3C0DA

Crystal structure of the putative nitrite reductase nadph (small subunit) oxidoreductase protein q87hb1. northeast structural genomics consortium target vpr162
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
109
structure length
109
Chain Sequence
LTKVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSGQCLEDEAHCLKTWRVTVDDNQVCYLAKEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the putative nitrite reductase NADPH (small subunit) oxidoreductase protein Q87HB1.
rcsb
molecule keywords Putative nitrite reductase NADPH (Small subunit) oxidoreduct
source organism Vibrio parahaemolyticus rimd 2210633
molecule tags Oxidoreductase
total genus 14
structure length 109
sequence length 109
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2008-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13806 Rieske_2 Rieske-like [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3c0dA00
2HMKA 3EQQA 4QUQA 3GCEA 5KLIC 2E74D 1SQXE 1O7PA 3H1IE 2QJYC 4PD4E 2ZYLA 1G8JB 2FYUE 3GOBA 1BCCE 1RFSA 4NBFD 4QCKA 4AIVA 2NVFA 5KLVE 1NTME 4P1BH 1WQLA 2B1XA 4NBED 4QDDA 1VM9A 2QPZA 2YVJB 1UUVA 2NWFA 2BMOA 3CWBE 1O7NA 1RIEA 2NUMA 2XSOA 3CX5E 4HM1A 2D2CD 5AEWA 3GZXA 2I7FA 4HKVA 1Q90C 1VF5D 3L75E 4AAYB 2DE7D 1G8KB 1SQVE 2E76D 1O7GA 1L0NE 3H1JE 4U3FE 2NUKA 1NDOA 1PPJE 1PP9E 2JZAA 2DE5D 4QUPA 3GTEA 1NU1E 1VCKA 2A06E 1SQBE 2CKFA 4HM3A 2JO6A 4NBGD 2YIUC 1O7WA 1EZVE 1NYKA 2XSHA 1KYOE 3VCPA 3L73E 3GL2A 3H1HE 4HM8A 2ZT9D 3L74E 1ULIA 3D89A 2HMMA 2GBWA 2Q3WA 4NBAD 1UUWA 1KB9E 2QJPC 1SQQE 4HM2A 4H13D 5AEUA 4NBBD 5KKZC 3TGUE 3EN1A 1O7MA 4NB9D 2FYNC 4HM6A 1NTZE 4OGQD 3VMID 1ULJA 4HJLA 4QDFA 1P84E 4EMJB 2E4PA 3FOUA 3N0QA 1SJGA 4NB8D 5CXMA 2YFIA 1O7HA 2YFLA 3L70E 4HM7A 1BE3E 2HMOA 2HMNA 3DQYA 3BCCE 4HM4A 1NTKE 4HM0A 2NVEA 1L0LE 2BMQA 4NBCD 1EG9A 4NBHD 2HMJA 3GTSA 2B24A 3L71E 2XR8A 2HMLA 2BMRA 3GB4A 5BOKA 3GL0A 4PV1D 2XRXA 4HM5A 2NVGA 3GKEA 2E4QA 4P1CH 3VCAA 2DE6D 2YFJA 3VMHD 5HL4A 2BCCE 4QURA 3CXHE 3H1LE 1FQTA 4H44D 4QDCA 3H1KE 1JM1A 3C0DA 3GZYA 1SQPE 2E75D 2GBXA 3L72E 2QJKC 4H0LD 4NBDD 3AZCA 3VMGD 4QDFB 1ZRTE 2IBZE
