1NDOA

Naphthalene 1,2-dioxygenase
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase.
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Non-heme iron dioxygenase
molecule keywords NAPHTHALENE 1,2-DIOXYGENASE
total genus 160
structure length 447
sequence length 447
chains with identical sequence C, E
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 1998-01-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1ndoA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1ndoA01
2DE6D 3GL2A 4QUQA 4AIVA 1O7GA 2FYNC 4HM1A 1WW9A 4HM2A 3L70E 1Z02A 4NB9A 3L71E 1SQPE 1P84E 4HM8A 2DE5A 4QDCA 1G8JB 2B24A 4NBCD 2BMQA 3H1LE 1VF5D 1O7WA 2QJYC 3C0DA 3L72E 3VMHA 1G8KB 4P1BH 3GL0A 4NBDD 4NBDA 1UUWA 1NTME 1BCCE 1VM9A 4NBED 2HMMA 2NVEA 2DE5D 3GCFA 2B1XA 5HL4A 2BCCE 3VMHD 3TGUE 1SQXE 2E76D 3DQYA 1WQLA 1O7PA 1Q90C 1L0LE 2YVJB 3FOUA 3BCCE 3H1HE 2NUMA 4HKVA 2QJPC 4HM0A 3H1JE 2HMKA 1ULIA 4EMJB 3CX5E 4NBCA 1Z03A 2QPZA 2FYUE 2HMOA 4H13D 2JO6A 3GOBA 4QDDA 2E4PA 1VCKA 2Q3WA 2YFJA 3N0QA 4HM3A 2HMJA 2XRXA 1O7MA 2DE7A 2ZYLA 4NB8D 2YFLA 3VCPA 4H0LD 1KB9E 1SQQE 3GKQA 4NBFD 1NTZE 1ZRTE 2NWFA 3AZCA 2GBWA 2ZT9D 2I7FA 2HMNA 4NB9D 1ULJA 4AAYB 4NBHD 4HM6A 3L74E 4PD4E 5AEWA 3GZXA 3L73E 1UUVA 3L75E 4HM4A 3VMIA 3GTEA 2JZAA 2NUKA 3D89A 1JM1A 3GKEA 4HJLA 2D2CD 1FQTA 4QDFA 4P1CH 1O7HA 5KLVE 1RFSA 5BOKA 4QUPA 1KYOE 1PPJE 4NBEA 2E75D 5KLIC 1NTKE 1L0NE 4NB8A 2DE7D 1Z01A 4NBAA 2YIUC 3VCAA 2A06E 2BMRA 4NBGD 2GBXA 4QDFB 5CXMA 3VMGD 1NDOA 3CWBE 3GB4A 3GCEA 1O7NA 3GTSA 4HM7A 1BE3E 2IBZE 1RIEA 2NVGA 1EG9A 3H1IE 4HM5A 2CKFA 2DE6A 4NBGA 4PV1D 1NU1E 1SQBE 4NBAD 4H44D 3VMID 3CXHE 4NBFA 2QJKC 2NVFA 2BMOA 3VMGA 4QCKA 4NBHA 4NBBD 4QURA 1SJGA 5AEUA 2XSOA 5KKZC 3H1KE 1NYKA 3GZYA 4OGQD 3EQQA 2HMLA 1EZVE 4U3FE 2E74D 1SQVE 2YFIA 2E4QA 3EN1A 2XR8A 1PP9E 4NBBA 2XSHA
chains in the Genus database with same CATH superfamily
2DE6D 3GL2A 4QUQA 4AIVA 1O7GA 2FYNC 4HM1A 1WW9A 4HM2A 3L70E 1Z02A 4NB9A 3L71E 1SQPE 1P84E 4HM8A 2DE5A 4QDCA 1G8JB 2B24A 4NBCD 2BMQA 3H1LE 1VF5D 1O7WA 2QJYC 3C0DA 3L72E 3VMHA 1G8KB 4P1BH 3GL0A 4NBDD 4NBDA 1UUWA 1NTME 1BCCE 1VM9A 4NBED 2HMMA 2NVEA 2DE5D 3GCFA 2B1XA 5HL4A 2BCCE 3VMHD 3TGUE 1SQXE 2E76D 3DQYA 1WQLA 1O7PA 1Q90C 1L0LE 2YVJB 3FOUA 