4HM4A

Naphthalene 1,2-dioxygenase bound to indan
Total Genus 163
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase/oxidoreductase inhibitor
molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
publication title Naphthalene 1,2-Dioxygenase bound to indan
rcsb
source organism Pseudomonas sp. c18
total genus 163
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm4A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm4A01
1Z03A 2Q3WA 2YFLA 1WQLA 1P84E 1Q90C 4NBFA 1EG9A 1L0LE 2HMOA 2DE6A 2JO6A 1SJGA 1O7MA 5AEUA 3C0DA 3GCFA 4HM4A 2E75D 2ZYLA 5HL4A 4NBHD 2QJKC 4NBDD 2NUMA 1Z02A 4QUPA 4P1BH 2XR8A 1KYOE 2XSOA 4QCKA 2BMOA 3GB4A 4HM5A 1SQQE 4HM8A 1ZRTE 3L71E 5BOKA 3CX5E 4H44D 5KLVE 1BCCE 1VCKA 4NB9A 4AAYB 1ULIA 4HM2A 1L0NE 4NBFD 2E76D 2DE6D 2XRXA 4QURA 3VMHA 4NB8A 3TGUE 1PP9E 3EQQA 5AEWA 1O7PA 2E74D 4NBGA 4QUQA 1NTKE 1NU1E 2QPZA 1O7NA 1NTME 3CWBE 1VM9A 2BCCE 2DE5A 3VCPA 4NB9D 2CKFA 3BCCE 4H13D 3VCAA 2BMQA 4OGQD 3VMIA 1NYKA 3L73E 3VMHD 3GTEA 2YFJA 4NB8D 5KKZC 3GCEA 2XSHA 4QDFB 1KB9E 2FYUE 4HM1A 3CXHE 1G8KB 4HJLA 4NBGD 3VMGA 2A06E 2D2CD 2QJYC 4NBEA 3N0QA 3EN1A 2HMKA 2DE5D 2B1XA 2GBXA 2HMMA 3L72E 3DQYA 4QDCA 2DE7A 2NUKA 4U3FE 1VF5D 3VMID 1O7WA 4NBCA 3L70E 2HMJA 3GL2A 4EMJB 4NBAA 3GZXA 3GZYA 3D89A 1Z01A 1FQTA 4HM0A 2QJPC 1NTZE 4P1CH 3VMGD 1NDOA 1JM1A 5KLIC 4NBED 1BE3E 1G8JB 4HM6A 1WW9A 1SQBE 2YIUC 1O7GA 1O7HA 2FYNC 4PV1D 1SQXE 4QDFA 2DE7D 2NVFA 2E4QA 3AZCA 3H1IE 4HM3A 4HKVA 4NBBD 1PPJE 4NBCD 1SQPE 2HMLA 4NBAD 2YVJB 2BMRA 4PD4E 1EZVE 5CXMA 1SQVE 4NBHA 2ZT9D 2YFIA 2HMNA 4NBBA 1RFSA 1ULJA 1RIEA 1UUWA 2E4PA 3H1LE 4H0LD 2NWFA 2I7FA 4HM7A 2JZAA 3FOUA 3GOBA 3GKEA 3H1JE 3GKQA 4QDDA 3H1KE 2IBZE 4NBDA 2NVGA 2B24A 2NVEA 3GL0A 3GTSA 2GBWA 3L74E 3H1HE 4AIVA 3L75E 1UUVA
chains in the Genus database with same CATH superfamily
