4QUPA

Crystal structure of stachydrine demethylase with n-methyl proline from low x-ray dose composite datasets
Total Genus 130
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
415
structure length
414
Chain Sequence
GTENLYFQSMMTANPTSIHQRLDRRLSGFSLEQPFYTSPEVYALDLQHIFYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAFHNSCRHRGSLICKARQGQVAKLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNLDGLIYICLSDTPPDFQTFAQLARPYLEVHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPDPEVAGVQADGGVSKKLQAHFDRCEAAGTPAQFVLAGDGQYRLARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHFLPDHSLTFRVMPISPTETEVTTTWLVHKDAVEGVDYDLKRLTEVWIATNDEDREIVETNQQGILSPAYVPGPYSPGQESGVMQFVDWYAASLERALA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Monoxygenase; demethylase
publication title Tracking photoelectron induced in-crystallo enzyme catalysis
rcsb
source organism Sinorhizobium meliloti 1021
total genus 130
structure length 414
sequence length 415
ec nomenclature ec 1.-.-.-:
pdb deposition date 2014-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4qupA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4qupA01
1BCCE 2HMOA 3H1IE 4NBBD 2NWFA 3VMID 2HMJA 2E4PA 2NUMA 4HM6A 4QDFA 4NBED 1SQPE 4P1CH 3CX5E 3L71E 4HJLA 1O7NA 2FYUE 4NBCA 3VMHD 4NBFA 3GL2A 3GZXA 1L0NE 4NB9D 3GCEA 2NVGA 2YFIA 3H1HE 3VCAA 1ZRTE 3GTSA 4QDDA 4H0LD 3GOBA 4H13D 1ULJA 1FQTA 1WW9A 4NBAD 1O7GA 4AIVA 1SJGA 1WQLA 2HMMA 4QDFB 1NTME 4PV1D 2DE7D 3C0DA 3GKEA 1O7PA 3CXHE 3VMGD 4P1BH 4NB8A 2BMQA 1G8JB 2CKFA 4NBDA 3L73E 4EMJB 2ZT9D 5AEUA 2Q3WA 2XRXA 1SQXE 4QCKA 1SQVE 1PPJE 2XSOA 2YFJA 2IBZE 4QUPA 1PP9E 2NUKA 2JO6A 2QJPC 3D89A 2YFLA 2E74D 2BMOA 2XR8A 1L0LE 4NBCD 1G8KB 2ZYLA 2B24A 3L72E 4NBFD 1SQQE 1Z03A 2NVFA 2YIUC 2DE6A 1O7WA 1UUVA 2E75D 5KKZC 1KYOE 4NBGA 4QUQA 2A06E 1NDOA 5KLVE 1UUWA 3GKQA 3GCFA 4AAYB 3AZCA 4HM8A 1SQBE 2B1XA 2BCCE 5BOKA 3L75E 5AEWA 1VM9A 2BMRA 3FOUA 4NB8D 2QJKC 1RFSA 4NBDD 3CWBE 3GL0A 3BCCE 1KB9E 2DE5A 4U3FE 2E76D 3EN1A 5CXMA 1BE3E 3EQQA 5HL4A 4NBHA 1Q90C 1ULIA 2HMLA 4NBBA 3TGUE 3VMIA 4PD4E 3DQYA 2HMKA 3L74E 4NBEA 2FYNC 2QJYC 1NU1E 4HM4A 3H1KE 4HM1A 4QURA 1VF5D 1Z02A 2JZAA 2HMNA 2NVEA 2DE6D 1NTZE 3VMHA 1EG9A 1O7MA 3L70E 4H44D 3GB4A 4QDCA 4HKVA 4NBGD 4NB9A 4HM0A 3GZYA 3N0QA 3GTEA 2GBXA 4HM2A 2I7FA 4NBAA 4HM3A 5KLIC 1O7HA 1EZVE 3H1LE 1P84E 1Z01A 1JM1A 3H1JE 4HM7A 2DE7A 1VCKA 3VCPA 1RIEA 3VMGA 2DE5D 4HM5A 2E4QA 2QPZA 4OGQD 2D2CD 2YVJB 1NTKE 1NYKA 2GBWA 4NBHD 2XSHA
