4HM4A

Naphthalene 1,2-dioxygenase bound to indan
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Naphthalene 1,2-Dioxygenase bound to indan
rcsb
source organism Pseudomonas sp. c18
molecule tags Oxidoreductase/oxidoreductase inhibitor
molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
total genus 163
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm4A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm4A01
3GL2A 1RFSA 1KB9E 3VMGD 1ULIA 4NBAA 4NBED 1BCCE 2YVJB 1WW9A 2XSHA 1NDOA 4QDCA 2NUMA 1G8KB 4U3FE 1VM9A 2QJYC 2B1XA 1SQBE 5HL4A 4HM0A 1SJGA 1SQQE 2E75D 2YFLA 1O7MA 3H1JE 3EQQA 3GZXA 4AIVA 4NBBA 1Z03A 4NB8A 2QJKC 4QCKA 1WQLA 2E4PA 3CXHE 1NTZE 4AAYB 2IBZE 2E4QA 1O7PA 1O7NA 2QJPC 4NBAD 2BMRA 4NB9A 2NWFA 1ULJA 1EG9A 1NTKE 3L73E 3TGUE 3N0QA 1UUWA 1FQTA 1NTME 3L74E 3VMID 4NBDD 3D89A 1L0LE 2YFIA 3H1HE 4HJLA 4NB8D 2DE6A 4NBBD 4NBHA 3GCEA 1RIEA 3H1KE 1O7HA 2XR8A 1P84E 4NBGD 2E76D 3GOBA 5KKZC 4H13D 3VCAA 4QDFA 4PD4E 2DE5D 1NYKA 1O7WA 4NB9D 4QUQA 2NVFA 1JM1A 1SQVE 2Q3WA 4P1BH 4OGQD 4QUPA 4HM2A 3CWBE 4HM8A 3VCPA 1BE3E 2D2CD 1VCKA 1VF5D 1G8JB 3CX5E 3BCCE 3GKEA 4H0LD 1Z02A 4NBGA 2I7FA 2GBXA 4PV1D 3GB4A 2NVGA 1O7GA 3VMIA 2YFJA 2HMNA 4HM7A 4NBDA 2HMMA 2FYUE 2FYNC 4QDFB 2BMOA 3GTEA 1UUVA 2HMKA 1NU1E 2BCCE 2XSOA 5AEUA 1SQPE 2NVEA 4HM6A 2QPZA 4NBFA 3FOUA 4P1CH 4H44D 4HM3A 3L70E 2NUKA 1L0NE 1Z01A 1PP9E 5CXMA 3VMGA 2JO6A 2DE5A 3GCFA 1ZRTE 3C0DA 3VMHA 3GTSA 2ZYLA 4HKVA 5KLIC 3VMHD 2HMOA 2DE7D 4NBCD 1Q90C 2DE6D 2ZT9D 3L75E 4NBHD 3GKQA 2HMJA 5AEWA 5BOKA 4NBEA 3H1IE 3EN1A 2JZAA 3L72E 4HM5A 2DE7A 4NBCA 3AZCA 4QDDA 1SQXE 1PPJE 3H1LE 2A06E 2YIUC 4HM4A 3DQYA 5KLVE 2GBWA 4QURA 1EZVE 3L71E 2CKFA 4EMJB 2E74D 1KYOE 4HM1A 3GZYA 2XRXA 2HMLA 3GL0A 4NBFD 2B24A 2BMQA
chains in the Genus database with same CATH superfamily
