1O7WA

Naphthalene 1,2-dioxygenase, fully reduced form
Total Genus 162
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
447
structure length
447
Chain Sequence
b'MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
publication title Crystal Structure of Naphthalene Dioxygenase: Side-on Binding of Dioxygen to Iron
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Oxidoreductase
total genus 162
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2002-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1o7wA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1o7wA01
4QUPA 2FYUE 4NBHD 5AEUA 4H0LD 2DE7D 2JO6A 2BCCE 1FQTA 3GKQA 2HMMA 2XSHA 3H1JE 4QDCA 2HMNA 2NVFA 1ULIA 4NBCD 4U3FE 1PP9E 4NBBA 2DE6A 2YVJB 3VMGD 1BE3E 1WQLA 1KYOE 1SQPE 3H1KE 4H44D 3VMHD 5KLIC 3VCAA 4EMJB 2QJPC 3GZYA 2IBZE 4QDFA 3DQYA 1Z01A 3C0DA 1UUVA 5AEWA 4PD4E 3VMID 1SQBE 2A06E 2GBWA 1O7NA 3GL2A 1SJGA 1O7GA 2E75D 2YFLA 2I7FA 2XRXA 3GOBA 1JM1A 1VM9A 5CXMA 4AAYB 3GCFA 1P84E 4NBAD 4P1CH 2NUKA 5KKZC 3L73E 1L0NE 4NBFA 1NTME 4HM0A 2Q3WA 2YIUC 4NBGA 2E76D 2BMRA 2HMLA 2NWFA 4H13D 1NYKA 4HJLA 3H1IE 3L72E 1Z03A 2BMOA 1BCCE 4P1BH 1VCKA 3GTSA 4HM8A 3TGUE 3GTEA 4QDFB 4NBHA 1NDOA 3N0QA 3GKEA 2DE5D 2DE7A 4NB9D 2JZAA 4NB8D 3L74E 4QURA 3GB4A 4QDDA 4QUQA 1RIEA 2ZYLA 2B1XA 1SQQE 1UUWA 1NTZE 4NBDD 2HMJA 5BOKA 4NBEA 4HM4A 3CWBE 4HM1A 3D89A 3VMHA 3EQQA 2HMKA 4PV1D 1O7MA 4NBFD 2E4QA 4NBBD 1SQVE 3GCEA 4HM7A 2DE6D 1O7PA 2NVGA 1RFSA 4HM2A 3VMIA 1VF5D 3CXHE 3BCCE 2XSOA 1NTKE 1KB9E 2QPZA 2QJKC 4AIVA 1L0LE 4QCKA 5HL4A 2QJYC 3CX5E 4NBAA 3L70E 1WW9A 2E4PA 1EZVE 1NU1E 3L71E 4HM6A 4NBCA 3VMGA 3H1HE 2YFIA 4HM5A 2XR8A 2NVEA 4NBED 2D2CD 1SQXE 2NUMA 2HMOA 2BMQA 3H1LE 3GL0A 1G8KB 3EN1A 2ZT9D 1ZRTE 1PPJE 2B24A 4NBGD 2GBXA 2CKFA 1EG9A 1Q90C 2E74D 4HKVA 2DE5A 4NB9A 1ULJA 5KLVE 1Z02A 3L75E 4OGQD 4NB8A 4HM3A 3GZXA 2FYNC 1G8JB 3VCPA 3AZCA 2YFJA 1O7HA 4NBDA 3FOUA 1O7WA
chains in the Genus database with same CATH superfamily