chains in the Genus database with same CATH superfamily
2HMKA 3EQQA 4QUQA 3GCEA 5KLIC 2E74D 1SQXE 1O7PA 3H1IE 2QJYC 4PD4E 2ZYLA 1G8JB 2FYUE 3GOBA 1BCCE 1RFSA 4NBFD 4QCKA 4AIVA 2NVFA 5KLVE 1NTME 4P1BH 1WQLA 2B1XA 4NBED 4QDDA 1VM9A 2QPZA 2YVJB 1UUVA 2NWFA 2BMOA 3CWBE 1O7NA 1RIEA 2NUMA 2XSOA 3CX5E 4HM1A 2D2CD 5AEWA 3GZXA 2I7FA 4HKVA 1Q90C 1VF5D 3L75E 4AAYB 2DE7D 1G8KB 1SQVE 2E76D 1O7GA 1L0NE 3H1JE 4U3FE 2NUKA 1NDOA 1PPJE 1PP9E 2JZAA 2DE5D 4QUPA 3GTEA 1NU1E 1VCKA 2A06E 1SQBE 2CKFA 4HM3A 2JO6A 4NBGD 2YIUC 1O7WA 1EZVE 1NYKA 2XSHA 1KYOE 3VCPA 3L73E 3GL2A 3H1HE 4HM8A 2ZT9D 3L74E 1ULIA 3D89A 2HMMA 2GBWA 2Q3WA 4NBAD 1UUWA 1KB9E 2QJPC 1SQQE 4HM2A 4H13D 5AEUA 4NBBD 5KKZC 3TGUE 3EN1A 1O7MA 4NB9D 2FYNC 4HM6A 1NTZE 4OGQD 3VMID 1ULJA 4HJLA 4QDFA 1P84E 4EMJB 2E4PA 3FOUA 3N0QA 1SJGA 4NB8D 5CXMA 2YFIA 1O7HA 2YFLA 3L70E 4HM7A 1BE3E 2HMOA 2HMNA 3DQYA 3BCCE 4HM4A 1NTKE 4HM0A 2NVEA 1L0LE 2BMQA 4NBCD 1EG9A 4NBHD 2HMJA 3GTSA 2B24A 3L71E 2XR8A 2HMLA 2BMRA 3GB4A 5BOKA 3GL0A 4PV1D 2XRXA 4HM5A 2NVGA 3GKEA 2E4QA 4P1CH 3VCAA 2DE6D 2YFJA 3VMHD 5HL4A 2BCCE 4QURA 3CXHE 3H1LE 1FQTA 4H44D 4QDCA 3H1KE 1JM1A 3C0DA 3GZYA 1SQPE 2E75D 2GBXA 3L72E 2QJKC 4H0LD 4NBDD 3AZCA 3VMGD 4QDFB 1ZRTE 2IBZE
chains in the Genus database with same CATH topology
2HMKA 3EQQA 4QUQA 3GCEA 5KLIC 2E74D 1SQXE 1O7PA 3H1IE 2QJYC 4PD4E 2ZYLA 1G8JB 2FYUE 3GOBA 1BCCE 1RFSA 4NBFD 4QCKA 4AIVA 2NVFA 5KLVE 1NTME 4P1BH 1WQLA 2B1XA 4NBED 4QDDA 1VM9A 2QPZA 2YVJB 1UUVA 2NWFA 2BMOA 3CWBE 1O7NA 1RIEA 2NUMA 2XSOA 3CX5E 4HM1A 2D2CD 5AEWA 3GZXA 2I7FA 4HKVA 1Q90C 1VF5D 3L75E 4AAYB 2DE7D 1G8KB 1SQVE 2E76D 1O7GA 1L0NE 3H1JE 4U3FE 2NUKA 1NDOA 1PPJE 1PP9E 2JZAA 2DE5D 4QUPA 3GTEA 1NU1E 1VCKA 2A06E 1SQBE 2CKFA 4HM3A 2JO6A 4NBGD 2YIUC 1O7WA 1EZVE 1NYKA 2XSHA 1KYOE 3VCPA 3L73E 3GL2A 3H1HE 4HM8A 2ZT9D 3L74E 1ULIA 3D89A 2HMMA 2GBWA 2Q3WA 4NBAD 1UUWA 1KB9E 2QJPC 1SQQE 4HM2A 4H13D 5AEUA 4NBBD 5KKZC 