A;  5AEW A;  4U3F E;  1P84 E;  1O7H A;  4H0L D;  1WW9 A;  1Z03 A;  1UUW A;  1SQB E;  4NBF D;  4NBA D;  4AIV A;  2XSH A;  3GCE A;  3CXH E;  3H1L E;  2HMJ A;  4PD4 E;  1FQT A;  2E74 D;  1L0N E;  1ZRT E;  3L71 E;  4H44 D;  4NBH A;  2BMQ A;  4HKV A;  3GZX A;  4NBD D;  1SQQ E;  3CWB E;  2NVF A;  2NUK A;  4QDC A;  3VMI A;  2QJP C;  4HM8 A;  1NTK E;  1JM1 A;  3EN1 A;  2YFL A;  2NWF A;  1O7P A;  2GBW A;  3GTS A;  2E4Q A;  2IBZ E;  1EG9 A;  2FYN C;  2QJK C;  4P1C H;  1RIE A;  4QDF A;  2DE6 A;  1BCC E;  5KKZ C;  3GOB A;  5CXM A;  4EMJ B;  3H1K E;  4NBD A;  1Q90 C;  1SJG A;  2I7F A;  4HM6 A;  3N0Q A;  2DE6 D;  2Q3W A;  3VCA A;  4HM2 A;  1KYO E;  1BE3 E;  1PPJ E;  2E75 D;  1VM9 A;  3VMG A;  4OGQ D;  4NBB D;  5KLV E;  3GL2 A;  2NVE A;  3VCP A;  5BOK A;  2BMO A;  4HM7 A;  1NTM E;  3AZC A;  4HM4 A;  3L75 E;  1UUV A;  3GZY A;  3VMG D;  2HML A;  4HJL A;  2FYU E;  1Z01 A;  1WQL A;  3L73 E;  4H13 D;  4NBC A;  2YFI A;  1ULJ A;  2E76 D;  2JO6 A;  3DQY A;  2QPZ A;  4NB8 D;  4QUP A;  1VF5 D;  2ZYL A;  2ZT9 D;  1SQX E;  1L0L E;  4NBB A;  4NBC D;  2BCC E;  2YVJ B;  2NUM A;  2NVG A;  2YFJ A;  1NYK A;  3H1H E;  3GCF A;  4QUR A;  4HM3 A;  4AAY B;  1SQP E;  1O7M A;  3GTE A; 
#chains in the Genus database with same CATH topology
 2BMR A;  3GL0 A;  5AEU A;  2DE5 D;  3VMH D;  1RFS A;  2B24 A;  3GB4 A;  2HMN A;  4NB8 A;  1G8J B;  1ULI A;  3BCC E;  4QDF B;  2D2C D;  2E4P A;  2HMO A;  1KB9 E;  4QCK A;  1G8K B;  2JZA A;  2QJY C;  2DE7 D;  1EZV E;  4HM1 A;  4P1B H;  4NBG A;  3H1J E;  5KLI C;  2A06 E;  2XSO A;  3EQQ A;  2HMM A;  3GKQ A;  3D89 A;  2XR8 A;  4NB9 A;  3H1I E;  2YIU C;  4HM0 A;  4QDD A;  2DE5 A;  4NBG D;  2B1X A;  1PP9 E;  1VCK A;  4PV1 D;  4QUQ A;  3VMH A;  1O7G A;  4NBE A;  2GBX A;  3L70 E;  3L72 E;  2XRX A;  3L74 E;  1Z02 A;  3FOU A;  2HMK A;  4NBH D;  4NB9 D;  1O7N A;  2DE7 A;  4NBF A;  5HL4 A;  4NBA A;  3TGU E;  2CKF A;  1SQV E;  4HM5 A;  3VMI D;  1NDO A;  1NTZ E;  3CX5 E;  4NBE D;  3GKE A;  1NU1 E;  1O7W A;  3C0D A;  5AEW A;  4U3F E;  1P84 E;  1O7H A;  4H0L D;  1WW9 A;  1Z03 A;  1UUW A;  1SQB E;  4NBF D;  4NBA D;  4AIV A;  2XSH A;  3GCE A;  3CXH E;  3H1L E;  2HMJ A;  4PD4 E;  1FQT A;  2E74 D;  1L0N E;  1ZRT E;  3L71 E;  4H44 D;  4NBH A;  2BMQ A;  4HKV A;  3GZX A;  4NBD D;  1SQQ E;  3CWB E;  2NVF A;  2NUK A;  4QDC A;  3VMI A;  2QJP C;  4HM8 A;  1NTK E;  1JM1 A;  3EN1 A;  2YFL A;  2NWF A;  1O7P A;  2GBW A;  3GTS A;  2E4Q A;  2IBZ E;  1EG9 A;  2FYN C;  2QJK C;  4P1C H;  1RIE A;  4QDF A;  2DE6 A;  1BCC E;  5KKZ C;  3GOB A;  5CXM A;  4EMJ B;  3H1K E;  4NBD A;  1Q90 C;  1SJG A;  2I7F A;  4HM6 A;  3N0Q A;  2DE6 D;  2Q3W A;  3VCA A;  4HM2 A;  