3C0DA

Crystal structure of the putative nitrite reductase nadph (small subunit) oxidoreductase protein q87hb1. northeast structural genomics consortium target vpr162
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
109
structure length
109
Chain Sequence
LTKVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSGQCLEDEAHCLKTWRVTVDDNQVCYLAKEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
source organism Vibrio parahaemolyticus rimd 2210633
publication title Crystal structure of the putative nitrite reductase NADPH (small subunit) oxidoreductase protein Q87HB1.
rcsb
molecule keywords Putative nitrite reductase NADPH (Small subunit) oxidoreduct
total genus 14
structure length 109
sequence length 109
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2008-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13806 Rieske_2 Rieske-like [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3c0dA00
5BOKA 4NBAD 1NTZE 1UUVA 3GOBA 2XR8A 2I7FA 2NWFA 2YIUC 3TGUE 3GCEA 4NBHD 4NBCD 4EMJB 2DE6D 1VF5D 4AAYB 1Q90C 1O7NA 5HL4A 4PD4E 3H1LE 5CXMA 1FQTA 1NDOA 1ULJA 3FOUA 3C0DA 4QUPA 1PPJE 3GB4A 4HKVA 1BCCE 4P1CH 2B24A 3VMHD 4NBGD 4NB9D 2YFJA 2B1XA 3D89A 3CWBE 3L74E 2QJPC 4HM5A 2ZYLA 1ZRTE 2CKFA 2HMMA 3GTEA 3GZXA 2GBWA 3EN1A 1O7PA 1KB9E 2BMQA 4HM4A 2D2CD 1P84E 3GTSA 1G8JB 2QPZA 3CXHE 2Q3WA 4QDFA 4NBFD 4QCKA 1O7GA 4HJLA 5AEWA 2GBXA 2NVFA 2E76D 1JM1A 2DE5D 2FYNC 2E4PA 1BE3E 3DQYA 2QJYC 3VMGD 1SQQE 3VCAA 1SQPE 2BMOA 4QDDA 3BCCE 2NUKA 1VM9A 2E4QA 2XSHA 1NTKE 1SQXE 2HMKA 2JO6A 4QUQA 4QDCA 2A06E 4H0LD 5KKZC 3L75E 3GZYA 5AEUA 1SQVE 2HMJA 2HMOA 2YFLA 2JZAA 2XRXA 2YVJB 3EQQA 3GL0A 4HM1A 1WQLA 3VMID 1EG9A 1O7HA 3H1IE 4H44D 2BMRA 1EZVE 1SQBE 2E74D 4HM7A 1RIEA 3L70E 2DE7D 2YFIA 1ULIA 4H13D 1G8KB 4AIVA 2HMLA 2HMNA 4NB8D 3L71E 1KYOE 4NBBD 3GL2A 2NVEA 3N0QA 4U3FE 4HM0A 4NBDD 1O7WA 3VCPA 2XSOA 2ZT9D 3AZCA 4QURA 1PP9E 1L0NE 3GKEA 4P1BH 3H1KE 1UUWA 5KLIC 3L72E 1NTME 2FYUE 4HM3A 1O7MA 2BCCE 3CX5E 3L73E 4HM2A 4HM6A 3H1HE 4NBED 1VCKA 2NVGA 5KLVE 1SJGA 2E75D 1RFSA 4HM8A 2IBZE 2QJKC 1NU1E 4PV1D 2NUMA 3H1JE 1L0LE 4QDFB 1NYKA 4OGQD
