4NBGD

Oxygenase with gln282 replaced by tyr and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
molecule keywords Terminal oxygenase component of carbazole
total genus 17
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbgD00
3L74E 1O7WA 3BCCE 2QJYC 3GZXA 4NBED 1KB9E 1SJGA 2YVJB 4QUPA 3GKEA 4HM0A 1L0LE 3GOBA 4H44D 1SQBE 1EG9A 3H1JE 4OGQD 2QPZA 3H1LE 5AEWA 4PV1D 1O7NA 4HKVA 2HMNA 3GL0A 3L72E 3GTEA 4NBCD 4QDCA 3H1KE 1ULJA 3CX5E 4HM2A 4NB8D 3TGUE 2JO6A 3CWBE 4EMJB 4QDFB 3L71E 2A06E 3N0QA 4QUQA 5KKZC 5CXMA 4NBBD 4HM5A 5KLIC 2E4QA 1SQVE 3GTSA 4U3FE 4AAYB 1ULIA 4NBHD 2QJKC 1PP9E 3D89A 3GB4A 4NB9D 4NBDD 2NUMA 4PD4E 2NWFA 3VMGD 2XSHA 2B1XA 4NBAD 5HL4A 2E75D 2BMRA 2NVGA 1NTME 1G8JB 1O7HA 4HM7A 2ZYLA 2YIUC 2ZT9D 2E4PA 1FQTA 3H1HE 2E74D 2D2CD 2GBXA 1RFSA 1O7MA 2GBWA 1VM9A 2XSOA 1VF5D 2HMOA 3GCEA 4HM6A 1Q90C 4P1CH 1WQLA 1KYOE 2DE6D 2YFJA 4HM4A 3L73E 2DE7D 4HJLA 2DE5D 4HM3A 1ZRTE 2FYUE 5BOKA 2YFLA 4NBFD 4QCKA 2CKFA 2QJPC 2XRXA 3VMID 2FYNC 4NBGD 1SQQE 1BE3E 3C0DA 4P1BH 1RIEA 2BCCE 2NVEA 2NUKA 2XR8A 2HMJA 3EN1A 3H1IE 3GZYA 1NYKA 1JM1A 3VMHD 3VCPA 3VCAA 3CXHE 2IBZE 4QDDA 5AEUA 4AIVA 1L0NE 1NU1E 1O7PA 1PPJE 4H0LD 2E76D 1UUVA 2B24A 3EQQA 2NVFA 4H13D 1NTZE 1G8KB 5KLVE 4QURA 1VCKA 4HM8A 2HMLA 4HM1A 1EZVE 1SQXE 1UUWA 2I7FA 1NTKE 2BMOA 4QDFA 3DQYA 3FOUA 1P84E 1SQPE 2Q3WA 3AZCA 2YFIA 1BCCE 1O7GA 3L75E 1NDOA 3L70E 2JZAA 3GL2A 2BMQA 2HMKA 2HMMA
chains in the Genus database with same CATH superfamily
3L74E 1O7WA 3BCCE 2QJYC 3GZXA 4NBED 1KB9E 1SJGA 2YVJB 4QUPA 3GKEA 4HM0A 1L0LE 3GOBA 4H44D 1SQBE 1EG9A 3H1JE 4OGQD 2QPZA 3H1LE 5AEWA 4PV1D 1O7NA 4HKVA 2HMNA 3GL0A 3L72E 3GTEA 4NBCD 4QDCA 3H1KE 1ULJA 3CX5E 4HM2A 4NB8D 3TGUE 2JO6A 3CWBE 4EMJB 4QDFB 3L71E 2A06E 3N0QA 4QUQA 5KKZC 5CXMA 4NBBD 4HM5A 5KLIC 2E4QA 1SQVE 3GTSA 4U3FE 4AAYB 1ULIA 4NBHD 2QJKC 1PP9E 3D89A 3GB4A 4NB9D 4NBDD 2NUMA 4PD4E 2NWFA 3VMGD 2XSHA 2B1XA 4NBAD 5HL4A 2E75D 2BMRA 2NVGA 1NTME 1G8JB 1O7HA 4HM7A 2ZYLA 2YIUC 2ZT9D 2E4PA 1FQTA 3H1HE 2E74D 2D2CD 2GBXA 1RFSA 1O7MA 2GBWA 1VM9A 2XSOA 1VF5D 2HMOA 3GCEA 4HM6A 1Q90C 4P1CH 1WQLA 1KYOE 2DE6D 2YFJA 4HM4A 3L73E 2DE7D 4HJLA 2DE5D 4HM3A 1ZRTE 2FYUE 5BOKA 2YFLA 4NBFD 4QCKA 2CKFA 2QJPC 2XRXA 3VMID 2FYNC 4NBGD 1SQQE 1BE3E 3C0DA 4P1BH 1RIEA 2BCCE 2NVEA 2NUKA 2XR8A 2HMJA 3EN1A 3H1IE 3GZYA 1NYKA 1JM1A 3VMHD 3VCPA 3VCAA 3CXHE 2IBZE 4QDDA 5AEUA 4AIVA 1L0NE 1NU1E 1O7PA 1PPJE 4H0LD 2E76D 1UUVA 2B24A 3EQQA 2NVFA 4H13D 1NTZE 1G8KB 5KLVE 4QURA 1VCKA 4HM8A 2HMLA 4HM1A 1EZVE 1SQXE 1UUWA 2I7FA 1NTKE 2BMOA 4QDFA 3DQYA 3FOUA 1P84E 1SQPE 2Q3WA 3AZCA 2YFIA 1BCCE 1O7GA 3L75E 1NDOA 3L70E 2JZAA 3GL2A 2BMQA 2HMKA 2HMMA
