4NBGD

Oxygenase with gln282 replaced by tyr and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Terminal oxygenase component of carbazole
publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
total genus 17
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbgD00
1NYKA 4HM3A 2NVGA 1ZRTE 2IBZE 1Q90C 2NVEA 5BOKA 4HM5A 2FYUE 4QDFB 2BMOA 1BE3E 4NB9D 4HM8A 3VCPA 2JZAA 4OGQD 1P84E 4PD4E 2NUKA 2NVFA 4NBFD 2A06E 1VM9A 2QPZA 1UUWA 3GCEA 1G8JB 1NTME 1WQLA 3L74E 2YFJA 5KLIC 3GKEA 1RIEA 4NBED 1NDOA 1BCCE 3FOUA 3D89A 3GZYA 4NBCD 3N0QA 3VMID 1PP9E 4HM6A 2ZT9D 3GTSA 3GTEA 3EQQA 4HM0A 4NBBD 4QDDA 1O7HA 2Q3WA 4PV1D 4QURA 2CKFA 5AEUA 4U3FE 4QDCA 1RFSA 2HMNA 2DE5D 1EG9A 2HMKA 5CXMA 4EMJB 2DE7D 3L72E 1SQBE 2YIUC 2JO6A 3H1KE 1ULJA 5HL4A 4H0LD 4HM4A 4QUQA 1L0NE 1JM1A 1NTZE 1ULIA 3C0DA 4H13D 1SQPE 3CWBE 2DE6D 3VCAA 2FYNC 1EZVE 3GB4A 4NBDD 2B24A 2HMOA 2QJPC 3DQYA 4NBHD 4QDFA 1NU1E 2BCCE 2BMRA 2E75D 4HJLA 4HM1A 1O7WA 2B1XA 3CXHE 3BCCE 4HM2A 2NWFA 2HMJA 3L73E 1KYOE 3TGUE 2YFLA 2E4QA 1VCKA 4H44D 4NB8D 2GBXA 2XSHA 4NBGD 2BMQA 3L71E 4P1BH 2YVJB 2E4PA 1KB9E 2XRXA 2GBWA 2ZYLA 1L0LE 4HM7A 3H1IE 2HMMA 4HKVA 4AAYB 5KLVE 2I7FA 1VF5D 4NBAD 4QCKA 2NUMA 3AZCA 1SQXE 2D2CD 5KKZC 1SQQE 1G8KB 3VMHD 3H1JE 4P1CH 3CX5E 3GL0A 2XSOA 3L70E 3VMGD 1NTKE 3GZXA 3L75E 4QUPA 1O7MA 1PPJE 1SQVE 3H1LE 1SJGA 1FQTA 1O7NA 3GL2A 4AIVA 5AEWA 2XR8A 1O7PA 1UUVA 2E76D 2QJKC 1O7GA 2HMLA 3GOBA 3H1HE 2E74D 2QJYC 3EN1A 2YFIA
chains in the Genus database with same CATH superfamily
1NYKA 4HM3A 2NVGA 1ZRTE 2IBZE 1Q90C 2NVEA 5BOKA 4HM5A 2FYUE 4QDFB 2BMOA 1BE3E 4NB9D 4HM8A 3VCPA 2JZAA 4OGQD 1P84E 4PD4E 2NUKA 2NVFA 4NBFD 2A06E 1VM9A 2QPZA 1UUWA 3GCEA 1G8JB 1NTME 1WQLA 3L74E 2YFJA 5KLIC 3GKEA 1RIEA 4NBED 1NDOA 1BCCE 3FOUA 3D89A 3GZYA 4NBCD 3N0QA 3VMID 1PP9E 4HM6A 2ZT9D 3GTSA 3GTEA 3EQQA 4HM0A 4NBBD 4QDDA 1O7HA 2Q3WA 4PV1D 4QURA 2CKFA 5AEUA 4U3FE 4QDCA 1RFSA 2HMNA 2DE5D 1EG9A 2HMKA 5CXMA 4EMJB 2DE7D 3L72E 1SQBE 2YIUC 2JO6A 3H1KE 1ULJA 5HL4A 4H0LD 4HM4A 4QUQA 1L0NE 1JM1A 1NTZE 1ULIA 3C0DA 4H13D 1SQPE 3CWBE 2DE6D 3VCAA 2FYNC 1EZVE 3GB4A 4NBDD 2B24A 2HMOA 2QJPC 3DQYA 4NBHD 4QDFA 1NU1E 2BCCE 2BMRA 2E75D 4HJLA 4HM1A 1O7WA 2B1XA 3CXHE 3BCCE 4HM2A 2NWFA 2HMJA 3L73E 1KYOE 3TGUE 2YFLA 2E4QA 1VCKA 4H44D 4NB8D 2GBXA 2XSHA 4NBGD 2BMQA 3L71E 4P1BH 2YVJB 2E4PA 1KB9E 2XRXA 2GBWA 2ZYLA 1L0LE 4HM7A 3H1IE 2HMMA 4HKVA 4AAYB 5KLVE 2I7FA 1VF5D 4NBAD 4QCKA 2NUMA 3AZCA 1SQXE 2D2CD 5KKZC 1SQQE 1G8KB 3VMHD 3H1JE 4P1CH 3CX5E 3GL0A 2XSOA 3L70E 3VMGD 1NTKE 3GZXA 3L75E 4QUPA 1O7MA 1PPJE 1SQVE 3H1LE 1SJGA 1FQTA 1O7NA 3GL2A 4AIVA 5AEWA 2XR8A 1O7PA 1UUVA 2E76D 2QJKC 1O7GA 2HMLA 3GOBA 3H1HE 2E74D 2QJYC 3EN1A 2YFIA
