1O7WA

Naphthalene 1,2-dioxygenase, fully reduced form
Total Genus 162
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
publication title Crystal Structure of Naphthalene Dioxygenase: Side-on Binding of Dioxygen to Iron
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Oxidoreductase
total genus 162
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2002-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1o7wA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1o7wA01
5HL4A 1FQTA 1O7WA 3L71E 5KLIC 2Q3WA 2DE7A 4EMJB 4NBGD 1EZVE 3L74E 3H1HE 1Q90C 4HM0A 3EN1A 3H1IE 5AEWA 2HMJA 1PP9E 1EG9A 2DE5D 2GBXA 2XR8A 3CX5E 2E4QA 4HM4A 3GTSA 3GKQA 1Z03A 4H0LD 3EQQA 4HKVA 4QUPA 5AEUA 4NBCA 1NDOA 1ZRTE 2JO6A 1UUVA 4HM7A 5CXMA 2HMOA 2E75D 4NB9A 3CWBE 4NBHD 4NBAA 3VMHD 3VMID 2A06E 4NB8D 2NUMA 1WQLA 1Z02A 2YFIA 4QDFA 3L75E 4OGQD 1O7MA 1SQVE 3GKEA 4U3FE 3GL0A 3GZXA 4QCKA 1NTKE 2DE6A 4NBGA 1ULJA 2BMOA 4PV1D 1RFSA 2NUKA 2QJYC 2XSHA 4P1CH 4QDCA 5KLVE 1UUWA 3BCCE 2CKFA 4HJLA 4HM3A 2NVEA 3GOBA 4NBDD 2QJKC 3L72E 1NTZE 2YFJA 3VCAA 4QDDA 4HM5A 1KB9E 2XRXA 1JM1A 1BE3E 2HMNA 1O7GA 1NU1E 3L73E 3VCPA 3H1LE 3VMGD 1O7NA 4H44D 4NBHA 1O7PA 3CXHE 4NBEA 3VMHA 3C0DA 3VMIA 1NYKA 3H1JE 2YIUC 4NBFD 4NB8A 2QPZA 4HM6A 1L0NE 2E4PA 3GL2A 4P1BH 3L70E 1VCKA 2I7FA 2QJPC 3GCEA 5KKZC 2HMKA 3GTEA 3GB4A 1O7HA 2BCCE 1Z01A 2B24A 2B1XA 1VF5D 4NB9D 3N0QA 4NBBD 2DE5A 2E76D 1BCCE 2FYUE 1NTME 2FYNC 4NBDA 4QURA 1ULIA 4HM8A 3GCFA 2HMMA 3DQYA 1KYOE 3FOUA 2DE7D 1SQXE 2BMRA 2D2CD 2NVFA 2YVJB 2DE6D 1SQPE 4HM1A 5BOKA 1PPJE 3AZCA 4AIVA 2HMLA 2JZAA 4QDFB 3VMGA 2XSOA 1SQQE 2E74D 3D89A 4AAYB 1RIEA 2GBWA 2NVGA 2YFLA 4QUQA 4NBFA 1WW9A 1VM9A 1L0LE 1G8JB 1P84E 4NBCD 1SJGA 1SQBE 2ZYLA 3GZYA 2BMQA 4H13D 2IBZE 4HM2A 4NBAD 3TGUE 2NWFA 3H1KE 4NBBA 4PD4E 2ZT9D 4NBED 1G8KB
chains in the Genus database with same CATH superfamily