1Z03A 2Q3WA 2YFLA 1WQLA 1P84E 1Q90C 4NBFA 1EG9A 1L0LE 2HMOA 2DE6A 2JO6A 1SJGA 1O7MA 5AEUA 3C0DA 3GCFA 4HM4A 2E75D 2ZYLA 5HL4A 4NBHD 2QJKC 4NBDD 2NUMA 1Z02A 4QUPA 4P1BH 2XR8A 1KYOE 2XSOA 4QCKA 2BMOA 3GB4A 4HM5A 1SQQE 4HM8A 1ZRTE 3L71E 5BOKA 3CX5E 4H44D 5KLVE 1BCCE 1VCKA 4NB9A 4AAYB 1ULIA 4HM2A 1L0NE 4NBFD 2E76D 2DE6D 2XRXA 4QURA 3VMHA 4NB8A 3TGUE 1PP9E 3EQQA 5AEWA 1O7PA 2E74D 4NBGA 4QUQA 1NTKE 1NU1E 2QPZA 1O7NA 1NTME 3CWBE 1VM9A 2BCCE 2DE5A 3VCPA 4NB9D 2CKFA 3BCCE 4H13D 3VCAA 2BMQA 4OGQD 3VMIA 1NYKA 3L73E 3VMHD 3GTEA 2YFJA 4NB8D 5KKZC 3GCEA 2XSHA 4QDFB 1KB9E 2FYUE 4HM1A 3CXHE 1G8KB 4HJLA 4NBGD 3VMGA 2A06E 2D2CD 2QJYC 4NBEA 3N0QA 3EN1A 2HMKA 2DE5D 2B1XA 2GBXA 2HMMA 3L72E 3DQYA 4QDCA 2DE7A 2NUKA 4U3FE 1VF5D 3VMID 1O7WA 4NBCA 3L70E 2HMJA 3GL2A 4EMJB 4NBAA 3GZXA 3GZYA 3D89A 1Z01A 1FQTA 4HM0A 2QJPC 1NTZE 4P1CH 3VMGD 1NDOA 1JM1A 5KLIC 4NBED 1BE3E 1G8JB 4HM6A 1WW9A 1SQBE 2YIUC 1O7GA 1O7HA 2FYNC 4PV1D 1SQXE 4QDFA 2DE7D 2NVFA 2E4QA 3AZCA 3H1IE 4HM3A 4HKVA 4NBBD 1PPJE 4NBCD 1SQPE 2HMLA 4NBAD 2YVJB 2BMRA 4PD4E 1EZVE 5CXMA 1SQVE 4NBHA 2ZT9D 2YFIA 2HMNA 4NBBA 1RFSA 1ULJA 1RIEA 1UUWA 2E4PA 3H1LE 4H0LD 2NWFA 2I7FA 4HM7A 2JZAA 3FOUA 3GOBA 3GKEA 3H1JE 3GKQA 4QDDA 3H1KE 2IBZE 4NBDA 2NVGA 2B24A 2NVEA 3GL0A 3GTSA 2GBWA 3L74E 3H1HE 4AIVA 3L75E 1UUVA
chains in the Genus database with same CATH topology
1Z03A 2Q3WA 2YFLA 1WQLA 1P84E 1Q90C 4NBFA 1EG9A 1L0LE 2HMOA 2DE6A 2JO6A 1SJGA 1O7MA 5AEUA 3C0DA 3GCFA 4HM4A 2E75D 2ZYLA 5HL4A 4NBHD 2QJKC 4NBDD 2NUMA 1Z02A 4QUPA 4P1BH 2XR8A 1KYOE 2XSOA 4QCKA 2BMOA 3GB4A 4HM5A 1SQQE 4HM8A 1ZRTE 3L71E 5BOKA 3CX5E 4H44D 5KLVE 1BCCE 1VCKA 4NB9A 4AAYB 1ULIA 4HM2A 1L0NE 4NBFD 2E76D 2DE6D 2XRXA 4QURA 3VMHA 4NB8A 3TGUE 1PP9E 3EQQA 5AEWA 1O7PA 2E74D 4NBGA 4QUQA 1NTKE 1NU1E 2QPZA 1O7NA 1NTME 3CWBE 1VM9A 2BCCE 2DE5A 3VCPA 4NB9D 2CKFA 3BCCE 4H13D 3VCAA 2BMQA 4OGQD 3VMIA 1NYKA 3L73E 3VMHD 3GTEA 2YFJA 4NB8D 5KKZC 3GCEA 2XSHA 4QDFB 1KB9E 2FYUE 4HM1A 3CXHE 1G8KB 4HJLA 4NBGD 3VMGA 2A06E 2D2CD 2QJYC 4NBEA 3N0QA 3EN1A 2HMKA 2DE5D 2B1XA 2GBXA 2HMMA 3L72E 3DQYA 4QDCA 2DE7A 2NUKA 4U3FE 1VF5D 3VMID 1O7WA 4NBCA 3L70E 2HMJA 3GL2A 4EMJB 4NBAA 3GZXA 3GZYA 3D89A 1Z01A 1FQTA 4HM0A 2QJPC 1NTZE 4P1CH 3VMGD 1NDOA 1JM1A 5KLIC 4NBED 1BE3E 1G8JB 4HM6A 1WW9A 1SQBE 2YIUC 1O7GA 1O7HA 2FYNC 4PV1D 1SQXE 4QDFA 2DE7D 2NVFA 2E4QA 3AZCA 3H1IE 4HM3A 4HKVA 4NBBD 1PPJE 4NBCD 1SQPE 2HMLA 4NBAD 2YVJB 