chains in the Genus database with same CATH superfamily
1BCCE 2HMOA 3H1IE 4NBBD 2NWFA 3VMID 2HMJA 2E4PA 2NUMA 4HM6A 4QDFA 4NBED 1SQPE 4P1CH 3CX5E 3L71E 4HJLA 1O7NA 2FYUE 4NBCA 3VMHD 4NBFA 3GL2A 3GZXA 1L0NE 4NB9D 3GCEA 2NVGA 2YFIA 3H1HE 3VCAA 1ZRTE 3GTSA 4QDDA 4H0LD 3GOBA 4H13D 1ULJA 1FQTA 1WW9A 4NBAD 1O7GA 4AIVA 1SJGA 1WQLA 2HMMA 4QDFB 1NTME 4PV1D 2DE7D 3C0DA 3GKEA 1O7PA 3CXHE 3VMGD 4P1BH 4NB8A 2BMQA 1G8JB 2CKFA 4NBDA 3L73E 4EMJB 2ZT9D 5AEUA 2Q3WA 2XRXA 1SQXE 4QCKA 1SQVE 1PPJE 2XSOA 2YFJA 2IBZE 4QUPA 1PP9E 2NUKA 2JO6A 2QJPC 3D89A 2YFLA 2E74D 2BMOA 2XR8A 1L0LE 4NBCD 1G8KB 2ZYLA 2B24A 3L72E 4NBFD 1SQQE 1Z03A 2NVFA 2YIUC 2DE6A 1O7WA 1UUVA 2E75D 5KKZC 1KYOE 4NBGA 4QUQA 2A06E 1NDOA 5KLVE 1UUWA 3GKQA 3GCFA 4AAYB 3AZCA 4HM8A 1SQBE 2B1XA 2BCCE 5BOKA 3L75E 5AEWA 1VM9A 2BMRA 3FOUA 4NB8D 2QJKC 1RFSA 4NBDD 3CWBE 3GL0A 3BCCE 1KB9E 2DE5A 4U3FE 2E76D 3EN1A 5CXMA 1BE3E 3EQQA 5HL4A 4NBHA 1Q90C 1ULIA 2HMLA 4NBBA 3TGUE 3VMIA 4PD4E 3DQYA 2HMKA 3L74E 4NBEA 2FYNC 2QJYC 1NU1E 4HM4A 3H1KE 4HM1A 4QURA 1VF5D 1Z02A 2JZAA 2HMNA 2NVEA 2DE6D 1NTZE 3VMHA 1EG9A 1O7MA 3L70E 4H44D 3GB4A 4QDCA 4HKVA 4NBGD 4NB9A 4HM0A 3GZYA 3N0QA 3GTEA 2GBXA 4HM2A 2I7FA 4NBAA 4HM3A 5KLIC 1O7HA 1EZVE 3H1LE 1P84E 1Z01A 1JM1A 3H1JE 4HM7A 2DE7A 1VCKA 3VCPA 1RIEA 3VMGA 2DE5D 4HM5A 2E4QA 2QPZA 4OGQD 2D2CD 2YVJB 1NTKE 1NYKA 2GBWA 4NBHD 2XSHA
chains in the Genus database with same CATH topology
1BCCE 2HMOA 3H1IE 4NBBD 2NWFA 3VMID 2HMJA 2E4PA 2NUMA 4HM6A 4QDFA 4NBED 1SQPE 4P1CH 3CX5E 3L71E 4HJLA 1O7NA 2FYUE 4NBCA 3VMHD 4NBFA 3GL2A 3GZXA 1L0NE 4NB9D 3GCEA 2NVGA 2YFIA 3H1HE 3VCAA 1ZRTE 3GTSA 4QDDA 4H0LD 3GOBA 4H13D 1ULJA 1FQTA 1WW9A 4NBAD 1O7GA 4AIVA 1SJGA 1WQLA 2HMMA 4QDFB 1NTME 4PV1D 2DE7D 3C0DA 3GKEA 1O7PA 3CXHE 3VMGD 4P1BH 4NB8A 2BMQA 1G8JB 2CKFA 4NBDA 3L73E 4EMJB 2ZT9D 5AEUA 2Q3WA 2XRXA 1SQXE 4QCKA 1SQVE 1PPJE 2XSOA 2YFJA 2IBZE 4QUPA 1PP9E 2NUKA 2JO6A 2QJPC 3D89A 2YFLA 2E74D 2BMOA 2XR8A 1L0LE 4NBCD 1G8KB 2ZYLA 2B24A 3L72E 4NBFD 1SQQE 1Z03A 2NVFA 2YIUC 2DE6A 1O7WA 1UUVA 2E75D 5KKZC 1KYOE 4NBGA 