1NDOA

Naphthalene 1,2-dioxygenase
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
447
structure length
447
Chain Sequence
b'MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords NAPHTHALENE 1,2-DIOXYGENASE
publication title Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase.
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Non-heme iron dioxygenase
total genus 160
structure length 447
sequence length 447
chains with identical sequence C, E
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 1998-01-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1ndoA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1ndoA01
1SJGA 1L0LE 3GCFA 2NVGA 2DE6A 5AEUA 2YFJA 2E74D 4NBGA 2XR8A 2JO6A 1RFSA 4NBDA 3VMHA 2DE7A 1O7GA 4HM2A 3VCAA 1WW9A 3CXHE 1NYKA 2QJYC 1SQPE 1FQTA 3GKEA 1Z01A 1O7PA 2BMQA 2E4PA 4NBGD 1VCKA 2GBXA 3C0DA 5HL4A 3VMHD 2A06E 2DE5D 1BCCE 2YVJB 4HM4A 2XSHA 2HMMA 1SQQE 4PD4E 1NTZE 5AEWA 1Z02A 3N0QA 2NUKA 2IBZE 4NBHD 2ZYLA 4NBFA 5KKZC 1NDOA 4EMJB 5CXMA 3GZXA 1G8JB 3FOUA 2QJPC 2QPZA 2B24A 4HJLA 4AIVA 2NVEA 3GL2A 3AZCA 4HM6A 3GTSA 4OGQD 4QUQA 1O7HA 1UUVA 2B1XA 2DE5A 1O7NA 4NBFD 1Z03A 2YFIA 1WQLA 2YFLA 4NBEA 3L73E 4HKVA 4P1CH 4NBHA 3L75E 3L70E 4NB9A 1L0NE 3CX5E 1NTME 4H0LD 4P1BH 3D89A 2BCCE 3VMID 5KLVE 4NBED 3L72E 1O7WA 3GB4A 1SQVE 4NB8A 4QUPA 1O7MA 4NB9D 4QURA 2E76D 3VCPA 1P84E 1BE3E 4AAYB 1PP9E 1SQXE 4PV1D 2XSOA 4QDFB 2HMOA 2NWFA 4QDDA 4HM7A 1PPJE 4NBBD 4QDFA 3L74E 1RIEA 3H1KE 4NBCD 1Q90C 4NB8D 1NTKE 1EG9A 3VMIA 4HM0A 1NU1E 2NVFA 2ZT9D 2JZAA 5KLIC 4NBAA 4U3FE 4QDCA 2D2CD 2YIUC 2QJKC 1KB9E 3EQQA 3VMGA 3TGUE 2NUMA 1VM9A 2HMKA 4NBBA 3H1IE 4HM8A 2I7FA 5BOKA 4NBCA 1UUWA 4H44D 4NBAD 2Q3WA 1JM1A 3GCEA 4HM3A 1VF5D 3GOBA 1SQBE 3GTEA 3DQYA 3GZYA 2BMOA 1KYOE 3GKQA 1ZRTE 2HMLA 3VMGD 2HMNA 2BMRA 1G8KB 1ULIA 2FYUE 3H1JE 3BCCE 2HMJA 2DE6D 2E4QA 2E75D 3CWBE 3GL0A 2XRXA 3EN1A 4NBDD 3H1HE 2DE7D 4HM1A 4QCKA 4HM5A 3L71E 1ULJA 4H13D 3H1LE 2CKFA 2GBWA 2FYNC 1EZVE
chains in the Genus database with same CATH superfamily
