4HM6A

Naphthalene 1,2-dioxygenase bound to phenetole
Total Genus 161
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
publication title Naphthalene 1,2-Dioxygenase bound to phenetole
rcsb
source organism Pseudomonas sp. c18
molecule tags Oxidoreductase/oxidoreductase inhibitor
total genus 161
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm6A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm6A01
3D89A 1O7PA 1UUWA 3GKEA 5CXMA 2YFIA 4NBGD 4QDCA 2I7FA 2QJKC 2BMQA 4HM7A 4NBFA 1BE3E 4HM2A 4NBHD 4AAYB 3EQQA 1EZVE 3H1IE 2DE6A 1L0LE 2B24A 2QJPC 4NBAD 3H1LE 4NBCD 4NB9D 3L71E 5KLVE 3GKQA 4HM5A 2E74D 1VF5D 2YIUC 1NTME 2NUKA 1SQPE 1L0NE 4NBED 2DE5D 3GCEA 1NDOA 1SQXE 2ZT9D 2A06E 4PV1D 2E75D 1SJGA 1PPJE 1O7GA 2YVJB 1RIEA 4HM4A 1P84E 4H13D 2HMJA 2FYNC 4NBDD 3VMHD 2QPZA 3VCAA 3N0QA 4QDFA 2HMLA 3GCFA 2E4PA 1G8JB 3VMID 4NBGA 2DE7D 1KB9E 3VMGD 2NVGA 5AEUA 1NTKE 2HMMA 2YFJA 1PP9E 2NWFA 1Q90C 3GOBA 4QUQA 1Z03A 4NBHA 4HM1A 2XSHA 1NU1E 4NB8D 3H1KE 2BMOA 2XR8A 4EMJB 2NVFA 3GB4A 4HJLA 1VM9A 1EG9A 2BMRA 3GL0A 4NBCA 4NB9A 4NBFD 2HMKA 5AEWA 4H0LD 1ULJA 4HM3A 4U3FE 4NBBA 2GBWA 1O7MA 4NBEA 4HM8A 1NTZE 2NUMA 2E76D 5HL4A 3L72E 1BCCE 4QDFB 1SQQE 3H1HE 1Z02A 3GTSA 4P1CH 2JO6A 4NBDA 3VMHA 3AZCA 1SQBE 4PD4E 1UUVA 3L74E 4OGQD 2DE7A 4P1BH 1NYKA 4QCKA 1ZRTE 2QJYC 3GL2A 1O7NA 3EN1A 4HM0A 1KYOE 3VCPA 3GZYA 2B1XA 3GTEA 3FOUA 4NBAA 3L73E 4HKVA 1WQLA 1WW9A 1Z01A 4H44D 4NB8A 3L75E 3H1JE 1O7HA 4QURA 2DE6D 4AIVA 2E4QA 2HMNA 3BCCE 1RFSA 2DE5A 1JM1A 1ULIA 4QUPA 1SQVE 2FYUE 2JZAA 2BCCE 5KKZC 3CWBE 2YFLA 5KLIC 4HM6A 2HMOA 1O7WA 3DQYA 1VCKA 3CX5E 3GZXA 2XSOA 2ZYLA 5BOKA 2GBXA 4NBBD 3TGUE 2XRXA 3C0DA 2Q3WA 4QDDA 3VMIA 2CKFA 3CXHE 2D2CD 3VMGA 2NVEA 1G8KB 1FQTA 2IBZE 3L70E
chains in the Genus database with same CATH superfamily
