4HM6A

Naphthalene 1,2-dioxygenase bound to phenetole
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
446
structure length
446
Chain Sequence
b'MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
publication title Naphthalene 1,2-Dioxygenase bound to phenetole
rcsb
source organism Pseudomonas sp. c18
molecule tags Oxidoreductase/oxidoreductase inhibitor
total genus 161
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm6A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm6A01
2YIUC 3L72E 3L73E 1RFSA 2NVGA 3GCFA 5KLVE 4NBCA 4HM8A 1Z03A 3VMIA 3C0DA 1NTKE 1O7HA 2HMMA 2DE6A 2XRXA 5CXMA 4OGQD 2E74D 4AIVA 3GOBA 3GZYA 4HM7A 3GTSA 4NBCD 4AAYB 2NUMA 3H1HE 4P1CH 2QJKC 3VCAA 1G8KB 2E4PA 3VMID 4NBDA 2DE6D 2QJYC 5HL4A 5KKZC 1ULJA 1L0NE 3L70E 2BCCE 4QUQA 2ZT9D 2YVJB 4P1BH 4NBDD 4NBAA 1VCKA 3L71E 1WW9A 1NYKA 2YFIA 2ZYLA 3GTEA 3GKQA 3VMGA 3CX5E 2NUKA 2A06E 1G8JB 1EZVE 4HM3A 4QCKA 2GBWA 5KLIC 1KYOE 1UUVA 5BOKA 5AEUA 4NBAD 1BE3E 1O7MA 3GKEA 3H1KE 4QDDA 4NBBA 2HMOA 3VCPA 4HJLA 3VMGD 2HMNA 3EQQA 4QDFB 2FYUE 2NWFA 3VMHA 1O7NA 1SQPE 3EN1A 2XSHA 3GB4A 2Q3WA 3GZXA 4NBFA 2CKFA 4NBEA 4HKVA 1FQTA 2XSOA 4HM4A 2GBXA 1PPJE 1Z02A 4QUPA 4NBBD 2NVFA 1P84E 3H1JE 4EMJB 1SQVE 2D2CD 4H0LD 4QURA 3D89A 4QDCA 3L74E 1KB9E 4U3FE 3VMHD 1BCCE 2DE5A 4NBHA 1SQBE 1L0LE 1ULIA 4NBFD 1NTZE 4NBED 4PD4E 4HM2A 2JO6A 3FOUA 3GL2A 1Z01A 4NB9A 1NU1E 3CWBE 1VF5D 1RIEA 1EG9A 2HMKA 2HMJA 1ZRTE 4NBGA 2DE5D 4HM5A 4NBHD 1SQXE 1O7WA 2E75D 2NVEA 2I7FA 4QDFA 2YFLA 2FYNC 2BMOA 3AZCA 4NB8A 2IBZE 4NB9D 1NTME 3TGUE 3GL0A 2DE7A 4H44D 1NDOA 4NBGD 1VM9A 1SQQE 1O7GA 3H1LE 1JM1A 1O7PA 1SJGA 1UUWA 2BMRA 3CXHE 2XR8A 4NB8D 2QPZA 2DE7D 1WQLA 2E4QA 2B24A 4HM6A 4PV1D 1PP9E 3H1IE 5AEWA 2HMLA 2BMQA 2E76D 2YFJA 3L75E 2QJPC 4HM1A 3DQYA 1Q90C 2JZAA 3BCCE 3GCEA 3N0QA 4H13D 4HM0A 2B1XA
chains in the Genus database with same CATH superfamily