1SJGA 1L0LE 3GCFA 2NVGA 2DE6A 5AEUA 2YFJA 2E74D 4NBGA 2XR8A 2JO6A 1RFSA 4NBDA 3VMHA 2DE7A 1O7GA 4HM2A 3VCAA 1WW9A 3CXHE 1NYKA 2QJYC 1SQPE 1FQTA 3GKEA 1Z01A 1O7PA 2BMQA 2E4PA 4NBGD 1VCKA 2GBXA 3C0DA 5HL4A 3VMHD 2A06E 2DE5D 1BCCE 2YVJB 4HM4A 2XSHA 2HMMA 1SQQE 4PD4E 1NTZE 5AEWA 1Z02A 3N0QA 2NUKA 2IBZE 4NBHD 2ZYLA 4NBFA 5KKZC 1NDOA 4EMJB 5CXMA 3GZXA 1G8JB 3FOUA 2QJPC 2QPZA 2B24A 4HJLA 4AIVA 2NVEA 3GL2A 3AZCA 4HM6A 3GTSA 4OGQD 4QUQA 1O7HA 1UUVA 2B1XA 2DE5A 1O7NA 4NBFD 1Z03A 2YFIA 1WQLA 2YFLA 4NBEA 3L73E 4HKVA 4P1CH 4NBHA 3L75E 3L70E 4NB9A 1L0NE 3CX5E 1NTME 4H0LD 4P1BH 3D89A 2BCCE 3VMID 5KLVE 4NBED 3L72E 1O7WA 3GB4A 1SQVE 4NB8A 4QUPA 1O7MA 4NB9D 4QURA 2E76D 3VCPA 1P84E 1BE3E 4AAYB 1PP9E 1SQXE 4PV1D 2XSOA 4QDFB 2HMOA 2NWFA 4QDDA 4HM7A 1PPJE 4NBBD 4QDFA 3L74E 1RIEA 3H1KE 4NBCD 1Q90C 4NB8D 1NTKE 1EG9A 3VMIA 4HM0A 1NU1E 2NVFA 2ZT9D 2JZAA 5KLIC 4NBAA 4U3FE 4QDCA 2D2CD 2YIUC 2QJKC 1KB9E 3EQQA 3VMGA 3TGUE 2NUMA 1VM9A 2HMKA 4NBBA 3H1IE 4HM8A 2I7FA 5BOKA 4NBCA 1UUWA 4H44D 4NBAD 2Q3WA 1JM1A 3GCEA 4HM3A 1VF5D 3GOBA 1SQBE 3GTEA 3DQYA 3GZYA 2BMOA 1KYOE 3GKQA 1ZRTE 2HMLA 3VMGD 2HMNA 2BMRA 1G8KB 1ULIA 2FYUE 3H1JE 3BCCE 2HMJA 2DE6D 2E4QA 2E75D 3CWBE 3GL0A 2XRXA 3EN1A 4NBDD 3H1HE 2DE7D 4HM1A 4QCKA 4HM5A 3L71E 1ULJA 4H13D 3H1LE 2CKFA 2GBWA 2FYNC 1EZVE
chains in the Genus database with same CATH topology
1SJGA 1L0LE 3GCFA 2NVGA 2DE6A 5AEUA 2YFJA 2E74D 4NBGA 2XR8A 2JO6A 1RFSA 4NBDA 3VMHA 2DE7A 1O7GA 4HM2A 3VCAA 1WW9A 3CXHE 1NYKA 2QJYC 1SQPE 1FQTA 3GKEA 1Z01A 1O7PA 2BMQA 2E4PA 4NBGD 1VCKA 2GBXA 3C0DA 5HL4A 3VMHD 2A06E 2DE5D 1BCCE 2YVJB 4HM4A 2XSHA 2HMMA 1SQQE 4PD4E 1NTZE 5AEWA 1Z02A 3N0QA 2NUKA 2IBZE 4NBHD 2ZYLA 4NBFA 5KKZC 1NDOA 4EMJB 5CXMA 3GZXA 1G8JB 3FOUA 2QJPC 2QPZA 2B24A 4HJLA 4AIVA 2NVEA 3GL2A 3AZCA 4HM6A 3GTSA 4OGQD 4QUQA 1O7HA 1UUVA 2B1XA 2DE5A 1O7NA 4NBFD 1Z03A 2YFIA 1WQLA 2YFLA 4NBEA 3L73E 4HKVA 4P1CH 4NBHA 3L75E 3L70E 4NB9A 1L0NE 3CX5E 1NTME 4H0LD 4P1BH 3D89A 2BCCE 3VMID 5KLVE 4NBED 3L72E 1O7WA 3GB4A 1SQVE 4NB8A 4QUPA 1O7MA 4NB9D 4QURA 2E76D 3VCPA 1P84E 1BE3E 4AAYB 1PP9E 1SQXE 4PV1D 2XSOA 4QDFB 2HMOA 2NWFA 4QDDA 4HM7A 1PPJE 4NBBD 4QDFA 3L74E 1RIEA 3H1KE 4NBCD 1Q90C 4NB8D 1NTKE 1EG9A 3VMIA 4HM0A 1NU1E 2NVFA 2ZT9D 2JZAA 5KLIC 4NBAA 4U3FE 4QDCA 2D2CD 2YIUC 2QJKC 1KB9E 3EQQA 3VMGA 