4HM4A

Naphthalene 1,2-dioxygenase bound to indan
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
publication title Naphthalene 1,2-Dioxygenase bound to indan
rcsb
source organism Pseudomonas sp. c18
molecule tags Oxidoreductase/oxidoreductase inhibitor
total genus 163
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm4A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm4A01
2IBZE 1Z01A 2E76D 2YIUC 2DE6A 3EQQA 1O7PA 3GCFA 4QURA 1O7HA 4EMJB 2XR8A 3VMGD 4HKVA 2DE5D 1VCKA 2Q3WA 3GCEA 3DQYA 3L70E 3GOBA 3L74E 2ZT9D 3FOUA 4HJLA 4QUQA 1ULIA 1UUVA 1VF5D 1KB9E 5AEUA 2E4PA 2FYUE 3VMGA 1Z03A 2BMOA 2A06E 4NBGD 2DE5A 2NVFA 4QDCA 4NBDA 3VCAA 3H1HE 2BMRA 3VMHD 2XSOA 3H1KE 3GZXA 3GKEA 1L0NE 4QCKA 1FQTA 3VMID 2XSHA 1RFSA 1ZRTE 1SJGA 4NBHA 2QPZA 4HM8A 3GL0A 1NDOA 3VMHA 4NBAA 2HMKA 3BCCE 4P1CH 2YFIA 4QDDA 3GL2A 1Q90C 4P1BH 4NBED 2NVGA 3VMIA 1O7MA 2BMQA 3CXHE 4H13D 2E75D 2HMNA 1SQBE 2QJPC 3H1IE 4HM7A 2QJKC 4NBBD 2DE7D 3GTSA 1SQQE 2FYNC 4NBCD 1UUWA 4U3FE 2HMLA 1L0LE 4NBEA 4HM5A 2HMMA 4HM0A 2YFLA 4AIVA 1EG9A 2NWFA 4NBBA 4NB9D 1VM9A 2DE7A 4HM1A 4NBCA 3L73E 4QUPA 1NTKE 1PPJE 4NBGA 4HM4A 3GTEA 1O7GA 1PP9E 3D89A 2JO6A 1RIEA 1SQXE 5KLIC 2ZYLA 3CX5E 2NUKA 2E74D 4QDFA 1BE3E 4NB8D 4NB9A 3L72E 2E4QA 4AAYB 4PV1D 2CKFA 1WQLA 2I7FA 3C0DA 1NTZE 1SQVE 5KKZC 2YFJA 1BCCE 5HL4A 2B24A 1ULJA 2D2CD 4NB8A 5CXMA 2NUMA 1NTME 4HM3A 3L71E 1WW9A 1JM1A 3CWBE 5BOKA 1G8JB 1SQPE 2HMOA 1O7NA 1P84E 4HM6A 2BCCE 2B1XA 5KLVE 4OGQD 2JZAA 4NBFD 4HM2A 2YVJB 4H0LD 1G8KB 4NBDD 2QJYC 3AZCA 2NVEA 4PD4E 2XRXA 1KYOE 2GBXA 1EZVE 4QDFB 2GBWA 3GB4A 3H1LE 3VCPA 3TGUE 2HMJA 3EN1A 3GKQA 1NU1E 3L75E 5AEWA 3GZYA 4NBHD 1Z02A 4NBFA 2DE6D 4H44D 1NYKA 4NBAD 3H1JE 3N0QA 1O7WA
chains in the Genus database with same CATH superfamily
2IBZE 1Z01A 2E76D 2YIUC 2DE6A 3EQQA 1O7PA 3GCFA 4QURA 1O7HA 4EMJB 2XR8A 3VMGD 4HKVA 2DE5D 1VCKA 2Q3WA 3GCEA 3DQYA 3L70E 3GOBA 3L74E 2ZT9D 3FOUA 4HJLA 4QUQA 1ULIA 1UUVA 1VF5D 1KB9E 5AEUA 2E4PA 2FYUE 3VMGA 1Z03A 2BMOA 2A06E 4NBGD 2DE5A 2NVFA 4QDCA 4NBDA 3VCAA 3H1HE 2BMRA 3VMHD 2XSOA 3H1KE 3GZXA 3GKEA 1L0NE 4QCKA 1FQTA 3VMID 2XSHA 