3D89A 1O7PA 1UUWA 3GKEA 5CXMA 2YFIA 4NBGD 4QDCA 2I7FA 2QJKC 2BMQA 4HM7A 4NBFA 1BE3E 4HM2A 4NBHD 4AAYB 3EQQA 1EZVE 3H1IE 2DE6A 1L0LE 2B24A 2QJPC 4NBAD 3H1LE 4NBCD 4NB9D 3L71E 5KLVE 3GKQA 4HM5A 2E74D 1VF5D 2YIUC 1NTME 2NUKA 1SQPE 1L0NE 4NBED 2DE5D 3GCEA 1NDOA 1SQXE 2ZT9D 2A06E 4PV1D 2E75D 1SJGA 1PPJE 1O7GA 2YVJB 1RIEA 4HM4A 1P84E 4H13D 2HMJA 2FYNC 4NBDD 3VMHD 2QPZA 3VCAA 3N0QA 4QDFA 2HMLA 3GCFA 2E4PA 1G8JB 3VMID 4NBGA 2DE7D 1KB9E 3VMGD 2NVGA 5AEUA 1NTKE 2HMMA 2YFJA 1PP9E 2NWFA 1Q90C 3GOBA 4QUQA 1Z03A 4NBHA 4HM1A 2XSHA 1NU1E 4NB8D 3H1KE 2BMOA 2XR8A 4EMJB 2NVFA 3GB4A 4HJLA 1VM9A 1EG9A 2BMRA 3GL0A 4NBCA 4NB9A 4NBFD 2HMKA 5AEWA 4H0LD 1ULJA 4HM3A 4U3FE 4NBBA 2GBWA 1O7MA 4NBEA 4HM8A 1NTZE 2NUMA 2E76D 5HL4A 3L72E 1BCCE 4QDFB 1SQQE 3H1HE 1Z02A 3GTSA 4P1CH 2JO6A 4NBDA 3VMHA 3AZCA 1SQBE 4PD4E 1UUVA 3L74E 4OGQD 2DE7A 4P1BH 1NYKA 4QCKA 1ZRTE 2QJYC 3GL2A 1O7NA 3EN1A 4HM0A 1KYOE 3VCPA 3GZYA 2B1XA 3GTEA 3FOUA 4NBAA 3L73E 4HKVA 1WQLA 1WW9A 1Z01A 4H44D 4NB8A 3L75E 3H1JE 1O7HA 4QURA 2DE6D 4AIVA 2E4QA 2HMNA 3BCCE 1RFSA 2DE5A 1JM1A 1ULIA 4QUPA 1SQVE 2FYUE 2JZAA 2BCCE 5KKZC 3CWBE 2YFLA 5KLIC 4HM6A 2HMOA 1O7WA 3DQYA 1VCKA 3CX5E 3GZXA 2XSOA 2ZYLA 5BOKA 2GBXA 4NBBD 3TGUE 2XRXA 3C0DA 2Q3WA 4QDDA 3VMIA 2CKFA 3CXHE 2D2CD 3VMGA 2NVEA 1G8KB 1FQTA 2IBZE 3L70E
chains in the Genus database with same CATH topology
3D89A 1O7PA 1UUWA 3GKEA 5CXMA 2YFIA 4NBGD 4QDCA 2I7FA 2QJKC 2BMQA 4HM7A 4NBFA 1BE3E 4HM2A 4NBHD 4AAYB 3EQQA 1EZVE 3H1IE 2DE6A 1L0LE 2B24A 2QJPC 4NBAD 3H1LE 4NBCD 4NB9D 3L71E 5KLVE 3GKQA 4HM5A 2E74D 1VF5D 2YIUC 1NTME 2NUKA 1SQPE 1L0NE 4NBED 2DE5D 3GCEA 1NDOA 1SQXE 2ZT9D 2A06E 4PV1D 2E75D 1SJGA 1PPJE 1O7GA 2YVJB 1RIEA 4HM4A 1P84E 4H13D 2HMJA 2FYNC 4NBDD 3VMHD 2QPZA 3VCAA 3N0QA 4QDFA 2HMLA 3GCFA 2E4PA 1G8JB 3VMID 4NBGA 2DE7D 1KB9E 3VMGD 2NVGA 5AEUA 1NTKE 2HMMA 2YFJA 1PP9E 2NWFA 1Q90C 3GOBA 4QUQA 1Z03A 4NBHA 4HM1A 2XSHA 1NU1E 4NB8D 3H1KE 2BMOA 2XR8A 4EMJB 2NVFA 3GB4A 4HJLA 1VM9A 1EG9A 2BMRA 3GL0A 4NBCA 4NB9A 4NBFD 2HMKA 5AEWA 4H0LD 1ULJA 4HM3A 4U3FE 4NBBA 2GBWA 1O7MA 4NBEA 4HM8A 1NTZE 2NUMA 2E76D 5HL4A 3L72E 1BCCE 4QDFB 1SQQE 3H1HE 1Z02A 3GTSA 4P1CH 2JO6A 4NBDA 3VMHA 3AZCA 1SQBE 4PD4E 1UUVA 3L74E 4OGQD 2DE7A 4P1BH 1NYKA 4QCKA 1ZRTE 2QJYC 3GL2A 1O7NA 3EN1A 4HM0A 1KYOE 3VCPA 3GZYA 2B1XA 3GTEA 3FOUA 4NBAA 3L73E 4HKVA 1WQLA 1WW9A 1Z01A 4H44D 4NB8A 3L75E 3H1JE 1O7HA 4QURA 2DE6D 4AIVA 2E4QA 2HMNA 3BCCE 1RFSA 2DE5A 