chains in the Genus database with same CATH superfamily
5BOKA 4NBAD 1NTZE 1UUVA 3GOBA 2XR8A 2I7FA 2NWFA 2YIUC 3TGUE 3GCEA 4NBHD 4NBCD 4EMJB 2DE6D 1VF5D 4AAYB 1Q90C 1O7NA 5HL4A 4PD4E 3H1LE 5CXMA 1FQTA 1NDOA 1ULJA 3FOUA 3C0DA 4QUPA 1PPJE 3GB4A 4HKVA 1BCCE 4P1CH 2B24A 3VMHD 4NBGD 4NB9D 2YFJA 2B1XA 3D89A 3CWBE 3L74E 2QJPC 4HM5A 2ZYLA 1ZRTE 2CKFA 2HMMA 3GTEA 3GZXA 2GBWA 3EN1A 1O7PA 1KB9E 2BMQA 4HM4A 2D2CD 1P84E 3GTSA 1G8JB 2QPZA 3CXHE 2Q3WA 4QDFA 4NBFD 4QCKA 1O7GA 4HJLA 5AEWA 2GBXA 2NVFA 2E76D 1JM1A 2DE5D 2FYNC 2E4PA 1BE3E 3DQYA 2QJYC 3VMGD 1SQQE 3VCAA 1SQPE 2BMOA 4QDDA 3BCCE 2NUKA 1VM9A 2E4QA 2XSHA 1NTKE 1SQXE 2HMKA 2JO6A 4QUQA 4QDCA 2A06E 4H0LD 5KKZC 3L75E 3GZYA 5AEUA 1SQVE 2HMJA 2HMOA 2YFLA 2JZAA 2XRXA 2YVJB 3EQQA 3GL0A 4HM1A 1WQLA 3VMID 1EG9A 1O7HA 3H1IE 4H44D 2BMRA 1EZVE 1SQBE 2E74D 4HM7A 1RIEA 3L70E 2DE7D 2YFIA 1ULIA 4H13D 1G8KB 4AIVA 2HMLA 2HMNA 4NB8D 3L71E 1KYOE 4NBBD 3GL2A 2NVEA 3N0QA 4U3FE 4HM0A 4NBDD 1O7WA 3VCPA 2XSOA 2ZT9D 3AZCA 4QURA 1PP9E 1L0NE 3GKEA 4P1BH 3H1KE 1UUWA 5KLIC 3L72E 1NTME 2FYUE 4HM3A 1O7MA 2BCCE 3CX5E 3L73E 4HM2A 4HM6A 3H1HE 4NBED 1VCKA 2NVGA 5KLVE 1SJGA 2E75D 1RFSA 4HM8A 2IBZE 2QJKC 1NU1E 4PV1D 2NUMA 3H1JE 1L0LE 4QDFB 1NYKA 4OGQD
chains in the Genus database with same CATH topology
5BOKA 4NBAD 1NTZE 1UUVA 3GOBA 2XR8A 2I7FA 2NWFA 2YIUC 3TGUE 3GCEA 4NBHD 4NBCD 4EMJB 2DE6D 1VF5D 4AAYB 1Q90C 1O7NA 5HL4A 4PD4E 3H1LE 5CXMA 1FQTA 1NDOA 1ULJA 3FOUA 3C0DA 4QUPA 1PPJE 3GB4A 4HKVA 1BCCE 4P1CH 2B24A 3VMHD 4NBGD 4NB9D 2YFJA 2B1XA 3D89A 3CWBE 3L74E 2QJPC 4HM5A 2ZYLA 1ZRTE 2CKFA 2HMMA 3GTEA 3GZXA 2GBWA 3EN1A 1O7PA 1KB9E 2BMQA 4HM4A 2D2CD 1P84E 3GTSA 1G8JB 2QPZA 3CXHE 2Q3WA 4QDFA 4NBFD 4QCKA 1O7GA 4HJLA 5AEWA 2GBXA 2NVFA 2E76D 1JM1A 2DE5D 2FYNC 2E4PA 1BE3E 3DQYA 2QJYC 3VMGD 1SQQE 3VCAA 1SQPE 2BMOA 4QDDA 3BCCE 2NUKA 1VM9A 2E4QA 2XSHA 1NTKE 1SQXE 2HMKA 2JO6A 4QUQA 4QDCA 2A06E 4H0LD 5KKZC 3L75E 