4NBGD

Oxygenase with gln282 replaced by tyr and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Terminal oxygenase component of carbazole
publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 17
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbgD00
3VMGD 4EMJB 3D89A 5CXMA 2BMOA 3AZCA 5AEUA 2HMKA 2XSHA 4P1CH 2QJKC 3GZYA 4NBED 1NTZE 2NUMA 3H1KE 2DE7D 4HM6A 3GCEA 1VF5D 4QDFB 2QPZA 3GL0A 4QURA 3VMHD 1G8JB 4HM3A 2E74D 1ZRTE 3FOUA 4AAYB 2YIUC 4NBDD 4H0LD 5KLVE 1WQLA 3GOBA 1NYKA 1FQTA 1VM9A 1SJGA 3GKEA 2FYUE 4NB9D 4QUPA 2GBXA 2ZT9D 2GBWA 2NVFA 1EG9A 1VCKA 2QJPC 2XSOA 2DE5D 2E76D 3CXHE 4QCKA 3H1HE 3VCAA 2I7FA 1ULJA 2E4PA 3L72E 1O7HA 4NB8D 5HL4A 1NTME 2HMLA 1SQBE 2DE6D 2NVGA 3GZXA 1RFSA 4OGQD 4H44D 3GL2A 3TGUE 4HJLA 1KB9E 2HMOA 3VMID 2XR8A 1O7GA 1L0NE 4HM5A 1O7PA 2QJYC 4HKVA 4AIVA 3L71E 4HM7A 2CKFA 1KYOE 2JO6A 2A06E 5KKZC 2YFIA 1PP9E 3GTEA 1SQXE 2YFJA 3L75E 4NBAD 2B24A 3L74E 4NBHD 2D2CD 1G8KB 2BMRA 4PD4E 2NVEA 2HMJA 4HM8A 1ULIA 1NTKE 4NBBD 1NDOA 2NUKA 2NWFA 2BMQA 3H1JE 2HMNA 5AEWA 3DQYA 2XRXA 1SQVE 3BCCE 3L73E 2B1XA 3EN1A 4NBCD 1BCCE 2JZAA 2HMMA 4QDCA 4HM2A 1JM1A 2Q3WA 4PV1D 5BOKA 3GB4A 1UUWA 3CWBE 4QUQA 2E4QA 3EQQA 3H1LE 3C0DA 1SQPE 3VCPA 4QDFA 2E75D 2ZYLA 4U3FE 1NU1E 4NBGD 4H13D 4HM0A 4HM1A 1Q90C 4P1BH 1BE3E 2BCCE 1SQQE 3N0QA 4NBFD 2IBZE 1PPJE 1O7MA 3L70E 1O7NA 4HM4A 1RIEA 1L0LE 3H1IE 1O7WA 5KLIC 1UUVA 3CX5E 2YFLA 3GTSA 4QDDA 2YVJB 1P84E 1EZVE 2FYNC
chains in the Genus database with same CATH superfamily
3VMGD 4EMJB 3D89A 5CXMA 2BMOA 3AZCA 5AEUA 2HMKA 2XSHA 4P1CH 2QJKC 3GZYA 4NBED 1NTZE 2NUMA 3H1KE 2DE7D 4HM6A 3GCEA 1VF5D 4QDFB 2QPZA 3GL0A 4QURA 3VMHD 1G8JB 4HM3A 2E74D 1ZRTE 3FOUA 4AAYB 2YIUC 4NBDD 4H0LD 5KLVE 1WQLA 3GOBA 1NYKA 1FQTA 1VM9A 1SJGA 3GKEA 2FYUE 4NB9D 4QUPA 2GBXA 2ZT9D 2GBWA 2NVFA 1EG9A 1VCKA 2QJPC 2XSOA 2DE5D 2E76D 3CXHE 4QCKA 3H1HE 3VCAA 2I7FA 1ULJA 2E4PA 3L72E 1O7HA 4NB8D 5HL4A 1NTME 2HMLA 1SQBE 2DE6D 2NVGA 3GZXA 1RFSA 4OGQD 4H44D 3GL2A 3TGUE 4HJLA 1KB9E 2HMOA 3VMID 2XR8A 1O7GA 1L0NE 4HM5A 1O7PA 2QJYC 4HKVA 4AIVA 3L71E 4HM7A 2CKFA 1KYOE 2JO6A 2A06E 5KKZC 2YFIA 1PP9E 3GTEA 1SQXE 2YFJA 3L75E 4NBAD 2B24A 3L74E 4NBHD 2D2CD 1G8KB 2BMRA 4PD4E 2NVEA 2HMJA 4HM8A 1ULIA 1NTKE 4NBBD 1NDOA 2NUKA 2NWFA 2BMQA 3H1JE 2HMNA 5AEWA 3DQYA 2XRXA 1SQVE 3BCCE 3L73E 2B1XA 3EN1A 4NBCD 1BCCE 2JZAA 2HMMA 4QDCA 4HM2A 1JM1A 2Q3WA 4PV1D 5BOKA 3GB4A 1UUWA 3CWBE 4QUQA 2E4QA 3EQQA 3H1LE 3C0DA 1SQPE 3VCPA 4QDFA 2E75D 2ZYLA 4U3FE 1NU1E 4NBGD 4H13D 4HM0A 4HM1A 1Q90C 4P1BH 1BE3E 2BCCE 1SQQE 3N0QA 4NBFD 2IBZE 1PPJE 1O7MA 3L70E 1O7NA 4HM4A 1RIEA 1L0LE 3H1IE 1O7WA 5KLIC 1UUVA 3CX5E 2YFLA 3GTSA 4QDDA 2YVJB 1P84E 1EZVE 2FYNC
