4HM4A

Naphthalene 1,2-dioxygenase bound to indan
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
446
structure length
446
Chain Sequence
b'MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Naphthalene 1,2-Dioxygenase bound to indan
rcsb
molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
source organism Pseudomonas sp. c18
molecule tags Oxidoreductase/oxidoreductase inhibitor
total genus 163
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm4A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm4A01
2A06E 3CXHE 1NTKE 3GL0A 4NB9A 4HM3A 2HMJA 1UUVA 4H13D 5HL4A 1EZVE 2NUKA 2E74D 1NDOA 2NVGA 2DE5A 1G8JB 1O7WA 3H1HE 2ZYLA 3EN1A 3VMHA 3D89A 4NBHA 1RFSA 4NB8A 3L73E 2CKFA 3FOUA 2E4PA 3GL2A 4HM6A 2B24A 3L75E 4PD4E 2JZAA 1WW9A 2HMNA 2YFLA 4QDCA 4U3FE 4NBGA 1ULIA 3VMIA 2QPZA 3GCEA 2NVFA 1NYKA 2NUMA 2HMOA 1BCCE 3C0DA 4QDDA 2YIUC 2B1XA 3GKEA 4H44D 4HM2A 2XSOA 2QJKC 2XR8A 1PP9E 2XRXA 1NU1E 4NB8D 3VMGD 4AAYB 2DE7A 4EMJB 3H1JE 3GTSA 1PPJE 3H1IE 1G8KB 3TGUE 4HM8A 1KYOE 2NVEA 1FQTA 2FYNC 1O7GA 4NBFA 2IBZE 4HM0A 2I7FA 1SQQE 2DE6D 2HMLA 4QCKA 4NBDA 1ULJA 1Z03A 5BOKA 2BCCE 2GBXA 4OGQD 4NBBA 2JO6A 4PV1D 4NBAA 4NB9D 4QUQA 4QDFB 4NBEA 1O7HA 1SJGA 1KB9E 3GKQA 1O7MA 2GBWA 2DE7D 2YFIA 3L72E 4QDFA 4QUPA 1VCKA 2DE5D 1L0LE 2E4QA 1UUWA 4HJLA 3VMHD 5KKZC 2FYUE 4NBHD 3H1KE 4H0LD 4HM7A 4HM4A 1NTZE 3AZCA 1RIEA 2YFJA 2HMKA 2BMOA 3GZYA 1O7PA 4NBGD 1P84E 3VCAA 3VMID 1EG9A 1JM1A 1O7NA 1SQBE 3H1LE 4P1CH 4AIVA 3DQYA 1Z02A 2QJPC 1BE3E 3CX5E 2BMQA 5AEWA 2XSHA 4HM5A 4HM1A 1Z01A 3VCPA 2BMRA 2NWFA 3GB4A 5CXMA 2HMMA 4QURA 1VM9A 3EQQA 4NBCA 1NTME 5KLIC 2D2CD 2Q3WA 3L71E 3VMGA 5AEUA 1L0NE 4HKVA 1ZRTE 3GZXA 2E75D 3CWBE 4NBFD 1SQPE 4NBDD 3L70E 1SQVE 3GOBA 4P1BH 3N0QA 4NBBD 1VF5D 1Q90C 1WQLA 2QJYC 4NBAD 5KLVE 2YVJB 1SQXE 3BCCE 4NBED 3L74E 2DE6A 3GCFA 2E76D 3GTEA 4NBCD 2ZT9D
chains in the Genus database with same CATH superfamily