2YIUC 3L72E 3L73E 1RFSA 2NVGA 3GCFA 5KLVE 4NBCA 4HM8A 1Z03A 3VMIA 3C0DA 1NTKE 1O7HA 2HMMA 2DE6A 2XRXA 5CXMA 4OGQD 2E74D 4AIVA 3GOBA 3GZYA 4HM7A 3GTSA 4NBCD 4AAYB 2NUMA 3H1HE 4P1CH 2QJKC 3VCAA 1G8KB 2E4PA 3VMID 4NBDA 2DE6D 2QJYC 5HL4A 5KKZC 1ULJA 1L0NE 3L70E 2BCCE 4QUQA 2ZT9D 2YVJB 4P1BH 4NBDD 4NBAA 1VCKA 3L71E 1WW9A 1NYKA 2YFIA 2ZYLA 3GTEA 3GKQA 3VMGA 3CX5E 2NUKA 2A06E 1G8JB 1EZVE 4HM3A 4QCKA 2GBWA 5KLIC 1KYOE 1UUVA 5BOKA 5AEUA 4NBAD 1BE3E 1O7MA 3GKEA 3H1KE 4QDDA 4NBBA 2HMOA 3VCPA 4HJLA 3VMGD 2HMNA 3EQQA 4QDFB 2FYUE 2NWFA 3VMHA 1O7NA 1SQPE 3EN1A 2XSHA 3GB4A 2Q3WA 3GZXA 4NBFA 2CKFA 4NBEA 4HKVA 1FQTA 2XSOA 4HM4A 2GBXA 1PPJE 1Z02A 4QUPA 4NBBD 2NVFA 1P84E 3H1JE 4EMJB 1SQVE 2D2CD 4H0LD 4QURA 3D89A 4QDCA 3L74E 1KB9E 4U3FE 3VMHD 1BCCE 2DE5A 4NBHA 1SQBE 1L0LE 1ULIA 4NBFD 1NTZE 4NBED 4PD4E 4HM2A 2JO6A 3FOUA 3GL2A 1Z01A 4NB9A 1NU1E 3CWBE 1VF5D 1RIEA 1EG9A 2HMKA 2HMJA 1ZRTE 4NBGA 2DE5D 4HM5A 4NBHD 1SQXE 1O7WA 2E75D 2NVEA 2I7FA 4QDFA 2YFLA 2FYNC 2BMOA 3AZCA 4NB8A 2IBZE 4NB9D 1NTME 3TGUE 3GL0A 2DE7A 4H44D 1NDOA 4NBGD 1VM9A 1SQQE 1O7GA 3H1LE 1JM1A 1O7PA 1SJGA 1UUWA 2BMRA 3CXHE 2XR8A 4NB8D 2QPZA 2DE7D 1WQLA 2E4QA 2B24A 4HM6A 4PV1D 1PP9E 3H1IE 5AEWA 2HMLA 2BMQA 2E76D 2YFJA 3L75E 2QJPC 4HM1A 3DQYA 1Q90C 2JZAA 3BCCE 3GCEA 3N0QA 4H13D 4HM0A 2B1XA
chains in the Genus database with same CATH topology
2YIUC 3L72E 3L73E 1RFSA 2NVGA 3GCFA 5KLVE 4NBCA 4HM8A 1Z03A 3VMIA 3C0DA 1NTKE 1O7HA 2HMMA 2DE6A 2XRXA 5CXMA 4OGQD 2E74D 4AIVA 3GOBA 3GZYA 4HM7A 3GTSA 4NBCD 4AAYB 2NUMA 3H1HE 4P1CH 2QJKC 3VCAA 1G8KB 2E4PA 3VMID 4NBDA 2DE6D 2QJYC 5HL4A 5KKZC 1ULJA 1L0NE 3L70E 2BCCE 4QUQA 2ZT9D 2YVJB 4P1BH 4NBDD 4NBAA 1VCKA 3L71E 1WW9A 1NYKA 2YFIA 2ZYLA 3GTEA 3GKQA 3VMGA 3CX5E 2NUKA 2A06E 1G8JB 1EZVE 4HM3A 4QCKA 2GBWA 5KLIC 1KYOE 1UUVA 5BOKA 5AEUA 4NBAD 1BE3E 1O7MA 3GKEA 3H1KE 4QDDA 4NBBA 2HMOA 3VCPA 4HJLA 3VMGD 2HMNA 3EQQA 4QDFB 2FYUE 2NWFA 3VMHA 1O7NA 1SQPE 3EN1A 2XSHA 3GB4A 2Q3WA 3GZXA 4NBFA 2CKFA 4NBEA 4HKVA 1FQTA 2XSOA 4HM4A 2GBXA 1PPJE 1Z02A 4QUPA 4NBBD 2NVFA 1P84E 3H1JE 4EMJB 1SQVE 2D2CD 4H0LD 4QURA 3D89A 4QDCA 3L74E 1KB9E 4U3FE 3VMHD 1BCCE 2DE5A 4NBHA 1SQBE 1L0LE 1ULIA 4NBFD 1NTZE 4NBED 4PD4E 4HM2A 2JO6A 3FOUA 3GL2A 1Z01A 4NB9A 1NU1E 3CWBE 1VF5D 1RIEA 1EG9A 2HMKA 2HMJA 1ZRTE 4NBGA 2DE5D 4HM5A 4NBHD 1SQXE 1O7WA 2E75D 2NVEA 2I7FA 4QDFA 2YFLA 2FYNC 2BMOA 3AZCA 4NB8A 2IBZE 4NB9D 1NTME 3TGUE 