1RFSA 1ZRTE 1SJGA 4NBHA 2QPZA 4HM8A 3GL0A 1NDOA 3VMHA 4NBAA 2HMKA 3BCCE 4P1CH 2YFIA 4QDDA 3GL2A 1Q90C 4P1BH 4NBED 2NVGA 3VMIA 1O7MA 2BMQA 3CXHE 4H13D 2E75D 2HMNA 1SQBE 2QJPC 3H1IE 4HM7A 2QJKC 4NBBD 2DE7D 3GTSA 1SQQE 2FYNC 4NBCD 1UUWA 4U3FE 2HMLA 1L0LE 4NBEA 4HM5A 2HMMA 4HM0A 2YFLA 4AIVA 1EG9A 2NWFA 4NBBA 4NB9D 1VM9A 2DE7A 4HM1A 4NBCA 3L73E 4QUPA 1NTKE 1PPJE 4NBGA 4HM4A 3GTEA 1O7GA 1PP9E 3D89A 2JO6A 1RIEA 1SQXE 5KLIC 2ZYLA 3CX5E 2NUKA 2E74D 4QDFA 1BE3E 4NB8D 4NB9A 3L72E 2E4QA 4AAYB 4PV1D 2CKFA 1WQLA 2I7FA 3C0DA 1NTZE 1SQVE 5KKZC 2YFJA 1BCCE 5HL4A 2B24A 1ULJA 2D2CD 4NB8A 5CXMA 2NUMA 1NTME 4HM3A 3L71E 1WW9A 1JM1A 3CWBE 5BOKA 1G8JB 1SQPE 2HMOA 1O7NA 1P84E 4HM6A 2BCCE 2B1XA 5KLVE 4OGQD 2JZAA 4NBFD 4HM2A 2YVJB 4H0LD 1G8KB 4NBDD 2QJYC 3AZCA 2NVEA 4PD4E 2XRXA 1KYOE 2GBXA 1EZVE 4QDFB 2GBWA 3GB4A 3H1LE 3VCPA 3TGUE 2HMJA 3EN1A 3GKQA 1NU1E 3L75E 5AEWA 3GZYA 4NBHD 1Z02A 4NBFA 2DE6D 4H44D 1NYKA 4NBAD 3H1JE 3N0QA 1O7WA
chains in the Genus database with same CATH topology
2IBZE 1Z01A 2E76D 2YIUC 2DE6A 3EQQA 1O7PA 3GCFA 4QURA 1O7HA 4EMJB 2XR8A 3VMGD 4HKVA 2DE5D 1VCKA 2Q3WA 3GCEA 3DQYA 3L70E 3GOBA 3L74E 2ZT9D 3FOUA 4HJLA 4QUQA 1ULIA 1UUVA 1VF5D 1KB9E 5AEUA 2E4PA 2FYUE 3VMGA 1Z03A 2BMOA 2A06E 4NBGD 2DE5A 2NVFA 4QDCA 4NBDA 3VCAA 3H1HE 2BMRA 3VMHD 2XSOA 3H1KE 3GZXA 3GKEA 1L0NE 4QCKA 1FQTA 3VMID 2XSHA 1RFSA 1ZRTE 1SJGA 4NBHA 2QPZA 4HM8A 3GL0A 1NDOA 3VMHA 4NBAA 2HMKA 3BCCE 4P1CH 2YFIA 4QDDA 3GL2A 1Q90C 4P1BH 4NBED 2NVGA 3VMIA 1O7MA 2BMQA 3CXHE 4H13D 2E75D 2HMNA 1SQBE 2QJPC 3H1IE 4HM7A 2QJKC 4NBBD 2DE7D 3GTSA 1SQQE 2FYNC 4NBCD 1UUWA 4U3FE 2HMLA 1L0LE 4NBEA 4HM5A 2HMMA 4HM0A 2YFLA 4AIVA 1EG9A 2NWFA 4NBBA 4NB9D 1VM9A 2DE7A 4HM1A 4NBCA 3L73E 4QUPA 1NTKE 1PPJE 4NBGA 4HM4A 3GTEA 1O7GA 1PP9E 3D89A 2JO6A 1RIEA 1SQXE 5KLIC 2ZYLA 3CX5E 2NUKA 2E74D 4QDFA 1BE3E 4NB8D 4NB9A 3L72E 2E4QA 4AAYB 4PV1D 2CKFA 1WQLA 2I7FA 3C0DA 1NTZE 1SQVE 5KKZC 2YFJA 1BCCE 5HL4A 2B24A 1ULJA 2D2CD 4NB8A 5CXMA 2NUMA 1NTME 4HM3A 3L71E 1WW9A 1JM1A 3CWBE 5BOKA 1G8JB 1SQPE 2HMOA 1O7NA 1P84E 4HM6A 2BCCE 2B1XA 5KLVE 4OGQD 2JZAA 4NBFD 4HM2A 2YVJB 4H0LD 