4HM4A

Naphthalene 1,2-dioxygenase bound to indan
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase/oxidoreductase inhibitor
source organism Pseudomonas sp. c18
publication title Naphthalene 1,2-Dioxygenase bound to indan
rcsb
molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
total genus 163
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm4A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm4A01
3L74E 2GBWA 1NU1E 1P84E 1SQPE 3AZCA 3VMGA 2D2CD 3FOUA 4PD4E 5HL4A 2XR8A 1SQBE 3CWBE 2YFIA 4NBAA 1VF5D 3CX5E 2DE7D 1G8KB 2QJPC 1WW9A 4NBGD 1SQVE 3VMHA 2BMQA 3VCPA 2B1XA 4NB8A 1L0LE 1ZRTE 3VMID 4NBHD 3D89A 3VCAA 3H1HE 2B24A 2NWFA 1NTME 4HM8A 4OGQD 3L71E 1EG9A 3GZXA 4HM5A 2JZAA 4NBCA 1FQTA 1O7HA 1O7GA 2YIUC 1VCKA 2HMJA 1JM1A 1UUWA 3VMGD 1BE3E 4H0LD 4NBAD 1BCCE 2Q3WA 3L70E 2E76D 3VMHD 3GCEA 4QDCA 3DQYA 1L0NE 2E4QA 3L72E 4NB8D 4NBFA 2FYNC 2JO6A 3H1KE 2I7FA 2HMKA 2BMRA 2XSOA 1KYOE 4HJLA 2HMNA 2FYUE 2DE6A 1O7WA 1SQXE 3GKEA 1NDOA 1EZVE 4HM6A 4P1BH 1NTZE 2QPZA 4NBCD 5AEUA 2HMLA 3C0DA 4NBDD 5CXMA 5AEWA 2E75D 2QJYC 2NUKA 3GL2A 2DE5A 2BMOA 2HMMA 2YFLA 3EN1A 2NVGA 3GTEA 1NYKA 3H1IE 5KLVE 4NBBA 4QDFA 4QUPA 2IBZE 1Z01A 1PP9E 4H13D 4NBFD 1NTKE 4HKVA 1PPJE 4AIVA 1O7PA 2A06E 2XRXA 2GBXA 4HM4A 3CXHE 2DE7A 4EMJB 1UUVA 1RIEA 1ULIA 2HMOA 2ZYLA 3GL0A 3VMIA 5KLIC 5KKZC 4HM0A 4QDDA 1RFSA 2DE5D 3L75E 1Q90C 4NBEA 4NBBD 4U3FE 2CKFA 2YVJB 3TGUE 2YFJA 4NB9A 5BOKA 1O7MA 3GZYA 3GKQA 2E4PA 3L73E 3GB4A 4HM2A 1Z03A 3EQQA 3N0QA 3GOBA 2ZT9D 2DE6D 1VM9A 4H44D 4QUQA 2BCCE 4PV1D 1SQQE 4HM3A 4NBGA 2XSHA 4NBED 2QJKC 3BCCE 4AAYB 4HM7A 2NUMA 4NBHA 4QDFB 3H1JE 2NVEA 1SJGA 1KB9E 3GTSA 1WQLA 4NB9D 4QCKA 2E74D 4NBDA 4P1CH 4QURA 1O7NA 1G8JB 4HM1A 3GCFA 1ULJA 1Z02A 3H1LE 2NVFA
chains in the Genus database with same CATH superfamily