3GL0A 2DE7A 4H44D 1NDOA 4NBGD 1VM9A 1SQQE 1O7GA 3H1LE 1JM1A 1O7PA 1SJGA 1UUWA 2BMRA 3CXHE 2XR8A 4NB8D 2QPZA 2DE7D 1WQLA 2E4QA 2B24A 4HM6A 4PV1D 1PP9E 3H1IE 5AEWA 2HMLA 2BMQA 2E76D 2YFJA 3L75E 2QJPC 4HM1A 3DQYA 1Q90C 2JZAA 3BCCE 3GCEA 3N0QA 4H13D 4HM0A 2B1XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YIU C;  3L72 E;  3L73 E;  1RFS A;  2NVG A;  3GCF A;  5KLV E;  4NBC A;  4HM8 A;  1Z03 A;  3VMI A;  3C0D A;  1NTK E;  1O7H A;  2HMM A;  2DE6 A;  2XRX A;  5CXM A;  4OGQ D;  2E74 D;  4AIV A;  3GOB A;  3GZY A;  4HM7 A;  3GTS A;  4NBC D;  4AAY B;  2NUM A;  3H1H E;  4P1C H;  2QJK C;  3VCA A;  1G8K B;  2E4P A;  3VMI D;  4NBD A;  2DE6 D;  2QJY C;  5HL4 A;  5KKZ C;  1ULJ A;  1L0N E;  3L70 E;  2BCC E;  4QUQ A;  2ZT9 D;  2YVJ B;  4P1B H;  4NBD D;  4NBA A;  1VCK A;  3L71 E;  1WW9 A;  1NYK A;  2YFI A;  2ZYL A;  3GTE A;  3GKQ A;  3VMG A;  3CX5 E;  2NUK A;  2A06 E;  1G8J B;  1EZV E;  4HM3 A;  4QCK A;  2GBW A;  5KLI C;  1KYO E;  1UUV A;  5BOK A;  5AEU A;  4NBA D;  1BE3 E;  1O7M A;  3GKE A;  3H1K E;  4QDD A;  4NBB A;  2HMO A;  3VCP A;  4HJL A;  3VMG D;  2HMN A;  3EQQ A;  4QDF B;  2FYU E;  2NWF A;  3VMH A;  1O7N A;  1SQP E;  3EN1 A;  2XSH A;  3GB4 A;  2Q3W A;  3GZX A;  4NBF A;  2CKF A;  4NBE A;  4HKV A;  1FQT A;  2XSO A;  4HM4 A;  2GBX A;  1PPJ E;  1Z02 A;  4QUP A;  4NBB D;  2NVF A;  1P84 E;  3H1J E;  4EMJ B;  1SQV E;  2D2C D;  4H0L D;  4QUR A;  3D89 A;  4QDC A;  3L74 E;  1KB9 E;  4U3F E;  3VMH D;  1BCC E;  2DE5 A;  4NBH A;  1SQB E;  1L0L E;  1ULI A;  4NBF D;  1NTZ E;  4NBE D;  4PD4 E;  4HM2 A;  2JO6 A;  3FOU A;  3GL2 A;  1Z01 A;  4NB9 A;  1NU1 E;  3CWB E;  1VF5 D;  1RIE A;  1EG9 A;  2HMK A;  2HMJ A;  1ZRT E;  4NBG A;  2DE5 D;  4HM5 A;  4NBH D;  1SQX E;  1O7W A;  2E75 D;  2NVE A;  2I7F A;  4QDF A;  2YFL A;  2FYN C;  2BMO A;  3AZC A;  4NB8 A;  2IBZ E;  4NB9 D;  1NTM E;  3TGU E;  3GL0 A;  2DE7 A;  4H44 D;  1NDO A;  4NBG D;  1VM9 A;  1SQQ E;  1O7G A;  3H1L E;  1JM1 A;  1O7P A;  1SJG A;  1UUW A;  2BMR A;  3CXH E;  2XR8 A;  4NB8 D;  2QPZ A;  2DE7 D;  1WQL A;  2E4Q A;  2B24 A;  4HM6 A;  4PV1 D;  1PP9 E;  3H1I E;  5AEW A;  2HML A;  2BMQ A;  2E76 D;  2YFJ A;  3L75 E;  2QJP C;  4HM1 A;  3DQY A;  1Q90 C;  2JZA A;  3BCC E;  3GCE A;  3N0Q A;  4H13 D;  4HM0 A;  2B1X A; 