chains in the Genus database with same CATH topology
3VMGD 4EMJB 3D89A 5CXMA 2BMOA 3AZCA 5AEUA 2HMKA 2XSHA 4P1CH 2QJKC 3GZYA 4NBED 1NTZE 2NUMA 3H1KE 2DE7D 4HM6A 3GCEA 1VF5D 4QDFB 2QPZA 3GL0A 4QURA 3VMHD 1G8JB 4HM3A 2E74D 1ZRTE 3FOUA 4AAYB 2YIUC 4NBDD 4H0LD 5KLVE 1WQLA 3GOBA 1NYKA 1FQTA 1VM9A 1SJGA 3GKEA 2FYUE 4NB9D 4QUPA 2GBXA 2ZT9D 2GBWA 2NVFA 1EG9A 1VCKA 2QJPC 2XSOA 2DE5D 2E76D 3CXHE 4QCKA 3H1HE 3VCAA 2I7FA 1ULJA 2E4PA 3L72E 1O7HA 4NB8D 5HL4A 1NTME 2HMLA 1SQBE 2DE6D 2NVGA 3GZXA 1RFSA 4OGQD 4H44D 3GL2A 3TGUE 4HJLA 1KB9E 2HMOA 3VMID 2XR8A 1O7GA 1L0NE 4HM5A 1O7PA 2QJYC 4HKVA 4AIVA 3L71E 4HM7A 2CKFA 1KYOE 2JO6A 2A06E 5KKZC 2YFIA 1PP9E 3GTEA 1SQXE 2YFJA 3L75E 4NBAD 2B24A 3L74E 4NBHD 2D2CD 1G8KB 2BMRA 4PD4E 2NVEA 2HMJA 4HM8A 1ULIA 1NTKE 4NBBD 1NDOA 2NUKA 2NWFA 2BMQA 3H1JE 2HMNA 5AEWA 3DQYA 2XRXA 1SQVE 3BCCE 3L73E 2B1XA 3EN1A 4NBCD 1BCCE 2JZAA 2HMMA 4QDCA 4HM2A 1JM1A 2Q3WA 4PV1D 5BOKA 3GB4A 1UUWA 3CWBE 4QUQA 2E4QA 3EQQA 3H1LE 3C0DA 1SQPE 3VCPA 4QDFA 2E75D 2ZYLA 4U3FE 1NU1E 4NBGD 4H13D 4HM0A 4HM1A 1Q90C 4P1BH 1BE3E 2BCCE 1SQQE 3N0QA 4NBFD 2IBZE 1PPJE 1O7MA 3L70E 1O7NA 4HM4A 1RIEA 1L0LE 3H1IE 1O7WA 5KLIC 1UUVA 3CX5E 2YFLA 3GTSA 4QDDA 2YVJB 1P84E 1EZVE 2FYNC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VMG D;  4EMJ B;  3D89 A;  5CXM A;  2BMO A;  3AZC A;  5AEU A;  2HMK A;  2XSH A;  4P1C H;  2QJK C;  3GZY A;  4NBE D;  1NTZ E;  2NUM A;  3H1K E;  2DE7 D;  4HM6 A;  3GCE A;  1VF5 D;  4QDF B;  2QPZ A;  3GL0 A;  4QUR A;  3VMH D;  1G8J B;  4HM3 A;  2E74 D;  1ZRT E;  3FOU A;  4AAY B;  2YIU C;  4NBD D;  4H0L D;  5KLV E;  1WQL A;  3GOB A;  1NYK A;  1FQT A;  1VM9 A;  1SJG A;  3GKE A;  2FYU E;  4NB9 D;  4QUP A;  2GBX A;  2ZT9 D;  2GBW A;  2NVF A;  1EG9 A;  1VCK A;  2QJP C;  2XSO A;  2DE5 D;  2E76 D;  3CXH E;  4QCK A;  3H1H E;  3VCA A;  2I7F A;  1ULJ A;  2E4P A;  3L72 E;  1O7H A;  4NB8 D;  5HL4 A;  1NTM E;  2HML A;  1SQB E;  2DE6 D;  2NVG A;  3GZX A;  1RFS A;  4OGQ D;  4H44 D;  3GL2 A;  3TGU E;  4HJL A;  1KB9 E;  2HMO A;  3VMI D;  2XR8 