1O7WA

Naphthalene 1,2-dioxygenase, fully reduced form
Total Genus 162
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
publication title Crystal Structure of Naphthalene Dioxygenase: Side-on Binding of Dioxygen to Iron
pubmed doi rcsb
source organism Pseudomonas putida
total genus 162
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2002-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1o7wA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1o7wA01
3GTSA 1Q90C 4HM2A 1PP9E 1EG9A 4H13D 1KB9E 2QPZA 1NTME 2B1XA 2YFIA 2DE7A 3GCFA 1L0LE 1ULJA 2NVFA 3GTEA 2YFLA 4NB9D 4HKVA 4NBFD 2XSOA 2D2CD 1NU1E 4QURA 4HJLA 4NBBD 1PPJE 2QJPC 2NVGA 4HM8A 1VCKA 4U3FE 1SQXE 3CXHE 4NBAA 3H1KE 3H1HE 2HMOA 1VM9A 2IBZE 1G8JB 2E4QA 3C0DA 4PV1D 1EZVE 1RFSA 5HL4A 3VCAA 2DE5D 1SQVE 3H1LE 3VMID 3VCPA 2BMQA 3GL0A 4HM1A 4NBCD 1O7MA 4NBDD 4P1BH 2XSHA 4AIVA 4OGQD 1Z02A 2DE5A 3VMHA 1NTZE 4NBED 3AZCA 5CXMA 5AEWA 2ZT9D 2CKFA 2B24A 2NUKA 3GL2A 5KLIC 2FYUE 1UUWA 4NB9A 4NBGD 4NBFA 1WQLA 3CX5E 4HM0A 3VMGD 3L75E 1JM1A 2QJYC 4NBBA 2ZYLA 3GZYA 1O7GA 5KLVE 2GBXA 4NB8D 2YFJA 4QDDA 1O7HA 4EMJB 2HMNA 2E75D 1Z03A 4HM3A 4HM4A 3VMGA 2I7FA 1UUVA 2JO6A 4NB8A 3N0QA 1NDOA 3VMIA 4HM6A 1WW9A 3H1JE 4NBHD 4NBCA 2HMMA 4NBDA 2XR8A 2YVJB 5AEUA 1ULIA 2BMOA 1NTKE 2E76D 3FOUA 1KYOE 1BCCE 2DE6D 4QDFB 2BMRA 2NVEA 1FQTA 4QUQA 4NBHA 3L70E 2E4PA 4NBEA 3GB4A 3D89A 5BOKA 2E74D 1L0NE 1ZRTE 2DE7D 1P84E 1SQQE 1VF5D 3L74E 1SJGA 1RIEA 3EN1A 2HMLA 2DE6A 4HM7A 5KKZC 2JZAA 2HMJA 4H44D 2XRXA 2YIUC 4NBGA 2FYNC 2A06E 3DQYA 2BCCE 4HM5A 3GKQA 4QDCA 1Z01A 2Q3WA 3L73E 2QJKC 4NBAD 3EQQA 3GKEA 3L72E 1SQBE 3GZXA 3L71E 2NUMA 1O7NA 3TGUE 3GOBA 4PD4E 4H0LD 3GCEA 2GBWA 3H1IE 1O7PA 3CWBE 1O7WA 3BCCE 4QCKA 1BE3E 1SQPE 4QUPA 1G8KB 2NWFA 4AAYB 1NYKA 3VMHD 4QDFA 2HMKA 4P1CH
chains in the Genus database with same CATH superfamily