3GZYA 5AEUA 1SQVE 2HMJA 2HMOA 2YFLA 2JZAA 2XRXA 2YVJB 3EQQA 3GL0A 4HM1A 1WQLA 3VMID 1EG9A 1O7HA 3H1IE 4H44D 2BMRA 1EZVE 1SQBE 2E74D 4HM7A 1RIEA 3L70E 2DE7D 2YFIA 1ULIA 4H13D 1G8KB 4AIVA 2HMLA 2HMNA 4NB8D 3L71E 1KYOE 4NBBD 3GL2A 2NVEA 3N0QA 4U3FE 4HM0A 4NBDD 1O7WA 3VCPA 2XSOA 2ZT9D 3AZCA 4QURA 1PP9E 1L0NE 3GKEA 4P1BH 3H1KE 1UUWA 5KLIC 3L72E 1NTME 2FYUE 4HM3A 1O7MA 2BCCE 3CX5E 3L73E 4HM2A 4HM6A 3H1HE 4NBED 1VCKA 2NVGA 5KLVE 1SJGA 2E75D 1RFSA 4HM8A 2IBZE 2QJKC 1NU1E 4PV1D 2NUMA 3H1JE 1L0LE 4QDFB 1NYKA 4OGQD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5BOK A;  4NBA D;  1NTZ E;  1UUV A;  3GOB A;  2XR8 A;  2I7F A;  2NWF A;  2YIU C;  3TGU E;  3GCE A;  4NBH D;  4NBC D;  4EMJ B;  2DE6 D;  1VF5 D;  4AAY B;  1Q90 C;  1O7N A;  5HL4 A;  4PD4 E;  3H1L E;  5CXM A;  1FQT A;  1NDO A;  1ULJ A;  3FOU A;  3C0D A;  4QUP A;  1PPJ E;  3GB4 A;  4HKV A;  1BCC E;  4P1C H;  2B24 A;  3VMH D;  4NBG D;  4NB9 D;  2YFJ A;  2B1X A;  3D89 A;  3CWB E;  3L74 E;  2QJP C;  4HM5 A;  2ZYL A;  1ZRT E;  2CKF A;  2HMM A;  3GTE A;  3GZX A;  2GBW A;  3EN1 A;  1O7P A;  1KB9 E;  2BMQ A;  4HM4 A;  2D2C D;  1P84 E;  3GTS A;  1G8J B;  2QPZ A;  3CXH E;  2Q3W A;  4QDF A;  4NBF D;  4QCK A;  1O7G A;  4HJL A;  5AEW A;  2GBX A;  2NVF A;  2E76 D;  1JM1 A;  2DE5 D;  2FYN C;  2E4P A;  1BE3 E;  3DQY A;  2QJY C;  3VMG D;  1SQQ E;  3VCA A;  1SQP E;  2BMO A;  4QDD A;  3BCC E;  2NUK A;  1VM9 A;  2E4Q A;  2XSH A;  1NTK E;  1SQX E;  2HMK A;  2JO6 A;  4QUQ A;  4QDC A;  2A06 E;  4H0L D;  5KKZ C;  3L75 E;  3GZY A;  5AEU A;  1SQV E;  2HMJ A;  2HMO A;  2YFL A;  2JZA A;  2XRX A;  2YVJ B;  3EQQ A;  3GL0 A;  4HM1 A;  1WQL A;  3VMI D;  1EG9 A;  1O7H A;  3H1I E;  4H44 D;  2BMR A;  1EZV E;  1SQB E;  2E74 D;  4HM7 A;  1RIE A;  3L70 E;  2DE7 D;  2YFI A;  1ULI A;  4H13 D;  1G8K B;  4AIV A;  2HML A;  2HMN A;  4NB8 D;  3L71 E;  1KYO E;  4NBB D;  3GL2 A;  2NVE A;  3N0Q A;  4U3F E;  4HM0 A;  4NBD D;  1O7W A;  3VCP A;  2XSO A;  2ZT9 D;  3AZC A;  4QUR A;  1PP9 E;  1L0N E;  