4QUQA 2A06E 1NDOA 5KLVE 1UUWA 3GKQA 3GCFA 4AAYB 3AZCA 4HM8A 1SQBE 2B1XA 2BCCE 5BOKA 3L75E 5AEWA 1VM9A 2BMRA 3FOUA 4NB8D 2QJKC 1RFSA 4NBDD 3CWBE 3GL0A 3BCCE 1KB9E 2DE5A 4U3FE 2E76D 3EN1A 5CXMA 1BE3E 3EQQA 5HL4A 4NBHA 1Q90C 1ULIA 2HMLA 4NBBA 3TGUE 3VMIA 4PD4E 3DQYA 2HMKA 3L74E 4NBEA 2FYNC 2QJYC 1NU1E 4HM4A 3H1KE 4HM1A 4QURA 1VF5D 1Z02A 2JZAA 2HMNA 2NVEA 2DE6D 1NTZE 3VMHA 1EG9A 1O7MA 3L70E 4H44D 3GB4A 4QDCA 4HKVA 4NBGD 4NB9A 4HM0A 3GZYA 3N0QA 3GTEA 2GBXA 4HM2A 2I7FA 4NBAA 4HM3A 5KLIC 1O7HA 1EZVE 3H1LE 1P84E 1Z01A 1JM1A 3H1JE 4HM7A 2DE7A 1VCKA 3VCPA 1RIEA 3VMGA 2DE5D 4HM5A 2E4QA 2QPZA 4OGQD 2D2CD 2YVJB 1NTKE 1NYKA 2GBWA 4NBHD 2XSHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BCC E;  2HMO A;  3H1I E;  4NBB D;  2NWF A;  3VMI D;  2HMJ A;  2E4P A;  2NUM A;  4HM6 A;  4QDF A;  4NBE D;  1SQP E;  4P1C H;  3CX5 E;  3L71 E;  4HJL A;  1O7N A;  2FYU E;  4NBC A;  3VMH D;  4NBF A;  3GL2 A;  3GZX A;  1L0N E;  4NB9 D;  3GCE A;  2NVG A;  2YFI A;  3H1H E;  3VCA A;  1ZRT E;  3GTS A;  4QDD A;  4H0L D;  3GOB A;  4H13 D;  1ULJ A;  1FQT A;  1WW9 A;  4NBA D;  1O7G A;  4AIV A;  1SJG A;  1WQL A;  2HMM A;  4QDF B;  1NTM E;  4PV1 D;  2DE7 D;  3C0D A;  3GKE A;  1O7P A;  3CXH E;  3VMG D;  4P1B H;  4NB8 A;  2BMQ A;  1G8J B;  2CKF A;  4NBD A;  3L73 E;  4EMJ B;  2ZT9 D;  5AEU A;  2Q3W A;  2XRX A;  1SQX E;  4QCK A;  1SQV E;  1PPJ E;  2XSO A;  2YFJ A;  2IBZ E;  4QUP A;  1PP9 E;  2NUK A;  2JO6 A;  2QJP C;  3D89 A;  2YFL A;  2E74 D;  2BMO A;  2XR8 A;  1L0L E;  4NBC D;  1G8K B;  2ZYL A;  2B24 A;  3L72 E;  4NBF D;  1SQQ E;  1Z03 A;  2NVF A;  2YIU C;  2DE6 A;  1O7W A;  1UUV A;  2E75 D;  5KKZ C;  1KYO E;  4NBG A;  4QUQ A;  2A06 E;  1NDO A;  5KLV E;  1UUW A;  3GKQ A;  3GCF A;  4AAY B;  3AZC A;  4HM8 A;  1SQB E;  2B1X A;  2BCC E;  5BOK A;  3L75 E;  5AEW A;  1VM9 A;  2BMR A;  3FOU A;  4NB8 D;  2QJK C;  1RFS A;  4NBD D;  3CWB E;  3GL0 A;  3BCC E;  1KB9 E;  2DE5 A;  4U3F E;  2E76 D;  3EN1 A;  5CXM A;  1BE3 E;  3EQQ A;  5HL4 A;  4NBH A;  1Q90 C;  1ULI A;  2HML A;  4NBB A;  3TGU E;  3VMI A;  4PD4 E;  3DQY A;  2HMK A;  3L74 E;  4NBE A;  2FYN C;  2QJY C;  1NU1 E;  4HM4 A;  3H1K E;  4HM1 A;  4QUR A;  1VF5 D;  1Z02 A;  2JZA A;  2HMN A;  2NVE A;  2DE6 D;  1NTZ E;  3VMH A;  1EG9 A;  