2A06E 3CXHE 1NTKE 3GL0A 4NB9A 4HM3A 2HMJA 1UUVA 4H13D 5HL4A 1EZVE 2NUKA 2E74D 1NDOA 2NVGA 2DE5A 1G8JB 1O7WA 3H1HE 2ZYLA 3EN1A 3VMHA 3D89A 4NBHA 1RFSA 4NB8A 3L73E 2CKFA 3FOUA 2E4PA 3GL2A 4HM6A 2B24A 3L75E 4PD4E 2JZAA 1WW9A 2HMNA 2YFLA 4QDCA 4U3FE 4NBGA 1ULIA 3VMIA 2QPZA 3GCEA 2NVFA 1NYKA 2NUMA 2HMOA 1BCCE 3C0DA 4QDDA 2YIUC 2B1XA 3GKEA 4H44D 4HM2A 2XSOA 2QJKC 2XR8A 1PP9E 2XRXA 1NU1E 4NB8D 3VMGD 4AAYB 2DE7A 4EMJB 3H1JE 3GTSA 1PPJE 3H1IE 1G8KB 3TGUE 4HM8A 1KYOE 2NVEA 1FQTA 2FYNC 1O7GA 4NBFA 2IBZE 4HM0A 2I7FA 1SQQE 2DE6D 2HMLA 4QCKA 4NBDA 1ULJA 1Z03A 5BOKA 2BCCE 2GBXA 4OGQD 4NBBA 2JO6A 4PV1D 4NBAA 4NB9D 4QUQA 4QDFB 4NBEA 1O7HA 1SJGA 1KB9E 3GKQA 1O7MA 2GBWA 2DE7D 2YFIA 3L72E 4QDFA 4QUPA 1VCKA 2DE5D 1L0LE 2E4QA 1UUWA 4HJLA 3VMHD 5KKZC 2FYUE 4NBHD 3H1KE 4H0LD 4HM7A 4HM4A 1NTZE 3AZCA 1RIEA 2YFJA 2HMKA 2BMOA 3GZYA 1O7PA 4NBGD 1P84E 3VCAA 3VMID 1EG9A 1JM1A 1O7NA 1SQBE 3H1LE 4P1CH 4AIVA 3DQYA 1Z02A 2QJPC 1BE3E 3CX5E 2BMQA 5AEWA 2XSHA 4HM5A 4HM1A 1Z01A 3VCPA 2BMRA 2NWFA 3GB4A 5CXMA 2HMMA 4QURA 1VM9A 3EQQA 4NBCA 1NTME 5KLIC 2D2CD 2Q3WA 3L71E 3VMGA 5AEUA 1L0NE 4HKVA 1ZRTE 3GZXA 2E75D 3CWBE 4NBFD 1SQPE 4NBDD 3L70E 1SQVE 3GOBA 4P1BH 3N0QA 4NBBD 1VF5D 1Q90C 1WQLA 2QJYC 4NBAD 5KLVE 2YVJB 1SQXE 3BCCE 4NBED 3L74E 2DE6A 3GCFA 2E76D 3GTEA 4NBCD 2ZT9D
chains in the Genus database with same CATH topology
2A06E 3CXHE 1NTKE 3GL0A 4NB9A 4HM3A 2HMJA 1UUVA 4H13D 5HL4A 1EZVE 2NUKA 2E74D 1NDOA 2NVGA 2DE5A 1G8JB 1O7WA 3H1HE 2ZYLA 3EN1A 3VMHA 3D89A 4NBHA 1RFSA 4NB8A 3L73E 2CKFA 3FOUA 2E4PA 3GL2A 4HM6A 2B24A 3L75E 4PD4E 2JZAA 1WW9A 2HMNA 2YFLA 4QDCA 4U3FE 4NBGA 1ULIA 3VMIA 2QPZA 3GCEA 2NVFA 1NYKA 2NUMA 2HMOA 1BCCE 3C0DA 4QDDA 2YIUC 2B1XA 3GKEA 4H44D 4HM2A 2XSOA 2QJKC 2XR8A 1PP9E 2XRXA 1NU1E 4NB8D 3VMGD 4AAYB 2DE7A 4EMJB 3H1JE 3GTSA 1PPJE 3H1IE 1G8KB 3TGUE 4HM8A 1KYOE 2NVEA 1FQTA 2FYNC 1O7GA 4NBFA 2IBZE 4HM0A 2I7FA 1SQQE 2DE6D 2HMLA 4QCKA 4NBDA 1ULJA 1Z03A 5BOKA 2BCCE 2GBXA 4OGQD 4NBBA 2JO6A 4PV1D 4NBAA 4NB9D 4QUQA 4QDFB 4NBEA 1O7HA 1SJGA 1KB9E 3GKQA 1O7MA 2GBWA 2DE7D 2YFIA 3L72E 4QDFA 4QUPA 1VCKA 2DE5D 1L0LE 2E4QA 1UUWA 4HJLA 3VMHD 5KKZC 2FYUE 4NBHD 3H1KE 4H0LD 4HM7A 4HM4A 1NTZE 3AZCA 1RIEA 2YFJA 2HMKA 2BMOA 3GZYA 1O7PA 4NBGD 1P84E 3VCAA 3VMID 1EG9A 1JM1A 1O7NA 1SQBE 3H1LE 4P1CH 4AIVA 3DQYA 1Z02A 2QJPC 1BE3E 3CX5E 2BMQA 5AEWA 2XSHA 4HM5A 4HM1A 1Z01A 3VCPA 2BMRA 2NWFA 