1G8KB 4NBDD 2QJYC 3AZCA 2NVEA 4PD4E 2XRXA 1KYOE 2GBXA 1EZVE 4QDFB 2GBWA 3GB4A 3H1LE 3VCPA 3TGUE 2HMJA 3EN1A 3GKQA 1NU1E 3L75E 5AEWA 3GZYA 4NBHD 1Z02A 4NBFA 2DE6D 4H44D 1NYKA 4NBAD 3H1JE 3N0QA 1O7WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IBZ E;  1Z01 A;  2E76 D;  2YIU C;  2DE6 A;  3EQQ A;  1O7P A;  3GCF A;  4QUR A;  1O7H A;  4EMJ B;  2XR8 A;  3VMG D;  4HKV A;  2DE5 D;  1VCK A;  2Q3W A;  3GCE A;  3DQY A;  3L70 E;  3GOB A;  3L74 E;  2ZT9 D;  3FOU A;  4HJL A;  4QUQ A;  1ULI A;  1UUV A;  1VF5 D;  1KB9 E;  5AEU A;  2E4P A;  2FYU E;  3VMG A;  1Z03 A;  2BMO A;  2A06 E;  4NBG D;  2DE5 A;  2NVF A;  4QDC A;  4NBD A;  3VCA A;  3H1H E;  2BMR A;  3VMH D;  2XSO A;  3H1K E;  3GZX A;  3GKE A;  1L0N E;  4QCK A;  1FQT A;  3VMI D;  2XSH A;  1RFS A;  1ZRT E;  1SJG A;  4NBH A;  2QPZ A;  4HM8 A;  3GL0 A;  1NDO A;  3VMH A;  4NBA A;  2HMK A;  3BCC E;  4P1C H;  2YFI A;  4QDD A;  3GL2 A;  1Q90 C;  4P1B H;  4NBE D;  2NVG A;  3VMI A;  1O7M A;  2BMQ A;  3CXH E;  4H13 D;  2E75 D;  2HMN A;  1SQB E;  2QJP C;  3H1I E;  4HM7 A;  2QJK C;  4NBB D;  2DE7 D;  3GTS A;  1SQQ E;  2FYN C;  4NBC D;  1UUW A;  4U3F E;  2HML A;  1L0L E;  4NBE A;  4HM5 A;  2HMM A;  4HM0 A;  2YFL A;  4AIV A;  1EG9 A;  2NWF A;  4NBB A;  4NB9 D;  1VM9 A;  2DE7 A;  4HM1 A;  4NBC A;  3L73 E;  4QUP A;  1NTK E;  1PPJ E;  4NBG A;  4HM4 A;  3GTE A;  1O7G A;  1PP9 E;  3D89 A;  2JO6 A;  1RIE A;  1SQX E;  5KLI C;  2ZYL A;  3CX5 E;  2NUK A;  2E74 D;  4QDF A;  1BE3 E;  4NB8 D;  4NB9 A;  3L72 E;  2E4Q A;  4AAY B;  4PV1 D;  2CKF A;  1WQL A;  2I7F A;  3C0D A;  1NTZ E;  1SQV E;  5KKZ C;  2YFJ A;  1BCC E;  5HL4 A;  2B24 A;  1ULJ A;  2D2C D;  4NB8 A;  5CXM A;  2NUM A;  1NTM E;  4HM3 A;  3L71 E;  1WW9 A;  1JM1 A;  3CWB E;  5BOK A;  1G8J B;  1SQP E;  2HMO A;  1O7N A;  1P84 E;  4HM6 A;  2BCC E;  2B1X A;  5KLV E;  4OGQ D;  2JZA A;  4NBF D;  4HM2 A;  2YVJ B;  4H0L D;  1G8K B;  4NBD D;  2QJY C;  3AZC A;  2NVE A;  4PD4 E;  2XRX A;  1KYO E;  2GBX A;  1EZV E;  4QDF B;  2GBW A;  3GB4 A;  3H1L E;  3VCP A;  3TGU E;  2HMJ A;  3EN1 A;  3GKQ A;  1NU1 E;  3L75 E;  5AEW A;  3GZY A;  4NBH D;  1Z02 A;  4NBF A;  2DE6 D;  4H44 D;  1NYK A;  4NBA D;  3H1J E;  3N0Q A;  1O7W A; 