5HL4A 1FQTA 1O7WA 3L71E 5KLIC 2Q3WA 2DE7A 4EMJB 4NBGD 1EZVE 3L74E 3H1HE 1Q90C 4HM0A 3EN1A 3H1IE 5AEWA 2HMJA 1PP9E 1EG9A 2DE5D 2GBXA 2XR8A 3CX5E 2E4QA 4HM4A 3GTSA 3GKQA 1Z03A 4H0LD 3EQQA 4HKVA 4QUPA 5AEUA 4NBCA 1NDOA 1ZRTE 2JO6A 1UUVA 4HM7A 5CXMA 2HMOA 2E75D 4NB9A 3CWBE 4NBHD 4NBAA 3VMHD 3VMID 2A06E 4NB8D 2NUMA 1WQLA 1Z02A 2YFIA 4QDFA 3L75E 4OGQD 1O7MA 1SQVE 3GKEA 4U3FE 3GL0A 3GZXA 4QCKA 1NTKE 2DE6A 4NBGA 1ULJA 2BMOA 4PV1D 1RFSA 2NUKA 2QJYC 2XSHA 4P1CH 4QDCA 5KLVE 1UUWA 3BCCE 2CKFA 4HJLA 4HM3A 2NVEA 3GOBA 4NBDD 2QJKC 3L72E 1NTZE 2YFJA 3VCAA 4QDDA 4HM5A 1KB9E 2XRXA 1JM1A 1BE3E 2HMNA 1O7GA 1NU1E 3L73E 3VCPA 3H1LE 3VMGD 1O7NA 4H44D 4NBHA 1O7PA 3CXHE 4NBEA 3VMHA 3C0DA 3VMIA 1NYKA 3H1JE 2YIUC 4NBFD 4NB8A 2QPZA 4HM6A 1L0NE 2E4PA 3GL2A 4P1BH 3L70E 1VCKA 2I7FA 2QJPC 3GCEA 5KKZC 2HMKA 3GTEA 3GB4A 1O7HA 2BCCE 1Z01A 2B24A 2B1XA 1VF5D 4NB9D 3N0QA 4NBBD 2DE5A 2E76D 1BCCE 2FYUE 1NTME 2FYNC 4NBDA 4QURA 1ULIA 4HM8A 3GCFA 2HMMA 3DQYA 1KYOE 3FOUA 2DE7D 1SQXE 2BMRA 2D2CD 2NVFA 2YVJB 2DE6D 1SQPE 4HM1A 5BOKA 1PPJE 3AZCA 4AIVA 2HMLA 2JZAA 4QDFB 3VMGA 2XSOA 1SQQE 2E74D 3D89A 4AAYB 1RIEA 2GBWA 2NVGA 2YFLA 4QUQA 4NBFA 1WW9A 1VM9A 1L0LE 1G8JB 1P84E 4NBCD 1SJGA 1SQBE 2ZYLA 3GZYA 2BMQA 4H13D 2IBZE 4HM2A 4NBAD 3TGUE 2NWFA 3H1KE 4NBBA 4PD4E 2ZT9D 4NBED 1G8KB
chains in the Genus database with same CATH topology
5HL4A 1FQTA 1O7WA 3L71E 5KLIC 2Q3WA 2DE7A 4EMJB 4NBGD 1EZVE 3L74E 3H1HE 1Q90C 4HM0A 3EN1A 3H1IE 5AEWA 2HMJA 1PP9E 1EG9A 2DE5D 2GBXA 2XR8A 3CX5E 2E4QA 4HM4A 3GTSA 3GKQA 1Z03A 4H0LD 3EQQA 4HKVA 4QUPA 5AEUA 4NBCA 1NDOA 1ZRTE 2JO6A 1UUVA 4HM7A 5CXMA 2HMOA 2E75D 4NB9A 3CWBE 4NBHD 4NBAA 3VMHD 3VMID 2A06E 4NB8D 2NUMA 1WQLA 1Z02A 2YFIA 4QDFA 3L75E 4OGQD 1O7MA 1SQVE 3GKEA 4U3FE 3GL0A 3GZXA 4QCKA 1NTKE 2DE6A 4NBGA 1ULJA 2BMOA 4PV1D 1RFSA 2NUKA 2QJYC 2XSHA 4P1CH 4QDCA 5KLVE 1UUWA 3BCCE 2CKFA 4HJLA 4HM3A 2NVEA 3GOBA 4NBDD 2QJKC 3L72E 1NTZE 2YFJA 3VCAA 4QDDA 4HM5A 1KB9E 2XRXA 1JM1A 1BE3E 2HMNA 1O7GA 1NU1E 3L73E 3VCPA 3H1LE 3VMGD 1O7NA 4H44D 4NBHA 1O7PA 3CXHE 4NBEA 3VMHA 3C0DA 3VMIA 1NYKA 3H1JE 2YIUC 4NBFD 4NB8A 2QPZA 4HM6A 1L0NE 2E4PA 3GL2A 4P1BH 3L70E 1VCKA 2I7FA 2QJPC 3GCEA 5KKZC 2HMKA 3GTEA 3GB4A 1O7HA 2BCCE 1Z01A 2B24A 2B1XA 1VF5D 4NB9D 3N0QA 4NBBD 2DE5A 2E76D 1BCCE 2FYUE 1NTME 2FYNC 4NBDA 4QURA 1ULIA 4HM8A 3GCFA 2HMMA 3DQYA 1KYOE 3FOUA 2DE7D 1SQXE 2BMRA 2D2CD 2NVFA 2YVJB 2DE6D 1SQPE 4HM1A 