3GKE A;  4P1B H;  3H1K E;  1UUW A;  5KLI C;  3L72 E;  1NTM E;  2FYU E;  4HM3 A;  1O7M A;  2BCC E;  3CX5 E;  3L73 E;  4HM2 A;  4HM6 A;  3H1H E;  4NBE D;  1VCK A;  2NVG A;  5KLV E;  1SJG A;  2E75 D;  1RFS A;  4HM8 A;  2IBZ E;  2QJK C;  1NU1 E;  4PV1 D;  2NUM A;  3H1J E;  1L0L E;  4QDF B;  1NYK A;  4OGQ D; 
#chains in the Genus database with same CATH topology
 5BOK A;  4NBA D;  1NTZ E;  1UUV A;  3GOB A;  2XR8 A;  2I7F A;  2NWF A;  2YIU C;  3TGU E;  3GCE A;  4NBH D;  4NBC D;  4EMJ B;  2DE6 D;  1VF5 D;  4AAY B;  1Q90 C;  1O7N A;  5HL4 A;  4PD4 E;  3H1L E;  5CXM A;  1FQT A;  1NDO A;  1ULJ A;  3FOU A;  3C0D A;  4QUP A;  1PPJ E;  3GB4 A;  4HKV A;  1BCC E;  4P1C H;  2B24 A;  3VMH D;  4NBG D;  4NB9 D;  2YFJ A;  2B1X A;  3D89 A;  3CWB E;  3L74 E;  2QJP C;  4HM5 A;  2ZYL A;  1ZRT E;  2CKF A;  2HMM A;  3GTE A;  3GZX A;  2GBW A;  3EN1 A;  1O7P A;  1KB9 E;  2BMQ A;  4HM4 A;  2D2C D;  1P84 E;  3GTS A;  1G8J B;  2QPZ A;  3CXH E;  2Q3W A;  4QDF A;  4NBF D;  4QCK A;  1O7G A;  4HJL A;  5AEW A;  2GBX A;  2NVF A;  2E76 D;  1JM1 A;  2DE5 D;  2FYN C;  2E4P A;  1BE3 E;  3DQY A;  2QJY C;  3VMG D;  1SQQ E;  3VCA A;  1SQP E;  2BMO A;  4QDD A;  3BCC E;  2NUK A;  1VM9 A;  2E4Q A;  2XSH A;  1NTK E;  1SQX E;  2HMK A;  2JO6 A;  4QUQ A;  4QDC A;  2A06 E;  4H0L D;  5KKZ C;  3L75 E;  3GZY A;  5AEU A;  1SQV E;  2HMJ A;  2HMO A;  2YFL A;  2JZA A;  2XRX A;  2YVJ B;  3EQQ A;  3GL0 A;  4HM1 A;  1WQL A;  3VMI D;  1EG9 A;  1O7H A;  3H1I E;  4H44 D;  2BMR A;  1EZV E;  1SQB E;  2E74 D;  4HM7 A;  1RIE A;  3L70 E;  2DE7 D;  2YFI A;  1ULI A;  4H13 D;  1G8K B;  4AIV A;  2HML A;  2HMN A;  4NB8 D;  3L71 E;  1KYO E;  4NBB D;  3GL2 A;  2NVE A;  3N0Q A;  4U3F E;  4HM0 A;  4NBD D;  1O7W A;  3VCP A;  2XSO A;  2ZT9 D;  3AZC A;  4QUR A;  1PP9 E;  1L0N E;  3GKE A;  4P1B H;  3H1K E;  1UUW A;  5KLI C;  3L72 E;  1NTM E;  2FYU E;  4HM3 A;  1O7M A;  2BCC E;  3CX5 E;  3L73 E;  4HM2 A;  4HM6 A;  3H1H E;  4NBE D;  1VCK A;  2NVG A;  5KLV E;  1SJG A;  2E75 D;  1RFS A;  4HM8 A;  2IBZ E;  2QJK C;  1NU1 E;  4PV1 D;  2NUM A;  3H1J E;  1L0L E;  4QDF B;  1NYK A;  4OGQ D; 