chains in the Genus database with same CATH topology
1NYKA 4HM3A 2NVGA 1ZRTE 2IBZE 1Q90C 2NVEA 5BOKA 4HM5A 2FYUE 4QDFB 2BMOA 1BE3E 4NB9D 4HM8A 3VCPA 2JZAA 4OGQD 1P84E 4PD4E 2NUKA 2NVFA 4NBFD 2A06E 1VM9A 2QPZA 1UUWA 3GCEA 1G8JB 1NTME 1WQLA 3L74E 2YFJA 5KLIC 3GKEA 1RIEA 4NBED 1NDOA 1BCCE 3FOUA 3D89A 3GZYA 4NBCD 3N0QA 3VMID 1PP9E 4HM6A 2ZT9D 3GTSA 3GTEA 3EQQA 4HM0A 4NBBD 4QDDA 1O7HA 2Q3WA 4PV1D 4QURA 2CKFA 5AEUA 4U3FE 4QDCA 1RFSA 2HMNA 2DE5D 1EG9A 2HMKA 5CXMA 4EMJB 2DE7D 3L72E 1SQBE 2YIUC 2JO6A 3H1KE 1ULJA 5HL4A 4H0LD 4HM4A 4QUQA 1L0NE 1JM1A 1NTZE 1ULIA 3C0DA 4H13D 1SQPE 3CWBE 2DE6D 3VCAA 2FYNC 1EZVE 3GB4A 4NBDD 2B24A 2HMOA 2QJPC 3DQYA 4NBHD 4QDFA 1NU1E 2BCCE 2BMRA 2E75D 4HJLA 4HM1A 1O7WA 2B1XA 3CXHE 3BCCE 4HM2A 2NWFA 2HMJA 3L73E 1KYOE 3TGUE 2YFLA 2E4QA 1VCKA 4H44D 4NB8D 2GBXA 2XSHA 4NBGD 2BMQA 3L71E 4P1BH 2YVJB 2E4PA 1KB9E 2XRXA 2GBWA 2ZYLA 1L0LE 4HM7A 3H1IE 2HMMA 4HKVA 4AAYB 5KLVE 2I7FA 1VF5D 4NBAD 4QCKA 2NUMA 3AZCA 1SQXE 2D2CD 5KKZC 1SQQE 1G8KB 3VMHD 3H1JE 4P1CH 3CX5E 3GL0A 2XSOA 3L70E 3VMGD 1NTKE 3GZXA 3L75E 4QUPA 1O7MA 1PPJE 1SQVE 3H1LE 1SJGA 1FQTA 1O7NA 3GL2A 4AIVA 5AEWA 2XR8A 1O7PA 1UUVA 2E76D 2QJKC 1O7GA 2HMLA 3GOBA 3H1HE 2E74D 2QJYC 3EN1A 2YFIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NYK A;  4HM3 A;  2NVG A;  1ZRT E;  2IBZ E;  1Q90 C;  2NVE A;  5BOK A;  4HM5 A;  2FYU E;  4QDF B;  2BMO A;  1BE3 E;  4NB9 D;  4HM8 A;  3VCP A;  2JZA A;  4OGQ D;  1P84 E;  4PD4 E;  2NUK A;  2NVF A;  4NBF D;  2A06 E;  1VM9 A;  2QPZ A;  1UUW A;  3GCE A;  1G8J B;  1NTM E;  1WQL A;  3L74 E;  2YFJ A;  5KLI C;  3GKE A;  1RIE A;  4NBE D;  1NDO A;  1BCC E;  3FOU A;  3D89 A;  3GZY A;  4NBC D;  3N0Q A;  3VMI D;  1PP9 E;  4HM6 A;  2ZT9 D;  3GTS A;  3GTE A;  3EQQ A;  4HM0 A;  4NBB D;  4QDD A;  1O7H A;  2Q3W A;  4PV1 D;  4QUR A;  2CKF A;  5AEU A;  4U3F E;  4QDC A;  1RFS A;  2HMN A;  2DE5 D;  1EG9 A;  2HMK A;  5CXM A;  4EMJ B;  2DE7 D;  3L72 E;  1SQB E;  2YIU C;  2JO6 A;  3H1K E;  1ULJ A;  5HL4 A;  4H0L D;  4HM4 A;  4QUQ A;  1L0N