1JM1A 1ULIA 4QUPA 1SQVE 2FYUE 2JZAA 2BCCE 5KKZC 3CWBE 2YFLA 5KLIC 4HM6A 2HMOA 1O7WA 3DQYA 1VCKA 3CX5E 3GZXA 2XSOA 2ZYLA 5BOKA 2GBXA 4NBBD 3TGUE 2XRXA 3C0DA 2Q3WA 4QDDA 3VMIA 2CKFA 3CXHE 2D2CD 3VMGA 2NVEA 1G8KB 1FQTA 2IBZE 3L70E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D89 A;  1O7P A;  1UUW A;  3GKE A;  5CXM A;  2YFI A;  4NBG D;  4QDC A;  2I7F A;  2QJK C;  2BMQ A;  4HM7 A;  4NBF A;  1BE3 E;  4HM2 A;  4NBH D;  4AAY B;  3EQQ A;  1EZV E;  3H1I E;  2DE6 A;  1L0L E;  2B24 A;  2QJP C;  4NBA D;  3H1L E;  4NBC D;  4NB9 D;  3L71 E;  5KLV E;  3GKQ A;  4HM5 A;  2E74 D;  1VF5 D;  2YIU C;  1NTM E;  2NUK A;  1SQP E;  1L0N E;  4NBE D;  2DE5 D;  3GCE A;  1NDO A;  1SQX E;  2ZT9 D;  2A06 E;  4PV1 D;  2E75 D;  1SJG A;  1PPJ E;  1O7G A;  2YVJ B;  1RIE A;  4HM4 A;  1P84 E;  4H13 D;  2HMJ A;  2FYN C;  4NBD D;  3VMH D;  2QPZ A;  3VCA A;  3N0Q A;  4QDF A;  2HML A;  3GCF A;  2E4P A;  1G8J B;  3VMI D;  4NBG A;  2DE7 D;  1KB9 E;  3VMG D;  2NVG A;  5AEU A;  1NTK E;  2HMM A;  2YFJ A;  1PP9 E;  2NWF A;  1Q90 C;  3GOB A;  4QUQ A;  1Z03 A;  4NBH A;  4HM1 A;  2XSH A;  1NU1 E;  4NB8 D;  3H1K E;  2BMO A;  2XR8 A;  4EMJ B;  2NVF A;  3GB4 A;  4HJL A;  1VM9 A;  1EG9 A;  2BMR A;  3GL0 A;  4NBC A;  4NB9 A;  4NBF D;  2HMK A;  5AEW A;  4H0L D;  1ULJ A;  4HM3 A;  4U3F E;  4NBB A;  2GBW A;  1O7M A;  4NBE A;  4HM8 A;  1NTZ E;  2NUM A;  2E76 D;  5HL4 A;  3L72 E;  1BCC E;  4QDF B;  1SQQ E;  3H1H E;  1Z02 A;  3GTS A;  4P1C H;  2JO6 A;  4NBD A;  3VMH A;  3AZC A;  1SQB E;  4PD4 E;  1UUV A;  3L74 E;  4OGQ D;  2DE7 A;  4P1B H;  1NYK A;  4QCK A;  1ZRT E;  2QJY C;  3GL2 A;  1O7N A;  3EN1 A;  4HM0 A;  1KYO E;  3VCP A;  3GZY A;  2B1X A;  3GTE A;  3FOU A;  4NBA A;  3L73 E;  4HKV A;  1WQL A;  1WW9 A;  1Z01 A;  4H44 D;  4NB8 A;  3L75 E;  3H1J E;  1O7H A;  4QUR A;  2DE6 D;  4AIV A;  2E4Q A;  2HMN A;  3BCC E;  1RFS A;  2DE5 A;  1JM1 A;  1ULI A;  4QUP A;  1SQV E;  2FYU E;  2JZA A;  2BCC E;  5KKZ C;  3CWB E;  2YFL A;  5KLI C;  4HM6 A;  2HMO A;  1O7W A;  3DQY A;  1VCK A;  3CX5 E;  3GZX A;  2XSO A;  2ZYL A;  5BOK A;  2GBX A;  4NBB D;  3TGU E;  2XRX A;  3C0D A;  2Q3W A;  4QDD A;  3VMI A;  2CKF A;  3CXH E;  2D2C D;  3VMG A;  2NVE A;  1G8K B;  1FQT A;  2IBZ E;  3L70 E; 
