4HM4A

Naphthalene 1,2-dioxygenase bound to indan
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
446
structure length
446
Chain Sequence
b'MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
publication title Naphthalene 1,2-Dioxygenase bound to indan
rcsb
source organism Pseudomonas sp. c18
molecule tags Oxidoreductase/oxidoreductase inhibitor
total genus 163
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm4A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm4A01
2HMLA 3CXHE 1ZRTE 1SQQE 2B24A 1SQBE 4EMJB 2HMNA 2NWFA 3VCAA 1O7PA 2JZAA 4P1BH 3GCEA 1Z03A 2QJPC 4NBGA 4NBEA 4NB8A 1EG9A 4NBDA 1O7NA 2E76D 3L70E 4NB8D 2NVEA 4U3FE 2DE7D 4AAYB 4NBHA 1NU1E 2I7FA 2ZT9D 3L74E 1L0NE 3D89A 3H1LE 4NBHD 4HM8A 1KB9E 4QDFA 1BE3E 2BMQA 4NBAA 3N0QA 1NTME 2E4PA 1O7HA 3C0DA 3GKEA 2YFJA 1VM9A 4H13D 2DE5A 1O7GA 1G8KB 2GBWA 3GB4A 5CXMA 5HL4A 1G8JB 2BCCE 2DE5D 2E74D 2HMOA 2XSHA 2FYNC 2HMJA 2A06E 4QDFB 3H1IE 4NBCD 1UUWA 2YFLA 1VCKA 2BMOA 1VF5D 4NBBA 3VMHA 2QPZA 2E75D 2DE7A 4NBBD 4QUQA 3VMHD 1Q90C 4HM3A 4QDCA 1SQVE 3L73E 2D2CD 2JO6A 4HM1A 3GTSA 3VCPA 3CX5E 4NBFD 4HM2A 3H1JE 3GL0A 1SJGA 2YIUC 3GZXA 1RFSA 3H1HE 3CWBE 4P1CH 4PD4E 3L75E 1Z02A 5KKZC 1NTZE 3VMGA 3GTEA 3FOUA 1L0LE 1PPJE 4QCKA 3VMGD 4NBCA 3GL2A 1JM1A 1ULIA 2GBXA 3DQYA 1SQPE 2FYUE 2NUMA 5KLVE 1NTKE 2NVFA 2YVJB 4QURA 1WW9A 4NBFA 1O7MA 2NVGA 4PV1D 4QDDA 2DE6D 5KLIC 2E4QA 2HMKA 4NB9D 1O7WA 3BCCE 1WQLA 4OGQD 1Z01A 1RIEA 1P84E 2Q3WA 2IBZE 1FQTA 2ZYLA 3H1KE 2YFIA 4HKVA 2B1XA 1PP9E 1ULJA 3EQQA 1NDOA 4H44D 3GKQA 3EN1A 1SQXE 4HJLA 4QUPA 4HM5A 4HM6A 3GOBA 2NUKA 2BMRA 2QJYC 2QJKC 1BCCE 1NYKA 4NBGD 4NBED 2XRXA 4HM0A 4NBDD 5AEUA 3TGUE 2XR8A 3L72E 3AZCA 1KYOE 2DE6A 1EZVE 4HM7A 4NB9A 2HMMA 2XSOA 3GCFA 3L71E 3GZYA 1UUVA 4AIVA 2CKFA 5AEWA 5BOKA 3VMIA 4H0LD 4NBAD 4HM4A 3VMID
chains in the Genus database with same CATH superfamily