chains in the Genus database with same CATH topology
3L74E 1O7WA 3BCCE 2QJYC 3GZXA 4NBED 1KB9E 1SJGA 2YVJB 4QUPA 3GKEA 4HM0A 1L0LE 3GOBA 4H44D 1SQBE 1EG9A 3H1JE 4OGQD 2QPZA 3H1LE 5AEWA 4PV1D 1O7NA 4HKVA 2HMNA 3GL0A 3L72E 3GTEA 4NBCD 4QDCA 3H1KE 1ULJA 3CX5E 4HM2A 4NB8D 3TGUE 2JO6A 3CWBE 4EMJB 4QDFB 3L71E 2A06E 3N0QA 4QUQA 5KKZC 5CXMA 4NBBD 4HM5A 5KLIC 2E4QA 1SQVE 3GTSA 4U3FE 4AAYB 1ULIA 4NBHD 2QJKC 1PP9E 3D89A 3GB4A 4NB9D 4NBDD 2NUMA 4PD4E 2NWFA 3VMGD 2XSHA 2B1XA 4NBAD 5HL4A 2E75D 2BMRA 2NVGA 1NTME 1G8JB 1O7HA 4HM7A 2ZYLA 2YIUC 2ZT9D 2E4PA 1FQTA 3H1HE 2E74D 2D2CD 2GBXA 1RFSA 1O7MA 2GBWA 1VM9A 2XSOA 1VF5D 2HMOA 3GCEA 4HM6A 1Q90C 4P1CH 1WQLA 1KYOE 2DE6D 2YFJA 4HM4A 3L73E 2DE7D 4HJLA 2DE5D 4HM3A 1ZRTE 2FYUE 5BOKA 2YFLA 4NBFD 4QCKA 2CKFA 2QJPC 2XRXA 3VMID 2FYNC 4NBGD 1SQQE 1BE3E 3C0DA 4P1BH 1RIEA 2BCCE 2NVEA 2NUKA 2XR8A 2HMJA 3EN1A 3H1IE 3GZYA 1NYKA 1JM1A 3VMHD 3VCPA 3VCAA 3CXHE 2IBZE 4QDDA 5AEUA 4AIVA 1L0NE 1NU1E 1O7PA 1PPJE 4H0LD 2E76D 1UUVA 2B24A 3EQQA 2NVFA 4H13D 1NTZE 1G8KB 5KLVE 4QURA 1VCKA 4HM8A 2HMLA 4HM1A 1EZVE 1SQXE 1UUWA 2I7FA 1NTKE 2BMOA 4QDFA 3DQYA 3FOUA 1P84E 1SQPE 2Q3WA 3AZCA 2YFIA 1BCCE 1O7GA 3L75E 1NDOA 3L70E 2JZAA 3GL2A 2BMQA 2HMKA 2HMMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L74 E;  1O7W A;  3BCC E;  2QJY C;  3GZX A;  4NBE D;  1KB9 E;  1SJG A;  2YVJ B;  4QUP A;  3GKE A;  4HM0 A;  1L0L E;  3GOB A;  4H44 D;  1SQB E;  1EG9 A;  3H1J E;  4OGQ D;  2QPZ A;  3H1L E;  5AEW A;  4PV1 D;  1O7N A;  4HKV A;  2HMN A;  3GL0 A;  3L72 E;  3GTE A;  4NBC D;  4QDC A;  3H1K E;  1ULJ A;  3CX5 E;  4HM2 A;  4NB8 D;  3TGU E;  2JO6 A;  3CWB E;  4EMJ B;  4QDF B;  3L71 E;  2A06 E;  3N0Q A;  4QUQ A;  5KKZ C;  5CXM A;  4NBB D;  4HM5 A;  5KLI C;  2E4Q A;  1SQV E;  3GTS A;  4U3F E;  4AAY B;  1ULI A;  4NBH D;  2QJK C;  1PP9 E;  3D89 A;  3GB4 A;  4NB9 D;  4NBD D;  2NUM A;  4PD4 E;  2NWF A;  3VMG D;  2XSH A;  2B1X A;  4NBA D;  5HL4 A;  2E75 D;  2BMR A;  2NVG A;  1NTM E;  1G8J B;  1O7H A;  4HM7 A;  2ZYL A;  2YIU C;  2ZT9 D;  2E4P A;  1FQT