5BOKA 1PPJE 3AZCA 4AIVA 2HMLA 2JZAA 4QDFB 3VMGA 2XSOA 1SQQE 2E74D 3D89A 4AAYB 1RIEA 2GBWA 2NVGA 2YFLA 4QUQA 4NBFA 1WW9A 1VM9A 1L0LE 1G8JB 1P84E 4NBCD 1SJGA 1SQBE 2ZYLA 3GZYA 2BMQA 4H13D 2IBZE 4HM2A 4NBAD 3TGUE 2NWFA 3H1KE 4NBBA 4PD4E 2ZT9D 4NBED 1G8KB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HL4 A;  1FQT A;  1O7W A;  3L71 E;  5KLI C;  2Q3W A;  2DE7 A;  4EMJ B;  4NBG D;  1EZV E;  3L74 E;  3H1H E;  1Q90 C;  4HM0 A;  3EN1 A;  3H1I E;  5AEW A;  2HMJ A;  1PP9 E;  1EG9 A;  2DE5 D;  2GBX A;  2XR8 A;  3CX5 E;  2E4Q A;  4HM4 A;  3GTS A;  3GKQ A;  1Z03 A;  4H0L D;  3EQQ A;  4HKV A;  4QUP A;  5AEU A;  4NBC A;  1NDO A;  1ZRT E;  2JO6 A;  1UUV A;  4HM7 A;  5CXM A;  2HMO A;  2E75 D;  4NB9 A;  3CWB E;  4NBH D;  4NBA A;  3VMH D;  3VMI D;  2A06 E;  4NB8 D;  2NUM A;  1WQL A;  1Z02 A;  2YFI A;  4QDF A;  3L75 E;  4OGQ D;  1O7M A;  1SQV E;  3GKE A;  4U3F E;  3GL0 A;  3GZX A;  4QCK A;  1NTK E;  2DE6 A;  4NBG A;  1ULJ A;  2BMO A;  4PV1 D;  1RFS A;  2NUK A;  2QJY C;  2XSH A;  4P1C H;  4QDC A;  5KLV E;  1UUW A;  3BCC E;  2CKF A;  4HJL A;  4HM3 A;  2NVE A;  3GOB A;  4NBD D;  2QJK C;  3L72 E;  1NTZ E;  2YFJ A;  3VCA A;  4QDD A;  4HM5 A;  1KB9 E;  2XRX A;  1JM1 A;  1BE3 E;  2HMN A;  1O7G A;  1NU1 E;  3L73 E;  3VCP A;  3H1L E;  3VMG D;  1O7N A;  4H44 D;  4NBH A;  1O7P A;  3CXH E;  4NBE A;  3VMH A;  3C0D A;  3VMI A;  1NYK A;  3H1J E;  2YIU C;  4NBF D;  4NB8 A;  2QPZ A;  4HM6 A;  1L0N E;  2E4P A;  3GL2 A;  4P1B H;  3L70 E;  1VCK A;  2I7F A;  2QJP C;  3GCE A;  5KKZ C;  2HMK A;  3GTE A;  3GB4 A;  1O7H A;  2BCC E;  1Z01 A;  2B24 A;  2B1X A;  1VF5 D;  4NB9 D;  3N0Q A;  4NBB D;  2DE5 A;  2E76 D;  1BCC E;  2FYU E;  1NTM E;  2FYN C;  4NBD A;  4QUR A;  1ULI A;  4HM8 A;  3GCF A;  2HMM A;  3DQY A;  1KYO E;  3FOU A;  2DE7 D;  1SQX E;  2BMR A;  2D2C D;  2NVF A;  2YVJ B;  2DE6 D;  1SQP E;  4HM1 A;  5BOK A;  1PPJ E;  3AZC A;  4AIV A;  2HML A;  2JZA A;  4QDF B;  3VMG A;  2XSO A;  1SQQ E;  2E74 D;  3D89 A;  4AAY B;  1RIE A;  2GBW A;  2NVG A;  2YFL A;  4QUQ A;  4NBF A;  1WW9 A;  1VM9 A;  1L0L E;  1G8J B;  1P84 E;  4NBC D;  1SJG A;  1SQB E;  2ZYL A;  3GZY A;  2BMQ A;  4H13 D;  2IBZ E;  4HM2 A;  4NBA D;  3TGU E;  2NWF A;  3H1K E;  4NBB A;  4PD4 E;  2ZT9 D;  4NBE D;  1G8K B; 