2HMLA 3CXHE 1ZRTE 1SQQE 2B24A 1SQBE 4EMJB 2HMNA 2NWFA 3VCAA 1O7PA 2JZAA 4P1BH 3GCEA 1Z03A 2QJPC 4NBGA 4NBEA 4NB8A 1EG9A 4NBDA 1O7NA 2E76D 3L70E 4NB8D 2NVEA 4U3FE 2DE7D 4AAYB 4NBHA 1NU1E 2I7FA 2ZT9D 3L74E 1L0NE 3D89A 3H1LE 4NBHD 4HM8A 1KB9E 4QDFA 1BE3E 2BMQA 4NBAA 3N0QA 1NTME 2E4PA 1O7HA 3C0DA 3GKEA 2YFJA 1VM9A 4H13D 2DE5A 1O7GA 1G8KB 2GBWA 3GB4A 5CXMA 5HL4A 1G8JB 2BCCE 2DE5D 2E74D 2HMOA 2XSHA 2FYNC 2HMJA 2A06E 4QDFB 3H1IE 4NBCD 1UUWA 2YFLA 1VCKA 2BMOA 1VF5D 4NBBA 3VMHA 2QPZA 2E75D 2DE7A 4NBBD 4QUQA 3VMHD 1Q90C 4HM3A 4QDCA 1SQVE 3L73E 2D2CD 2JO6A 4HM1A 3GTSA 3VCPA 3CX5E 4NBFD 4HM2A 3H1JE 3GL0A 1SJGA 2YIUC 3GZXA 1RFSA 3H1HE 3CWBE 4P1CH 4PD4E 3L75E 1Z02A 5KKZC 1NTZE 3VMGA 3GTEA 3FOUA 1L0LE 1PPJE 4QCKA 3VMGD 4NBCA 3GL2A 1JM1A 1ULIA 2GBXA 3DQYA 1SQPE 2FYUE 2NUMA 5KLVE 1NTKE 2NVFA 2YVJB 4QURA 1WW9A 4NBFA 1O7MA 2NVGA 4PV1D 4QDDA 2DE6D 5KLIC 2E4QA 2HMKA 4NB9D 1O7WA 3BCCE 1WQLA 4OGQD 1Z01A 1RIEA 1P84E 2Q3WA 2IBZE 1FQTA 2ZYLA 3H1KE 2YFIA 4HKVA 2B1XA 1PP9E 1ULJA 3EQQA 1NDOA 4H44D 3GKQA 3EN1A 1SQXE 4HJLA 4QUPA 4HM5A 4HM6A 3GOBA 2NUKA 2BMRA 2QJYC 2QJKC 1BCCE 1NYKA 4NBGD 4NBED 2XRXA 4HM0A 4NBDD 5AEUA 3TGUE 2XR8A 3L72E 3AZCA 1KYOE 2DE6A 1EZVE 4HM7A 4NB9A 2HMMA 2XSOA 3GCFA 3L71E 3GZYA 1UUVA 4AIVA 2CKFA 5AEWA 5BOKA 3VMIA 4H0LD 4NBAD 4HM4A 3VMID
chains in the Genus database with same CATH topology
2HMLA 3CXHE 1ZRTE 1SQQE 2B24A 1SQBE 4EMJB 2HMNA 2NWFA 3VCAA 1O7PA 2JZAA 4P1BH 3GCEA 1Z03A 2QJPC 4NBGA 4NBEA 4NB8A 1EG9A 4NBDA 1O7NA 2E76D 3L70E 4NB8D 2NVEA 4U3FE 2DE7D 4AAYB 4NBHA 1NU1E 2I7FA 2ZT9D 3L74E 1L0NE 3D89A 3H1LE 4NBHD 4HM8A 1KB9E 4QDFA 1BE3E 2BMQA 4NBAA 3N0QA 1NTME 2E4PA 1O7HA 3C0DA 3GKEA 2YFJA 1VM9A 4H13D 2DE5A 1O7GA 1G8KB 2GBWA 3GB4A 5CXMA 5HL4A 1G8JB 2BCCE 2DE5D 2E74D 2HMOA 2XSHA 2FYNC 2HMJA 2A06E 4QDFB 3H1IE 4NBCD 1UUWA 2YFLA 1VCKA 2BMOA 1VF5D 4NBBA 3VMHA 2QPZA 2E75D 2DE7A 4NBBD 4QUQA 3VMHD 1Q90C 4HM3A 4QDCA 1SQVE 3L73E 2D2CD 2JO6A 4HM1A 3GTSA 3VCPA 3CX5E 4NBFD 4HM2A 3H1JE 3GL0A 1SJGA 2YIUC 3GZXA 1RFSA 3H1HE 3CWBE 4P1CH 4PD4E 3L75E 1Z02A 5KKZC 1NTZE 3VMGA 3GTEA 3FOUA 1L0LE 1PPJE 4QCKA 3VMGD 4NBCA 3GL2A 1JM1A 1ULIA 2GBXA 3DQYA 1SQPE 2FYUE 2NUMA 5KLVE 1NTKE 2NVFA 2YVJB 4QURA 1WW9A 4NBFA 1O7MA 2NVGA 4PV1D 4QDDA 2DE6D 5KLIC 2E4QA 2HMKA 4NB9D 1O7WA 3BCCE 1WQLA 4OGQD 1Z01A 1RIEA 1P84E 2Q3WA 2IBZE 1FQTA 2ZYLA 3H1KE 2YFIA 4HKVA 2B1XA 1PP9E 1ULJA 3EQQA 1NDOA 4H44D 3GKQA 3EN1A 1SQXE 4HJLA 4QUPA 4HM5A 4HM6A 3GOBA 2NUKA 2BMRA 2QJYC 2QJKC 1BCCE 1NYKA 4NBGD 4NBED 2XRXA 4HM0A 4NBDD 5AEUA 3TGUE 2XR8A 3L72E 3AZCA 1KYOE 2DE6A 1EZVE 4HM7A 4NB9A 2HMMA 2XSOA 3GCFA 3L71E 3GZYA 1UUVA 4AIVA 2CKFA 5AEWA 5BOKA 3VMIA 4H0LD 4NBAD 4HM4A 3VMID