3TGUE 2NUMA 1VM9A 2HMKA 4NBBA 3H1IE 4HM8A 2I7FA 5BOKA 4NBCA 1UUWA 4H44D 4NBAD 2Q3WA 1JM1A 3GCEA 4HM3A 1VF5D 3GOBA 1SQBE 3GTEA 3DQYA 3GZYA 2BMOA 1KYOE 3GKQA 1ZRTE 2HMLA 3VMGD 2HMNA 2BMRA 1G8KB 1ULIA 2FYUE 3H1JE 3BCCE 2HMJA 2DE6D 2E4QA 2E75D 3CWBE 3GL0A 2XRXA 3EN1A 4NBDD 3H1HE 2DE7D 4HM1A 4QCKA 4HM5A 3L71E 1ULJA 4H13D 3H1LE 2CKFA 2GBWA 2FYNC 1EZVE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SJG A;  1L0L E;  3GCF A;  2NVG A;  2DE6 A;  5AEU A;  2YFJ A;  2E74 D;  4NBG A;  2XR8 A;  2JO6 A;  1RFS A;  4NBD A;  3VMH A;  2DE7 A;  1O7G A;  4HM2 A;  3VCA A;  1WW9 A;  3CXH E;  1NYK A;  2QJY C;  1SQP E;  1FQT A;  3GKE A;  1Z01 A;  1O7P A;  2BMQ A;  2E4P A;  4NBG D;  1VCK A;  2GBX A;  3C0D A;  5HL4 A;  3VMH D;  2A06 E;  2DE5 D;  1BCC E;  2YVJ B;  4HM4 A;  2XSH A;  2HMM A;  1SQQ E;  4PD4 E;  1NTZ E;  5AEW A;  1Z02 A;  3N0Q A;  2NUK A;  2IBZ E;  4NBH D;  2ZYL A;  4NBF A;  5KKZ C;  1NDO A;  4EMJ B;  5CXM A;  3GZX A;  1G8J B;  3FOU A;  2QJP C;  2QPZ A;  2B24 A;  4HJL A;  4AIV A;  2NVE A;  3GL2 A;  3AZC A;  4HM6 A;  3GTS A;  4OGQ D;  4QUQ A;  1O7H A;  1UUV A;  2B1X A;  2DE5 A;  1O7N A;  4NBF D;  1Z03 A;  2YFI A;  1WQL A;  2YFL A;  4NBE A;  3L73 E;  4HKV A;  4P1C H;  4NBH A;  3L75 E;  3L70 E;  4NB9 A;  1L0N E;  3CX5 E;  1NTM E;  4H0L D;  4P1B H;  3D89 A;  2BCC E;  3VMI D;  5KLV E;  4NBE D;  3L72 E;  1O7W A;  3GB4 A;  1SQV E;  4NB8 A;  4QUP A;  1O7M A;  4NB9 D;  4QUR A;  2E76 D;  3VCP A;  1P84 E;  1BE3 E;  4AAY B;  1PP9 E;  1SQX E;  4PV1 D;  2XSO A;  4QDF B;  2HMO A;  2NWF A;  4QDD A;  4HM7 A;  1PPJ E;  4NBB D;  4QDF A;  3L74 E;  1RIE A;  3H1K E;  4NBC D;  1Q90 C;  4NB8 D;  1NTK E;  1EG9 A;  3VMI A;  4HM0 A;  1NU1 E;  2NVF A;  2ZT9 D;  2JZA A;  5KLI C;  4NBA A;  4U3F E;  4QDC A;  2D2C D;  2YIU C;  2QJK C;  1KB9 E;  3EQQ A;  3VMG A;  3TGU E;  2NUM A;  1VM9 A;  2HMK A;  4NBB A;  3H1I E;  4HM8 A;  2I7F A;  5BOK A;  4NBC A;  1UUW A;  4H44 D;  4NBA D;  2Q3W A;  1JM1 A;  3GCE A;  4HM3 A;  1VF5 D;  3GOB A;  1SQB E;  3GTE A;  3DQY A;  3GZY A;  2BMO A;  1KYO E;  3GKQ A;  1ZRT E;  2HML A;  3VMG D;  2HMN A;  2BMR A;  1G8K B;  1ULI A;  2FYU E;  3H1J E;  3BCC E;  2HMJ A;  2DE6 D;  2E4Q A;  2E75 D;  3CWB E;  3GL0 A;  2XRX A;  3EN1 A;  4NBD D;  3H1H E;  2DE7 D;  4HM1 A;  4QCK A;  4HM5 A;  3L71 E;  1ULJ A;  4H13 D;  3H1L E;  2CKF A;  2GBW A;  2FYN C;  1EZV E; 