3GB4A 5CXMA 2HMMA 4QURA 1VM9A 3EQQA 4NBCA 1NTME 5KLIC 2D2CD 2Q3WA 3L71E 3VMGA 5AEUA 1L0NE 4HKVA 1ZRTE 3GZXA 2E75D 3CWBE 4NBFD 1SQPE 4NBDD 3L70E 1SQVE 3GOBA 4P1BH 3N0QA 4NBBD 1VF5D 1Q90C 1WQLA 2QJYC 4NBAD 5KLVE 2YVJB 1SQXE 3BCCE 4NBED 3L74E 2DE6A 3GCFA 2E76D 3GTEA 4NBCD 2ZT9D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2A06 E;  3CXH E;  1NTK E;  3GL0 A;  4NB9 A;  4HM3 A;  2HMJ A;  1UUV A;  4H13 D;  5HL4 A;  1EZV E;  2NUK A;  2E74 D;  1NDO A;  2NVG A;  2DE5 A;  1G8J B;  1O7W A;  3H1H E;  2ZYL A;  3EN1 A;  3VMH A;  3D89 A;  4NBH A;  1RFS A;  4NB8 A;  3L73 E;  2CKF A;  3FOU A;  2E4P A;  3GL2 A;  4HM6 A;  2B24 A;  3L75 E;  4PD4 E;  2JZA A;  1WW9 A;  2HMN A;  2YFL A;  4QDC A;  4U3F E;  4NBG A;  1ULI A;  3VMI A;  2QPZ A;  3GCE A;  2NVF A;  1NYK A;  2NUM A;  2HMO A;  1BCC E;  3C0D A;  4QDD A;  2YIU C;  2B1X A;  3GKE A;  4H44 D;  4HM2 A;  2XSO A;  2QJK C;  2XR8 A;  1PP9 E;  2XRX A;  1NU1 E;  4NB8 D;  3VMG D;  4AAY B;  2DE7 A;  4EMJ B;  3H1J E;  3GTS A;  1PPJ E;  3H1I E;  1G8K B;  3TGU E;  4HM8 A;  1KYO E;  2NVE A;  1FQT A;  2FYN C;  1O7G A;  4NBF A;  2IBZ E;  4HM0 A;  2I7F A;  1SQQ E;  2DE6 D;  2HML A;  4QCK A;  4NBD A;  1ULJ A;  1Z03 A;  5BOK A;  2BCC E;  2GBX A;  4OGQ D;  4NBB A;  2JO6 A;  4PV1 D;  4NBA A;  4NB9 D;  4QUQ A;  4QDF B;  4NBE A;  1O7H A;  1SJG A;  1KB9 E;  3GKQ A;  1O7M A;  2GBW A;  2DE7 D;  2YFI A;  3L72 E;  4QDF A;  4QUP A;  1VCK A;  2DE5 D;  1L0L E;  2E4Q A;  1UUW A;  4HJL A;  3VMH D;  5KKZ C;  2FYU E;  4NBH D;  3H1K E;  4H0L D;  4HM7 A;  4HM4 A;  1NTZ E;  3AZC A;  1RIE A;  2YFJ A;  2HMK A;  2BMO A;  3GZY A;  1O7P A;  4NBG D;  1P84 E;  3VCA A;  3VMI D;  1EG9 A;  1JM1 A;  1O7N A;  1SQB E;  3H1L E;  4P1C H;  4AIV A;  3DQY A;  1Z02 A;  2QJP C;  1BE3 E;  3CX5 E;  2BMQ A;  5AEW A;  2XSH A;  4HM5 A;  4HM1 A;  1Z01 A;  3VCP A;  2BMR A;  2NWF A;  3GB4 A;  5CXM A;  2HMM A;  4QUR A;  1VM9 A;  3EQQ A;  4NBC A;  1NTM E;  5KLI C;  2D2C D;  2Q3W A;  3L71 E;  3VMG A;  5AEU A;  1L0N E;  4HKV A;  1ZRT E;  3GZX A;  2E75 D;  3CWB E;  4NBF D;  1SQP E;  4NBD D;  3L70 E;  1SQV E;  3GOB A;  4P1B H;  3N0Q A;  4NBB D;  1VF5 D;  1Q90 C;  1WQL A;  2QJY C;  4NBA D;  5KLV E;  2YVJ B;  1SQX E;  3BCC E;  4NBE D;  3L74 E;  2DE6 A;  3GCF A;  2E76 D;  3GTE A;  4NBC D;  2ZT9 D; 