#chains in the Genus database with same CATH topology
 5HL4 A;  1FQT A;  1O7W A;  3L71 E;  5KLI C;  2Q3W A;  2DE7 A;  4EMJ B;  4NBG D;  1EZV E;  3L74 E;  3H1H E;  1Q90 C;  4HM0 A;  3EN1 A;  3H1I E;  5AEW A;  2HMJ A;  1PP9 E;  1EG9 A;  2DE5 D;  2GBX A;  2XR8 A;  3CX5 E;  2E4Q A;  4HM4 A;  3GTS A;  3GKQ A;  1Z03 A;  4H0L D;  3EQQ A;  4HKV A;  4QUP A;  5AEU A;  4NBC A;  1NDO A;  1ZRT E;  2JO6 A;  1UUV A;  4HM7 A;  5CXM A;  2HMO A;  2E75 D;  4NB9 A;  3CWB E;  4NBH D;  4NBA A;  3VMH D;  3VMI D;  2A06 E;  4NB8 D;  2NUM A;  1WQL A;  1Z02 A;  2YFI A;  4QDF A;  3L75 E;  4OGQ D;  1O7M A;  1SQV E;  3GKE A;  4U3F E;  3GL0 A;  3GZX A;  4QCK A;  1NTK E;  2DE6 A;  4NBG A;  1ULJ A;  2BMO A;  4PV1 D;  1RFS A;  2NUK A;  2QJY C;  2XSH A;  4P1C H;  4QDC A;  5KLV E;  1UUW A;  3BCC E;  2CKF A;  4HJL A;  4HM3 A;  2NVE A;  3GOB A;  4NBD D;  2QJK C;  3L72 E;  1NTZ E;  2YFJ A;  3VCA A;  4QDD A;  4HM5 A;  1KB9 E;  2XRX A;  1JM1 A;  1BE3 E;  2HMN A;  1O7G A;  1NU1 E;  3L73 E;  3VCP A;  3H1L E;  3VMG D;  1O7N A;  4H44 D;  4NBH A;  1O7P A;  3CXH E;  4NBE A;  3VMH A;  3C0D A;  3VMI A;  1NYK A;  3H1J E;  2YIU C;  4NBF D;  4NB8 A;  2QPZ A;  4HM6 A;  1L0N E;  2E4P A;  3GL2 A;  4P1B H;  3L70 E;  1VCK A;  2I7F A;  2QJP C;  3GCE A;  5KKZ C;  2HMK A;  3GTE A;  3GB4 A;  1O7H A;  2BCC E;  1Z01 A;  2B24 A;  2B1X A;  1VF5 D;  4NB9 D;  3N0Q A;  4NBB D;  2DE5 A;  2E76 D;  1BCC E;  2FYU E;  1NTM E;  2FYN C;  4NBD A;  4QUR A;  1ULI A;  4HM8 A;  3GCF A;  2HMM A;  3DQY A;  1KYO E;  3FOU A;  2DE7 D;  1SQX E;  2BMR A;  2D2C D;  2NVF A;  2YVJ B;  2DE6 D;  1SQP E;  4HM1 A;  5BOK A;  1PPJ E;  3AZC A;  4AIV A;  2HML A;  2JZA A;  4QDF B;  3VMG A;  2XSO A;  1SQQ E;  2E74 D;  3D89 A;  4AAY B;  1RIE A;  2GBW A;  2NVG A;  2YFL A;  4QUQ A;  4NBF A;  1WW9 A;  1VM9 A;  1L0L E;  1G8J B;  1P84 E;  4NBC D;  1SJG A;  1SQB E;  2ZYL A;  3GZY A;  2BMQ A;  4H13 D;  2IBZ E;  4HM2 A;  4NBA D;  3TGU E;  2NWF A;  3H1K E;  4NBB A;  4PD4 E;  2ZT9 D;  4NBE D;  1G8K B; 
