1O7WA

Naphthalene 1,2-dioxygenase, fully reduced form
Total Genus 162
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal Structure of Naphthalene Dioxygenase: Side-on Binding of Dioxygen to Iron
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Oxidoreductase
molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
total genus 162
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2002-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1o7wA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1o7wA01
1EZVE 4NBGA 3GB4A 4NBCD 3GCFA 2NVGA 3VMHD 5AEWA 3GL0A 4EMJB 2B24A 3VCAA 4NB8A 2I7FA 4HM3A 1L0LE 1ULIA 2DE5A 4NB9D 3GZXA 4HJLA 2BCCE 3VMGD 1G8KB 4QDDA 4QURA 2XR8A 2A06E 4QUQA 5HL4A 2JO6A 2ZT9D 1Z01A 3BCCE 2YFIA 2NVFA 3GTEA 3L75E 3N0QA 2DE7D 1NTZE 1NTKE 2HMNA 2XSOA 2E76D 1SQBE 3DQYA 4HM8A 1WW9A 4AIVA 2HMLA 4AAYB 4H44D 2GBXA 2Q3WA 4P1BH 1UUVA 3H1HE 3GL2A 2GBWA 4NBHD 1PPJE 4U3FE 2JZAA 1JM1A 4NBED 5KLVE 3CWBE 1EG9A 4PD4E 3FOUA 2HMMA 1BE3E 1Z03A 1SQPE 4HM1A 2NUKA 3EN1A 1O7MA 4H0LD 5AEUA 3GCEA 3GKEA 1NTME 1O7WA 1SQQE 2QJKC 1O7PA 3GKQA 2BMRA 2QPZA 4HM0A 2NVEA 3VMIA 4NBFA 3CX5E 1KB9E 1NYKA 4HM4A 3C0DA 2HMOA 3EQQA 4HKVA 3VMGA 3H1KE 3VMID 4NB9A 1P84E 1SJGA 2BMQA 1KYOE 5KKZC 1BCCE 1WQLA 2NWFA 4NB8D 2E4QA 4QDFB 1UUWA 3VCPA 1FQTA 4QCKA 2NUMA 4HM7A 4PV1D 3D89A 2FYNC 3TGUE 4NBGD 3VMHA 1Z02A 4NBCA 3L71E 3H1LE 3L72E 1VCKA 1SQXE 4QDCA 2YIUC 4NBEA 2E4PA 2ZYLA 1SQVE 2QJYC 3GTSA 3L74E 4HM6A 3AZCA 2E75D 3GZYA 2FYUE 4NBBA 4QDFA 1ZRTE 1O7GA 1O7HA 2HMJA 2YFLA 4NBDD 3H1JE 4NBFD 2BMOA 1O7NA 2E74D 2QJPC 1RIEA 2YVJB 4NBAD 2DE6D 4NBAA 4H13D 2DE6A 3L70E 2DE7A 3L73E 1Q90C 1NU1E 2D2CD 1VF5D 2HMKA 5KLIC 5BOKA 4NBDA 4OGQD 2B1XA 2IBZE 1NDOA 3GOBA 4P1CH 1ULJA 4NBBD 4HM2A 4QUPA 2XSHA 3H1IE 4HM5A 2XRXA 1L0NE 1G8JB 2CKFA 2DE5D 3CXHE 1PP9E 4NBHA 1VM9A 2YFJA 5CXMA 1RFSA
chains in the Genus database with same CATH superfamily