A;  1O7G A;  1L0N E;  4HM5 A;  1O7P A;  2QJY C;  4HKV A;  4AIV A;  3L71 E;  4HM7 A;  2CKF A;  1KYO E;  2JO6 A;  2A06 E;  5KKZ C;  2YFI A;  1PP9 E;  3GTE A;  1SQX E;  2YFJ A;  3L75 E;  4NBA D;  2B24 A;  3L74 E;  4NBH D;  2D2C D;  1G8K B;  2BMR A;  4PD4 E;  2NVE A;  2HMJ A;  4HM8 A;  1ULI A;  1NTK E;  4NBB D;  1NDO A;  2NUK A;  2NWF A;  2BMQ A;  3H1J E;  2HMN A;  5AEW A;  3DQY A;  2XRX A;  1SQV E;  3BCC E;  3L73 E;  2B1X A;  3EN1 A;  4NBC D;  1BCC E;  2JZA A;  2HMM A;  4QDC A;  4HM2 A;  1JM1 A;  2Q3W A;  4PV1 D;  5BOK A;  3GB4 A;  1UUW A;  3CWB E;  4QUQ A;  2E4Q A;  3EQQ A;  3H1L E;  3C0D A;  1SQP E;  3VCP A;  4QDF A;  2E75 D;  2ZYL A;  4U3F E;  1NU1 E;  4NBG D;  4H13 D;  4HM0 A;  4HM1 A;  1Q90 C;  4P1B H;  1BE3 E;  2BCC E;  1SQQ E;  3N0Q A;  4NBF D;  2IBZ E;  1PPJ E;  1O7M A;  3L70 E;  1O7N A;  4HM4 A;  1RIE A;  1L0L E;  3H1I E;  1O7W A;  5KLI C;  1UUV A;  3CX5 E;  2YFL A;  3GTS A;  4QDD A;  2YVJ B;  1P84 E;  1EZV E;  2FYN C; 
#chains in the Genus database with same CATH topology
 3VMG D;  4EMJ B;  3D89 A;  5CXM A;  2BMO A;  3AZC A;  5AEU A;  2HMK A;  2XSH A;  4P1C H;  2QJK C;  3GZY A;  4NBE D;  1NTZ E;  2NUM A;  3H1K E;  2DE7 D;  4HM6 A;  3GCE A;  1VF5 D;  4QDF B;  2QPZ A;  3GL0 A;  4QUR A;  3VMH D;  1G8J B;  4HM3 A;  2E74 D;  1ZRT E;  3FOU A;  4AAY B;  2YIU C;  4NBD D;  4H0L D;  5KLV E;  1WQL A;  3GOB A;  1NYK A;  1FQT A;  1VM9 A;  1SJG A;  3GKE A;  2FYU E;  4NB9 D;  4QUP A;  2GBX A;  2ZT9 D;  2GBW A;  2NVF A;  1EG9 A;  1VCK A;  2QJP C;  2XSO A;  2DE5 D;  2E76 D;  3CXH E;  4QCK A;  3H1H E;  3VCA A;  2I7F A;  1ULJ A;  2E4P A;  3L72 E;  1O7H A;  4NB8 D;  5HL4 A;  1NTM E;  2HML A;  1SQB E;  2DE6 D;  2NVG A;  3GZX A;  1RFS A;  4OGQ D;  4H44 D;  3GL2 A;  3TGU E;  4HJL A;  1KB9 E;  2HMO A;  3VMI D;  2XR8 A;  1O7G A;  1L0N E;  4HM5 A;  1O7P A;  2QJY C;  4HKV A;  4AIV A;  3L71 E;  4HM7 A;  2CKF A;  1KYO E;  2JO6 A;  2A06 E;  5KKZ C;  2YFI A;  1PP9 E;  3GTE A;  1SQX E;  2YFJ A;  3L75 E;  4NBA D;  2B24 A;  3L74 E;  4NBH D;  2D2C D;  1G8K B;  2BMR A;  4PD4 E;  2NVE A;  2HMJ A;  4HM8 A;  1ULI A;  1NTK E;  4NBB D;  1NDO A;  2NUK A;  2NWF A;  2BMQ A;  3H1J E;  2HMN A;  5AEW A;  3DQY A;  2XRX A;  1SQV E;  3BCC E;  3L73 E;  2B1X A;  3EN1 A;  4NBC D;  1BCC E;  2JZA A;  2HMM A;  4QDC A;  4HM2 A;  1JM1 A;  2Q3W A;  4PV1 D;  5BOK