3L74E 2GBWA 1NU1E 1P84E 1SQPE 3AZCA 3VMGA 2D2CD 3FOUA 4PD4E 5HL4A 2XR8A 1SQBE 3CWBE 2YFIA 4NBAA 1VF5D 3CX5E 2DE7D 1G8KB 2QJPC 1WW9A 4NBGD 1SQVE 3VMHA 2BMQA 3VCPA 2B1XA 4NB8A 1L0LE 1ZRTE 3VMID 4NBHD 3D89A 3VCAA 3H1HE 2B24A 2NWFA 1NTME 4HM8A 4OGQD 3L71E 1EG9A 3GZXA 4HM5A 2JZAA 4NBCA 1FQTA 1O7HA 1O7GA 2YIUC 1VCKA 2HMJA 1JM1A 1UUWA 3VMGD 1BE3E 4H0LD 4NBAD 1BCCE 2Q3WA 3L70E 2E76D 3VMHD 3GCEA 4QDCA 3DQYA 1L0NE 2E4QA 3L72E 4NB8D 4NBFA 2FYNC 2JO6A 3H1KE 2I7FA 2HMKA 2BMRA 2XSOA 1KYOE 4HJLA 2HMNA 2FYUE 2DE6A 1O7WA 1SQXE 3GKEA 1NDOA 1EZVE 4HM6A 4P1BH 1NTZE 2QPZA 4NBCD 5AEUA 2HMLA 3C0DA 4NBDD 5CXMA 5AEWA 2E75D 2QJYC 2NUKA 3GL2A 2DE5A 2BMOA 2HMMA 2YFLA 3EN1A 2NVGA 3GTEA 1NYKA 3H1IE 5KLVE 4NBBA 4QDFA 4QUPA 2IBZE 1Z01A 1PP9E 4H13D 4NBFD 1NTKE 4HKVA 1PPJE 4AIVA 1O7PA 2A06E 2XRXA 2GBXA 4HM4A 3CXHE 2DE7A 4EMJB 1UUVA 1RIEA 1ULIA 2HMOA 2ZYLA 3GL0A 3VMIA 5KLIC 5KKZC 4HM0A 4QDDA 1RFSA 2DE5D 3L75E 1Q90C 4NBEA 4NBBD 4U3FE 2CKFA 2YVJB 3TGUE 2YFJA 4NB9A 5BOKA 1O7MA 3GZYA 3GKQA 2E4PA 3L73E 3GB4A 4HM2A 1Z03A 3EQQA 3N0QA 3GOBA 2ZT9D 2DE6D 1VM9A 4H44D 4QUQA 2BCCE 4PV1D 1SQQE 4HM3A 4NBGA 2XSHA 4NBED 2QJKC 3BCCE 4AAYB 4HM7A 2NUMA 4NBHA 4QDFB 3H1JE 2NVEA 1SJGA 1KB9E 3GTSA 1WQLA 4NB9D 4QCKA 2E74D 4NBDA 4P1CH 4QURA 1O7NA 1G8JB 4HM1A 3GCFA 1ULJA 1Z02A 3H1LE 2NVFA
chains in the Genus database with same CATH topology
3L74E 2GBWA 1NU1E 1P84E 1SQPE 3AZCA 3VMGA 2D2CD 3FOUA 4PD4E 5HL4A 2XR8A 1SQBE 3CWBE 2YFIA 4NBAA 1VF5D 3CX5E 2DE7D 1G8KB 2QJPC 1WW9A 4NBGD 1SQVE 3VMHA 2BMQA 3VCPA 2B1XA 4NB8A 1L0LE 1ZRTE 3VMID 4NBHD 3D89A 3VCAA 3H1HE 2B24A 2NWFA 1NTME 4HM8A 4OGQD 3L71E 1EG9A 3GZXA 4HM5A 2JZAA 4NBCA 1FQTA 1O7HA 1O7GA 2YIUC 1VCKA 2HMJA 1JM1A 1UUWA 3VMGD 1BE3E 4H0LD 4NBAD 1BCCE 2Q3WA 3L70E 2E76D 3VMHD 3GCEA 4QDCA 3DQYA 1L0NE 2E4QA 3L72E 4NB8D 4NBFA 2FYNC 2JO6A 3H1KE 2I7FA 2HMKA 2BMRA 2XSOA 1KYOE 4HJLA 2HMNA 2FYUE 2DE6A 1O7WA 1SQXE 3GKEA 1NDOA 1EZVE 4HM6A 4P1BH 1NTZE 2QPZA 4NBCD 5AEUA 2HMLA 3C0DA 4NBDD 5CXMA 5AEWA 2E75D 2QJYC 2NUKA 3GL2A 2DE5A 2BMOA 2HMMA 2YFLA 3EN1A 2NVGA 3GTEA 1NYKA 3H1IE 5KLVE 4NBBA 4QDFA 4QUPA 2IBZE 1Z01A 1PP9E 4H13D 4NBFD 1NTKE 4HKVA 1PPJE 4AIVA 1O7PA 2A06E 2XRXA 2GBXA 4HM4A 3CXHE 2DE7A 4EMJB 1UUVA 1RIEA 1ULIA 2HMOA 2ZYLA 3GL0A 3VMIA 5KLIC 5KKZC 4HM0A 4QDDA 1RFSA 2DE5D 3L75E 1Q90C 4NBEA 4NBBD 4U3FE 2CKFA 2YVJB 3TGUE 2YFJA 4NB9A 5BOKA 1O7MA 3GZYA 3GKQA 2E4PA 3L73E 3GB4A 4HM2A 1Z03A 3EQQA 3N0QA 3GOBA 2ZT9D 2DE6D 1VM9A 