3TGUE 3EN1A 1O7MA 4NB9D 2FYNC 4HM6A 1NTZE 4OGQD 3VMID 1ULJA 4HJLA 4QDFA 1P84E 4EMJB 2E4PA 3FOUA 3N0QA 1SJGA 4NB8D 5CXMA 2YFIA 1O7HA 2YFLA 3L70E 4HM7A 1BE3E 2HMOA 2HMNA 3DQYA 3BCCE 4HM4A 1NTKE 4HM0A 2NVEA 1L0LE 2BMQA 4NBCD 1EG9A 4NBHD 2HMJA 3GTSA 2B24A 3L71E 2XR8A 2HMLA 2BMRA 3GB4A 5BOKA 3GL0A 4PV1D 2XRXA 4HM5A 2NVGA 3GKEA 2E4QA 4P1CH 3VCAA 2DE6D 2YFJA 3VMHD 5HL4A 2BCCE 4QURA 3CXHE 3H1LE 1FQTA 4H44D 4QDCA 3H1KE 1JM1A 3C0DA 3GZYA 1SQPE 2E75D 2GBXA 3L72E 2QJKC 4H0LD 4NBDD 3AZCA 3VMGD 4QDFB 1ZRTE 2IBZE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HMK A;  3EQQ A;  4QUQ A;  3GCE A;  5KLI C;  2E74 D;  1SQX E;  1O7P A;  3H1I E;  2QJY C;  4PD4 E;  2ZYL A;  1G8J B;  2FYU E;  3GOB A;  1BCC E;  1RFS A;  4NBF D;  4QCK A;  4AIV A;  2NVF A;  5KLV E;  1NTM E;  4P1B H;  1WQL A;  2B1X A;  4NBE D;  4QDD A;  1VM9 A;  2QPZ A;  2YVJ B;  1UUV A;  2NWF A;  2BMO A;  3CWB E;  1O7N A;  1RIE A;  2NUM A;  2XSO A;  3CX5 E;  4HM1 A;  2D2C D;  5AEW A;  3GZX A;  2I7F A;  4HKV A;  1Q90 C;  1VF5 D;  3L75 E;  4AAY B;  2DE7 D;  1G8K B;  1SQV E;  2E76 D;  1O7G A;  1L0N E;  3H1J E;  4U3F E;  2NUK A;  1NDO A;  1PPJ E;  1PP9 E;  2JZA A;  2DE5 D;  4QUP A;  3GTE A;  1NU1 E;  1VCK A;  2A06 E;  1SQB E;  2CKF A;  4HM3 A;  2JO6 A;  4NBG D;  2YIU C;  1O7W A;  1EZV E;  1NYK A;  2XSH A;  1KYO E;  3VCP A;  3L73 E;  3GL2 A;  3H1H E;  4HM8 A;  2ZT9 D;  3L74 E;  1ULI A;  3D89 A;  2HMM A;  2GBW A;  2Q3W A;  4NBA D;  1UUW A;  1KB9 E;  2QJP C;  1SQQ E;  4HM2 A;  4H13 D;  5AEU A;  4NBB D;  5KKZ C;  3TGU E;  3EN1 A;  1O7M A;  4NB9 D;  2FYN C;  4HM6 A;  1NTZ E;  4OGQ D;  3VMI D;  1ULJ A;  4HJL A;  4QDF A;  1P84 E;  4EMJ B;  2E4P A;  3FOU A;  3N0Q A;  1SJG A;  4NB8 D;  5CXM A;  2YFI A;  1O7H A;  2YFL A;  3L70 E;  4HM7 A;  1BE3 E;  2HMO A;  2HMN A;  3DQY A;  3BCC E;  4HM4 A;  1NTK E;  4HM0 A;  2NVE A;  1L0L E;  2BMQ A;  4NBC D;  1EG9 A;  4NBH D;  2HMJ A;  3GTS A;  2B24 A;  3L71 E;  2XR8 A;  2HML A;  2BMR A;  3GB4 A;  5BOK A;  3GL0 A;  4PV1 D;  2XRX