#chains in the Genus database with same CATH topology
 2IBZ E;  1Z01 A;  2E76 D;  2YIU C;  2DE6 A;  3EQQ A;  1O7P A;  3GCF A;  4QUR A;  1O7H A;  4EMJ B;  2XR8 A;  3VMG D;  4HKV A;  2DE5 D;  1VCK A;  2Q3W A;  3GCE A;  3DQY A;  3L70 E;  3GOB A;  3L74 E;  2ZT9 D;  3FOU A;  4HJL A;  4QUQ A;  1ULI A;  1UUV A;  1VF5 D;  1KB9 E;  5AEU A;  2E4P A;  2FYU E;  3VMG A;  1Z03 A;  2BMO A;  2A06 E;  4NBG D;  2DE5 A;  2NVF A;  4QDC A;  4NBD A;  3VCA A;  3H1H E;  2BMR A;  3VMH D;  2XSO A;  3H1K E;  3GZX A;  3GKE A;  1L0N E;  4QCK A;  1FQT A;  3VMI D;  2XSH A;  1RFS A;  1ZRT E;  1SJG A;  4NBH A;  2QPZ A;  4HM8 A;  3GL0 A;  1NDO A;  3VMH A;  4NBA A;  2HMK A;  3BCC E;  4P1C H;  2YFI A;  4QDD A;  3GL2 A;  1Q90 C;  4P1B H;  4NBE D;  2NVG A;  3VMI A;  1O7M A;  2BMQ A;  3CXH E;  4H13 D;  2E75 D;  2HMN A;  1SQB E;  2QJP C;  3H1I E;  4HM7 A;  2QJK C;  4NBB D;  2DE7 D;  3GTS A;  1SQQ E;  2FYN C;  4NBC D;  1UUW A;  4U3F E;  2HML A;  1L0L E;  4NBE A;  4HM5 A;  2HMM A;  4HM0 A;  2YFL A;  4AIV A;  1EG9 A;  2NWF A;  4NBB A;  4NB9 D;  1VM9 A;  2DE7 A;  4HM1 A;  4NBC A;  3L73 E;  4QUP A;  1NTK E;  1PPJ E;  4NBG A;  4HM4 A;  3GTE A;  1O7G A;  1PP9 E;  3D89 A;  2JO6 A;  1RIE A;  1SQX E;  5KLI C;  2ZYL A;  3CX5 E;  2NUK A;  2E74 D;  4QDF A;  1BE3 E;  4NB8 D;  4NB9 A;  3L72 E;  2E4Q A;  4AAY B;  4PV1 D;  2CKF A;  1WQL A;  2I7F A;  3C0D A;  1NTZ E;  1SQV E;  5KKZ C;  2YFJ A;  1BCC E;  5HL4 A;  2B24 A;  1ULJ A;  2D2C D;  4NB8 A;  5CXM A;  2NUM A;  1NTM E;  4HM3 A;  3L71 E;  1WW9 A;  1JM1 A;  3CWB E;  5BOK A;  1G8J B;  1SQP E;  2HMO A;  1O7N A;  1P84 E;  4HM6 A;  2BCC E;  2B1X A;  5KLV E;  4OGQ D;  2JZA A;  4NBF D;  4HM2 A;  2YVJ B;  4H0L D;  1G8K B;  4NBD D;  2QJY C;  3AZC A;  2NVE A;  4PD4 E;  2XRX A;  1KYO E;  2GBX A;  1EZV E;  4QDF B;  2GBW A;  3GB4 A;  3H1L E;  3VCP A;  3TGU E;  2HMJ A;  3EN1 A;  3GKQ A;  1NU1 E;  3L75 E;  5AEW A;  3GZY A;  4NBH D;  1Z02 A;  4NBF A;  2DE6 D;  4H44 D;  1NYK A;  4NBA D;  3H1J E;  3N0Q A;  1O7W A; 