A;  3H1H E;  2E74 D;  2D2C D;  2GBX A;  1RFS A;  1O7M A;  2GBW A;  1VM9 A;  2XSO A;  1VF5 D;  2HMO A;  3GCE A;  4HM6 A;  1Q90 C;  4P1C H;  1WQL A;  1KYO E;  2DE6 D;  2YFJ A;  4HM4 A;  3L73 E;  2DE7 D;  4HJL A;  2DE5 D;  4HM3 A;  1ZRT E;  2FYU E;  5BOK A;  2YFL A;  4NBF D;  4QCK A;  2CKF A;  2QJP C;  2XRX A;  3VMI D;  2FYN C;  4NBG D;  1SQQ E;  1BE3 E;  3C0D A;  4P1B H;  1RIE A;  2BCC E;  2NVE A;  2NUK A;  2XR8 A;  2HMJ A;  3EN1 A;  3H1I E;  3GZY A;  1NYK A;  1JM1 A;  3VMH D;  3VCP A;  3VCA A;  3CXH E;  2IBZ E;  4QDD A;  5AEU A;  4AIV A;  1L0N E;  1NU1 E;  1O7P A;  1PPJ E;  4H0L D;  2E76 D;  1UUV A;  2B24 A;  3EQQ A;  2NVF A;  4H13 D;  1NTZ E;  1G8K B;  5KLV E;  4QUR A;  1VCK A;  4HM8 A;  2HML A;  4HM1 A;  1EZV E;  1SQX E;  1UUW A;  2I7F A;  1NTK E;  2BMO A;  4QDF A;  3DQY A;  3FOU A;  1P84 E;  1SQP E;  2Q3W A;  3AZC A;  2YFI A;  1BCC E;  1O7G A;  3L75 E;  1NDO A;  3L70 E;  2JZA A;  3GL2 A;  2BMQ A;  2HMK A;  2HMM A; 
#chains in the Genus database with same CATH topology
 3L74 E;  1O7W A;  3BCC E;  2QJY C;  3GZX A;  4NBE D;  1KB9 E;  1SJG A;  2YVJ B;  4QUP A;  3GKE A;  4HM0 A;  1L0L E;  3GOB A;  4H44 D;  1SQB E;  1EG9 A;  3H1J E;  4OGQ D;  2QPZ A;  3H1L E;  5AEW A;  4PV1 D;  1O7N A;  4HKV A;  2HMN A;  3GL0 A;  3L72 E;  3GTE A;  4NBC D;  4QDC A;  3H1K E;  1ULJ A;  3CX5 E;  4HM2 A;  4NB8 D;  3TGU E;  2JO6 A;  3CWB E;  4EMJ B;  4QDF B;  3L71 E;  2A06 E;  3N0Q A;  4QUQ A;  5KKZ C;  5CXM A;  4NBB D;  4HM5 A;  5KLI C;  2E4Q A;  1SQV E;  3GTS A;  4U3F E;  4AAY B;  1ULI A;  4NBH D;  2QJK C;  1PP9 E;  3D89 A;  3GB4 A;  4NB9 D;  4NBD D;  2NUM A;  4PD4 E;  2NWF A;  3VMG D;  2XSH A;  2B1X A;  4NBA D;  5HL4 A;  2E75 D;  2BMR A;  2NVG A;  1NTM E;  1G8J B;  1O7H A;  4HM7 A;  2ZYL A;  2YIU C;  2ZT9 D;  2E4P A;  1FQT A;  3H1H E;  2E74 D;  2D2C D;  2GBX A;  1RFS A;  1O7M A;  2GBW A;  1VM9 A;  2XSO A;  1VF5 D;  2HMO A;  3GCE A;  4HM6 A;  1Q90 C;  4P1C H;  1WQL A;  1KYO E;  2DE6 D;  2YFJ A;  4HM4 A;  3L73 E;  2DE7 D;  4HJL A;  2DE5 D;  4HM3 A;  1ZRT E;  2FYU E;  5BOK A;  2YFL A;  4NBF D;  4QCK A;  2CKF A;  2QJP C;  2XRX A;  3VMI D;  2FYN C;  4NBG D;  1SQQ E;  1BE3 E;  3C0D A;  4P1B H;  1RIE A;  2BCC E;  2NVE A;  2NUK A;  2XR8 A;  2HMJ A;  3EN1 A;  3H1I E;  3GZY A;  1NYK A;  1JM1 A;  3VMH D;  3VCP A;  3VCA A;  3CXH E;  2IBZ E;  