1O7M A;  3L70 E;  4H44 D;  3GB4 A;  4QDC A;  4HKV A;  4NBG D;  4NB9 A;  4HM0 A;  3GZY A;  3N0Q A;  3GTE A;  2GBX A;  4HM2 A;  2I7F A;  4NBA A;  4HM3 A;  5KLI C;  1O7H A;  1EZV E;  3H1L E;  1P84 E;  1Z01 A;  1JM1 A;  3H1J E;  4HM7 A;  2DE7 A;  1VCK A;  3VCP A;  1RIE A;  3VMG A;  2DE5 D;  4HM5 A;  2E4Q A;  2QPZ A;  4OGQ D;  2D2C D;  2YVJ B;  1NTK E;  1NYK A;  2GBW A;  4NBH D;  2XSH A; 
#chains in the Genus database with same CATH topology
 1BCC E;  2HMO A;  3H1I E;  4NBB D;  2NWF A;  3VMI D;  2HMJ A;  2E4P A;  2NUM A;  4HM6 A;  4QDF A;  4NBE D;  1SQP E;  4P1C H;  3CX5 E;  3L71 E;  4HJL A;  1O7N A;  2FYU E;  4NBC A;  3VMH D;  4NBF A;  3GL2 A;  3GZX A;  1L0N E;  4NB9 D;  3GCE A;  2NVG A;  2YFI A;  3H1H E;  3VCA A;  1ZRT E;  3GTS A;  4QDD A;  4H0L D;  3GOB A;  4H13 D;  1ULJ A;  1FQT A;  1WW9 A;  4NBA D;  1O7G A;  4AIV A;  1SJG A;  1WQL A;  2HMM A;  4QDF B;  1NTM E;  4PV1 D;  2DE7 D;  3C0D A;  3GKE A;  1O7P A;  3CXH E;  3VMG D;  4P1B H;  4NB8 A;  2BMQ A;  1G8J B;  2CKF A;  4NBD A;  3L73 E;  4EMJ B;  2ZT9 D;  5AEU A;  2Q3W A;  2XRX A;  1SQX E;  4QCK A;  1SQV E;  1PPJ E;  2XSO A;  2YFJ A;  2IBZ E;  4QUP A;  1PP9 E;  2NUK A;  2JO6 A;  2QJP C;  3D89 A;  2YFL A;  2E74 D;  2BMO A;  2XR8 A;  1L0L E;  4NBC D;  1G8K B;  2ZYL A;  2B24 A;  3L72 E;  4NBF D;  1SQQ E;  1Z03 A;  2NVF A;  2YIU C;  2DE6 A;  1O7W A;  1UUV A;  2E75 D;  5KKZ C;  1KYO E;  4NBG A;  4QUQ A;  2A06 E;  1NDO A;  5KLV E;  1UUW A;  3GKQ A;  3GCF A;  4AAY B;  3AZC A;  4HM8 A;  1SQB E;  2B1X A;  2BCC E;  5BOK A;  3L75 E;  5AEW A;  1VM9 A;  2BMR A;  3FOU A;  4NB8 D;  2QJK C;  1RFS A;  4NBD D;  3CWB E;  3GL0 A;  3BCC E;  1KB9 E;  2DE5 A;  4U3F E;  2E76 D;  3EN1 A;  5CXM A;  1BE3 E;  3EQQ A;  5HL4 A;  4NBH A;  1Q90 C;  1ULI A;  2HML A;  4NBB A;  3TGU E;  3VMI A;  4PD4 E;  3DQY A;  2HMK A;  3L74 E;  4NBE A;  2FYN C;  2QJY C;  1NU1 E;  4HM4 A;  3H1K E;  4HM1 A;  4QUR A;  1VF5 D;  1Z02 A;  2JZA A;  2HMN A;  2NVE A;  2DE6 D;  1NTZ E;  3VMH A;  1EG9 A;  1O7M A;  3L70 E;  4H44 D;  3GB4 A;  4QDC A;  4HKV A;  4NBG D;  4NB9 A;  4HM0 A;  3GZY A;  3N0Q A;  3GTE A;  2GBX A;  4HM2 A;  2I7F A;  4NBA A;  4HM3 A;  5KLI C;  1O7H A;  1EZV E;  3H1L E;  1P84 E;  1Z01 A;  1JM1 A;  3H1J E;  4HM7 A;  2DE7 A;  1VCK A;  3VCP A;  1RIE A;  3VMG A;  2DE5 D;  4HM5 A;  2E4Q A;  2QPZ A;  4OGQ D;  2D2C D;  2YVJ B;  1NTK E;  1NYK A;  2GBW A;  4NBH D;  2XSH A; 