2BMRA 4PD4E 1EZVE 5CXMA 1SQVE 4NBHA 2ZT9D 2YFIA 2HMNA 4NBBA 1RFSA 1ULJA 1RIEA 1UUWA 2E4PA 3H1LE 4H0LD 2NWFA 2I7FA 4HM7A 2JZAA 3FOUA 3GOBA 3GKEA 3H1JE 3GKQA 4QDDA 3H1KE 2IBZE 4NBDA 2NVGA 2B24A 2NVEA 3GL0A 3GTSA 2GBWA 3L74E 3H1HE 4AIVA 3L75E 1UUVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Z03 A;  2Q3W A;  2YFL A;  1WQL A;  1P84 E;  1Q90 C;  4NBF A;  1EG9 A;  1L0L E;  2HMO A;  2DE6 A;  2JO6 A;  1SJG A;  1O7M A;  5AEU A;  3C0D A;  3GCF A;  4HM4 A;  2E75 D;  2ZYL A;  5HL4 A;  4NBH D;  2QJK C;  4NBD D;  2NUM A;  1Z02 A;  4QUP A;  4P1B H;  2XR8 A;  1KYO E;  2XSO A;  4QCK A;  2BMO A;  3GB4 A;  4HM5 A;  1SQQ E;  4HM8 A;  1ZRT E;  3L71 E;  5BOK A;  3CX5 E;  4H44 D;  5KLV E;  1BCC E;  1VCK A;  4NB9 A;  4AAY B;  1ULI A;  4HM2 A;  1L0N E;  4NBF D;  2E76 D;  2DE6 D;  2XRX A;  4QUR A;  3VMH A;  4NB8 A;  3TGU E;  1PP9 E;  3EQQ A;  5AEW A;  1O7P A;  2E74 D;  4NBG A;  4QUQ A;  1NTK E;  1NU1 E;  2QPZ A;  1O7N A;  1NTM E;  3CWB E;  1VM9 A;  2BCC E;  2DE5 A;  3VCP A;  4NB9 D;  2CKF A;  3BCC E;  4H13 D;  3VCA A;  2BMQ A;  4OGQ D;  3VMI A;  1NYK A;  3L73 E;  3VMH D;  3GTE A;  2YFJ A;  4NB8 D;  5KKZ C;  3GCE A;  2XSH A;  4QDF B;  1KB9 E;  2FYU E;  4HM1 A;  3CXH E;  1G8K B;  4HJL A;  4NBG D;  3VMG A;  2A06 E;  2D2C D;  2QJY C;  4NBE A;  3N0Q A;  3EN1 A;  2HMK A;  2DE5 D;  2B1X A;  2GBX A;  2HMM A;  3L72 E;  3DQY A;  4QDC A;  2DE7 A;  2NUK A;  4U3F E;  1VF5 D;  3VMI D;  1O7W A;  4NBC A;  3L70 E;  2HMJ A;  3GL2 A;  4EMJ B;  4NBA A;  3GZX A;  3GZY A;  3D89 A;  1Z01 A;  1FQT A;  4HM0 A;  2QJP C;  1NTZ E;  4P1C H;  3VMG D;  1NDO A;  1JM1 A;  5KLI C;  4NBE D;  1BE3 E;  1G8J B;  4HM6 A;  1WW9 A;  1SQB E;  2YIU C;  1O7G A;  1O7H A;  2FYN C;  4PV1 D;  1SQX E;  4QDF A;  2DE7 D;  2NVF A;  2E4Q A;  3AZC A;  3H1I E;  4HM3 A;  4HKV A;  4NBB D;  1PPJ E;  4NBC D;  1SQP E;  2HML A;  4NBA D;  2YVJ B;  2BMR A;  4PD4 E;  1EZV E;  5CXM A;  1SQV E;  4NBH A;  2ZT9 D;  2YFI A;  2HMN A;  4NBB A;  1RFS A;  1ULJ A;  1RIE A;  1UUW A;  2E4P A;  3H1L E;  4H0L D;  2NWF A;  2I7F A;  4HM7 A;  2JZA A;  3FOU A;  3GOB A;  3GKE A;  3H1J E;  3GKQ A;  4QDD A;  3H1K E;  2IBZ E;  4NBD A;  2NVG A;  2B24 A;  2NVE A;  3GL0 A;  3GTS A;  2GBW A;  3L74 E;  3H1H E;  4AIV A;  3L75 E;  1UUV A; 