3GTSA 1Q90C 4HM2A 1PP9E 1EG9A 4H13D 1KB9E 2QPZA 1NTME 2B1XA 2YFIA 2DE7A 3GCFA 1L0LE 1ULJA 2NVFA 3GTEA 2YFLA 4NB9D 4HKVA 4NBFD 2XSOA 2D2CD 1NU1E 4QURA 4HJLA 4NBBD 1PPJE 2QJPC 2NVGA 4HM8A 1VCKA 4U3FE 1SQXE 3CXHE 4NBAA 3H1KE 3H1HE 2HMOA 1VM9A 2IBZE 1G8JB 2E4QA 3C0DA 4PV1D 1EZVE 1RFSA 5HL4A 3VCAA 2DE5D 1SQVE 3H1LE 3VMID 3VCPA 2BMQA 3GL0A 4HM1A 4NBCD 1O7MA 4NBDD 4P1BH 2XSHA 4AIVA 4OGQD 1Z02A 2DE5A 3VMHA 1NTZE 4NBED 3AZCA 5CXMA 5AEWA 2ZT9D 2CKFA 2B24A 2NUKA 3GL2A 5KLIC 2FYUE 1UUWA 4NB9A 4NBGD 4NBFA 1WQLA 3CX5E 4HM0A 3VMGD 3L75E 1JM1A 2QJYC 4NBBA 2ZYLA 3GZYA 1O7GA 5KLVE 2GBXA 4NB8D 2YFJA 4QDDA 1O7HA 4EMJB 2HMNA 2E75D 1Z03A 4HM3A 4HM4A 3VMGA 2I7FA 1UUVA 2JO6A 4NB8A 3N0QA 1NDOA 3VMIA 4HM6A 1WW9A 3H1JE 4NBHD 4NBCA 2HMMA 4NBDA 2XR8A 2YVJB 5AEUA 1ULIA 2BMOA 1NTKE 2E76D 3FOUA 1KYOE 1BCCE 2DE6D 4QDFB 2BMRA 2NVEA 1FQTA 4QUQA 4NBHA 3L70E 2E4PA 4NBEA 3GB4A 3D89A 5BOKA 2E74D 1L0NE 1ZRTE 2DE7D 1P84E 1SQQE 1VF5D 3L74E 1SJGA 1RIEA 3EN1A 2HMLA 2DE6A 4HM7A 5KKZC 2JZAA 2HMJA 4H44D 2XRXA 2YIUC 4NBGA 2FYNC 2A06E 3DQYA 2BCCE 4HM5A 3GKQA 4QDCA 1Z01A 2Q3WA 3L73E 2QJKC 4NBAD 3EQQA 3GKEA 3L72E 1SQBE 3GZXA 3L71E 2NUMA 1O7NA 3TGUE 3GOBA 4PD4E 4H0LD 3GCEA 2GBWA 3H1IE 1O7PA 3CWBE 1O7WA 3BCCE 4QCKA 1BE3E 1SQPE 4QUPA 1G8KB 2NWFA 4AAYB 1NYKA 3VMHD 4QDFA 2HMKA 4P1CH
chains in the Genus database with same CATH topology
3GTSA 1Q90C 4HM2A 1PP9E 1EG9A 4H13D 1KB9E 2QPZA 1NTME 2B1XA 2YFIA 2DE7A 3GCFA 1L0LE 1ULJA 2NVFA 3GTEA 2YFLA 4NB9D 4HKVA 4NBFD 2XSOA 2D2CD 1NU1E 4QURA 4HJLA 4NBBD 1PPJE 2QJPC 2NVGA 4HM8A 1VCKA 4U3FE 1SQXE 3CXHE 4NBAA 3H1KE 3H1HE 2HMOA 1VM9A 2IBZE 1G8JB 2E4QA 3C0DA 4PV1D 1EZVE 1RFSA 5HL4A 3VCAA 2DE5D 1SQVE 3H1LE 3VMID 3VCPA 2BMQA 3GL0A 4HM1A 4NBCD 1O7MA 4NBDD 4P1BH 2XSHA 4AIVA 4OGQD 1Z02A 2DE5A 3VMHA 1NTZE 4NBED 3AZCA 5CXMA 5AEWA 2ZT9D 2CKFA 2B24A 2NUKA 3GL2A 5KLIC 2FYUE 1UUWA 4NB9A 4NBGD 4NBFA 1WQLA 3CX5E 4HM0A 3VMGD 3L75E 1JM1A 2QJYC 4NBBA 2ZYLA 3GZYA 1O7GA 5KLVE 2GBXA 4NB8D 2YFJA 4QDDA 1O7HA 4EMJB 2HMNA 2E75D 1Z03A 4HM3A 4HM4A 3VMGA 2I7FA 1UUVA 2JO6A 4NB8A 3N0QA 1NDOA 3VMIA 4HM6A 1WW9A 3H1JE 4NBHD 4NBCA 2HMMA 4NBDA 2XR8A 2YVJB 5AEUA 1ULIA 2BMOA 1NTKE 2E76D 3FOUA 1KYOE 1BCCE 2DE6D 4QDFB 2BMRA 2NVEA 1FQTA 4QUQA 4NBHA 3L70E 2E4PA 4NBEA 3GB4A 3D89A 5BOKA 2E74D 1L0NE 1ZRTE 2DE7D 1P84E 1SQQE 1VF5D 3L74E 1SJGA 1RIEA 3EN1A 2HMLA 2DE6A 4HM7A 5KKZC 2JZAA 2HMJA 4H44D 2XRXA 2YIUC 4NBGA 2FYNC 2A06E 3DQYA 