3GL2A 1RFSA 1KB9E 3VMGD 1ULIA 4NBAA 4NBED 1BCCE 2YVJB 1WW9A 2XSHA 1NDOA 4QDCA 2NUMA 1G8KB 4U3FE 1VM9A 2QJYC 2B1XA 1SQBE 5HL4A 4HM0A 1SJGA 1SQQE 2E75D 2YFLA 1O7MA 3H1JE 3EQQA 3GZXA 4AIVA 4NBBA 1Z03A 4NB8A 2QJKC 4QCKA 1WQLA 2E4PA 3CXHE 1NTZE 4AAYB 2IBZE 2E4QA 1O7PA 1O7NA 2QJPC 4NBAD 2BMRA 4NB9A 2NWFA 1ULJA 1EG9A 1NTKE 3L73E 3TGUE 3N0QA 1UUWA 1FQTA 1NTME 3L74E 3VMID 4NBDD 3D89A 1L0LE 2YFIA 3H1HE 4HJLA 4NB8D 2DE6A 4NBBD 4NBHA 3GCEA 1RIEA 3H1KE 1O7HA 2XR8A 1P84E 4NBGD 2E76D 3GOBA 5KKZC 4H13D 3VCAA 4QDFA 4PD4E 2DE5D 1NYKA 1O7WA 4NB9D 4QUQA 2NVFA 1JM1A 1SQVE 2Q3WA 4P1BH 4OGQD 4QUPA 4HM2A 3CWBE 4HM8A 3VCPA 1BE3E 2D2CD 1VCKA 1VF5D 1G8JB 3CX5E 3BCCE 3GKEA 4H0LD 1Z02A 4NBGA 2I7FA 2GBXA 4PV1D 3GB4A 2NVGA 1O7GA 3VMIA 2YFJA 2HMNA 4HM7A 4NBDA 2HMMA 2FYUE 2FYNC 4QDFB 2BMOA 3GTEA 1UUVA 2HMKA 1NU1E 2BCCE 2XSOA 5AEUA 1SQPE 2NVEA 4HM6A 2QPZA 4NBFA 3FOUA 4P1CH 4H44D 4HM3A 3L70E 2NUKA 1L0NE 1Z01A 1PP9E 5CXMA 3VMGA 2JO6A 2DE5A 3GCFA 1ZRTE 3C0DA 3VMHA 3GTSA 2ZYLA 4HKVA 5KLIC 3VMHD 2HMOA 2DE7D 4NBCD 1Q90C 2DE6D 2ZT9D 3L75E 4NBHD 3GKQA 2HMJA 5AEWA 5BOKA 4NBEA 3H1IE 3EN1A 2JZAA 3L72E 4HM5A 2DE7A 4NBCA 3AZCA 4QDDA 1SQXE 1PPJE 3H1LE 2A06E 2YIUC 4HM4A 3DQYA 5KLVE 2GBWA 4QURA 1EZVE 3L71E 2CKFA 4EMJB 2E74D 1KYOE 4HM1A 3GZYA 2XRXA 2HMLA 3GL0A 4NBFD 2B24A 2BMQA
chains in the Genus database with same CATH topology
3GL2A 1RFSA 1KB9E 3VMGD 1ULIA 4NBAA 4NBED 1BCCE 2YVJB 1WW9A 2XSHA 1NDOA 4QDCA 2NUMA 1G8KB 4U3FE 1VM9A 2QJYC 2B1XA 1SQBE 5HL4A 4HM0A 1SJGA 1SQQE 2E75D 2YFLA 1O7MA 3H1JE 3EQQA 3GZXA 4AIVA 4NBBA 1Z03A 4NB8A 2QJKC 4QCKA 1WQLA 2E4PA 3CXHE 1NTZE 4AAYB 2IBZE 2E4QA 1O7PA 1O7NA 2QJPC 4NBAD 2BMRA 4NB9A 2NWFA 1ULJA 1EG9A 1NTKE 3L73E 3TGUE 3N0QA 1UUWA 1FQTA 1NTME 3L74E 3VMID 4NBDD 3D89A 1L0LE 2YFIA 3H1HE 4HJLA 4NB8D 2DE6A 4NBBD 4NBHA 3GCEA 1RIEA 3H1KE 1O7HA 2XR8A 1P84E 4NBGD 2E76D 3GOBA 5KKZC 4H13D 3VCAA 4QDFA 4PD4E 2DE5D 1NYKA 1O7WA 4NB9D 4QUQA 2NVFA 1JM1A 1SQVE 2Q3WA 4P1BH 4OGQD 4QUPA 4HM2A 3CWBE 4HM8A 3VCPA 1BE3E 2D2CD 1VCKA 1VF5D 1G8JB 3CX5E 3BCCE 3GKEA 4H0LD 1Z02A 4NBGA 2I7FA 2GBXA 4PV1D 3GB4A 2NVGA 1O7GA 3VMIA 2YFJA 2HMNA 4HM7A 4NBDA 2HMMA 2FYUE 2FYNC 4QDFB 2BMOA 3GTEA 1UUVA 2HMKA 1NU1E 2BCCE 2XSOA 5AEUA 1SQPE 2NVEA 4HM6A 2QPZA 4NBFA 3FOUA 4P1CH 4H44D 4HM3A 3L70E 2NUKA 1L0NE 1Z01A 1PP9E 5CXMA 3VMGA 2JO6A 2DE5A 3GCFA 1ZRTE 3C0DA 3VMHA 3GTSA 2ZYLA 4HKVA 5KLIC 3VMHD 2HMOA 2DE7D 4NBCD 1Q90C 2DE6D 2ZT9D 3L75E 4NBHD 3GKQA 2HMJA 