#chains in the Genus database with same CATH homology
 2IBZ E;  1Z01 A;  2E76 D;  2YIU C;  2DE6 A;  3EQQ A;  1O7P A;  3GCF A;  4QUR A;  1O7H A;  4EMJ B;  2XR8 A;  3VMG D;  4HKV A;  2DE5 D;  1VCK A;  2Q3W A;  3GCE A;  3DQY A;  3L70 E;  3GOB A;  3L74 E;  2ZT9 D;  3FOU A;  4HJL A;  4QUQ A;  1ULI A;  1UUV A;  1VF5 D;  1KB9 E;  5AEU A;  2E4P A;  2FYU E;  3VMG A;  1Z03 A;  2BMO A;  2A06 E;  4NBG D;  2DE5 A;  2NVF A;  4QDC A;  4NBD A;  3VCA A;  3H1H E;  2BMR A;  3VMH D;  2XSO A;  3H1K E;  3GZX A;  3GKE A;  1L0N E;  4QCK A;  1FQT A;  3VMI D;  2XSH A;  1RFS A;  1ZRT E;  1SJG A;  4NBH A;  2QPZ A;  4HM8 A;  3GL0 A;  1NDO A;  3VMH A;  4NBA A;  2HMK A;  3BCC E;  4P1C H;  2YFI A;  4QDD A;  3GL2 A;  1Q90 C;  4P1B H;  4NBE D;  2NVG A;  3VMI A;  1O7M A;  2BMQ A;  3CXH E;  4H13 D;  2E75 D;  2HMN A;  1SQB E;  2QJP C;  3H1I E;  4HM7 A;  2QJK C;  4NBB D;  2DE7 D;  3GTS A;  1SQQ E;  2FYN C;  4NBC D;  1UUW A;  4U3F E;  2HML A;  1L0L E;  4NBE A;  4HM5 A;  2HMM A;  4HM0 A;  2YFL A;  4AIV A;  1EG9 A;  2NWF A;  4NBB A;  4NB9 D;  1VM9 A;  2DE7 A;  4HM1 A;  4NBC A;  3L73 E;  4QUP A;  1NTK E;  1PPJ E;  4NBG A;  4HM4 A;  3GTE A;  1O7G A;  1PP9 E;  3D89 A;  2JO6 A;  1RIE A;  1SQX E;  5KLI C;  2ZYL A;  3CX5 E;  2NUK A;  2E74 D;  4QDF A;  1BE3 E;  4NB8 D;  4NB9 A;  3L72 E;  2E4Q A;  4AAY B;  4PV1 D;  2CKF A;  1WQL A;  2I7F A;  3C0D A;  1NTZ E;  1SQV E;  5KKZ C;  2YFJ A;  1BCC E;  5HL4 A;  2B24 A;  1ULJ A;  2D2C D;  4NB8 A;  5CXM A;  2NUM A;  1NTM E;  4HM3 A;  3L71 E;  1WW9 A;  1JM1 A;  3CWB E;  5BOK A;  1G8J B;  1SQP E;  2HMO A;  1O7N A;  1P84 E;  4HM6 A;  2BCC E;  2B1X A;  5KLV E;  4OGQ D;  2JZA A;  4NBF D;  4HM2 A;  2YVJ B;  4H0L D;  1G8K B;  4NBD D;  2QJY C;  3AZC A;  2NVE A;  4PD4 E;  2XRX A;  1KYO E;  2GBX A;  1EZV E;  4QDF B;  2GBW A;  3GB4 A;  3H1L E;  3VCP A;  3TGU E;  2HMJ A;  3EN1 A;  3GKQ A;  1NU1 E;  3L75 E;  5AEW A;  3GZY A;  4NBH D;  1Z02 A;  4NBF A;  2DE6 D;  4H44 D;  1NYK A;  4NBA D;  3H1J E;  3N0Q A;  1O7W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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