4QUPA 2FYUE 4NBHD 5AEUA 4H0LD 2DE7D 2JO6A 2BCCE 1FQTA 3GKQA 2HMMA 2XSHA 3H1JE 4QDCA 2HMNA 2NVFA 1ULIA 4NBCD 4U3FE 1PP9E 4NBBA 2DE6A 2YVJB 3VMGD 1BE3E 1WQLA 1KYOE 1SQPE 3H1KE 4H44D 3VMHD 5KLIC 3VCAA 4EMJB 2QJPC 3GZYA 2IBZE 4QDFA 3DQYA 1Z01A 3C0DA 1UUVA 5AEWA 4PD4E 3VMID 1SQBE 2A06E 2GBWA 1O7NA 3GL2A 1SJGA 1O7GA 2E75D 2YFLA 2I7FA 2XRXA 3GOBA 1JM1A 1VM9A 5CXMA 4AAYB 3GCFA 1P84E 4NBAD 4P1CH 2NUKA 5KKZC 3L73E 1L0NE 4NBFA 1NTME 4HM0A 2Q3WA 2YIUC 4NBGA 2E76D 2BMRA 2HMLA 2NWFA 4H13D 1NYKA 4HJLA 3H1IE 3L72E 1Z03A 2BMOA 1BCCE 4P1BH 1VCKA 3GTSA 4HM8A 3TGUE 3GTEA 4QDFB 4NBHA 1NDOA 3N0QA 3GKEA 2DE5D 2DE7A 4NB9D 2JZAA 4NB8D 3L74E 4QURA 3GB4A 4QDDA 4QUQA 1RIEA 2ZYLA 2B1XA 1SQQE 1UUWA 1NTZE 4NBDD 2HMJA 5BOKA 4NBEA 4HM4A 3CWBE 4HM1A 3D89A 3VMHA 3EQQA 2HMKA 4PV1D 1O7MA 4NBFD 2E4QA 4NBBD 1SQVE 3GCEA 4HM7A 2DE6D 1O7PA 2NVGA 1RFSA 4HM2A 3VMIA 1VF5D 3CXHE 3BCCE 2XSOA 1NTKE 1KB9E 2QPZA 2QJKC 4AIVA 1L0LE 4QCKA 5HL4A 2QJYC 3CX5E 4NBAA 3L70E 1WW9A 2E4PA 1EZVE 1NU1E 3L71E 4HM6A 4NBCA 3VMGA 3H1HE 2YFIA 4HM5A 2XR8A 2NVEA 4NBED 2D2CD 1SQXE 2NUMA 2HMOA 2BMQA 3H1LE 3GL0A 1G8KB 3EN1A 2ZT9D 1ZRTE 1PPJE 2B24A 4NBGD 2GBXA 2CKFA 1EG9A 1Q90C 2E74D 4HKVA 2DE5A 4NB9A 1ULJA 5KLVE 1Z02A 3L75E 4OGQD 4NB8A 4HM3A 3GZXA 2FYNC 1G8JB 3VCPA 3AZCA 2YFJA 1O7HA 4NBDA 3FOUA 1O7WA
chains in the Genus database with same CATH topology
4QUPA 2FYUE 4NBHD 5AEUA 4H0LD 2DE7D 2JO6A 2BCCE 1FQTA 3GKQA 2HMMA 2XSHA 3H1JE 4QDCA 2HMNA 2NVFA 1ULIA 4NBCD 4U3FE 1PP9E 4NBBA 2DE6A 2YVJB 3VMGD 1BE3E 1WQLA 1KYOE 1SQPE 3H1KE 4H44D 3VMHD 5KLIC 3VCAA 4EMJB 2QJPC 3GZYA 2IBZE 4QDFA 3DQYA 1Z01A 3C0DA 1UUVA 5AEWA 4PD4E 3VMID 1SQBE 2A06E 2GBWA 1O7NA 3GL2A 1SJGA 1O7GA 2E75D 2YFLA 2I7FA 2XRXA 3GOBA 1JM1A 1VM9A 5CXMA 4AAYB 3GCFA 1P84E 4NBAD 4P1CH 2NUKA 5KKZC 3L73E 1L0NE 4NBFA 1NTME 4HM0A 2Q3WA 2YIUC 4NBGA 2E76D 2BMRA 2HMLA 2NWFA 4H13D 1NYKA 4HJLA 3H1IE 3L72E 1Z03A 2BMOA 1BCCE 4P1BH 1VCKA 3GTSA 4HM8A 3TGUE 3GTEA 4QDFB 4NBHA 1NDOA 3N0QA 3GKEA 2DE5D 2DE7A 4NB9D 2JZAA 4NB8D 3L74E 4QURA 3GB4A 4QDDA 4QUQA 1RIEA 2ZYLA 2B1XA 1SQQE 1UUWA 1NTZE 4NBDD 2HMJA 5BOKA 4NBEA 4HM4A 3CWBE 4HM1A 3D89A 3VMHA 3EQQA 2HMKA 4PV1D 1O7MA 4NBFD 2E4QA 4NBBD 1SQVE 3GCEA 4HM7A 2DE6D 1O7PA 2NVGA 1RFSA 4HM2A 3VMIA 1VF5D 3CXHE 3BCCE 2XSOA 1NTKE 1KB9E 2QPZA 2QJKC 4AIVA 1L0LE 4QCKA 5HL4A 2QJYC 3CX5E 4NBAA 3L70E 1WW9A 