3BCCE 3H1HE 2NUMA 4HKVA 2QJPC 4HM0A 3H1JE 2HMKA 1ULIA 4EMJB 3CX5E 4NBCA 1Z03A 2QPZA 2FYUE 2HMOA 4H13D 2JO6A 3GOBA 4QDDA 2E4PA 1VCKA 2Q3WA 2YFJA 3N0QA 4HM3A 2HMJA 2XRXA 1O7MA 2DE7A 2ZYLA 4NB8D 2YFLA 3VCPA 4H0LD 1KB9E 1SQQE 3GKQA 4NBFD 1NTZE 1ZRTE 2NWFA 3AZCA 2GBWA 2ZT9D 2I7FA 2HMNA 4NB9D 1ULJA 4AAYB 4NBHD 4HM6A 3L74E 4PD4E 5AEWA 3GZXA 3L73E 1UUVA 3L75E 4HM4A 3VMIA 3GTEA 2JZAA 2NUKA 3D89A 1JM1A 3GKEA 4HJLA 2D2CD 1FQTA 4QDFA 4P1CH 1O7HA 5KLVE 1RFSA 5BOKA 4QUPA 1KYOE 1PPJE 4NBEA 2E75D 5KLIC 1NTKE 1L0NE 4NB8A 2DE7D 1Z01A 4NBAA 2YIUC 3VCAA 2A06E 2BMRA 4NBGD 2GBXA 4QDFB 5CXMA 3VMGD 1NDOA 3CWBE 3GB4A 3GCEA 1O7NA 3GTSA 4HM7A 1BE3E 2IBZE 1RIEA 2NVGA 1EG9A 3H1IE 4HM5A 2CKFA 2DE6A 4NBGA 4PV1D 1NU1E 1SQBE 4NBAD 4H44D 3VMID 3CXHE 4NBFA 2QJKC 2NVFA 2BMOA 3VMGA 4QCKA 4NBHA 4NBBD 4QURA 1SJGA 5AEUA 2XSOA 5KKZC 3H1KE 1NYKA 3GZYA 4OGQD 3EQQA 2HMLA 1EZVE 4U3FE 2E74D 1SQVE 2YFIA 2E4QA 3EN1A 2XR8A 1PP9E 4NBBA 2XSHA
chains in the Genus database with same CATH topology
2DE6D 3GL2A 4QUQA 4AIVA 1O7GA 2FYNC 4HM1A 1WW9A 4HM2A 3L70E 1Z02A 4NB9A 3L71E 1SQPE 1P84E 4HM8A 2DE5A 4QDCA 1G8JB 2B24A 4NBCD 2BMQA 3H1LE 1VF5D 1O7WA 2QJYC 3C0DA 3L72E 3VMHA 1G8KB 4P1BH 3GL0A 4NBDD 4NBDA 1UUWA 1NTME 1BCCE 1VM9A 4NBED 2HMMA 2NVEA 2DE5D 3GCFA 2B1XA 5HL4A 2BCCE 3VMHD 3TGUE 1SQXE 2E76D 3DQYA 1WQLA 1O7PA 1Q90C 1L0LE 2YVJB 3FOUA 3BCCE 3H1HE 2NUMA 4HKVA 2QJPC 4HM0A 3H1JE 2HMKA 1ULIA 4EMJB 3CX5E 4NBCA 1Z03A 2QPZA 2FYUE 2HMOA 4H13D 2JO6A 3GOBA 4QDDA 2E4PA 1VCKA 2Q3WA 2YFJA 3N0QA 4HM3A 2HMJA 2XRXA 1O7MA 2DE7A 2ZYLA 4NB8D 2YFLA 3VCPA 4H0LD 1KB9E 1SQQE 3GKQA 4NBFD 1NTZE 1ZRTE 2NWFA 3AZCA 2GBWA 2ZT9D 2I7FA 2HMNA 4NB9D 1ULJA 4AAYB 4NBHD 4HM6A 3L74E 4PD4E 5AEWA 3GZXA 3L73E 1UUVA 3L75E 4HM4A 3VMIA 3GTEA 2JZAA 2NUKA 3D89A 1JM1A 3GKEA 4HJLA 2D2CD 1FQTA 4QDFA 4P1CH 1O7HA 5KLVE 1RFSA 5BOKA 4QUPA 1KYOE 1PPJE 4NBEA 2E75D 5KLIC 1NTKE 1L0NE 4NB8A 2DE7D 1Z01A 4NBAA 2YIUC 3VCAA 2A06E 2BMRA 4NBGD 2GBXA 4QDFB 5CXMA 3VMGD 1NDOA 3CWBE 3GB4A 3GCEA 1O7NA 3GTSA 4HM7A 1BE3E 2IBZE 1RIEA 2NVGA 1EG9A 3H1IE 4HM5A 2CKFA 2DE6A 4NBGA 4PV1D 1NU1E 1SQBE 4NBAD 4H44D 3VMID 3CXHE 4NBFA 2QJKC 2NVFA 2BMOA 3VMGA 4QCKA 4NBHA 4NBBD 4QURA 1SJGA 5AEUA 2XSOA 5KKZC 3H1KE 1NYKA 3GZYA 4OGQD 3EQQA 2HMLA 