4H44D 4QUQA 2BCCE 4PV1D 1SQQE 4HM3A 4NBGA 2XSHA 4NBED 2QJKC 3BCCE 4AAYB 4HM7A 2NUMA 4NBHA 4QDFB 3H1JE 2NVEA 1SJGA 1KB9E 3GTSA 1WQLA 4NB9D 4QCKA 2E74D 4NBDA 4P1CH 4QURA 1O7NA 1G8JB 4HM1A 3GCFA 1ULJA 1Z02A 3H1LE 2NVFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L74 E;  2GBW A;  1NU1 E;  1P84 E;  1SQP E;  3AZC A;  3VMG A;  2D2C D;  3FOU A;  4PD4 E;  5HL4 A;  2XR8 A;  1SQB E;  3CWB E;  2YFI A;  4NBA A;  1VF5 D;  3CX5 E;  2DE7 D;  1G8K B;  2QJP C;  1WW9 A;  4NBG D;  1SQV E;  3VMH A;  2BMQ A;  3VCP A;  2B1X A;  4NB8 A;  1L0L E;  1ZRT E;  3VMI D;  4NBH D;  3D89 A;  3VCA A;  3H1H E;  2B24 A;  2NWF A;  1NTM E;  4HM8 A;  4OGQ D;  3L71 E;  1EG9 A;  3GZX A;  4HM5 A;  2JZA A;  4NBC A;  1FQT A;  1O7H A;  1O7G A;  2YIU C;  1VCK A;  2HMJ A;  1JM1 A;  1UUW A;  3VMG D;  1BE3 E;  4H0L D;  4NBA D;  1BCC E;  2Q3W A;  3L70 E;  2E76 D;  3VMH D;  3GCE A;  4QDC A;  3DQY A;  1L0N E;  2E4Q A;  3L72 E;  4NB8 D;  4NBF A;  2FYN C;  2JO6 A;  3H1K E;  2I7F A;  2HMK A;  2BMR A;  2XSO A;  1KYO E;  4HJL A;  2HMN A;  2FYU E;  2DE6 A;  1O7W A;  1SQX E;  3GKE A;  1NDO A;  1EZV E;  4HM6 A;  4P1B H;  1NTZ E;  2QPZ A;  4NBC D;  5AEU A;  2HML A;  3C0D A;  4NBD D;  5CXM A;  5AEW A;  2E75 D;  2QJY C;  2NUK A;  3GL2 A;  2DE5 A;  2BMO A;  2HMM A;  2YFL A;  3EN1 A;  2NVG A;  3GTE A;  1NYK A;  3H1I E;  5KLV E;  4NBB A;  4QDF A;  4QUP A;  2IBZ E;  1Z01 A;  1PP9 E;  4H13 D;  4NBF D;  1NTK E;  4HKV A;  1PPJ E;  4AIV A;  1O7P A;  2A06 E;  2XRX A;  2GBX A;  4HM4 A;  3CXH E;  2DE7 A;  4EMJ B;  1UUV A;  1RIE A;  1ULI A;  2HMO A;  2ZYL A;  3GL0 A;  3VMI A;  5KLI C;  5KKZ C;  4HM0 A;  4QDD A;  1RFS A;  2DE5 D;  3L75 E;  1Q90 C;  4NBE A;  4NBB D;  4U3F E;  2CKF A;  2YVJ B;  3TGU E;  2YFJ A;  4NB9 A;  5BOK A;  1O7M A;  3GZY A;  3GKQ A;  2E4P A;  3L73 E;  3GB4 A;  4HM2 A;  1Z03 A;  3EQQ A;  3N0Q A;  3GOB A;  2ZT9 D;  2DE6 D;  1VM9 A;  4H44 D;  4QUQ A;  2BCC E;  4PV1 D;  1SQQ E;  4HM3 A;  4NBG A;  2XSH A;  4NBE D;  2QJK C;  3BCC E;  4AAY B;  4HM7 A;  2NUM A;  4NBH A;  4QDF B;  3H1J E;  2NVE A;  1SJG A;  1KB9 E;  3GTS A;  1WQL A;  4NB9 D;  4QCK A;  2E74 D;  4NBD A;  4P1C H;  4QUR A;  1O7N A;  1G8J B;  4HM1 A;  3GCF A;  1ULJ A;  1Z02 A;  3H1L E;  2NVF A; 