2BCCE 4HM5A 3GKQA 4QDCA 1Z01A 2Q3WA 3L73E 2QJKC 4NBAD 3EQQA 3GKEA 3L72E 1SQBE 3GZXA 3L71E 2NUMA 1O7NA 3TGUE 3GOBA 4PD4E 4H0LD 3GCEA 2GBWA 3H1IE 1O7PA 3CWBE 1O7WA 3BCCE 4QCKA 1BE3E 1SQPE 4QUPA 1G8KB 2NWFA 4AAYB 1NYKA 3VMHD 4QDFA 2HMKA 4P1CH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GTS A;  1Q90 C;  4HM2 A;  1PP9 E;  1EG9 A;  4H13 D;  1KB9 E;  2QPZ A;  1NTM E;  2B1X A;  2YFI A;  2DE7 A;  3GCF A;  1L0L E;  1ULJ A;  2NVF A;  3GTE A;  2YFL A;  4NB9 D;  4HKV A;  4NBF D;  2XSO A;  2D2C D;  1NU1 E;  4QUR A;  4HJL A;  4NBB D;  1PPJ E;  2QJP C;  2NVG A;  4HM8 A;  1VCK A;  4U3F E;  1SQX E;  3CXH E;  4NBA A;  3H1K E;  3H1H E;  2HMO A;  1VM9 A;  2IBZ E;  1G8J B;  2E4Q A;  3C0D A;  4PV1 D;  1EZV E;  1RFS A;  5HL4 A;  3VCA A;  2DE5 D;  1SQV E;  3H1L E;  3VMI D;  3VCP A;  2BMQ A;  3GL0 A;  4HM1 A;  4NBC D;  1O7M A;  4NBD D;  4P1B H;  2XSH A;  4AIV A;  4OGQ D;  1Z02 A;  2DE5 A;  3VMH A;  1NTZ E;  4NBE D;  3AZC A;  5CXM A;  5AEW A;  2ZT9 D;  2CKF A;  2B24 A;  2NUK A;  3GL2 A;  5KLI C;  2FYU E;  1UUW A;  4NB9 A;  4NBG D;  4NBF A;  1WQL A;  3CX5 E;  4HM0 A;  3VMG D;  3L75 E;  1JM1 A;  2QJY C;  4NBB A;  2ZYL A;  3GZY A;  1O7G A;  5KLV E;  2GBX A;  4NB8 D;  2YFJ A;  4QDD A;  1O7H A;  4EMJ B;  2HMN A;  2E75 D;  1Z03 A;  4HM3 A;  4HM4 A;  3VMG A;  2I7F A;  1UUV A;  2JO6 A;  4NB8 A;  3N0Q A;  1NDO A;  3VMI A;  4HM6 A;  1WW9 A;  3H1J E;  4NBH D;  4NBC A;  2HMM A;  4NBD A;  2XR8 A;  2YVJ B;  5AEU A;  1ULI A;  2BMO A;  1NTK E;  2E76 D;  3FOU A;  1KYO E;  1BCC E;  2DE6 D;  4QDF B;  2BMR A;  2NVE A;  1FQT A;  4QUQ A;  4NBH A;  3L70 E;  2E4P A;  4NBE A;  3GB4 A;  3D89 A;  5BOK A;  2E74 D;  1L0N E;  1ZRT E;  2DE7 D;  1P84 E;  1SQQ E;  1VF5 D;  3L74 E;  1SJG A;  1RIE A;  3EN1 A;  2HML A;  2DE6 A;  4HM7 A;  5KKZ C;  2JZA A;  2HMJ A;  4H44 D;  2XRX A;  2YIU C;  4NBG A;  2FYN C;  2A06 E;  3DQY A;  2BCC E;  4HM5 A;  3GKQ A;  4QDC A;  1Z01 A;  2Q3W A;  3L73 E;  2QJK C;  4NBA D;  3EQQ A;  3GKE A;  3L72 E;  1SQB E;  3GZX A;  3L71 E;  2NUM A;  1O7N A;  3TGU E;  3GOB A;  4PD4 E;  4H0L D;  3GCE A;  2GBW A;  3H1I E;  1O7P A;  3CWB E;  1O7W A;  3BCC E;  4QCK A;  1BE3 E;  1SQP E;  4QUP A;  1G8K B;  2NWF A;  4AAY B;  1NYK A;  3VMH D;  4QDF A;  2HMK A;  4P1C H; 