1EZVE 4NBGA 3GB4A 4NBCD 3GCFA 2NVGA 3VMHD 5AEWA 3GL0A 4EMJB 2B24A 3VCAA 4NB8A 2I7FA 4HM3A 1L0LE 1ULIA 2DE5A 4NB9D 3GZXA 4HJLA 2BCCE 3VMGD 1G8KB 4QDDA 4QURA 2XR8A 2A06E 4QUQA 5HL4A 2JO6A 2ZT9D 1Z01A 3BCCE 2YFIA 2NVFA 3GTEA 3L75E 3N0QA 2DE7D 1NTZE 1NTKE 2HMNA 2XSOA 2E76D 1SQBE 3DQYA 4HM8A 1WW9A 4AIVA 2HMLA 4AAYB 4H44D 2GBXA 2Q3WA 4P1BH 1UUVA 3H1HE 3GL2A 2GBWA 4NBHD 1PPJE 4U3FE 2JZAA 1JM1A 4NBED 5KLVE 3CWBE 1EG9A 4PD4E 3FOUA 2HMMA 1BE3E 1Z03A 1SQPE 4HM1A 2NUKA 3EN1A 1O7MA 4H0LD 5AEUA 3GCEA 3GKEA 1NTME 1O7WA 1SQQE 2QJKC 1O7PA 3GKQA 2BMRA 2QPZA 4HM0A 2NVEA 3VMIA 4NBFA 3CX5E 1KB9E 1NYKA 4HM4A 3C0DA 2HMOA 3EQQA 4HKVA 3VMGA 3H1KE 3VMID 4NB9A 1P84E 1SJGA 2BMQA 1KYOE 5KKZC 1BCCE 1WQLA 2NWFA 4NB8D 2E4QA 4QDFB 1UUWA 3VCPA 1FQTA 4QCKA 2NUMA 4HM7A 4PV1D 3D89A 2FYNC 3TGUE 4NBGD 3VMHA 1Z02A 4NBCA 3L71E 3H1LE 3L72E 1VCKA 1SQXE 4QDCA 2YIUC 4NBEA 2E4PA 2ZYLA 1SQVE 2QJYC 3GTSA 3L74E 4HM6A 3AZCA 2E75D 3GZYA 2FYUE 4NBBA 4QDFA 1ZRTE 1O7GA 1O7HA 2HMJA 2YFLA 4NBDD 3H1JE 4NBFD 2BMOA 1O7NA 2E74D 2QJPC 1RIEA 2YVJB 4NBAD 2DE6D 4NBAA 4H13D 2DE6A 3L70E 2DE7A 3L73E 1Q90C 1NU1E 2D2CD 1VF5D 2HMKA 5KLIC 5BOKA 4NBDA 4OGQD 2B1XA 2IBZE 1NDOA 3GOBA 4P1CH 1ULJA 4NBBD 4HM2A 4QUPA 2XSHA 3H1IE 4HM5A 2XRXA 1L0NE 1G8JB 2CKFA 2DE5D 3CXHE 1PP9E 4NBHA 1VM9A 2YFJA 5CXMA 1RFSA
chains in the Genus database with same CATH topology
1EZVE 4NBGA 3GB4A 4NBCD 3GCFA 2NVGA 3VMHD 5AEWA 3GL0A 4EMJB 2B24A 3VCAA 4NB8A 2I7FA 4HM3A 1L0LE 1ULIA 2DE5A 4NB9D 3GZXA 4HJLA 2BCCE 3VMGD 1G8KB 4QDDA 4QURA 2XR8A 2A06E 4QUQA 5HL4A 2JO6A 2ZT9D 1Z01A 3BCCE 2YFIA 2NVFA 3GTEA 3L75E 3N0QA 2DE7D 1NTZE 1NTKE 2HMNA 2XSOA 2E76D 1SQBE 3DQYA 4HM8A 1WW9A 4AIVA 2HMLA 4AAYB 4H44D 2GBXA 2Q3WA 4P1BH 1UUVA 3H1HE 3GL2A 2GBWA 4NBHD 1PPJE 4U3FE 2JZAA 1JM1A 4NBED 5KLVE 3CWBE 1EG9A 4PD4E 3FOUA 2HMMA 1BE3E 1Z03A 1SQPE 4HM1A 2NUKA 3EN1A 1O7MA 4H0LD 5AEUA 3GCEA 3GKEA 1NTME 1O7WA 1SQQE 2QJKC 1O7PA 3GKQA 2BMRA 2QPZA 4HM0A 2NVEA 3VMIA 4NBFA 3CX5E 1KB9E 1NYKA 4HM4A 3C0DA 2HMOA 3EQQA 4HKVA 3VMGA 3H1KE 3VMID 4NB9A 1P84E 1SJGA 2BMQA 1KYOE 5KKZC 1BCCE 1WQLA 2NWFA 4NB8D 2E4QA 4QDFB 1UUWA 3VCPA 1FQTA 4QCKA 2NUMA 4HM7A 4PV1D 3D89A 2FYNC 3TGUE 4NBGD 3VMHA 1Z02A 4NBCA 3L71E 3H1LE 3L72E 1VCKA 1SQXE 4QDCA 2YIUC 4NBEA 2E4PA 2ZYLA 1SQVE 2QJYC 3GTSA 3L74E 4HM6A 3AZCA 2E75D 3GZYA 2FYUE 4NBBA 4QDFA 1ZRTE 1O7GA 1O7HA 2HMJA 2YFLA 4NBDD 3H1JE 4NBFD 2BMOA 1O7NA 