#chains in the Genus database with same CATH topology
 2YIU C;  3L72 E;  3L73 E;  1RFS A;  2NVG A;  3GCF A;  5KLV E;  4NBC A;  4HM8 A;  1Z03 A;  3VMI A;  3C0D A;  1NTK E;  1O7H A;  2HMM A;  2DE6 A;  2XRX A;  5CXM A;  4OGQ D;  2E74 D;  4AIV A;  3GOB A;  3GZY A;  4HM7 A;  3GTS A;  4NBC D;  4AAY B;  2NUM A;  3H1H E;  4P1C H;  2QJK C;  3VCA A;  1G8K B;  2E4P A;  3VMI D;  4NBD A;  2DE6 D;  2QJY C;  5HL4 A;  5KKZ C;  1ULJ A;  1L0N E;  3L70 E;  2BCC E;  4QUQ A;  2ZT9 D;  2YVJ B;  4P1B H;  4NBD D;  4NBA A;  1VCK A;  3L71 E;  1WW9 A;  1NYK A;  2YFI A;  2ZYL A;  3GTE A;  3GKQ A;  3VMG A;  3CX5 E;  2NUK A;  2A06 E;  1G8J B;  1EZV E;  4HM3 A;  4QCK A;  2GBW A;  5KLI C;  1KYO E;  1UUV A;  5BOK A;  5AEU A;  4NBA D;  1BE3 E;  1O7M A;  3GKE A;  3H1K E;  4QDD A;  4NBB A;  2HMO A;  3VCP A;  4HJL A;  3VMG D;  2HMN A;  3EQQ A;  4QDF B;  2FYU E;  2NWF A;  3VMH A;  1O7N A;  1SQP E;  3EN1 A;  2XSH A;  3GB4 A;  2Q3W A;  3GZX A;  4NBF A;  2CKF A;  4NBE A;  4HKV A;  1FQT A;  2XSO A;  4HM4 A;  2GBX A;  1PPJ E;  1Z02 A;  4QUP A;  4NBB D;  2NVF A;  1P84 E;  3H1J E;  4EMJ B;  1SQV E;  2D2C D;  4H0L D;  4QUR A;  3D89 A;  4QDC A;  3L74 E;  1KB9 E;  4U3F E;  3VMH D;  1BCC E;  2DE5 A;  4NBH A;  1SQB E;  1L0L E;  1ULI A;  4NBF D;  1NTZ E;  4NBE D;  4PD4 E;  4HM2 A;  2JO6 A;  3FOU A;  3GL2 A;  1Z01 A;  4NB9 A;  1NU1 E;  3CWB E;  1VF5 D;  1RIE A;  1EG9 A;  2HMK A;  2HMJ A;  1ZRT E;  4NBG A;  2DE5 D;  4HM5 A;  4NBH D;  1SQX E;  1O7W A;  2E75 D;  2NVE A;  2I7F A;  4QDF A;  2YFL A;  2FYN C;  2BMO A;  3AZC A;  4NB8 A;  2IBZ E;  4NB9 D;  1NTM E;  3TGU E;  3GL0 A;  2DE7 A;  4H44 D;  1NDO A;  4NBG D;  1VM9 A;  1SQQ E;  1O7G A;  3H1L E;  1JM1 A;  1O7P A;  1SJG A;  1UUW A;  2BMR A;  3CXH E;  2XR8 A;  4NB8 D;  2QPZ A;  2DE7 D;  1WQL A;  2E4Q A;  2B24 A;  4HM6 A;  4PV1 D;  1PP9 E;  3H1I E;  5AEW A;  2HML A;  2BMQ A;  2E76 D;  2YFJ A;  3L75 E;  2QJP C;  4HM1 A;  3DQY A;  1Q90 C;  2JZA A;  3BCC E;  3GCE A;  3N0Q A;  4H13 D;  4HM0 A;  2B1X A; 