2E4PA 1EZVE 1NU1E 3L71E 4HM6A 4NBCA 3VMGA 3H1HE 2YFIA 4HM5A 2XR8A 2NVEA 4NBED 2D2CD 1SQXE 2NUMA 2HMOA 2BMQA 3H1LE 3GL0A 1G8KB 3EN1A 2ZT9D 1ZRTE 1PPJE 2B24A 4NBGD 2GBXA 2CKFA 1EG9A 1Q90C 2E74D 4HKVA 2DE5A 4NB9A 1ULJA 5KLVE 1Z02A 3L75E 4OGQD 4NB8A 4HM3A 3GZXA 2FYNC 1G8JB 3VCPA 3AZCA 2YFJA 1O7HA 4NBDA 3FOUA 1O7WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QUP A;  2FYU E;  4NBH D;  5AEU A;  4H0L D;  2DE7 D;  2JO6 A;  2BCC E;  1FQT A;  3GKQ A;  2HMM A;  2XSH A;  3H1J E;  4QDC A;  2HMN A;  2NVF A;  1ULI A;  4NBC D;  4U3F E;  1PP9 E;  4NBB A;  2DE6 A;  2YVJ B;  3VMG D;  1BE3 E;  1WQL A;  1KYO E;  1SQP E;  3H1K E;  4H44 D;  3VMH D;  5KLI C;  3VCA A;  4EMJ B;  2QJP C;  3GZY A;  2IBZ E;  4QDF A;  3DQY A;  1Z01 A;  3C0D A;  1UUV A;  5AEW A;  4PD4 E;  3VMI D;  1SQB E;  2A06 E;  2GBW A;  1O7N A;  3GL2 A;  1SJG A;  1O7G A;  2E75 D;  2YFL A;  2I7F A;  2XRX A;  3GOB A;  1JM1 A;  1VM9 A;  5CXM A;  4AAY B;  3GCF A;  1P84 E;  4NBA D;  4P1C H;  2NUK A;  5KKZ C;  3L73 E;  1L0N E;  4NBF A;  1NTM E;  4HM0 A;  2Q3W A;  2YIU C;  4NBG A;  2E76 D;  2BMR A;  2HML A;  2NWF A;  4H13 D;  1NYK A;  4HJL A;  3H1I E;  3L72 E;  1Z03 A;  2BMO A;  1BCC E;  4P1B H;  1VCK A;  3GTS A;  4HM8 A;  3TGU E;  3GTE A;  4QDF B;  4NBH A;  1NDO A;  3N0Q A;  3GKE A;  2DE5 D;  2DE7 A;  4NB9 D;  2JZA A;  4NB8 D;  3L74 E;  4QUR A;  3GB4 A;  4QDD A;  4QUQ A;  1RIE A;  2ZYL A;  2B1X A;  1SQQ E;  1UUW A;  1NTZ E;  4NBD D;  2HMJ A;  5BOK A;  4NBE A;  4HM4 A;  3CWB E;  4HM1 A;  3D89 A;  3VMH A;  3EQQ A;  2HMK A;  4PV1 D;  1O7M A;  4NBF D;  2E4Q A;  4NBB D;  1SQV E;  3GCE A;  4HM7 A;  2DE6 D;  1O7P A;  2NVG A;  1RFS A;  4HM2 A;  3VMI A;  1VF5 D;  3CXH E;  3BCC E;  2XSO A;  1NTK E;  1KB9 E;  2QPZ A;  2QJK C;  4AIV A;  1L0L E;  4QCK A;  5HL4 A;  2QJY C;  3CX5 E;  4NBA A;  3L70 E;  1WW9 A;  2E4P A;  1EZV E;  1NU1 E;  3L71 E;  4HM6 A;  4NBC A;  3VMG A;  3H1H E;  2YFI A;  4HM5 A;  2XR8 A;  2NVE A;  4NBE D;  2D2C D;  1SQX E;  2NUM A;  2HMO A;  2BMQ A;  3H1L E;  3GL0 A;  1G8K B;  3EN1 A;  2ZT9 D;  1ZRT E;  1PPJ E;  2B24 A;  4NBG D;  2GBX A;  2CKF A;  1EG9 A;  1Q90 C;  2E74 D;  4HKV A;  2DE5 A;  4NB9 A;  1ULJ A;  5KLV E;  1Z02 A;  3L75 E;  4OGQ D;  4NB8 A;  4HM3 A;  3GZX A;  2FYN C;  1G8J B;  3VCP A;  3AZC A;  2YFJ A;  1O7H A;  4NBD A;  3FOU A;  1O7W A; 