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HML A;  3CXH E;  1ZRT E;  1SQQ E;  2B24 A;  1SQB E;  4EMJ B;  2HMN A;  2NWF A;  3VCA A;  1O7P A;  2JZA A;  4P1B H;  3GCE A;  1Z03 A;  2QJP C;  4NBG A;  4NBE A;  4NB8 A;  1EG9 A;  4NBD A;  1O7N A;  2E76 D;  3L70 E;  4NB8 D;  2NVE A;  4U3F E;  2DE7 D;  4AAY B;  4NBH A;  1NU1 E;  2I7F A;  2ZT9 D;  3L74 E;  1L0N E;  3D89 A;  3H1L E;  4NBH D;  4HM8 A;  1KB9 E;  4QDF A;  1BE3 E;  2BMQ A;  4NBA A;  3N0Q A;  1NTM E;  2E4P A;  1O7H A;  3C0D A;  3GKE A;  2YFJ A;  1VM9 A;  4H13 D;  2DE5 A;  1O7G A;  1G8K B;  2GBW A;  3GB4 A;  5CXM A;  5HL4 A;  1G8J B;  2BCC E;  2DE5 D;  2E74 D;  2HMO A;  2XSH A;  2FYN C;  2HMJ A;  2A06 E;  4QDF B;  3H1I E;  4NBC D;  1UUW A;  2YFL A;  1VCK A;  2BMO A;  1VF5 D;  4NBB A;  3VMH A;  2QPZ A;  2E75 D;  2DE7 A;  4NBB D;  4QUQ A;  3VMH D;  1Q90 C;  4HM3 A;  4QDC A;  1SQV E;  3L73 E;  2D2C D;  2JO6 A;  4HM1 A;  3GTS A;  3VCP A;  3CX5 E;  4NBF D;  4HM2 A;  3H1J E;  3GL0 A;  1SJG A;  2YIU C;  3GZX A;  1RFS A;  3H1H E;  3CWB E;  4P1C H;  4PD4 E;  3L75 E;  1Z02 A;  5KKZ C;  1NTZ E;  3VMG A;  3GTE A;  3FOU A;  1L0L E;  1PPJ E;  4QCK A;  3VMG D;  4NBC A;  3GL2 A;  1JM1 A;  1ULI A;  2GBX A;  3DQY A;  1SQP E;  2FYU E;  2NUM A;  5KLV E;  1NTK E;  2NVF A;  2YVJ B;  4QUR A;  1WW9 A;  4NBF A;  1O7M A;  2NVG A;  4PV1 D;  4QDD A;  2DE6 D;  5KLI C;  2E4Q A;  2HMK A;  4NB9 D;  1O7W A;  3BCC E;  1WQL A;  4OGQ D;  1Z01 A;  1RIE A;  1P84 E;  2Q3W A;  2IBZ E;  1FQT A;  2ZYL A;  3H1K E;  2YFI A;  4HKV A;  2B1X A;  1PP9 E;  1ULJ A;  3EQQ A;  1NDO A;  4H44 D;  3GKQ A;  3EN1 A;  1SQX E;  4HJL A;  4QUP A;  4HM5 A;  4HM6 A;  3GOB A;  2NUK A;  2BMR A;  2QJY C;  2QJK C;  1BCC E;  1NYK A;  4NBG D;  4NBE D;  2XRX A;  4HM0 A;  4NBD D;  5AEU A;  3TGU E;  2XR8 A;  3L72 E;  3AZC A;  1KYO E;  2DE6 A;  1EZV E;  4HM7 A;  4NB9 A;  2HMM A;  2XSO A;  3GCF A;  3L71 E;  3GZY A;  1UUV A;  4AIV A;  2CKF A;  5AEW A;  5BOK A;  3VMI A;  4H0L D;  4NBA D;  4HM4 A;  3VMI D; 