A;  3GB4 A;  1UUW A;  3CWB E;  4QUQ A;  2E4Q A;  3EQQ A;  3H1L E;  3C0D A;  1SQP E;  3VCP A;  4QDF A;  2E75 D;  2ZYL A;  4U3F E;  1NU1 E;  4NBG D;  4H13 D;  4HM0 A;  4HM1 A;  1Q90 C;  4P1B H;  1BE3 E;  2BCC E;  1SQQ E;  3N0Q A;  4NBF D;  2IBZ E;  1PPJ E;  1O7M A;  3L70 E;  1O7N A;  4HM4 A;  1RIE A;  1L0L E;  3H1I E;  1O7W A;  5KLI C;  1UUV A;  3CX5 E;  2YFL A;  3GTS A;  4QDD A;  2YVJ B;  1P84 E;  1EZV E;  2FYN C; 
#chains in the Genus database with same CATH homology
 3VMG D;  4EMJ B;  3D89 A;  5CXM A;  2BMO A;  3AZC A;  5AEU A;  2HMK A;  2XSH A;  4P1C H;  2QJK C;  3GZY A;  4NBE D;  1NTZ E;  2NUM A;  3H1K E;  2DE7 D;  4HM6 A;  3GCE A;  1VF5 D;  4QDF B;  2QPZ A;  3GL0 A;  4QUR A;  3VMH D;  1G8J B;  4HM3 A;  2E74 D;  1ZRT E;  3FOU A;  4AAY B;  2YIU C;  4NBD D;  4H0L D;  5KLV E;  1WQL A;  3GOB A;  1NYK A;  1FQT A;  1VM9 A;  1SJG A;  3GKE A;  2FYU E;  4NB9 D;  4QUP A;  2GBX A;  2ZT9 D;  2GBW A;  2NVF A;  1EG9 A;  1VCK A;  2QJP C;  2XSO A;  2DE5 D;  2E76 D;  3CXH E;  4QCK A;  3H1H E;  3VCA A;  2I7F A;  1ULJ A;  2E4P A;  3L72 E;  1O7H A;  4NB8 D;  5HL4 A;  1NTM E;  2HML A;  1SQB E;  2DE6 D;  2NVG A;  3GZX A;  1RFS A;  4OGQ D;  4H44 D;  3GL2 A;  3TGU E;  4HJL A;  1KB9 E;  2HMO A;  3VMI D;  2XR8 A;  1O7G A;  1L0N E;  4HM5 A;  1O7P A;  2QJY C;  4HKV A;  4AIV A;  3L71 E;  4HM7 A;  2CKF A;  1KYO E;  2JO6 A;  2A06 E;  5KKZ C;  2YFI A;  1PP9 E;  3GTE A;  1SQX E;  2YFJ A;  3L75 E;  4NBA D;  2B24 A;  3L74 E;  4NBH D;  2D2C D;  1G8K B;  2BMR A;  4PD4 E;  2NVE A;  2HMJ A;  4HM8 A;  1ULI A;  1NTK E;  4NBB D;  1NDO A;  2NUK A;  2NWF A;  2BMQ A;  3H1J E;  2HMN A;  5AEW A;  3DQY A;  2XRX A;  1SQV E;  3BCC E;  3L73 E;  2B1X A;  3EN1 A;  4NBC D;  1BCC E;  2JZA A;  2HMM A;  4QDC A;  4HM2 A;  1JM1 A;  2Q3W A;  4PV1 D;  5BOK A;  3GB4 A;  1UUW A;  3CWB E;  4QUQ A;  2E4Q A;  3EQQ A;  3H1L E;  3C0D A;  1SQP E;  3VCP A;  4QDF A;  2E75 D;  2ZYL A;  4U3F E;  1NU1 E;  4NBG D;  4H13 D;  4HM0 A;  4HM1 A;  1Q90 C;  4P1B H;  1BE3 E;  2BCC E;  1SQQ E;  3N0Q A;  4NBF D;  2IBZ E;  1PPJ E;  1O7M A;  3L70 E;  1O7N A;  4HM4 A;  1RIE A;  1L0L E;  3H1I E;  1O7W A;  5KLI C;  1UUV A;  3CX5 E;  2YFL A;  3GTS A;  4QDD A;  2YVJ B;  1P84 E;  1EZV E;  2FYN C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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