#chains in the Genus database with same CATH topology
 4QUP A;  2FYU E;  4NBH D;  5AEU A;  4H0L D;  2DE7 D;  2JO6 A;  2BCC E;  1FQT A;  3GKQ A;  2HMM A;  2XSH A;  3H1J E;  4QDC A;  2HMN A;  2NVF A;  1ULI A;  4NBC D;  4U3F E;  1PP9 E;  4NBB A;  2DE6 A;  2YVJ B;  3VMG D;  1BE3 E;  1WQL A;  1KYO E;  1SQP E;  3H1K E;  4H44 D;  3VMH D;  5KLI C;  3VCA A;  4EMJ B;  2QJP C;  3GZY A;  2IBZ E;  4QDF A;  3DQY A;  1Z01 A;  3C0D A;  1UUV A;  5AEW A;  4PD4 E;  3VMI D;  1SQB E;  2A06 E;  2GBW A;  1O7N A;  3GL2 A;  1SJG A;  1O7G A;  2E75 D;  2YFL A;  2I7F A;  2XRX A;  3GOB A;  1JM1 A;  1VM9 A;  5CXM A;  4AAY B;  3GCF A;  1P84 E;  4NBA D;  4P1C H;  2NUK A;  5KKZ C;  3L73 E;  1L0N E;  4NBF A;  1NTM E;  4HM0 A;  2Q3W A;  2YIU C;  4NBG A;  2E76 D;  2BMR A;  2HML A;  2NWF A;  4H13 D;  1NYK A;  4HJL A;  3H1I E;  3L72 E;  1Z03 A;  2BMO A;  1BCC E;  4P1B H;  1VCK A;  3GTS A;  4HM8 A;  3TGU E;  3GTE A;  4QDF B;  4NBH A;  1NDO A;  3N0Q A;  3GKE A;  2DE5 D;  2DE7 A;  4NB9 D;  2JZA A;  4NB8 D;  3L74 E;  4QUR A;  3GB4 A;  4QDD A;  4QUQ A;  1RIE A;  2ZYL A;  2B1X A;  1SQQ E;  1UUW A;  1NTZ E;  4NBD D;  2HMJ A;  5BOK A;  4NBE A;  4HM4 A;  3CWB E;  4HM1 A;  3D89 A;  3VMH A;  3EQQ A;  2HMK A;  4PV1 D;  1O7M A;  4NBF D;  2E4Q A;  4NBB D;  1SQV E;  3GCE A;  4HM7 A;  2DE6 D;  1O7P A;  2NVG A;  1RFS A;  4HM2 A;  3VMI A;  1VF5 D;  3CXH E;  3BCC E;  2XSO A;  1NTK E;  1KB9 E;  2QPZ A;  2QJK C;  4AIV A;  1L0L E;  4QCK A;  5HL4 A;  2QJY C;  3CX5 E;  4NBA A;  3L70 E;  1WW9 A;  2E4P A;  1EZV E;  1NU1 E;  3L71 E;  4HM6 A;  4NBC A;  3VMG A;  3H1H E;  2YFI A;  4HM5 A;  2XR8 A;  2NVE A;  4NBE D;  2D2C D;  1SQX E;  2NUM A;  2HMO A;  2BMQ A;  3H1L E;  3GL0 A;  1G8K B;  3EN1 A;  2ZT9 D;  1ZRT E;  1PPJ E;  2B24 A;  4NBG D;  2GBX A;  2CKF A;  1EG9 A;  1Q90 C;  2E74 D;  4HKV A;  2DE5 A;  4NB9 A;  1ULJ A;  5KLV E;  1Z02 A;  3L75 E;  4OGQ D;  4NB8 A;  4HM3 A;  3GZX A;  2FYN C;  1G8J B;  3VCP A;  3AZC A;  2YFJ A;  1O7H A;  4NBD A;  3FOU A;  1O7W A; 