#chains in the Genus database with same CATH topology
 3D89 A;  1O7P A;  1UUW A;  3GKE A;  5CXM A;  2YFI A;  4NBG D;  4QDC A;  2I7F A;  2QJK C;  2BMQ A;  4HM7 A;  4NBF A;  1BE3 E;  4HM2 A;  4NBH D;  4AAY B;  3EQQ A;  1EZV E;  3H1I E;  2DE6 A;  1L0L E;  2B24 A;  2QJP C;  4NBA D;  3H1L E;  4NBC D;  4NB9 D;  3L71 E;  5KLV E;  3GKQ A;  4HM5 A;  2E74 D;  1VF5 D;  2YIU C;  1NTM E;  2NUK A;  1SQP E;  1L0N E;  4NBE D;  2DE5 D;  3GCE A;  1NDO A;  1SQX E;  2ZT9 D;  2A06 E;  4PV1 D;  2E75 D;  1SJG A;  1PPJ E;  1O7G A;  2YVJ B;  1RIE A;  4HM4 A;  1P84 E;  4H13 D;  2HMJ A;  2FYN C;  4NBD D;  3VMH D;  2QPZ A;  3VCA A;  3N0Q A;  4QDF A;  2HML A;  3GCF A;  2E4P A;  1G8J B;  3VMI D;  4NBG A;  2DE7 D;  1KB9 E;  3VMG D;  2NVG A;  5AEU A;  1NTK E;  2HMM A;  2YFJ A;  1PP9 E;  2NWF A;  1Q90 C;  3GOB A;  4QUQ A;  1Z03 A;  4NBH A;  4HM1 A;  2XSH A;  1NU1 E;  4NB8 D;  3H1K E;  2BMO A;  2XR8 A;  4EMJ B;  2NVF A;  3GB4 A;  4HJL A;  1VM9 A;  1EG9 A;  2BMR A;  3GL0 A;  4NBC A;  4NB9 A;  4NBF D;  2HMK A;  5AEW A;  4H0L D;  1ULJ A;  4HM3 A;  4U3F E;  4NBB A;  2GBW A;  1O7M A;  4NBE A;  4HM8 A;  1NTZ E;  2NUM A;  2E76 D;  5HL4 A;  3L72 E;  1BCC E;  4QDF B;  1SQQ E;  3H1H E;  1Z02 A;  3GTS A;  4P1C H;  2JO6 A;  4NBD A;  3VMH A;  3AZC A;  1SQB E;  4PD4 E;  1UUV A;  3L74 E;  4OGQ D;  2DE7 A;  4P1B H;  1NYK A;  4QCK A;  1ZRT E;  2QJY C;  3GL2 A;  1O7N A;  3EN1 A;  4HM0 A;  1KYO E;  3VCP A;  3GZY A;  2B1X A;  3GTE A;  3FOU A;  4NBA A;  3L73 E;  4HKV A;  1WQL A;  1WW9 A;  1Z01 A;  4H44 D;  4NB8 A;  3L75 E;  3H1J E;  1O7H A;  4QUR A;  2DE6 D;  4AIV A;  2E4Q A;  2HMN A;  3BCC E;  1RFS A;  2DE5 A;  1JM1 A;  1ULI A;  4QUP A;  1SQV E;  2FYU E;  2JZA A;  2BCC E;  5KKZ C;  3CWB E;  2YFL A;  5KLI C;  4HM6 A;  2HMO A;  1O7W A;  3DQY A;  1VCK A;  3CX5 E;  3GZX A;  2XSO A;  2ZYL A;  5BOK A;  2GBX A;  4NBB D;  3TGU E;  2XRX A;  3C0D A;  2Q3W A;  4QDD A;  3VMI A;  2CKF A;  3CXH E;  2D2C D;  3VMG A;  2NVE A;  1G8K B;  1FQT A;  2IBZ E;  3L70 E; 