#chains in the Genus database with same CATH topology
 1SJG A;  1L0L E;  3GCF A;  2NVG A;  2DE6 A;  5AEU A;  2YFJ A;  2E74 D;  4NBG A;  2XR8 A;  2JO6 A;  1RFS A;  4NBD A;  3VMH A;  2DE7 A;  1O7G A;  4HM2 A;  3VCA A;  1WW9 A;  3CXH E;  1NYK A;  2QJY C;  1SQP E;  1FQT A;  3GKE A;  1Z01 A;  1O7P A;  2BMQ A;  2E4P A;  4NBG D;  1VCK A;  2GBX A;  3C0D A;  5HL4 A;  3VMH D;  2A06 E;  2DE5 D;  1BCC E;  2YVJ B;  4HM4 A;  2XSH A;  2HMM A;  1SQQ E;  4PD4 E;  1NTZ E;  5AEW A;  1Z02 A;  3N0Q A;  2NUK A;  2IBZ E;  4NBH D;  2ZYL A;  4NBF A;  5KKZ C;  1NDO A;  4EMJ B;  5CXM A;  3GZX A;  1G8J B;  3FOU A;  2QJP C;  2QPZ A;  2B24 A;  4HJL A;  4AIV A;  2NVE A;  3GL2 A;  3AZC A;  4HM6 A;  3GTS A;  4OGQ D;  4QUQ A;  1O7H A;  1UUV A;  2B1X A;  2DE5 A;  1O7N A;  4NBF D;  1Z03 A;  2YFI A;  1WQL A;  2YFL A;  4NBE A;  3L73 E;  4HKV A;  4P1C H;  4NBH A;  3L75 E;  3L70 E;  4NB9 A;  1L0N E;  3CX5 E;  1NTM E;  4H0L D;  4P1B H;  3D89 A;  2BCC E;  3VMI D;  5KLV E;  4NBE D;  3L72 E;  1O7W A;  3GB4 A;  1SQV E;  4NB8 A;  4QUP A;  1O7M A;  4NB9 D;  4QUR A;  2E76 D;  3VCP A;  1P84 E;  1BE3 E;  4AAY B;  1PP9 E;  1SQX E;  4PV1 D;  2XSO A;  4QDF B;  2HMO A;  2NWF A;  4QDD A;  4HM7 A;  1PPJ E;  4NBB D;  4QDF A;  3L74 E;  1RIE A;  3H1K E;  4NBC D;  1Q90 C;  4NB8 D;  1NTK E;  1EG9 A;  3VMI A;  4HM0 A;  1NU1 E;  2NVF A;  2ZT9 D;  2JZA A;  5KLI C;  4NBA A;  4U3F E;  4QDC A;  2D2C D;  2YIU C;  2QJK C;  1KB9 E;  3EQQ A;  3VMG A;  3TGU E;  2NUM A;  1VM9 A;  2HMK A;  4NBB A;  3H1I E;  4HM8 A;  2I7F A;  5BOK A;  4NBC A;  1UUW A;  4H44 D;  4NBA D;  2Q3W A;  1JM1 A;  3GCE A;  4HM3 A;  1VF5 D;  3GOB A;  1SQB E;  3GTE A;  3DQY A;  3GZY A;  2BMO A;  1KYO E;  3GKQ A;  1ZRT E;  2HML A;  3VMG D;  2HMN A;  2BMR A;  1G8K B;  1ULI A;  2FYU E;  3H1J E;  3BCC E;  2HMJ A;  2DE6 D;  2E4Q A;  2E75 D;  3CWB E;  3GL0 A;  2XRX A;  3EN1 A;  4NBD D;  3H1H E;  2DE7 D;  4HM1 A;  4QCK A;  4HM5 A;  3L71 E;  1ULJ A;  4H13 D;  3H1L E;  2CKF A;  2GBW A;  2FYN C;  1EZV E; 