1KYO E;  1BE3 E;  1PPJ E;  2E75 D;  1VM9 A;  3VMG A;  4OGQ D;  4NBB D;  5KLV E;  3GL2 A;  2NVE A;  3VCP A;  5BOK A;  2BMO A;  4HM7 A;  1NTM E;  3AZC A;  4HM4 A;  3L75 E;  1UUV A;  3GZY A;  3VMG D;  2HML A;  4HJL A;  2FYU E;  1Z01 A;  1WQL A;  3L73 E;  4H13 D;  4NBC A;  2YFI A;  1ULJ A;  2E76 D;  2JO6 A;  3DQY A;  2QPZ A;  4NB8 D;  4QUP A;  1VF5 D;  2ZYL A;  2ZT9 D;  1SQX E;  1L0L E;  4NBB A;  4NBC D;  2BCC E;  2YVJ B;  2NUM A;  2NVG A;  2YFJ A;  1NYK A;  3H1H E;  3GCF A;  4QUR A;  4HM3 A;  4AAY B;  1SQP E;  1O7M A;  3GTE A; 
#chains in the Genus database with same CATH homology
 2BMR A;  3GL0 A;  5AEU A;  2DE5 D;  3VMH D;  1RFS A;  2B24 A;  3GB4 A;  2HMN A;  4NB8 A;  1G8J B;  1ULI A;  3BCC E;  4QDF B;  2D2C D;  2E4P A;  2HMO A;  1KB9 E;  4QCK A;  1G8K B;  2JZA A;  2QJY C;  2DE7 D;  1EZV E;  4HM1 A;  4P1B H;  4NBG A;  3H1J E;  5KLI C;  2A06 E;  2XSO A;  3EQQ A;  2HMM A;  3GKQ A;  3D89 A;  2XR8 A;  4NB9 A;  3H1I E;  2YIU C;  4HM0 A;  4QDD A;  2DE5 A;  4NBG D;  2B1X A;  1PP9 E;  1VCK A;  4PV1 D;  4QUQ A;  3VMH A;  1O7G A;  4NBE A;  2GBX A;  3L70 E;  3L72 E;  2XRX A;  3L74 E;  1Z02 A;  3FOU A;  2HMK A;  4NBH D;  4NB9 D;  1O7N A;  2DE7 A;  4NBF A;  5HL4 A;  4NBA A;  3TGU E;  2CKF A;  1SQV E;  4HM5 A;  3VMI D;  1NDO A;  1NTZ E;  3CX5 E;  4NBE D;  3GKE A;  1NU1 E;  1O7W A;  3C0D A;  5AEW A;  4U3F E;  1P84 E;  1O7H A;  4H0L D;  1WW9 A;  1Z03 A;  1UUW A;  1SQB E;  4NBF D;  4NBA D;  4AIV A;  2XSH A;  3GCE A;  3CXH E;  3H1L E;  2HMJ A;  4PD4 E;  1FQT A;  2E74 D;  1L0N E;  1ZRT E;  3L71 E;  4H44 D;  4NBH A;  2BMQ A;  4HKV A;  3GZX A;  4NBD D;  1SQQ E;  3CWB E;  2NVF A;  2NUK A;  4QDC A;  3VMI A;  2QJP C;  4HM8 A;  1NTK E;  1JM1 A;  3EN1 A;  2YFL A;  2NWF A;  1O7P A;  2GBW A;  3GTS A;  2E4Q A;  2IBZ E;  1EG9 A;  2FYN C;  2QJK C;  4P1C H;  1RIE A;  4QDF A;  2DE6 A;  1BCC E;  5KKZ C;  3GOB A;  5CXM A;  4EMJ B;  3H1K E;  4NBD A;  1Q90 C;  1SJG A;  2I7F A;  4HM6 A;  3N0Q A;  2DE6 D;  2Q3W A;  3VCA A;  4HM2 A;  1KYO E;  1BE3 E;  1PPJ E;  2E75 D;  1VM9 A;  3VMG A;  4OGQ D;  4NBB D;  5KLV E;  3GL2 A;  2NVE A;  3VCP A;  5BOK A;  2BMO A;  4HM7 A;  1NTM E;  3AZC A;  4HM4 A;  3L75 E;  1UUV A;  3GZY A;  3VMG D;  2HML A;  4HJL A;  2FYU E;  1Z01 A;  1WQL A;  3L73 E;  4H13 D;  4NBC A;  2YFI A;  1ULJ A;  2E76 D;  2JO6 A;  3DQY A;  2QPZ A;  4NB8 D;  4QUP A;  1VF5 D;  2ZYL A;  2ZT9 D;  1SQX E;  1L0L E;  4NBB A;  4NBC D;  2BCC E;  2YVJ B;  2NUM A;  2NVG A;  2YFJ A;  1NYK A;  3H1H E;  3GCF A;  4QUR A;  4HM3 A;  4AAY B;  1SQP E;  1O7M A;  3GTE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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