#chains in the Genus database with same CATH homology
 3D89 A;  1O7P A;  1UUW A;  3GKE A;  5CXM A;  2YFI A;  4NBG D;  4QDC A;  2I7F A;  2QJK C;  2BMQ A;  4HM7 A;  4NBF A;  1BE3 E;  4HM2 A;  4NBH D;  4AAY B;  3EQQ A;  1EZV E;  3H1I E;  2DE6 A;  1L0L E;  2B24 A;  2QJP C;  4NBA D;  3H1L E;  4NBC D;  4NB9 D;  3L71 E;  5KLV E;  3GKQ A;  4HM5 A;  2E74 D;  1VF5 D;  2YIU C;  1NTM E;  2NUK A;  1SQP E;  1L0N E;  4NBE D;  2DE5 D;  3GCE A;  1NDO A;  1SQX E;  2ZT9 D;  2A06 E;  4PV1 D;  2E75 D;  1SJG A;  1PPJ E;  1O7G A;  2YVJ B;  1RIE A;  4HM4 A;  1P84 E;  4H13 D;  2HMJ A;  2FYN C;  4NBD D;  3VMH D;  2QPZ A;  3VCA A;  3N0Q A;  4QDF A;  2HML A;  3GCF A;  2E4P A;  1G8J B;  3VMI D;  4NBG A;  2DE7 D;  1KB9 E;  3VMG D;  2NVG A;  5AEU A;  1NTK E;  2HMM A;  2YFJ A;  1PP9 E;  2NWF A;  1Q90 C;  3GOB A;  4QUQ A;  1Z03 A;  4NBH A;  4HM1 A;  2XSH A;  1NU1 E;  4NB8 D;  3H1K E;  2BMO A;  2XR8 A;  4EMJ B;  2NVF A;  3GB4 A;  4HJL A;  1VM9 A;  1EG9 A;  2BMR A;  3GL0 A;  4NBC A;  4NB9 A;  4NBF D;  2HMK A;  5AEW A;  4H0L D;  1ULJ A;  4HM3 A;  4U3F E;  4NBB A;  2GBW A;  1O7M A;  4NBE A;  4HM8 A;  1NTZ E;  2NUM A;  2E76 D;  5HL4 A;  3L72 E;  1BCC E;  4QDF B;  1SQQ E;  3H1H E;  1Z02 A;  3GTS A;  4P1C H;  2JO6 A;  4NBD A;  3VMH A;  3AZC A;  1SQB E;  4PD4 E;  1UUV A;  3L74 E;  4OGQ D;  2DE7 A;  4P1B H;  1NYK A;  4QCK A;  1ZRT E;  2QJY C;  3GL2 A;  1O7N A;  3EN1 A;  4HM0 A;  1KYO E;  3VCP A;  3GZY A;  2B1X A;  3GTE A;  3FOU A;  4NBA A;  3L73 E;  4HKV A;  1WQL A;  1WW9 A;  1Z01 A;  4H44 D;  4NB8 A;  3L75 E;  3H1J E;  1O7H A;  4QUR A;  2DE6 D;  4AIV A;  2E4Q A;  2HMN A;  3BCC E;  1RFS A;  2DE5 A;  1JM1 A;  1ULI A;  4QUP A;  1SQV E;  2FYU E;  2JZA A;  2BCC E;  5KKZ C;  3CWB E;  2YFL A;  5KLI C;  4HM6 A;  2HMO A;  1O7W A;  3DQY A;  1VCK A;  3CX5 E;  3GZX A;  2XSO A;  2ZYL A;  5BOK A;  2GBX A;  4NBB D;  3TGU E;  2XRX A;  3C0D A;  2Q3W A;  4QDD A;  3VMI A;  2CKF A;  3CXH E;  2D2C D;  3VMG A;  2NVE A;  1G8K B;  1FQT A;  2IBZ E;  3L70 E; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...