#chains in the Genus database with same CATH homology
 1SJG A;  1L0L E;  3GCF A;  2NVG A;  2DE6 A;  5AEU A;  2YFJ A;  2E74 D;  4NBG A;  2XR8 A;  2JO6 A;  1RFS A;  4NBD A;  3VMH A;  2DE7 A;  1O7G A;  4HM2 A;  3VCA A;  1WW9 A;  3CXH E;  1NYK A;  2QJY C;  1SQP E;  1FQT A;  3GKE A;  1Z01 A;  1O7P A;  2BMQ A;  2E4P A;  4NBG D;  1VCK A;  2GBX A;  3C0D A;  5HL4 A;  3VMH D;  2A06 E;  2DE5 D;  1BCC E;  2YVJ B;  4HM4 A;  2XSH A;  2HMM A;  1SQQ E;  4PD4 E;  1NTZ E;  5AEW A;  1Z02 A;  3N0Q A;  2NUK A;  2IBZ E;  4NBH D;  2ZYL A;  4NBF A;  5KKZ C;  1NDO A;  4EMJ B;  5CXM A;  3GZX A;  1G8J B;  3FOU A;  2QJP C;  2QPZ A;  2B24 A;  4HJL A;  4AIV A;  2NVE A;  3GL2 A;  3AZC A;  4HM6 A;  3GTS A;  4OGQ D;  4QUQ A;  1O7H A;  1UUV A;  2B1X A;  2DE5 A;  1O7N A;  4NBF D;  1Z03 A;  2YFI A;  1WQL A;  2YFL A;  4NBE A;  3L73 E;  4HKV A;  4P1C H;  4NBH A;  3L75 E;  3L70 E;  4NB9 A;  1L0N E;  3CX5 E;  1NTM E;  4H0L D;  4P1B H;  3D89 A;  2BCC E;  3VMI D;  5KLV E;  4NBE D;  3L72 E;  1O7W A;  3GB4 A;  1SQV E;  4NB8 A;  4QUP A;  1O7M A;  4NB9 D;  4QUR A;  2E76 D;  3VCP A;  1P84 E;  1BE3 E;  4AAY B;  1PP9 E;  1SQX E;  4PV1 D;  2XSO A;  4QDF B;  2HMO A;  2NWF A;  4QDD A;  4HM7 A;  1PPJ E;  4NBB D;  4QDF A;  3L74 E;  1RIE A;  3H1K E;  4NBC D;  1Q90 C;  4NB8 D;  1NTK E;  1EG9 A;  3VMI A;  4HM0 A;  1NU1 E;  2NVF A;  2ZT9 D;  2JZA A;  5KLI C;  4NBA A;  4U3F E;  4QDC A;  2D2C D;  2YIU C;  2QJK C;  1KB9 E;  3EQQ A;  3VMG A;  3TGU E;  2NUM A;  1VM9 A;  2HMK A;  4NBB A;  3H1I E;  4HM8 A;  2I7F A;  5BOK A;  4NBC A;  1UUW A;  4H44 D;  4NBA D;  2Q3W A;  1JM1 A;  3GCE A;  4HM3 A;  1VF5 D;  3GOB A;  1SQB E;  3GTE A;  3DQY A;  3GZY A;  2BMO A;  1KYO E;  3GKQ A;  1ZRT E;  2HML A;  3VMG D;  2HMN A;  2BMR A;  1G8K B;  1ULI A;  2FYU E;  3H1J E;  3BCC E;  2HMJ A;  2DE6 D;  2E4Q A;  2E75 D;  3CWB E;  3GL0 A;  2XRX A;  3EN1 A;  4NBD D;  3H1H E;  2DE7 D;  4HM1 A;  4QCK A;  4HM5 A;  3L71 E;  1ULJ A;  4H13 D;  3H1L E;  2CKF A;  2GBW A;  2FYN C;  1EZV E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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