#chains in the Genus database with same CATH homology
 1BCC E;  2HMO A;  3H1I E;  4NBB D;  2NWF A;  3VMI D;  2HMJ A;  2E4P A;  2NUM A;  4HM6 A;  4QDF A;  4NBE D;  1SQP E;  4P1C H;  3CX5 E;  3L71 E;  4HJL A;  1O7N A;  2FYU E;  4NBC A;  3VMH D;  4NBF A;  3GL2 A;  3GZX A;  1L0N E;  4NB9 D;  3GCE A;  2NVG A;  2YFI A;  3H1H E;  3VCA A;  1ZRT E;  3GTS A;  4QDD A;  4H0L D;  3GOB A;  4H13 D;  1ULJ A;  1FQT A;  1WW9 A;  4NBA D;  1O7G A;  4AIV A;  1SJG A;  1WQL A;  2HMM A;  4QDF B;  1NTM E;  4PV1 D;  2DE7 D;  3C0D A;  3GKE A;  1O7P A;  3CXH E;  3VMG D;  4P1B H;  4NB8 A;  2BMQ A;  1G8J B;  2CKF A;  4NBD A;  3L73 E;  4EMJ B;  2ZT9 D;  5AEU A;  2Q3W A;  2XRX A;  1SQX E;  4QCK A;  1SQV E;  1PPJ E;  2XSO A;  2YFJ A;  2IBZ E;  4QUP A;  1PP9 E;  2NUK A;  2JO6 A;  2QJP C;  3D89 A;  2YFL A;  2E74 D;  2BMO A;  2XR8 A;  1L0L E;  4NBC D;  1G8K B;  2ZYL A;  2B24 A;  3L72 E;  4NBF D;  1SQQ E;  1Z03 A;  2NVF A;  2YIU C;  2DE6 A;  1O7W A;  1UUV A;  2E75 D;  5KKZ C;  1KYO E;  4NBG A;  4QUQ A;  2A06 E;  1NDO A;  5KLV E;  1UUW A;  3GKQ A;  3GCF A;  4AAY B;  3AZC A;  4HM8 A;  1SQB E;  2B1X A;  2BCC E;  5BOK A;  3L75 E;  5AEW A;  1VM9 A;  2BMR A;  3FOU A;  4NB8 D;  2QJK C;  1RFS A;  4NBD D;  3CWB E;  3GL0 A;  3BCC E;  1KB9 E;  2DE5 A;  4U3F E;  2E76 D;  3EN1 A;  5CXM A;  1BE3 E;  3EQQ A;  5HL4 A;  4NBH A;  1Q90 C;  1ULI A;  2HML A;  4NBB A;  3TGU E;  3VMI A;  4PD4 E;  3DQY A;  2HMK A;  3L74 E;  4NBE A;  2FYN C;  2QJY C;  1NU1 E;  4HM4 A;  3H1K E;  4HM1 A;  4QUR A;  1VF5 D;  1Z02 A;  2JZA A;  2HMN A;  2NVE A;  2DE6 D;  1NTZ E;  3VMH A;  1EG9 A;  1O7M A;  3L70 E;  4H44 D;  3GB4 A;  4QDC A;  4HKV A;  4NBG D;  4NB9 A;  4HM0 A;  3GZY A;  3N0Q A;  3GTE A;  2GBX A;  4HM2 A;  2I7F A;  4NBA A;  4HM3 A;  5KLI C;  1O7H A;  1EZV E;  3H1L E;  1P84 E;  1Z01 A;  1JM1 A;  3H1J E;  4HM7 A;  2DE7 A;  1VCK A;  3VCP A;  1RIE A;  3VMG A;  2DE5 D;  4HM5 A;  2E4Q A;  2QPZ A;  4OGQ D;  2D2C D;  2YVJ B;  1NTK E;  1NYK A;  2GBW A;  4NBH D;  2XSH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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