#chains in the Genus database with same CATH topology
 2A06 E;  3CXH E;  1NTK E;  3GL0 A;  4NB9 A;  4HM3 A;  2HMJ A;  1UUV A;  4H13 D;  5HL4 A;  1EZV E;  2NUK A;  2E74 D;  1NDO A;  2NVG A;  2DE5 A;  1G8J B;  1O7W A;  3H1H E;  2ZYL A;  3EN1 A;  3VMH A;  3D89 A;  4NBH A;  1RFS A;  4NB8 A;  3L73 E;  2CKF A;  3FOU A;  2E4P A;  3GL2 A;  4HM6 A;  2B24 A;  3L75 E;  4PD4 E;  2JZA A;  1WW9 A;  2HMN A;  2YFL A;  4QDC A;  4U3F E;  4NBG A;  1ULI A;  3VMI A;  2QPZ A;  3GCE A;  2NVF A;  1NYK A;  2NUM A;  2HMO A;  1BCC E;  3C0D A;  4QDD A;  2YIU C;  2B1X A;  3GKE A;  4H44 D;  4HM2 A;  2XSO A;  2QJK C;  2XR8 A;  1PP9 E;  2XRX A;  1NU1 E;  4NB8 D;  3VMG D;  4AAY B;  2DE7 A;  4EMJ B;  3H1J E;  3GTS A;  1PPJ E;  3H1I E;  1G8K B;  3TGU E;  4HM8 A;  1KYO E;  2NVE A;  1FQT A;  2FYN C;  1O7G A;  4NBF A;  2IBZ E;  4HM0 A;  2I7F A;  1SQQ E;  2DE6 D;  2HML A;  4QCK A;  4NBD A;  1ULJ A;  1Z03 A;  5BOK A;  2BCC E;  2GBX A;  4OGQ D;  4NBB A;  2JO6 A;  4PV1 D;  4NBA A;  4NB9 D;  4QUQ A;  4QDF B;  4NBE A;  1O7H A;  1SJG A;  1KB9 E;  3GKQ A;  1O7M A;  2GBW A;  2DE7 D;  2YFI A;  3L72 E;  4QDF A;  4QUP A;  1VCK A;  2DE5 D;  1L0L E;  2E4Q A;  1UUW A;  4HJL A;  3VMH D;  5KKZ C;  2FYU E;  4NBH D;  3H1K E;  4H0L D;  4HM7 A;  4HM4 A;  1NTZ E;  3AZC A;  1RIE A;  2YFJ A;  2HMK A;  2BMO A;  3GZY A;  1O7P A;  4NBG D;  1P84 E;  3VCA A;  3VMI D;  1EG9 A;  1JM1 A;  1O7N A;  1SQB E;  3H1L E;  4P1C H;  4AIV A;  3DQY A;  1Z02 A;  2QJP C;  1BE3 E;  3CX5 E;  2BMQ A;  5AEW A;  2XSH A;  4HM5 A;  4HM1 A;  1Z01 A;  3VCP A;  2BMR A;  2NWF A;  3GB4 A;  5CXM A;  2HMM A;  4QUR A;  1VM9 A;  3EQQ A;  4NBC A;  1NTM E;  5KLI C;  2D2C D;  2Q3W A;  3L71 E;  3VMG A;  5AEU A;  1L0N E;  4HKV A;  1ZRT E;  3GZX A;  2E75 D;  3CWB E;  4NBF D;  1SQP E;  4NBD D;  3L70 E;  1SQV E;  3GOB A;  4P1B H;  3N0Q A;  4NBB D;  1VF5 D;  1Q90 C;  1WQL A;  2QJY C;  4NBA D;  5KLV E;  2YVJ B;  1SQX E;  3BCC E;  4NBE D;  3L74 E;  2DE6 A;  3GCF A;  2E76 D;  3GTE A;  4NBC D;  2ZT9 D; 