#chains in the Genus database with same CATH homology
 4QUP A;  2FYU E;  4NBH D;  5AEU A;  4H0L D;  2DE7 D;  2JO6 A;  2BCC E;  1FQT A;  3GKQ A;  2HMM A;  2XSH A;  3H1J E;  4QDC A;  2HMN A;  2NVF A;  1ULI A;  4NBC D;  4U3F E;  1PP9 E;  4NBB A;  2DE6 A;  2YVJ B;  3VMG D;  1BE3 E;  1WQL A;  1KYO E;  1SQP E;  3H1K E;  4H44 D;  3VMH D;  5KLI C;  3VCA A;  4EMJ B;  2QJP C;  3GZY A;  2IBZ E;  4QDF A;  3DQY A;  1Z01 A;  3C0D A;  1UUV A;  5AEW A;  4PD4 E;  3VMI D;  1SQB E;  2A06 E;  2GBW A;  1O7N A;  3GL2 A;  1SJG A;  1O7G A;  2E75 D;  2YFL A;  2I7F A;  2XRX A;  3GOB A;  1JM1 A;  1VM9 A;  5CXM A;  4AAY B;  3GCF A;  1P84 E;  4NBA D;  4P1C H;  2NUK A;  5KKZ C;  3L73 E;  1L0N E;  4NBF A;  1NTM E;  4HM0 A;  2Q3W A;  2YIU C;  4NBG A;  2E76 D;  2BMR A;  2HML A;  2NWF A;  4H13 D;  1NYK A;  4HJL A;  3H1I E;  3L72 E;  1Z03 A;  2BMO A;  1BCC E;  4P1B H;  1VCK A;  3GTS A;  4HM8 A;  3TGU E;  3GTE A;  4QDF B;  4NBH A;  1NDO A;  3N0Q A;  3GKE A;  2DE5 D;  2DE7 A;  4NB9 D;  2JZA A;  4NB8 D;  3L74 E;  4QUR A;  3GB4 A;  4QDD A;  4QUQ A;  1RIE A;  2ZYL A;  2B1X A;  1SQQ E;  1UUW A;  1NTZ E;  4NBD D;  2HMJ A;  5BOK A;  4NBE A;  4HM4 A;  3CWB E;  4HM1 A;  3D89 A;  3VMH A;  3EQQ A;  2HMK A;  4PV1 D;  1O7M A;  4NBF D;  2E4Q A;  4NBB D;  1SQV E;  3GCE A;  4HM7 A;  2DE6 D;  1O7P A;  2NVG A;  1RFS A;  4HM2 A;  3VMI A;  1VF5 D;  3CXH E;  3BCC E;  2XSO A;  1NTK E;  1KB9 E;  2QPZ A;  2QJK C;  4AIV A;  1L0L E;  4QCK A;  5HL4 A;  2QJY C;  3CX5 E;  4NBA A;  3L70 E;  1WW9 A;  2E4P A;  1EZV E;  1NU1 E;  3L71 E;  4HM6 A;  4NBC A;  3VMG A;  3H1H E;  2YFI A;  4HM5 A;  2XR8 A;  2NVE A;  4NBE D;  2D2C D;  1SQX E;  2NUM A;  2HMO A;  2BMQ A;  3H1L E;  3GL0 A;  1G8K B;  3EN1 A;  2ZT9 D;  1ZRT E;  1PPJ E;  2B24 A;  4NBG D;  2GBX A;  2CKF A;  1EG9 A;  1Q90 C;  2E74 D;  4HKV A;  2DE5 A;  4NB9 A;  1ULJ A;  5KLV E;  1Z02 A;  3L75 E;  4OGQ D;  4NB8 A;  4HM3 A;  3GZX A;  2FYN C;  1G8J B;  3VCP A;  3AZC A;  2YFJ A;  1O7H A;  4NBD A;  3FOU A;  1O7W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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