A;  4HM5 A;  2NVG A;  3GKE A;  2E4Q A;  4P1C H;  3VCA A;  2DE6 D;  2YFJ A;  3VMH D;  5HL4 A;  2BCC E;  4QUR A;  3CXH E;  3H1L E;  1FQT A;  4H44 D;  4QDC A;  3H1K E;  1JM1 A;  3C0D A;  3GZY A;  1SQP E;  2E75 D;  2GBX A;  3L72 E;  2QJK C;  4H0L D;  4NBD D;  3AZC A;  3VMG D;  4QDF B;  1ZRT E;  2IBZ E; 
#chains in the Genus database with same CATH topology
 2HMK A;  3EQQ A;  4QUQ A;  3GCE A;  5KLI C;  2E74 D;  1SQX E;  1O7P A;  3H1I E;  2QJY C;  4PD4 E;  2ZYL A;  1G8J B;  2FYU E;  3GOB A;  1BCC E;  1RFS A;  4NBF D;  4QCK A;  4AIV A;  2NVF A;  5KLV E;  1NTM E;  4P1B H;  1WQL A;  2B1X A;  4NBE D;  4QDD A;  1VM9 A;  2QPZ A;  2YVJ B;  1UUV A;  2NWF A;  2BMO A;  3CWB E;  1O7N A;  1RIE A;  2NUM A;  2XSO A;  3CX5 E;  4HM1 A;  2D2C D;  5AEW A;  3GZX A;  2I7F A;  4HKV A;  1Q90 C;  1VF5 D;  3L75 E;  4AAY B;  2DE7 D;  1G8K B;  1SQV E;  2E76 D;  1O7G A;  1L0N E;  3H1J E;  4U3F E;  2NUK A;  1NDO A;  1PPJ E;  1PP9 E;  2JZA A;  2DE5 D;  4QUP A;  3GTE A;  1NU1 E;  1VCK A;  2A06 E;  1SQB E;  2CKF A;  4HM3 A;  2JO6 A;  4NBG D;  2YIU C;  1O7W A;  1EZV E;  1NYK A;  2XSH A;  1KYO E;  3VCP A;  3L73 E;  3GL2 A;  3H1H E;  4HM8 A;  2ZT9 D;  3L74 E;  1ULI A;  3D89 A;  2HMM A;  2GBW A;  2Q3W A;  4NBA D;  1UUW A;  1KB9 E;  2QJP C;  1SQQ E;  4HM2 A;  4H13 D;  5AEU A;  4NBB D;  5KKZ C;  3TGU E;  3EN1 A;  1O7M A;  4NB9 D;  2FYN C;  4HM6 A;  1NTZ E;  4OGQ D;  3VMI D;  1ULJ A;  4HJL A;  4QDF A;  1P84 E;  4EMJ B;  2E4P A;  3FOU A;  3N0Q A;  1SJG A;  4NB8 D;  5CXM A;  2YFI A;  1O7H A;  2YFL A;  3L70 E;  4HM7 A;  1BE3 E;  2HMO A;  2HMN A;  3DQY A;  3BCC E;  4HM4 A;  1NTK E;  4HM0 A;  2NVE A;  1L0L E;  2BMQ A;  4NBC D;  1EG9 A;  4NBH D;  2HMJ A;  3GTS A;  2B24 A;  3L71 E;  2XR8 A;  2HML A;  2BMR A;  3GB4 A;  5BOK A;  3GL0 A;  4PV1 D;  2XRX A;  4HM5 A;  2NVG A;  3GKE A;  2E4Q A;  4P1C H;  3VCA A;  2DE6 D;  2YFJ A;  3VMH D;  5HL4 A;  2BCC E;  4QUR A;  3CXH E;  3H1L E;  1FQT A;  4H44 D;  4QDC A;  3H1K E;  1JM1 A;  3C0D A;  3GZY A;  1SQP E;  2E75 D;  2GBX A;  3L72 E;  2QJK C;  4H0L D;  4NBD D;  3AZC A;  3VMG D;  4QDF B;  1ZRT E;  2IBZ E; 