E;  1JM1 A;  1NTZ E;  1ULI A;  3C0D A;  4H13 D;  1SQP E;  3CWB E;  2DE6 D;  3VCA A;  2FYN C;  1EZV E;  3GB4 A;  4NBD D;  2B24 A;  2HMO A;  2QJP C;  3DQY A;  4NBH D;  4QDF A;  1NU1 E;  2BCC E;  2BMR A;  2E75 D;  4HJL A;  4HM1 A;  1O7W A;  2B1X A;  3CXH E;  3BCC E;  4HM2 A;  2NWF A;  2HMJ A;  3L73 E;  1KYO E;  3TGU E;  2YFL A;  2E4Q A;  1VCK A;  4H44 D;  4NB8 D;  2GBX A;  2XSH A;  4NBG D;  2BMQ A;  3L71 E;  4P1B H;  2YVJ B;  2E4P A;  1KB9 E;  2XRX A;  2GBW A;  2ZYL A;  1L0L E;  4HM7 A;  3H1I E;  2HMM A;  4HKV A;  4AAY B;  5KLV E;  2I7F A;  1VF5 D;  4NBA D;  4QCK A;  2NUM A;  3AZC A;  1SQX E;  2D2C D;  5KKZ C;  1SQQ E;  1G8K B;  3VMH D;  3H1J E;  4P1C H;  3CX5 E;  3GL0 A;  2XSO A;  3L70 E;  3VMG D;  1NTK E;  3GZX A;  3L75 E;  4QUP A;  1O7M A;  1PPJ E;  1SQV E;  3H1L E;  1SJG A;  1FQT A;  1O7N A;  3GL2 A;  4AIV A;  5AEW A;  2XR8 A;  1O7P A;  1UUV A;  2E76 D;  2QJK C;  1O7G A;  2HML A;  3GOB A;  3H1H E;  2E74 D;  2QJY C;  3EN1 A;  2YFI A; 
#chains in the Genus database with same CATH topology
 1NYK A;  4HM3 A;  2NVG A;  1ZRT E;  2IBZ E;  1Q90 C;  2NVE A;  5BOK A;  4HM5 A;  2FYU E;  4QDF B;  2BMO A;  1BE3 E;  4NB9 D;  4HM8 A;  3VCP A;  2JZA A;  4OGQ D;  1P84 E;  4PD4 E;  2NUK A;  2NVF A;  4NBF D;  2A06 E;  1VM9 A;  2QPZ A;  1UUW A;  3GCE A;  1G8J B;  1NTM E;  1WQL A;  3L74 E;  2YFJ A;  5KLI C;  3GKE A;  1RIE A;  4NBE D;  1NDO A;  1BCC E;  3FOU A;  3D89 A;  3GZY A;  4NBC D;  3N0Q A;  3VMI D;  1PP9 E;  4HM6 A;  2ZT9 D;  3GTS A;  3GTE A;  3EQQ A;  4HM0 A;  4NBB D;  4QDD A;  1O7H A;  2Q3W A;  4PV1 D;  4QUR A;  2CKF A;  5AEU A;  4U3F E;  4QDC A;  1RFS A;  2HMN A;  2DE5 D;  1EG9 A;  2HMK A;  5CXM A;  4EMJ B;  2DE7 D;  3L72 E;  1SQB E;  2YIU C;  2JO6 A;  3H1K E;  1ULJ A;  5HL4 A;  4H0L D;  4HM4 A;  4QUQ A;  1L0N E;  1JM1 A;  1NTZ E;  1ULI A;  3C0D A;  4H13 D;  1SQP E;  3CWB E;  2DE6 D;  3VCA A;  2FYN C;  1EZV E;  3GB4 A;  4NBD D;  2B24 A;  2HMO A;  2QJP C;  3DQY A;  4NBH D;  4QDF A;  1NU1 E;  2BCC E;  2BMR A;  2E75 D;  4HJL A;  4HM1 A;  1O7W A;  2B1X A;  3CXH E;  3BCC E;  4HM2 A;  2NWF A;  2HMJ A;  3L73 E;  1KYO E;  3TGU E;  2YFL A;  2E4Q A;  1VCK A;  4H44 D;  4NB8 D;  2GBX A;  2XSH A;  4NBG D;  2BMQ A;  3L71 E;  4P1B H;  2YVJ B;  2E4P A;  1KB9 E;  2XRX A;  2GBW A;  2ZYL A;  1L0L E;  4HM7 A;  3H1I E;  2HMM A;  4HKV A;  4AAY B;  