#chains in the Genus database with same CATH topology
 2HML A;  3CXH E;  1ZRT E;  1SQQ E;  2B24 A;  1SQB E;  4EMJ B;  2HMN A;  2NWF A;  3VCA A;  1O7P A;  2JZA A;  4P1B H;  3GCE A;  1Z03 A;  2QJP C;  4NBG A;  4NBE A;  4NB8 A;  1EG9 A;  4NBD A;  1O7N A;  2E76 D;  3L70 E;  4NB8 D;  2NVE A;  4U3F E;  2DE7 D;  4AAY B;  4NBH A;  1NU1 E;  2I7F A;  2ZT9 D;  3L74 E;  1L0N E;  3D89 A;  3H1L E;  4NBH D;  4HM8 A;  1KB9 E;  4QDF A;  1BE3 E;  2BMQ A;  4NBA A;  3N0Q A;  1NTM E;  2E4P A;  1O7H A;  3C0D A;  3GKE A;  2YFJ A;  1VM9 A;  4H13 D;  2DE5 A;  1O7G A;  1G8K B;  2GBW A;  3GB4 A;  5CXM A;  5HL4 A;  1G8J B;  2BCC E;  2DE5 D;  2E74 D;  2HMO A;  2XSH A;  2FYN C;  2HMJ A;  2A06 E;  4QDF B;  3H1I E;  4NBC D;  1UUW A;  2YFL A;  1VCK A;  2BMO A;  1VF5 D;  4NBB A;  3VMH A;  2QPZ A;  2E75 D;  2DE7 A;  4NBB D;  4QUQ A;  3VMH D;  1Q90 C;  4HM3 A;  4QDC A;  1SQV E;  3L73 E;  2D2C D;  2JO6 A;  4HM1 A;  3GTS A;  3VCP A;  3CX5 E;  4NBF D;  4HM2 A;  3H1J E;  3GL0 A;  1SJG A;  2YIU C;  3GZX A;  1RFS A;  3H1H E;  3CWB E;  4P1C H;  4PD4 E;  3L75 E;  1Z02 A;  5KKZ C;  1NTZ E;  3VMG A;  3GTE A;  3FOU A;  1L0L E;  1PPJ E;  4QCK A;  3VMG D;  4NBC A;  3GL2 A;  1JM1 A;  1ULI A;  2GBX A;  3DQY A;  1SQP E;  2FYU E;  2NUM A;  5KLV E;  1NTK E;  2NVF A;  2YVJ B;  4QUR A;  1WW9 A;  4NBF A;  1O7M A;  2NVG A;  4PV1 D;  4QDD A;  2DE6 D;  5KLI C;  2E4Q A;  2HMK A;  4NB9 D;  1O7W A;  3BCC E;  1WQL A;  4OGQ D;  1Z01 A;  1RIE A;  1P84 E;  2Q3W A;  2IBZ E;  1FQT A;  2ZYL A;  3H1K E;  2YFI A;  4HKV A;  2B1X A;  1PP9 E;  1ULJ A;  3EQQ A;  1NDO A;  4H44 D;  3GKQ A;  3EN1 A;  1SQX E;  4HJL A;  4QUP A;  4HM5 A;  4HM6 A;  3GOB A;  2NUK A;  2BMR A;  2QJY C;  2QJK C;  1BCC E;  1NYK A;  4NBG D;  4NBE D;  2XRX A;  4HM0 A;  4NBD D;  5AEU A;  3TGU E;  2XR8 A;  3L72 E;  3AZC A;  1KYO E;  2DE6 A;  1EZV E;  4HM7 A;  4NB9 A;  2HMM A;  2XSO A;  3GCF A;  3L71 E;  3GZY A;  1UUV A;  4AIV A;  2CKF A;  5AEW A;  5BOK A;  3VMI A;  4H0L D;  4NBA D;  4HM4 A;  3VMI D; 