#chains in the Genus database with same CATH homology
 2YIU C;  3L72 E;  3L73 E;  1RFS A;  2NVG A;  3GCF A;  5KLV E;  4NBC A;  4HM8 A;  1Z03 A;  3VMI A;  3C0D A;  1NTK E;  1O7H A;  2HMM A;  2DE6 A;  2XRX A;  5CXM A;  4OGQ D;  2E74 D;  4AIV A;  3GOB A;  3GZY A;  4HM7 A;  3GTS A;  4NBC D;  4AAY B;  2NUM A;  3H1H E;  4P1C H;  2QJK C;  3VCA A;  1G8K B;  2E4P A;  3VMI D;  4NBD A;  2DE6 D;  2QJY C;  5HL4 A;  5KKZ C;  1ULJ A;  1L0N E;  3L70 E;  2BCC E;  4QUQ A;  2ZT9 D;  2YVJ B;  4P1B H;  4NBD D;  4NBA A;  1VCK A;  3L71 E;  1WW9 A;  1NYK A;  2YFI A;  2ZYL A;  3GTE A;  3GKQ A;  3VMG A;  3CX5 E;  2NUK A;  2A06 E;  1G8J B;  1EZV E;  4HM3 A;  4QCK A;  2GBW A;  5KLI C;  1KYO E;  1UUV A;  5BOK A;  5AEU A;  4NBA D;  1BE3 E;  1O7M A;  3GKE A;  3H1K E;  4QDD A;  4NBB A;  2HMO A;  3VCP A;  4HJL A;  3VMG D;  2HMN A;  3EQQ A;  4QDF B;  2FYU E;  2NWF A;  3VMH A;  1O7N A;  1SQP E;  3EN1 A;  2XSH A;  3GB4 A;  2Q3W A;  3GZX A;  4NBF A;  2CKF A;  4NBE A;  4HKV A;  1FQT A;  2XSO A;  4HM4 A;  2GBX A;  1PPJ E;  1Z02 A;  4QUP A;  4NBB D;  2NVF A;  1P84 E;  3H1J E;  4EMJ B;  1SQV E;  2D2C D;  4H0L D;  4QUR A;  3D89 A;  4QDC A;  3L74 E;  1KB9 E;  4U3F E;  3VMH D;  1BCC E;  2DE5 A;  4NBH A;  1SQB E;  1L0L E;  1ULI A;  4NBF D;  1NTZ E;  4NBE D;  4PD4 E;  4HM2 A;  2JO6 A;  3FOU A;  3GL2 A;  1Z01 A;  4NB9 A;  1NU1 E;  3CWB E;  1VF5 D;  1RIE A;  1EG9 A;  2HMK A;  2HMJ A;  1ZRT E;  4NBG A;  2DE5 D;  4HM5 A;  4NBH D;  1SQX E;  1O7W A;  2E75 D;  2NVE A;  2I7F A;  4QDF A;  2YFL A;  2FYN C;  2BMO A;  3AZC A;  4NB8 A;  2IBZ E;  4NB9 D;  1NTM E;  3TGU E;  3GL0 A;  2DE7 A;  4H44 D;  1NDO A;  4NBG D;  1VM9 A;  1SQQ E;  1O7G A;  3H1L E;  1JM1 A;  1O7P A;  1SJG A;  1UUW A;  2BMR A;  3CXH E;  2XR8 A;  4NB8 D;  2QPZ A;  2DE7 D;  1WQL A;  2E4Q A;  2B24 A;  4HM6 A;  4PV1 D;  1PP9 E;  3H1I E;  5AEW A;  2HML A;  2BMQ A;  2E76 D;  2YFJ A;  3L75 E;  2QJP C;  4HM1 A;  3DQY A;  1Q90 C;  2JZA A;  3BCC E;  3GCE A;  3N0Q A;  4H13 D;  4HM0 A;  2B1X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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