#chains in the Genus database with same CATH topology
 3L74 E;  2GBW A;  1NU1 E;  1P84 E;  1SQP E;  3AZC A;  3VMG A;  2D2C D;  3FOU A;  4PD4 E;  5HL4 A;  2XR8 A;  1SQB E;  3CWB E;  2YFI A;  4NBA A;  1VF5 D;  3CX5 E;  2DE7 D;  1G8K B;  2QJP C;  1WW9 A;  4NBG D;  1SQV E;  3VMH A;  2BMQ A;  3VCP A;  2B1X A;  4NB8 A;  1L0L E;  1ZRT E;  3VMI D;  4NBH D;  3D89 A;  3VCA A;  3H1H E;  2B24 A;  2NWF A;  1NTM E;  4HM8 A;  4OGQ D;  3L71 E;  1EG9 A;  3GZX A;  4HM5 A;  2JZA A;  4NBC A;  1FQT A;  1O7H A;  1O7G A;  2YIU C;  1VCK A;  2HMJ A;  1JM1 A;  1UUW A;  3VMG D;  1BE3 E;  4H0L D;  4NBA D;  1BCC E;  2Q3W A;  3L70 E;  2E76 D;  3VMH D;  3GCE A;  4QDC A;  3DQY A;  1L0N E;  2E4Q A;  3L72 E;  4NB8 D;  4NBF A;  2FYN C;  2JO6 A;  3H1K E;  2I7F A;  2HMK A;  2BMR A;  2XSO A;  1KYO E;  4HJL A;  2HMN A;  2FYU E;  2DE6 A;  1O7W A;  1SQX E;  3GKE A;  1NDO A;  1EZV E;  4HM6 A;  4P1B H;  1NTZ E;  2QPZ A;  4NBC D;  5AEU A;  2HML A;  3C0D A;  4NBD D;  5CXM A;  5AEW A;  2E75 D;  2QJY C;  2NUK A;  3GL2 A;  2DE5 A;  2BMO A;  2HMM A;  2YFL A;  3EN1 A;  2NVG A;  3GTE A;  1NYK A;  3H1I E;  5KLV E;  4NBB A;  4QDF A;  4QUP A;  2IBZ E;  1Z01 A;  1PP9 E;  4H13 D;  4NBF D;  1NTK E;  4HKV A;  1PPJ E;  4AIV A;  1O7P A;  2A06 E;  2XRX A;  2GBX A;  4HM4 A;  3CXH E;  2DE7 A;  4EMJ B;  1UUV A;  1RIE A;  1ULI A;  2HMO A;  2ZYL A;  3GL0 A;  3VMI A;  5KLI C;  5KKZ C;  4HM0 A;  4QDD A;  1RFS A;  2DE5 D;  3L75 E;  1Q90 C;  4NBE A;  4NBB D;  4U3F E;  2CKF A;  2YVJ B;  3TGU E;  2YFJ A;  4NB9 A;  5BOK A;  1O7M A;  3GZY A;  3GKQ A;  2E4P A;  3L73 E;  3GB4 A;  4HM2 A;  1Z03 A;  3EQQ A;  3N0Q A;  3GOB A;  2ZT9 D;  2DE6 D;  1VM9 A;  4H44 D;  4QUQ A;  2BCC E;  4PV1 D;  1SQQ E;  4HM3 A;  4NBG A;  2XSH A;  4NBE D;  2QJK C;  3BCC E;  4AAY B;  4HM7 A;  2NUM A;  4NBH A;  4QDF B;  3H1J E;  2NVE A;  1SJG A;  1KB9 E;  3GTS A;  1WQL A;  4NB9 D;  4QCK A;  2E74 D;  4NBD A;  4P1C H;  4QUR A;  1O7N A;  1G8J B;  4HM1 A;  3GCF A;  1ULJ A;  1Z02 A;  3H1L E;  2NVF A; 