#chains in the Genus database with same CATH topology
 1Z03 A;  2Q3W A;  2YFL A;  1WQL A;  1P84 E;  1Q90 C;  4NBF A;  1EG9 A;  1L0L E;  2HMO A;  2DE6 A;  2JO6 A;  1SJG A;  1O7M A;  5AEU A;  3C0D A;  3GCF A;  4HM4 A;  2E75 D;  2ZYL A;  5HL4 A;  4NBH D;  2QJK C;  4NBD D;  2NUM A;  1Z02 A;  4QUP A;  4P1B H;  2XR8 A;  1KYO E;  2XSO A;  4QCK A;  2BMO A;  3GB4 A;  4HM5 A;  1SQQ E;  4HM8 A;  1ZRT E;  3L71 E;  5BOK A;  3CX5 E;  4H44 D;  5KLV E;  1BCC E;  1VCK A;  4NB9 A;  4AAY B;  1ULI A;  4HM2 A;  1L0N E;  4NBF D;  2E76 D;  2DE6 D;  2XRX A;  4QUR A;  3VMH A;  4NB8 A;  3TGU E;  1PP9 E;  3EQQ A;  5AEW A;  1O7P A;  2E74 D;  4NBG A;  4QUQ A;  1NTK E;  1NU1 E;  2QPZ A;  1O7N A;  1NTM E;  3CWB E;  1VM9 A;  2BCC E;  2DE5 A;  3VCP A;  4NB9 D;  2CKF A;  3BCC E;  4H13 D;  3VCA A;  2BMQ A;  4OGQ D;  3VMI A;  1NYK A;  3L73 E;  3VMH D;  3GTE A;  2YFJ A;  4NB8 D;  5KKZ C;  3GCE A;  2XSH A;  4QDF B;  1KB9 E;  2FYU E;  4HM1 A;  3CXH E;  1G8K B;  4HJL A;  4NBG D;  3VMG A;  2A06 E;  2D2C D;  2QJY C;  4NBE A;  3N0Q A;  3EN1 A;  2HMK A;  2DE5 D;  2B1X A;  2GBX A;  2HMM A;  3L72 E;  3DQY A;  4QDC A;  2DE7 A;  2NUK A;  4U3F E;  1VF5 D;  3VMI D;  1O7W A;  4NBC A;  3L70 E;  2HMJ A;  3GL2 A;  4EMJ B;  4NBA A;  3GZX A;  3GZY A;  3D89 A;  1Z01 A;  1FQT A;  4HM0 A;  2QJP C;  1NTZ E;  4P1C H;  3VMG D;  1NDO A;  1JM1 A;  5KLI C;  4NBE D;  1BE3 E;  1G8J B;  4HM6 A;  1WW9 A;  1SQB E;  2YIU C;  1O7G A;  1O7H A;  2FYN C;  4PV1 D;  1SQX E;  4QDF A;  2DE7 D;  2NVF A;  2E4Q A;  3AZC A;  3H1I E;  4HM3 A;  4HKV A;  4NBB D;  1PPJ E;  4NBC D;  1SQP E;  2HML A;  4NBA D;  2YVJ B;  2BMR A;  4PD4 E;  1EZV E;  5CXM A;  1SQV E;  4NBH A;  2ZT9 D;  2YFI A;  2HMN A;  4NBB A;  1RFS A;  1ULJ A;  1RIE A;  1UUW A;  2E4P A;  3H1L E;  4H0L D;  2NWF A;  2I7F A;  4HM7 A;  2JZA A;  3FOU A;  3GOB A;  3GKE A;  3H1J E;  3GKQ A;  4QDD A;  3H1K E;  2IBZ E;  4NBD A;  2NVG A;  2B24 A;  2NVE A;  3GL0 A;  3GTS A;  2GBW A;  3L74 E;  3H1H E;  4AIV A;  3L75 E;  1UUV A; 