2E74D 2QJPC 1RIEA 2YVJB 4NBAD 2DE6D 4NBAA 4H13D 2DE6A 3L70E 2DE7A 3L73E 1Q90C 1NU1E 2D2CD 1VF5D 2HMKA 5KLIC 5BOKA 4NBDA 4OGQD 2B1XA 2IBZE 1NDOA 3GOBA 4P1CH 1ULJA 4NBBD 4HM2A 4QUPA 2XSHA 3H1IE 4HM5A 2XRXA 1L0NE 1G8JB 2CKFA 2DE5D 3CXHE 1PP9E 4NBHA 1VM9A 2YFJA 5CXMA 1RFSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EZV E;  4NBG A;  3GB4 A;  4NBC D;  3GCF A;  2NVG A;  3VMH D;  5AEW A;  3GL0 A;  4EMJ B;  2B24 A;  3VCA A;  4NB8 A;  2I7F A;  4HM3 A;  1L0L E;  1ULI A;  2DE5 A;  4NB9 D;  3GZX A;  4HJL A;  2BCC E;  3VMG D;  1G8K B;  4QDD A;  4QUR A;  2XR8 A;  2A06 E;  4QUQ A;  5HL4 A;  2JO6 A;  2ZT9 D;  1Z01 A;  3BCC E;  2YFI A;  2NVF A;  3GTE A;  3L75 E;  3N0Q A;  2DE7 D;  1NTZ E;  1NTK E;  2HMN A;  2XSO A;  2E76 D;  1SQB E;  3DQY A;  4HM8 A;  1WW9 A;  4AIV A;  2HML A;  4AAY B;  4H44 D;  2GBX A;  2Q3W A;  4P1B H;  1UUV A;  3H1H E;  3GL2 A;  2GBW A;  4NBH D;  1PPJ E;  4U3F E;  2JZA A;  1JM1 A;  4NBE D;  5KLV E;  3CWB E;  1EG9 A;  4PD4 E;  3FOU A;  2HMM A;  1BE3 E;  1Z03 A;  1SQP E;  4HM1 A;  2NUK A;  3EN1 A;  1O7M A;  4H0L D;  5AEU A;  3GCE A;  3GKE A;  1NTM E;  1O7W A;  1SQQ E;  2QJK C;  1O7P A;  3GKQ A;  2BMR A;  2QPZ A;  4HM0 A;  2NVE A;  3VMI A;  4NBF A;  3CX5 E;  1KB9 E;  1NYK A;  4HM4 A;  3C0D A;  2HMO A;  3EQQ A;  4HKV A;  3VMG A;  3H1K E;  3VMI D;  4NB9 A;  1P84 E;  1SJG A;  2BMQ A;  1KYO E;  5KKZ C;  1BCC E;  1WQL A;  2NWF A;  4NB8 D;  2E4Q A;  4QDF B;  1UUW A;  3VCP A;  1FQT A;  4QCK A;  2NUM A;  4HM7 A;  4PV1 D;  3D89 A;  2FYN C;  3TGU E;  4NBG D;  3VMH A;  1Z02 A;  4NBC A;  3L71 E;  3H1L E;  3L72 E;  1VCK A;  1SQX E;  4QDC A;  2YIU C;  4NBE A;  2E4P A;  2ZYL A;  1SQV E;  2QJY C;  3GTS A;  3L74 E;  4HM6 A;  3AZC A;  2E75 D;  3GZY A;  2FYU E;  4NBB A;  4QDF A;  1ZRT E;  1O7G A;  1O7H A;  2HMJ A;  2YFL A;  4NBD D;  3H1J E;  4NBF D;  2BMO A;  1O7N A;  2E74 D;  2QJP C;  1RIE A;  2YVJ B;  4NBA D;  2DE6 D;  4NBA A;  4H13 D;  2DE6 A;  3L70 E;  2DE7 A;  3L73 E;  1Q90 C;  1NU1 E;  2D2C D;  1VF5 D;  2HMK A;  5KLI C;  5BOK A;  4NBD A;  4OGQ D;  2B1X A;  2IBZ E;  1NDO A;  3GOB A;  4P1C H;  1ULJ A;  4NBB D;  4HM2 A;  4QUP A;  2XSH A;  3H1I E;  4HM5 A;  2XRX A;  1L0N E;  1G8J B;  2CKF A;  2DE5 D;  3CXH E;  1PP9 E;  4NBH A;  1VM9 A;  2YFJ A;  5CXM A;  1RFS A; 