#chains in the Genus database with same CATH homology
 3L74 E;  2GBW A;  1NU1 E;  1P84 E;  1SQP E;  3AZC A;  3VMG A;  2D2C D;  3FOU A;  4PD4 E;  5HL4 A;  2XR8 A;  1SQB E;  3CWB E;  2YFI A;  4NBA A;  1VF5 D;  3CX5 E;  2DE7 D;  1G8K B;  2QJP C;  1WW9 A;  4NBG D;  1SQV E;  3VMH A;  2BMQ A;  3VCP A;  2B1X A;  4NB8 A;  1L0L E;  1ZRT E;  3VMI D;  4NBH D;  3D89 A;  3VCA A;  3H1H E;  2B24 A;  2NWF A;  1NTM E;  4HM8 A;  4OGQ D;  3L71 E;  1EG9 A;  3GZX A;  4HM5 A;  2JZA A;  4NBC A;  1FQT A;  1O7H A;  1O7G A;  2YIU C;  1VCK A;  2HMJ A;  1JM1 A;  1UUW A;  3VMG D;  1BE3 E;  4H0L D;  4NBA D;  1BCC E;  2Q3W A;  3L70 E;  2E76 D;  3VMH D;  3GCE A;  4QDC A;  3DQY A;  1L0N E;  2E4Q A;  3L72 E;  4NB8 D;  4NBF A;  2FYN C;  2JO6 A;  3H1K E;  2I7F A;  2HMK A;  2BMR A;  2XSO A;  1KYO E;  4HJL A;  2HMN A;  2FYU E;  2DE6 A;  1O7W A;  1SQX E;  3GKE A;  1NDO A;  1EZV E;  4HM6 A;  4P1B H;  1NTZ E;  2QPZ A;  4NBC D;  5AEU A;  2HML A;  3C0D A;  4NBD D;  5CXM A;  5AEW A;  2E75 D;  2QJY C;  2NUK A;  3GL2 A;  2DE5 A;  2BMO A;  2HMM A;  2YFL A;  3EN1 A;  2NVG A;  3GTE A;  1NYK A;  3H1I E;  5KLV E;  4NBB A;  4QDF A;  4QUP A;  2IBZ E;  1Z01 A;  1PP9 E;  4H13 D;  4NBF D;  1NTK E;  4HKV A;  1PPJ E;  4AIV A;  1O7P A;  2A06 E;  2XRX A;  2GBX A;  4HM4 A;  3CXH E;  2DE7 A;  4EMJ B;  1UUV A;  1RIE A;  1ULI A;  2HMO A;  2ZYL A;  3GL0 A;  3VMI A;  5KLI C;  5KKZ C;  4HM0 A;  4QDD A;  1RFS A;  2DE5 D;  3L75 E;  1Q90 C;  4NBE A;  4NBB D;  4U3F E;  2CKF A;  2YVJ B;  3TGU E;  2YFJ A;  4NB9 A;  5BOK A;  1O7M A;  3GZY A;  3GKQ A;  2E4P A;  3L73 E;  3GB4 A;  4HM2 A;  1Z03 A;  3EQQ A;  3N0Q A;  3GOB A;  2ZT9 D;  2DE6 D;  1VM9 A;  4H44 D;  4QUQ A;  2BCC E;  4PV1 D;  1SQQ E;  4HM3 A;  4NBG A;  2XSH A;  4NBE D;  2QJK C;  3BCC E;  4AAY B;  4HM7 A;  2NUM A;  4NBH A;  4QDF B;  3H1J E;  2NVE A;  1SJG A;  1KB9 E;  3GTS A;  1WQL A;  4NB9 D;  4QCK A;  2E74 D;  4NBD A;  4P1C H;  4QUR A;  1O7N A;  1G8J B;  4HM1 A;  3GCF A;  1ULJ A;  1Z02 A;  3H1L E;  2NVF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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