#chains in the Genus database with same CATH homology
 2HML A;  3CXH E;  1ZRT E;  1SQQ E;  2B24 A;  1SQB E;  4EMJ B;  2HMN A;  2NWF A;  3VCA A;  1O7P A;  2JZA A;  4P1B H;  3GCE A;  1Z03 A;  2QJP C;  4NBG A;  4NBE A;  4NB8 A;  1EG9 A;  4NBD A;  1O7N A;  2E76 D;  3L70 E;  4NB8 D;  2NVE A;  4U3F E;  2DE7 D;  4AAY B;  4NBH A;  1NU1 E;  2I7F A;  2ZT9 D;  3L74 E;  1L0N E;  3D89 A;  3H1L E;  4NBH D;  4HM8 A;  1KB9 E;  4QDF A;  1BE3 E;  2BMQ A;  4NBA A;  3N0Q A;  1NTM E;  2E4P A;  1O7H A;  3C0D A;  3GKE A;  2YFJ A;  1VM9 A;  4H13 D;  2DE5 A;  1O7G A;  1G8K B;  2GBW A;  3GB4 A;  5CXM A;  5HL4 A;  1G8J B;  2BCC E;  2DE5 D;  2E74 D;  2HMO A;  2XSH A;  2FYN C;  2HMJ A;  2A06 E;  4QDF B;  3H1I E;  4NBC D;  1UUW A;  2YFL A;  1VCK A;  2BMO A;  1VF5 D;  4NBB A;  3VMH A;  2QPZ A;  2E75 D;  2DE7 A;  4NBB D;  4QUQ A;  3VMH D;  1Q90 C;  4HM3 A;  4QDC A;  1SQV E;  3L73 E;  2D2C D;  2JO6 A;  4HM1 A;  3GTS A;  3VCP A;  3CX5 E;  4NBF D;  4HM2 A;  3H1J E;  3GL0 A;  1SJG A;  2YIU C;  3GZX A;  1RFS A;  3H1H E;  3CWB E;  4P1C H;  4PD4 E;  3L75 E;  1Z02 A;  5KKZ C;  1NTZ E;  3VMG A;  3GTE A;  3FOU A;  1L0L E;  1PPJ E;  4QCK A;  3VMG D;  4NBC A;  3GL2 A;  1JM1 A;  1ULI A;  2GBX A;  3DQY A;  1SQP E;  2FYU E;  2NUM A;  5KLV E;  1NTK E;  2NVF A;  2YVJ B;  4QUR A;  1WW9 A;  4NBF A;  1O7M A;  2NVG A;  4PV1 D;  4QDD A;  2DE6 D;  5KLI C;  2E4Q A;  2HMK A;  4NB9 D;  1O7W A;  3BCC E;  1WQL A;  4OGQ D;  1Z01 A;  1RIE A;  1P84 E;  2Q3W A;  2IBZ E;  1FQT A;  2ZYL A;  3H1K E;  2YFI A;  4HKV A;  2B1X A;  1PP9 E;  1ULJ A;  3EQQ A;  1NDO A;  4H44 D;  3GKQ A;  3EN1 A;  1SQX E;  4HJL A;  4QUP A;  4HM5 A;  4HM6 A;  3GOB A;  2NUK A;  2BMR A;  2QJY C;  2QJK C;  1BCC E;  1NYK A;  4NBG D;  4NBE D;  2XRX A;  4HM0 A;  4NBD D;  5AEU A;  3TGU E;  2XR8 A;  3L72 E;  3AZC A;  1KYO E;  2DE6 A;  1EZV E;  4HM7 A;  4NB9 A;  2HMM A;  2XSO A;  3GCF A;  3L71 E;  3GZY A;  1UUV A;  4AIV A;  2CKF A;  5AEW A;  5BOK A;  3VMI A;  4H0L D;  4NBA D;  4HM4 A;  3VMI D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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