#chains in the Genus database with same CATH topology
 1EZV E;  4NBG A;  3GB4 A;  4NBC D;  3GCF A;  2NVG A;  3VMH D;  5AEW A;  3GL0 A;  4EMJ B;  2B24 A;  3VCA A;  4NB8 A;  2I7F A;  4HM3 A;  1L0L E;  1ULI A;  2DE5 A;  4NB9 D;  3GZX A;  4HJL A;  2BCC E;  3VMG D;  1G8K B;  4QDD A;  4QUR A;  2XR8 A;  2A06 E;  4QUQ A;  5HL4 A;  2JO6 A;  2ZT9 D;  1Z01 A;  3BCC E;  2YFI A;  2NVF A;  3GTE A;  3L75 E;  3N0Q A;  2DE7 D;  1NTZ E;  1NTK E;  2HMN A;  2XSO A;  2E76 D;  1SQB E;  3DQY A;  4HM8 A;  1WW9 A;  4AIV A;  2HML A;  4AAY B;  4H44 D;  2GBX A;  2Q3W A;  4P1B H;  1UUV A;  3H1H E;  3GL2 A;  2GBW A;  4NBH D;  1PPJ E;  4U3F E;  2JZA A;  1JM1 A;  4NBE D;  5KLV E;  3CWB E;  1EG9 A;  4PD4 E;  3FOU A;  2HMM A;  1BE3 E;  1Z03 A;  1SQP E;  4HM1 A;  2NUK A;  3EN1 A;  1O7M A;  4H0L D;  5AEU A;  3GCE A;  3GKE A;  1NTM E;  1O7W A;  1SQQ E;  2QJK C;  1O7P A;  3GKQ A;  2BMR A;  2QPZ A;  4HM0 A;  2NVE A;  3VMI A;  4NBF A;  3CX5 E;  1KB9 E;  1NYK A;  4HM4 A;  3C0D A;  2HMO A;  3EQQ A;  4HKV A;  3VMG A;  3H1K E;  3VMI D;  4NB9 A;  1P84 E;  1SJG A;  2BMQ A;  1KYO E;  5KKZ C;  1BCC E;  1WQL A;  2NWF A;  4NB8 D;  2E4Q A;  4QDF B;  1UUW A;  3VCP A;  1FQT A;  4QCK A;  2NUM A;  4HM7 A;  4PV1 D;  3D89 A;  2FYN C;  3TGU E;  4NBG D;  3VMH A;  1Z02 A;  4NBC A;  3L71 E;  3H1L E;  3L72 E;  1VCK A;  1SQX E;  4QDC A;  2YIU C;  4NBE A;  2E4P A;  2ZYL A;  1SQV E;  2QJY C;  3GTS A;  3L74 E;  4HM6 A;  3AZC A;  2E75 D;  3GZY A;  2FYU E;  4NBB A;  4QDF A;  1ZRT E;  1O7G A;  1O7H A;  2HMJ A;  2YFL A;  4NBD D;  3H1J E;  4NBF D;  2BMO A;  1O7N A;  2E74 D;  2QJP C;  1RIE A;  2YVJ B;  4NBA D;  2DE6 D;  4NBA A;  4H13 D;  2DE6 A;  3L70 E;  2DE7 A;  3L73 E;  1Q90 C;  1NU1 E;  2D2C D;  1VF5 D;  2HMK A;  5KLI C;  5BOK A;  4NBD A;  4OGQ D;  2B1X A;  2IBZ E;  1NDO A;  3GOB A;  4P1C H;  1ULJ A;  4NBB D;  4HM2 A;  4QUP A;  2XSH A;  3H1I E;  4HM5 A;  2XRX A;  1L0N E;  1G8J B;  2CKF A;  2DE5 D;  3CXH E;  1PP9 E;  4NBH A;  1VM9 A;  2YFJ A;  5CXM A;  1RFS A; 