5AEWA 5BOKA 4NBEA 3H1IE 3EN1A 2JZAA 3L72E 4HM5A 2DE7A 4NBCA 3AZCA 4QDDA 1SQXE 1PPJE 3H1LE 2A06E 2YIUC 4HM4A 3DQYA 5KLVE 2GBWA 4QURA 1EZVE 3L71E 2CKFA 4EMJB 2E74D 1KYOE 4HM1A 3GZYA 2XRXA 2HMLA 3GL0A 4NBFD 2B24A 2BMQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GL2 A;  1RFS A;  1KB9 E;  3VMG D;  1ULI A;  4NBA A;  4NBE D;  1BCC E;  2YVJ B;  1WW9 A;  2XSH A;  1NDO A;  4QDC A;  2NUM A;  1G8K B;  4U3F E;  1VM9 A;  2QJY C;  2B1X A;  1SQB E;  5HL4 A;  4HM0 A;  1SJG A;  1SQQ E;  2E75 D;  2YFL A;  1O7M A;  3H1J E;  3EQQ A;  3GZX A;  4AIV A;  4NBB A;  1Z03 A;  4NB8 A;  2QJK C;  4QCK A;  1WQL A;  2E4P A;  3CXH E;  1NTZ E;  4AAY B;  2IBZ E;  2E4Q A;  1O7P A;  1O7N A;  2QJP C;  4NBA D;  2BMR A;  4NB9 A;  2NWF A;  1ULJ A;  1EG9 A;  1NTK E;  3L73 E;  3TGU E;  3N0Q A;  1UUW A;  1FQT A;  1NTM E;  3L74 E;  3VMI D;  4NBD D;  3D89 A;  1L0L E;  2YFI A;  3H1H E;  4HJL A;  4NB8 D;  2DE6 A;  4NBB D;  4NBH A;  3GCE A;  1RIE A;  3H1K E;  1O7H A;  2XR8 A;  1P84 E;  4NBG D;  2E76 D;  3GOB A;  5KKZ C;  4H13 D;  3VCA A;  4QDF A;  4PD4 E;  2DE5 D;  1NYK A;  1O7W A;  4NB9 D;  4QUQ A;  2NVF A;  1JM1 A;  1SQV E;  2Q3W A;  4P1B H;  4OGQ D;  4QUP A;  4HM2 A;  3CWB E;  4HM8 A;  3VCP A;  1BE3 E;  2D2C D;  1VCK A;  1VF5 D;  1G8J B;  3CX5 E;  3BCC E;  3GKE A;  4H0L D;  1Z02 A;  4NBG A;  2I7F A;  2GBX A;  4PV1 D;  3GB4 A;  2NVG A;  1O7G A;  3VMI A;  2YFJ A;  2HMN A;  4HM7 A;  4NBD A;  2HMM A;  2FYU E;  2FYN C;  4QDF B;  2BMO A;  3GTE A;  1UUV A;  2HMK A;  1NU1 E;  2BCC E;  2XSO A;  5AEU A;  1SQP E;  2NVE A;  4HM6 A;  2QPZ A;  4NBF A;  3FOU A;  4P1C H;  4H44 D;  4HM3 A;  3L70 E;  2NUK A;  1L0N E;  1Z01 A;  1PP9 E;  5CXM A;  3VMG A;  2JO6 A;  2DE5 A;  3GCF A;  1ZRT E;  3C0D A;  3VMH A;  3GTS A;  2ZYL A;  4HKV A;  5KLI C;  3VMH D;  2HMO A;  2DE7 D;  4NBC D;  1Q90 C;  2DE6 D;  2ZT9 D;  3L75 E;  4NBH D;  3GKQ A;  2HMJ A;  5AEW A;  5BOK A;  4NBE A;  3H1I E;  3EN1 A;  2JZA A;  3L72 E;  4HM5 A;  2DE7 A;  4NBC A;  3AZC A;  4QDD A;  1SQX E;  1PPJ E;  3H1L E;  2A06 E;  2YIU C;  4HM4 A;  3DQY A;  5KLV E;  2GBW A;  4QUR A;  1EZV E;  3L71 E;  2CKF A;  4EMJ B;  2E74 D;  1KYO E;  4HM1 A;  3GZY A;  2XRX A;  2HML A;  3GL0 A;  4NBF D;  2B24 A;  2BMQ A; 