#chains in the Genus database with same CATH homology
 1Z03 A;  2Q3W A;  2YFL A;  1WQL A;  1P84 E;  1Q90 C;  4NBF A;  1EG9 A;  1L0L E;  2HMO A;  2DE6 A;  2JO6 A;  1SJG A;  1O7M A;  5AEU A;  3C0D A;  3GCF A;  4HM4 A;  2E75 D;  2ZYL A;  5HL4 A;  4NBH D;  2QJK C;  4NBD D;  2NUM A;  1Z02 A;  4QUP A;  4P1B H;  2XR8 A;  1KYO E;  2XSO A;  4QCK A;  2BMO A;  3GB4 A;  4HM5 A;  1SQQ E;  4HM8 A;  1ZRT E;  3L71 E;  5BOK A;  3CX5 E;  4H44 D;  5KLV E;  1BCC E;  1VCK A;  4NB9 A;  4AAY B;  1ULI A;  4HM2 A;  1L0N E;  4NBF D;  2E76 D;  2DE6 D;  2XRX A;  4QUR A;  3VMH A;  4NB8 A;  3TGU E;  1PP9 E;  3EQQ A;  5AEW A;  1O7P A;  2E74 D;  4NBG A;  4QUQ A;  1NTK E;  1NU1 E;  2QPZ A;  1O7N A;  1NTM E;  3CWB E;  1VM9 A;  2BCC E;  2DE5 A;  3VCP A;  4NB9 D;  2CKF A;  3BCC E;  4H13 D;  3VCA A;  2BMQ A;  4OGQ D;  3VMI A;  1NYK A;  3L73 E;  3VMH D;  3GTE A;  2YFJ A;  4NB8 D;  5KKZ C;  3GCE A;  2XSH A;  4QDF B;  1KB9 E;  2FYU E;  4HM1 A;  3CXH E;  1G8K B;  4HJL A;  4NBG D;  3VMG A;  2A06 E;  2D2C D;  2QJY C;  4NBE A;  3N0Q A;  3EN1 A;  2HMK A;  2DE5 D;  2B1X A;  2GBX A;  2HMM A;  3L72 E;  3DQY A;  4QDC A;  2DE7 A;  2NUK A;  4U3F E;  1VF5 D;  3VMI D;  1O7W A;  4NBC A;  3L70 E;  2HMJ A;  3GL2 A;  4EMJ B;  4NBA A;  3GZX A;  3GZY A;  3D89 A;  1Z01 A;  1FQT A;  4HM0 A;  2QJP C;  1NTZ E;  4P1C H;  3VMG D;  1NDO A;  1JM1 A;  5KLI C;  4NBE D;  1BE3 E;  1G8J B;  4HM6 A;  1WW9 A;  1SQB E;  2YIU C;  1O7G A;  1O7H A;  2FYN C;  4PV1 D;  1SQX E;  4QDF A;  2DE7 D;  2NVF A;  2E4Q A;  3AZC A;  3H1I E;  4HM3 A;  4HKV A;  4NBB D;  1PPJ E;  4NBC D;  1SQP E;  2HML A;  4NBA D;  2YVJ B;  2BMR A;  4PD4 E;  1EZV E;  5CXM A;  1SQV E;  4NBH A;  2ZT9 D;  2YFI A;  2HMN A;  4NBB A;  1RFS A;  1ULJ A;  1RIE A;  1UUW A;  2E4P A;  3H1L E;  4H0L D;  2NWF A;  2I7F A;  4HM7 A;  2JZA A;  3FOU A;  3GOB A;  3GKE A;  3H1J E;  3GKQ A;  4QDD A;  3H1K E;  2IBZ E;  4NBD A;  2NVG A;  2B24 A;  2NVE A;  3GL0 A;  3GTS A;  2GBW A;  3L74 E;  3H1H E;  4AIV A;  3L75 E;  1UUV A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...