#chains in the Genus database with same CATH homology
 2HMK A;  3EQQ A;  4QUQ A;  3GCE A;  5KLI C;  2E74 D;  1SQX E;  1O7P A;  3H1I E;  2QJY C;  4PD4 E;  2ZYL A;  1G8J B;  2FYU E;  3GOB A;  1BCC E;  1RFS A;  4NBF D;  4QCK A;  4AIV A;  2NVF A;  5KLV E;  1NTM E;  4P1B H;  1WQL A;  2B1X A;  4NBE D;  4QDD A;  1VM9 A;  2QPZ A;  2YVJ B;  1UUV A;  2NWF A;  2BMO A;  3CWB E;  1O7N A;  1RIE A;  2NUM A;  2XSO A;  3CX5 E;  4HM1 A;  2D2C D;  5AEW A;  3GZX A;  2I7F A;  4HKV A;  1Q90 C;  1VF5 D;  3L75 E;  4AAY B;  2DE7 D;  1G8K B;  1SQV E;  2E76 D;  1O7G A;  1L0N E;  3H1J E;  4U3F E;  2NUK A;  1NDO A;  1PPJ E;  1PP9 E;  2JZA A;  2DE5 D;  4QUP A;  3GTE A;  1NU1 E;  1VCK A;  2A06 E;  1SQB E;  2CKF A;  4HM3 A;  2JO6 A;  4NBG D;  2YIU C;  1O7W A;  1EZV E;  1NYK A;  2XSH A;  1KYO E;  3VCP A;  3L73 E;  3GL2 A;  3H1H E;  4HM8 A;  2ZT9 D;  3L74 E;  1ULI A;  3D89 A;  2HMM A;  2GBW A;  2Q3W A;  4NBA D;  1UUW A;  1KB9 E;  2QJP C;  1SQQ E;  4HM2 A;  4H13 D;  5AEU A;  4NBB D;  5KKZ C;  3TGU E;  3EN1 A;  1O7M A;  4NB9 D;  2FYN C;  4HM6 A;  1NTZ E;  4OGQ D;  3VMI D;  1ULJ A;  4HJL A;  4QDF A;  1P84 E;  4EMJ B;  2E4P A;  3FOU A;  3N0Q A;  1SJG A;  4NB8 D;  5CXM A;  2YFI A;  1O7H A;  2YFL A;  3L70 E;  4HM7 A;  1BE3 E;  2HMO A;  2HMN A;  3DQY A;  3BCC E;  4HM4 A;  1NTK E;  4HM0 A;  2NVE A;  1L0L E;  2BMQ A;  4NBC D;  1EG9 A;  4NBH D;  2HMJ A;  3GTS A;  2B24 A;  3L71 E;  2XR8 A;  2HML A;  2BMR A;  3GB4 A;  5BOK A;  3GL0 A;  4PV1 D;  2XRX A;  4HM5 A;  2NVG A;  3GKE A;  2E4Q A;  4P1C H;  3VCA A;  2DE6 D;  2YFJ A;  3VMH D;  5HL4 A;  2BCC E;  4QUR A;  3CXH E;  3H1L E;  1FQT A;  4H44 D;  4QDC A;  3H1K E;  1JM1 A;  3C0D A;  3GZY A;  1SQP E;  2E75 D;  2GBX A;  3L72 E;  2QJK C;  4H0L D;  4NBD D;  3AZC A;  3VMG D;  4QDF B;  1ZRT E;  2IBZ E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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