#chains in the Genus database with same CATH topology
 3GL2 A;  1RFS A;  1KB9 E;  3VMG D;  1ULI A;  4NBA A;  4NBE D;  1BCC E;  2YVJ B;  1WW9 A;  2XSH A;  1NDO A;  4QDC A;  2NUM A;  1G8K B;  4U3F E;  1VM9 A;  2QJY C;  2B1X A;  1SQB E;  5HL4 A;  4HM0 A;  1SJG A;  1SQQ E;  2E75 D;  2YFL A;  1O7M A;  3H1J E;  3EQQ A;  3GZX A;  4AIV A;  4NBB A;  1Z03 A;  4NB8 A;  2QJK C;  4QCK A;  1WQL A;  2E4P A;  3CXH E;  1NTZ E;  4AAY B;  2IBZ E;  2E4Q A;  1O7P A;  1O7N A;  2QJP C;  4NBA D;  2BMR A;  4NB9 A;  2NWF A;  1ULJ A;  1EG9 A;  1NTK E;  3L73 E;  3TGU E;  3N0Q A;  1UUW A;  1FQT A;  1NTM E;  3L74 E;  3VMI D;  4NBD D;  3D89 A;  1L0L E;  2YFI A;  3H1H E;  4HJL A;  4NB8 D;  2DE6 A;  4NBB D;  4NBH A;  3GCE A;  1RIE A;  3H1K E;  1O7H A;  2XR8 A;  1P84 E;  4NBG D;  2E76 D;  3GOB A;  5KKZ C;  4H13 D;  3VCA A;  4QDF A;  4PD4 E;  2DE5 D;  1NYK A;  1O7W A;  4NB9 D;  4QUQ A;  2NVF A;  1JM1 A;  1SQV E;  2Q3W A;  4P1B H;  4OGQ D;  4QUP A;  4HM2 A;  3CWB E;  4HM8 A;  3VCP A;  1BE3 E;  2D2C D;  1VCK A;  1VF5 D;  1G8J B;  3CX5 E;  3BCC E;  3GKE A;  4H0L D;  1Z02 A;  4NBG A;  2I7F A;  2GBX A;  4PV1 D;  3GB4 A;  2NVG A;  1O7G A;  3VMI A;  2YFJ A;  2HMN A;  4HM7 A;  4NBD A;  2HMM A;  2FYU E;  2FYN C;  4QDF B;  2BMO A;  3GTE A;  1UUV A;  2HMK A;  1NU1 E;  2BCC E;  2XSO A;  5AEU A;  1SQP E;  2NVE A;  4HM6 A;  2QPZ A;  4NBF A;  3FOU A;  4P1C H;  4H44 D;  4HM3 A;  3L70 E;  2NUK A;  1L0N E;  1Z01 A;  1PP9 E;  5CXM A;  3VMG A;  2JO6 A;  2DE5 A;  3GCF A;  1ZRT E;  3C0D A;  3VMH A;  3GTS A;  2ZYL A;  4HKV A;  5KLI C;  3VMH D;  2HMO A;  2DE7 D;  4NBC D;  1Q90 C;  2DE6 D;  2ZT9 D;  3L75 E;  4NBH D;  3GKQ A;  2HMJ A;  5AEW A;  5BOK A;  4NBE A;  3H1I E;  3EN1 A;  2JZA A;  3L72 E;  4HM5 A;  2DE7 A;  4NBC A;  3AZC A;  4QDD A;  1SQX E;  1PPJ E;  3H1L E;  2A06 E;  2YIU C;  4HM4 A;  3DQY A;  5KLV E;  2GBW A;  4QUR A;  1EZV E;  3L71 E;  2CKF A;  4EMJ B;  2E74 D;  1KYO E;  4HM1 A;  3GZY A;  2XRX A;  2HML A;  3GL0 A;  4NBF D;  2B24 A;  2BMQ A; 