#chains in the Genus database with same CATH homology
 2A06 E;  3CXH E;  1NTK E;  3GL0 A;  4NB9 A;  4HM3 A;  2HMJ A;  1UUV A;  4H13 D;  5HL4 A;  1EZV E;  2NUK A;  2E74 D;  1NDO A;  2NVG A;  2DE5 A;  1G8J B;  1O7W A;  3H1H E;  2ZYL A;  3EN1 A;  3VMH A;  3D89 A;  4NBH A;  1RFS A;  4NB8 A;  3L73 E;  2CKF A;  3FOU A;  2E4P A;  3GL2 A;  4HM6 A;  2B24 A;  3L75 E;  4PD4 E;  2JZA A;  1WW9 A;  2HMN A;  2YFL A;  4QDC A;  4U3F E;  4NBG A;  1ULI A;  3VMI A;  2QPZ A;  3GCE A;  2NVF A;  1NYK A;  2NUM A;  2HMO A;  1BCC E;  3C0D A;  4QDD A;  2YIU C;  2B1X A;  3GKE A;  4H44 D;  4HM2 A;  2XSO A;  2QJK C;  2XR8 A;  1PP9 E;  2XRX A;  1NU1 E;  4NB8 D;  3VMG D;  4AAY B;  2DE7 A;  4EMJ B;  3H1J E;  3GTS A;  1PPJ E;  3H1I E;  1G8K B;  3TGU E;  4HM8 A;  1KYO E;  2NVE A;  1FQT A;  2FYN C;  1O7G A;  4NBF A;  2IBZ E;  4HM0 A;  2I7F A;  1SQQ E;  2DE6 D;  2HML A;  4QCK A;  4NBD A;  1ULJ A;  1Z03 A;  5BOK A;  2BCC E;  2GBX A;  4OGQ D;  4NBB A;  2JO6 A;  4PV1 D;  4NBA A;  4NB9 D;  4QUQ A;  4QDF B;  4NBE A;  1O7H A;  1SJG A;  1KB9 E;  3GKQ A;  1O7M A;  2GBW A;  2DE7 D;  2YFI A;  3L72 E;  4QDF A;  4QUP A;  1VCK A;  2DE5 D;  1L0L E;  2E4Q A;  1UUW A;  4HJL A;  3VMH D;  5KKZ C;  2FYU E;  4NBH D;  3H1K E;  4H0L D;  4HM7 A;  4HM4 A;  1NTZ E;  3AZC A;  1RIE A;  2YFJ A;  2HMK A;  2BMO A;  3GZY A;  1O7P A;  4NBG D;  1P84 E;  3VCA A;  3VMI D;  1EG9 A;  1JM1 A;  1O7N A;  1SQB E;  3H1L E;  4P1C H;  4AIV A;  3DQY A;  1Z02 A;  2QJP C;  1BE3 E;  3CX5 E;  2BMQ A;  5AEW A;  2XSH A;  4HM5 A;  4HM1 A;  1Z01 A;  3VCP A;  2BMR A;  2NWF A;  3GB4 A;  5CXM A;  2HMM A;  4QUR A;  1VM9 A;  3EQQ A;  4NBC A;  1NTM E;  5KLI C;  2D2C D;  2Q3W A;  3L71 E;  3VMG A;  5AEU A;  1L0N E;  4HKV A;  1ZRT E;  3GZX A;  2E75 D;  3CWB E;  4NBF D;  1SQP E;  4NBD D;  3L70 E;  1SQV E;  3GOB A;  4P1B H;  3N0Q A;  4NBB D;  1VF5 D;  1Q90 C;  1WQL A;  2QJY C;  4NBA D;  5KLV E;  2YVJ B;  1SQX E;  3BCC E;  4NBE D;  3L74 E;  2DE6 A;  3GCF A;  2E76 D;  3GTE A;  4NBC D;  2ZT9 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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