#chains in the Genus database with same CATH topology
 3GTS A;  1Q90 C;  4HM2 A;  1PP9 E;  1EG9 A;  4H13 D;  1KB9 E;  2QPZ A;  1NTM E;  2B1X A;  2YFI A;  2DE7 A;  3GCF A;  1L0L E;  1ULJ A;  2NVF A;  3GTE A;  2YFL A;  4NB9 D;  4HKV A;  4NBF D;  2XSO A;  2D2C D;  1NU1 E;  4QUR A;  4HJL A;  4NBB D;  1PPJ E;  2QJP C;  2NVG A;  4HM8 A;  1VCK A;  4U3F E;  1SQX E;  3CXH E;  4NBA A;  3H1K E;  3H1H E;  2HMO A;  1VM9 A;  2IBZ E;  1G8J B;  2E4Q A;  3C0D A;  4PV1 D;  1EZV E;  1RFS A;  5HL4 A;  3VCA A;  2DE5 D;  1SQV E;  3H1L E;  3VMI D;  3VCP A;  2BMQ A;  3GL0 A;  4HM1 A;  4NBC D;  1O7M A;  4NBD D;  4P1B H;  2XSH A;  4AIV A;  4OGQ D;  1Z02 A;  2DE5 A;  3VMH A;  1NTZ E;  4NBE D;  3AZC A;  5CXM A;  5AEW A;  2ZT9 D;  2CKF A;  2B24 A;  2NUK A;  3GL2 A;  5KLI C;  2FYU E;  1UUW A;  4NB9 A;  4NBG D;  4NBF A;  1WQL A;  3CX5 E;  4HM0 A;  3VMG D;  3L75 E;  1JM1 A;  2QJY C;  4NBB A;  2ZYL A;  3GZY A;  1O7G A;  5KLV E;  2GBX A;  4NB8 D;  2YFJ A;  4QDD A;  1O7H A;  4EMJ B;  2HMN A;  2E75 D;  1Z03 A;  4HM3 A;  4HM4 A;  3VMG A;  2I7F A;  1UUV A;  2JO6 A;  4NB8 A;  3N0Q A;  1NDO A;  3VMI A;  4HM6 A;  1WW9 A;  3H1J E;  4NBH D;  4NBC A;  2HMM A;  4NBD A;  2XR8 A;  2YVJ B;  5AEU A;  1ULI A;  2BMO A;  1NTK E;  2E76 D;  3FOU A;  1KYO E;  1BCC E;  2DE6 D;  4QDF B;  2BMR A;  2NVE A;  1FQT A;  4QUQ A;  4NBH A;  3L70 E;  2E4P A;  4NBE A;  3GB4 A;  3D89 A;  5BOK A;  2E74 D;  1L0N E;  1ZRT E;  2DE7 D;  1P84 E;  1SQQ E;  1VF5 D;  3L74 E;  1SJG A;  1RIE A;  3EN1 A;  2HML A;  2DE6 A;  4HM7 A;  5KKZ C;  2JZA A;  2HMJ A;  4H44 D;  2XRX A;  2YIU C;  4NBG A;  2FYN C;  2A06 E;  3DQY A;  2BCC E;  4HM5 A;  3GKQ A;  4QDC A;  1Z01 A;  2Q3W A;  3L73 E;  2QJK C;  4NBA D;  3EQQ A;  3GKE A;  3L72 E;  1SQB E;  3GZX A;  3L71 E;  2NUM A;  1O7N A;  3TGU E;  3GOB A;  4PD4 E;  4H0L D;  3GCE A;  2GBW A;  3H1I E;  1O7P A;  3CWB E;  1O7W A;  3BCC E;  4QCK A;  1BE3 E;  1SQP E;  4QUP A;  1G8K B;  2NWF A;  4AAY B;  1NYK A;  3VMH D;  4QDF A;  2HMK A;  4P1C H; 