5KLV E;  2I7F A;  1VF5 D;  4NBA D;  4QCK A;  2NUM A;  3AZC A;  1SQX E;  2D2C D;  5KKZ C;  1SQQ E;  1G8K B;  3VMH D;  3H1J E;  4P1C H;  3CX5 E;  3GL0 A;  2XSO A;  3L70 E;  3VMG D;  1NTK E;  3GZX A;  3L75 E;  4QUP A;  1O7M A;  1PPJ E;  1SQV E;  3H1L E;  1SJG A;  1FQT A;  1O7N A;  3GL2 A;  4AIV A;  5AEW A;  2XR8 A;  1O7P A;  1UUV A;  2E76 D;  2QJK C;  1O7G A;  2HML A;  3GOB A;  3H1H E;  2E74 D;  2QJY C;  3EN1 A;  2YFI A; 
#chains in the Genus database with same CATH homology
 1NYK A;  4HM3 A;  2NVG A;  1ZRT E;  2IBZ E;  1Q90 C;  2NVE A;  5BOK A;  4HM5 A;  2FYU E;  4QDF B;  2BMO A;  1BE3 E;  4NB9 D;  4HM8 A;  3VCP A;  2JZA A;  4OGQ D;  1P84 E;  4PD4 E;  2NUK A;  2NVF A;  4NBF D;  2A06 E;  1VM9 A;  2QPZ A;  1UUW A;  3GCE A;  1G8J B;  1NTM E;  1WQL A;  3L74 E;  2YFJ A;  5KLI C;  3GKE A;  1RIE A;  4NBE D;  1NDO A;  1BCC E;  3FOU A;  3D89 A;  3GZY A;  4NBC D;  3N0Q A;  3VMI D;  1PP9 E;  4HM6 A;  2ZT9 D;  3GTS A;  3GTE A;  3EQQ A;  4HM0 A;  4NBB D;  4QDD A;  1O7H A;  2Q3W A;  4PV1 D;  4QUR A;  2CKF A;  5AEU A;  4U3F E;  4QDC A;  1RFS A;  2HMN A;  2DE5 D;  1EG9 A;  2HMK A;  5CXM A;  4EMJ B;  2DE7 D;  3L72 E;  1SQB E;  2YIU C;  2JO6 A;  3H1K E;  1ULJ A;  5HL4 A;  4H0L D;  4HM4 A;  4QUQ A;  1L0N E;  1JM1 A;  1NTZ E;  1ULI A;  3C0D A;  4H13 D;  1SQP E;  3CWB E;  2DE6 D;  3VCA A;  2FYN C;  1EZV E;  3GB4 A;  4NBD D;  2B24 A;  2HMO A;  2QJP C;  3DQY A;  4NBH D;  4QDF A;  1NU1 E;  2BCC E;  2BMR A;  2E75 D;  4HJL A;  4HM1 A;  1O7W A;  2B1X A;  3CXH E;  3BCC E;  4HM2 A;  2NWF A;  2HMJ A;  3L73 E;  1KYO E;  3TGU E;  2YFL A;  2E4Q A;  1VCK A;  4H44 D;  4NB8 D;  2GBX A;  2XSH A;  4NBG D;  2BMQ A;  3L71 E;  4P1B H;  2YVJ B;  2E4P A;  1KB9 E;  2XRX A;  2GBW A;  2ZYL A;  1L0L E;  4HM7 A;  3H1I E;  2HMM A;  4HKV A;  4AAY B;  5KLV E;  2I7F A;  1VF5 D;  4NBA D;  4QCK A;  2NUM A;  3AZC A;  1SQX E;  2D2C D;  5KKZ C;  1SQQ E;  1G8K B;  3VMH D;  3H1J E;  4P1C H;  3CX5 E;  3GL0 A;  2XSO A;  3L70 E;  3VMG D;  1NTK E;  3GZX A;  3L75 E;  4QUP A;  1O7M A;  1PPJ E;  1SQV E;  3H1L E;  1SJG A;  1FQT A;  1O7N A;  3GL2 A;  4AIV A;  5AEW A;  2XR8 A;  1O7P A;  1UUV A;  2E76 D;  2QJK C;  1O7G A;  2HML A;  3GOB A;  3H1H E;  2E74 D;  2QJY C;  3EN1 A;  2YFI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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