#chains in the Genus database with same CATH homology
 5BOK A;  4NBA D;  1NTZ E;  1UUV A;  3GOB A;  2XR8 A;  2I7F A;  2NWF A;  2YIU C;  3TGU E;  3GCE A;  4NBH D;  4NBC D;  4EMJ B;  2DE6 D;  1VF5 D;  4AAY B;  1Q90 C;  1O7N A;  5HL4 A;  4PD4 E;  3H1L E;  5CXM A;  1FQT A;  1NDO A;  1ULJ A;  3FOU A;  3C0D A;  4QUP A;  1PPJ E;  3GB4 A;  4HKV A;  1BCC E;  4P1C H;  2B24 A;  3VMH D;  4NBG D;  4NB9 D;  2YFJ A;  2B1X A;  3D89 A;  3CWB E;  3L74 E;  2QJP C;  4HM5 A;  2ZYL A;  1ZRT E;  2CKF A;  2HMM A;  3GTE A;  3GZX A;  2GBW A;  3EN1 A;  1O7P A;  1KB9 E;  2BMQ A;  4HM4 A;  2D2C D;  1P84 E;  3GTS A;  1G8J B;  2QPZ A;  3CXH E;  2Q3W A;  4QDF A;  4NBF D;  4QCK A;  1O7G A;  4HJL A;  5AEW A;  2GBX A;  2NVF A;  2E76 D;  1JM1 A;  2DE5 D;  2FYN C;  2E4P A;  1BE3 E;  3DQY A;  2QJY C;  3VMG D;  1SQQ E;  3VCA A;  1SQP E;  2BMO A;  4QDD A;  3BCC E;  2NUK A;  1VM9 A;  2E4Q A;  2XSH A;  1NTK E;  1SQX E;  2HMK A;  2JO6 A;  4QUQ A;  4QDC A;  2A06 E;  4H0L D;  5KKZ C;  3L75 E;  3GZY A;  5AEU A;  1SQV E;  2HMJ A;  2HMO A;  2YFL A;  2JZA A;  2XRX A;  2YVJ B;  3EQQ A;  3GL0 A;  4HM1 A;  1WQL A;  3VMI D;  1EG9 A;  1O7H A;  3H1I E;  4H44 D;  2BMR A;  1EZV E;  1SQB E;  2E74 D;  4HM7 A;  1RIE A;  3L70 E;  2DE7 D;  2YFI A;  1ULI A;  4H13 D;  1G8K B;  4AIV A;  2HML A;  2HMN A;  4NB8 D;  3L71 E;  1KYO E;  4NBB D;  3GL2 A;  2NVE A;  3N0Q A;  4U3F E;  4HM0 A;  4NBD D;  1O7W A;  3VCP A;  2XSO A;  2ZT9 D;  3AZC A;  4QUR A;  1PP9 E;  1L0N E;  3GKE A;  4P1B H;  3H1K E;  1UUW A;  5KLI C;  3L72 E;  1NTM E;  2FYU E;  4HM3 A;  1O7M A;  2BCC E;  3CX5 E;  3L73 E;  4HM2 A;  4HM6 A;  3H1H E;  4NBE D;  1VCK A;  2NVG A;  5KLV E;  1SJG A;  2E75 D;  1RFS A;  4HM8 A;  2IBZ E;  2QJK C;  1NU1 E;  4PV1 D;  2NUM A;  3H1J E;  1L0L E;  4QDF B;  1NYK A;  4OGQ D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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