#chains in the Genus database with same CATH homology
 1EZV E;  4NBG A;  3GB4 A;  4NBC D;  3GCF A;  2NVG A;  3VMH D;  5AEW A;  3GL0 A;  4EMJ B;  2B24 A;  3VCA A;  4NB8 A;  2I7F A;  4HM3 A;  1L0L E;  1ULI A;  2DE5 A;  4NB9 D;  3GZX A;  4HJL A;  2BCC E;  3VMG D;  1G8K B;  4QDD A;  4QUR A;  2XR8 A;  2A06 E;  4QUQ A;  5HL4 A;  2JO6 A;  2ZT9 D;  1Z01 A;  3BCC E;  2YFI A;  2NVF A;  3GTE A;  3L75 E;  3N0Q A;  2DE7 D;  1NTZ E;  1NTK E;  2HMN A;  2XSO A;  2E76 D;  1SQB E;  3DQY A;  4HM8 A;  1WW9 A;  4AIV A;  2HML A;  4AAY B;  4H44 D;  2GBX A;  2Q3W A;  4P1B H;  1UUV A;  3H1H E;  3GL2 A;  2GBW A;  4NBH D;  1PPJ E;  4U3F E;  2JZA A;  1JM1 A;  4NBE D;  5KLV E;  3CWB E;  1EG9 A;  4PD4 E;  3FOU A;  2HMM A;  1BE3 E;  1Z03 A;  1SQP E;  4HM1 A;  2NUK A;  3EN1 A;  1O7M A;  4H0L D;  5AEU A;  3GCE A;  3GKE A;  1NTM E;  1O7W A;  1SQQ E;  2QJK C;  1O7P A;  3GKQ A;  2BMR A;  2QPZ A;  4HM0 A;  2NVE A;  3VMI A;  4NBF A;  3CX5 E;  1KB9 E;  1NYK A;  4HM4 A;  3C0D A;  2HMO A;  3EQQ A;  4HKV A;  3VMG A;  3H1K E;  3VMI D;  4NB9 A;  1P84 E;  1SJG A;  2BMQ A;  1KYO E;  5KKZ C;  1BCC E;  1WQL A;  2NWF A;  4NB8 D;  2E4Q A;  4QDF B;  1UUW A;  3VCP A;  1FQT A;  4QCK A;  2NUM A;  4HM7 A;  4PV1 D;  3D89 A;  2FYN C;  3TGU E;  4NBG D;  3VMH A;  1Z02 A;  4NBC A;  3L71 E;  3H1L E;  3L72 E;  1VCK A;  1SQX E;  4QDC A;  2YIU C;  4NBE A;  2E4P A;  2ZYL A;  1SQV E;  2QJY C;  3GTS A;  3L74 E;  4HM6 A;  3AZC A;  2E75 D;  3GZY A;  2FYU E;  4NBB A;  4QDF A;  1ZRT E;  1O7G A;  1O7H A;  2HMJ A;  2YFL A;  4NBD D;  3H1J E;  4NBF D;  2BMO A;  1O7N A;  2E74 D;  2QJP C;  1RIE A;  2YVJ B;  4NBA D;  2DE6 D;  4NBA A;  4H13 D;  2DE6 A;  3L70 E;  2DE7 A;  3L73 E;  1Q90 C;  1NU1 E;  2D2C D;  1VF5 D;  2HMK A;  5KLI C;  5BOK A;  4NBD A;  4OGQ D;  2B1X A;  2IBZ E;  1NDO A;  3GOB A;  4P1C H;  1ULJ A;  4NBB D;  4HM2 A;  4QUP A;  2XSH A;  3H1I E;  4HM5 A;  2XRX A;  1L0N E;  1G8J B;  2CKF A;  2DE5 D;  3CXH E;  1PP9 E;  4NBH A;  1VM9 A;  2YFJ A;  5CXM A;  1RFS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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