#chains in the Genus database with same CATH homology
 3GL2 A;  1RFS A;  1KB9 E;  3VMG D;  1ULI A;  4NBA A;  4NBE D;  1BCC E;  2YVJ B;  1WW9 A;  2XSH A;  1NDO A;  4QDC A;  2NUM A;  1G8K B;  4U3F E;  1VM9 A;  2QJY C;  2B1X A;  1SQB E;  5HL4 A;  4HM0 A;  1SJG A;  1SQQ E;  2E75 D;  2YFL A;  1O7M A;  3H1J E;  3EQQ A;  3GZX A;  4AIV A;  4NBB A;  1Z03 A;  4NB8 A;  2QJK C;  4QCK A;  1WQL A;  2E4P A;  3CXH E;  1NTZ E;  4AAY B;  2IBZ E;  2E4Q A;  1O7P A;  1O7N A;  2QJP C;  4NBA D;  2BMR A;  4NB9 A;  2NWF A;  1ULJ A;  1EG9 A;  1NTK E;  3L73 E;  3TGU E;  3N0Q A;  1UUW A;  1FQT A;  1NTM E;  3L74 E;  3VMI D;  4NBD D;  3D89 A;  1L0L E;  2YFI A;  3H1H E;  4HJL A;  4NB8 D;  2DE6 A;  4NBB D;  4NBH A;  3GCE A;  1RIE A;  3H1K E;  1O7H A;  2XR8 A;  1P84 E;  4NBG D;  2E76 D;  3GOB A;  5KKZ C;  4H13 D;  3VCA A;  4QDF A;  4PD4 E;  2DE5 D;  1NYK A;  1O7W A;  4NB9 D;  4QUQ A;  2NVF A;  1JM1 A;  1SQV E;  2Q3W A;  4P1B H;  4OGQ D;  4QUP A;  4HM2 A;  3CWB E;  4HM8 A;  3VCP A;  1BE3 E;  2D2C D;  1VCK A;  1VF5 D;  1G8J B;  3CX5 E;  3BCC E;  3GKE A;  4H0L D;  1Z02 A;  4NBG A;  2I7F A;  2GBX A;  4PV1 D;  3GB4 A;  2NVG A;  1O7G A;  3VMI A;  2YFJ A;  2HMN A;  4HM7 A;  4NBD A;  2HMM A;  2FYU E;  2FYN C;  4QDF B;  2BMO A;  3GTE A;  1UUV A;  2HMK A;  1NU1 E;  2BCC E;  2XSO A;  5AEU A;  1SQP E;  2NVE A;  4HM6 A;  2QPZ A;  4NBF A;  3FOU A;  4P1C H;  4H44 D;  4HM3 A;  3L70 E;  2NUK A;  1L0N E;  1Z01 A;  1PP9 E;  5CXM A;  3VMG A;  2JO6 A;  2DE5 A;  3GCF A;  1ZRT E;  3C0D A;  3VMH A;  3GTS A;  2ZYL A;  4HKV A;  5KLI C;  3VMH D;  2HMO A;  2DE7 D;  4NBC D;  1Q90 C;  2DE6 D;  2ZT9 D;  3L75 E;  4NBH D;  3GKQ A;  2HMJ A;  5AEW A;  5BOK A;  4NBE A;  3H1I E;  3EN1 A;  2JZA A;  3L72 E;  4HM5 A;  2DE7 A;  4NBC A;  3AZC A;  4QDD A;  1SQX E;  1PPJ E;  3H1L E;  2A06 E;  2YIU C;  4HM4 A;  3DQY A;  5KLV E;  2GBW A;  4QUR A;  1EZV E;  3L71 E;  2CKF A;  4EMJ B;  2E74 D;  1KYO E;  4HM1 A;  3GZY A;  2XRX A;  2HML A;  3GL0 A;  4NBF D;  2B24 A;  2BMQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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