4QDD A;  5AEU A;  4AIV A;  1L0N E;  1NU1 E;  1O7P A;  1PPJ E;  4H0L D;  2E76 D;  1UUV A;  2B24 A;  3EQQ A;  2NVF A;  4H13 D;  1NTZ E;  1G8K B;  5KLV E;  4QUR A;  1VCK A;  4HM8 A;  2HML A;  4HM1 A;  1EZV E;  1SQX E;  1UUW A;  2I7F A;  1NTK E;  2BMO A;  4QDF A;  3DQY A;  3FOU A;  1P84 E;  1SQP E;  2Q3W A;  3AZC A;  2YFI A;  1BCC E;  1O7G A;  3L75 E;  1NDO A;  3L70 E;  2JZA A;  3GL2 A;  2BMQ A;  2HMK A;  2HMM A; 
#chains in the Genus database with same CATH homology
 3L74 E;  1O7W A;  3BCC E;  2QJY C;  3GZX A;  4NBE D;  1KB9 E;  1SJG A;  2YVJ B;  4QUP A;  3GKE A;  4HM0 A;  1L0L E;  3GOB A;  4H44 D;  1SQB E;  1EG9 A;  3H1J E;  4OGQ D;  2QPZ A;  3H1L E;  5AEW A;  4PV1 D;  1O7N A;  4HKV A;  2HMN A;  3GL0 A;  3L72 E;  3GTE A;  4NBC D;  4QDC A;  3H1K E;  1ULJ A;  3CX5 E;  4HM2 A;  4NB8 D;  3TGU E;  2JO6 A;  3CWB E;  4EMJ B;  4QDF B;  3L71 E;  2A06 E;  3N0Q A;  4QUQ A;  5KKZ C;  5CXM A;  4NBB D;  4HM5 A;  5KLI C;  2E4Q A;  1SQV E;  3GTS A;  4U3F E;  4AAY B;  1ULI A;  4NBH D;  2QJK C;  1PP9 E;  3D89 A;  3GB4 A;  4NB9 D;  4NBD D;  2NUM A;  4PD4 E;  2NWF A;  3VMG D;  2XSH A;  2B1X A;  4NBA D;  5HL4 A;  2E75 D;  2BMR A;  2NVG A;  1NTM E;  1G8J B;  1O7H A;  4HM7 A;  2ZYL A;  2YIU C;  2ZT9 D;  2E4P A;  1FQT A;  3H1H E;  2E74 D;  2D2C D;  2GBX A;  1RFS A;  1O7M A;  2GBW A;  1VM9 A;  2XSO A;  1VF5 D;  2HMO A;  3GCE A;  4HM6 A;  1Q90 C;  4P1C H;  1WQL A;  1KYO E;  2DE6 D;  2YFJ A;  4HM4 A;  3L73 E;  2DE7 D;  4HJL A;  2DE5 D;  4HM3 A;  1ZRT E;  2FYU E;  5BOK A;  2YFL A;  4NBF D;  4QCK A;  2CKF A;  2QJP C;  2XRX A;  3VMI D;  2FYN C;  4NBG D;  1SQQ E;  1BE3 E;  3C0D A;  4P1B H;  1RIE A;  2BCC E;  2NVE A;  2NUK A;  2XR8 A;  2HMJ A;  3EN1 A;  3H1I E;  3GZY A;  1NYK A;  1JM1 A;  3VMH D;  3VCP A;  3VCA A;  3CXH E;  2IBZ E;  4QDD A;  5AEU A;  4AIV A;  1L0N E;  1NU1 E;  1O7P A;  1PPJ E;  4H0L D;  2E76 D;  1UUV A;  2B24 A;  3EQQ A;  2NVF A;  4H13 D;  1NTZ E;  1G8K B;  5KLV E;  4QUR A;  1VCK A;  4HM8 A;  2HML A;  4HM1 A;  1EZV E;  1SQX E;  1UUW A;  2I7F A;  1NTK E;  2BMO A;  4QDF A;  3DQY A;  3FOU A;  1P84 E;  1SQP E;  2Q3W A;  3AZC A;  2YFI A;  1BCC E;  1O7G A;  3L75 E;  1NDO A;  3L70 E;  2JZA A;  3GL2 A;  2BMQ A;  2HMK A;  2HMM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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