#chains in the Genus database with same CATH homology
 3GTS A;  1Q90 C;  4HM2 A;  1PP9 E;  1EG9 A;  4H13 D;  1KB9 E;  2QPZ A;  1NTM E;  2B1X A;  2YFI A;  2DE7 A;  3GCF A;  1L0L E;  1ULJ A;  2NVF A;  3GTE A;  2YFL A;  4NB9 D;  4HKV A;  4NBF D;  2XSO A;  2D2C D;  1NU1 E;  4QUR A;  4HJL A;  4NBB D;  1PPJ E;  2QJP C;  2NVG A;  4HM8 A;  1VCK A;  4U3F E;  1SQX E;  3CXH E;  4NBA A;  3H1K E;  3H1H E;  2HMO A;  1VM9 A;  2IBZ E;  1G8J B;  2E4Q A;  3C0D A;  4PV1 D;  1EZV E;  1RFS A;  5HL4 A;  3VCA A;  2DE5 D;  1SQV E;  3H1L E;  3VMI D;  3VCP A;  2BMQ A;  3GL0 A;  4HM1 A;  4NBC D;  1O7M A;  4NBD D;  4P1B H;  2XSH A;  4AIV A;  4OGQ D;  1Z02 A;  2DE5 A;  3VMH A;  1NTZ E;  4NBE D;  3AZC A;  5CXM A;  5AEW A;  2ZT9 D;  2CKF A;  2B24 A;  2NUK A;  3GL2 A;  5KLI C;  2FYU E;  1UUW A;  4NB9 A;  4NBG D;  4NBF A;  1WQL A;  3CX5 E;  4HM0 A;  3VMG D;  3L75 E;  1JM1 A;  2QJY C;  4NBB A;  2ZYL A;  3GZY A;  1O7G A;  5KLV E;  2GBX A;  4NB8 D;  2YFJ A;  4QDD A;  1O7H A;  4EMJ B;  2HMN A;  2E75 D;  1Z03 A;  4HM3 A;  4HM4 A;  3VMG A;  2I7F A;  1UUV A;  2JO6 A;  4NB8 A;  3N0Q A;  1NDO A;  3VMI A;  4HM6 A;  1WW9 A;  3H1J E;  4NBH D;  4NBC A;  2HMM A;  4NBD A;  2XR8 A;  2YVJ B;  5AEU A;  1ULI A;  2BMO A;  1NTK E;  2E76 D;  3FOU A;  1KYO E;  1BCC E;  2DE6 D;  4QDF B;  2BMR A;  2NVE A;  1FQT A;  4QUQ A;  4NBH A;  3L70 E;  2E4P A;  4NBE A;  3GB4 A;  3D89 A;  5BOK A;  2E74 D;  1L0N E;  1ZRT E;  2DE7 D;  1P84 E;  1SQQ E;  1VF5 D;  3L74 E;  1SJG A;  1RIE A;  3EN1 A;  2HML A;  2DE6 A;  4HM7 A;  5KKZ C;  2JZA A;  2HMJ A;  4H44 D;  2XRX A;  2YIU C;  4NBG A;  2FYN C;  2A06 E;  3DQY A;  2BCC E;  4HM5 A;  3GKQ A;  4QDC A;  1Z01 A;  2Q3W A;  3L73 E;  2QJK C;  4NBA D;  3EQQ A;  3GKE A;  3L72 E;  1SQB E;  3GZX A;  3L71 E;  2NUM A;  1O7N A;  3TGU E;  3GOB A;  4PD4 E;  4H0L D;  3GCE A;  2GBW A;  3H1I E;  1O7P A;  3CWB E;  1O7W A;  3BCC E;  4QCK A;  1BE3 E;  1SQP E;  4QUP A;  1G8K B;  2NWF A;  4AAY B;  1NYK A;  3VMH D;  4QDF A;  2HMK A;  4P1C H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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