#chains in the Genus database with same CATH homology
 5HL4 A;  1FQT A;  1O7W A;  3L71 E;  5KLI C;  2Q3W A;  2DE7 A;  4EMJ B;  4NBG D;  1EZV E;  3L74 E;  3H1H E;  1Q90 C;  4HM0 A;  3EN1 A;  3H1I E;  5AEW A;  2HMJ A;  1PP9 E;  1EG9 A;  2DE5 D;  2GBX A;  2XR8 A;  3CX5 E;  2E4Q A;  4HM4 A;  3GTS A;  3GKQ A;  1Z03 A;  4H0L D;  3EQQ A;  4HKV A;  4QUP A;  5AEU A;  4NBC A;  1NDO A;  1ZRT E;  2JO6 A;  1UUV A;  4HM7 A;  5CXM A;  2HMO A;  2E75 D;  4NB9 A;  3CWB E;  4NBH D;  4NBA A;  3VMH D;  3VMI D;  2A06 E;  4NB8 D;  2NUM A;  1WQL A;  1Z02 A;  2YFI A;  4QDF A;  3L75 E;  4OGQ D;  1O7M A;  1SQV E;  3GKE A;  4U3F E;  3GL0 A;  3GZX A;  4QCK A;  1NTK E;  2DE6 A;  4NBG A;  1ULJ A;  2BMO A;  4PV1 D;  1RFS A;  2NUK A;  2QJY C;  2XSH A;  4P1C H;  4QDC A;  5KLV E;  1UUW A;  3BCC E;  2CKF A;  4HJL A;  4HM3 A;  2NVE A;  3GOB A;  4NBD D;  2QJK C;  3L72 E;  1NTZ E;  2YFJ A;  3VCA A;  4QDD A;  4HM5 A;  1KB9 E;  2XRX A;  1JM1 A;  1BE3 E;  2HMN A;  1O7G A;  1NU1 E;  3L73 E;  3VCP A;  3H1L E;  3VMG D;  1O7N A;  4H44 D;  4NBH A;  1O7P A;  3CXH E;  4NBE A;  3VMH A;  3C0D A;  3VMI A;  1NYK A;  3H1J E;  2YIU C;  4NBF D;  4NB8 A;  2QPZ A;  4HM6 A;  1L0N E;  2E4P A;  3GL2 A;  4P1B H;  3L70 E;  1VCK A;  2I7F A;  2QJP C;  3GCE A;  5KKZ C;  2HMK A;  3GTE A;  3GB4 A;  1O7H A;  2BCC E;  1Z01 A;  2B24 A;  2B1X A;  1VF5 D;  4NB9 D;  3N0Q A;  4NBB D;  2DE5 A;  2E76 D;  1BCC E;  2FYU E;  1NTM E;  2FYN C;  4NBD A;  4QUR A;  1ULI A;  4HM8 A;  3GCF A;  2HMM A;  3DQY A;  1KYO E;  3FOU A;  2DE7 D;  1SQX E;  2BMR A;  2D2C D;  2NVF A;  2YVJ B;  2DE6 D;  1SQP E;  4HM1 A;  5BOK A;  1PPJ E;  3AZC A;  4AIV A;  2HML A;  2JZA A;  4QDF B;  3VMG A;  2XSO A;  1SQQ E;  2E74 D;  3D89 A;  4AAY B;  1RIE A;  2GBW A;  2NVG A;  2YFL A;  4QUQ A;  4NBF A;  1WW9 A;  1VM9 A;  1L0L E;  1G8J B;  1P84 E;  4NBC D;  1SJG A;  1SQB E;  2ZYL A;  3GZY A;  2BMQ A;  4H13 D;  2IBZ E;  4HM2 A;  4NBA D;  3TGU E;  2NWF A;  3H1K E;  4NBB A;  4PD4 E;  2ZT9 D;  4NBE D;  1G8K B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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