1EZVE 4U3FE 2E74D 1SQVE 2YFIA 2E4QA 3EN1A 2XR8A 1PP9E 4NBBA 2XSHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DE6 D;  3GL2 A;  4QUQ A;  4AIV A;  1O7G A;  2FYN C;  4HM1 A;  1WW9 A;  4HM2 A;  3L70 E;  1Z02 A;  4NB9 A;  3L71 E;  1SQP E;  1P84 E;  4HM8 A;  2DE5 A;  4QDC A;  1G8J B;  2B24 A;  4NBC D;  2BMQ A;  3H1L E;  1VF5 D;  1O7W A;  2QJY C;  3C0D A;  3L72 E;  3VMH A;  1G8K B;  4P1B H;  3GL0 A;  4NBD D;  4NBD A;  1UUW A;  1NTM E;  1BCC E;  1VM9 A;  4NBE D;  2HMM A;  2NVE A;  2DE5 D;  3GCF A;  2B1X A;  5HL4 A;  2BCC E;  3VMH D;  3TGU E;  1SQX E;  2E76 D;  3DQY A;  1WQL A;  1O7P A;  1Q90 C;  1L0L E;  2YVJ B;  3FOU A;  3BCC E;  3H1H E;  2NUM A;  4HKV A;  2QJP C;  4HM0 A;  3H1J E;  2HMK A;  1ULI A;  4EMJ B;  3CX5 E;  4NBC A;  1Z03 A;  2QPZ A;  2FYU E;  2HMO A;  4H13 D;  2JO6 A;  3GOB A;  4QDD A;  2E4P A;  1VCK A;  2Q3W A;  2YFJ A;  3N0Q A;  4HM3 A;  2HMJ A;  2XRX A;  1O7M A;  2DE7 A;  2ZYL A;  4NB8 D;  2YFL A;  3VCP A;  4H0L D;  1KB9 E;  1SQQ E;  3GKQ A;  4NBF D;  1NTZ E;  1ZRT E;  2NWF A;  3AZC A;  2GBW A;  2ZT9 D;  2I7F A;  2HMN A;  4NB9 D;  1ULJ A;  4AAY B;  4NBH D;  4HM6 A;  3L74 E;  4PD4 E;  5AEW A;  3GZX A;  3L73 E;  1UUV A;  3L75 E;  4HM4 A;  3VMI A;  3GTE A;  2JZA A;  2NUK A;  3D89 A;  1JM1 A;  3GKE A;  4HJL A;  2D2C D;  1FQT A;  4QDF A;  4P1C H;  1O7H A;  5KLV E;  1RFS A;  5BOK A;  4QUP A;  1KYO E;  1PPJ E;  4NBE A;  2E75 D;  5KLI C;  1NTK E;  1L0N E;  4NB8 A;  2DE7 D;  1Z01 A;  4NBA A;  2YIU C;  3VCA A;  2A06 E;  2BMR A;  4NBG D;  2GBX A;  4QDF B;  5CXM A;  3VMG D;  1NDO A;  3CWB E;  3GB4 A;  3GCE A;  1O7N A;  3GTS A;  4HM7 A;  1BE3 E;  2IBZ E;  1RIE A;  2NVG A;  1EG9 A;  3H1I E;  4HM5 A;  2CKF A;  2DE6 A;  4NBG A;  4PV1 D;  1NU1 E;  1SQB E;  4NBA D;  4H44 D;  3VMI D;  3CXH E;  4NBF A;  2QJK C;  2NVF A;  2BMO A;  3VMG A;  4QCK A;  4NBH A;  4NBB D;  4QUR A;  1SJG A;  5AEU A;  2XSO A;  5KKZ C;  3H1K E;  1NYK A;  3GZY A;  4OGQ D;  3EQQ A;  2HML A;  1EZV E;  4U3F E;  2E74 D;  1SQV E;  2YFI A;  2E4Q A;  3EN1 A;  2XR8 A;  1PP9 E;  4NBB A;  2XSH A; 
#chains in the Genus database with same CATH topology
 2DE6 D;  3GL2 A;  4QUQ A;  4AIV A;  1O7G A;  2FYN C;  4HM1 A;  1WW9 A;  4HM2 A;  3L70 E;  1Z02 A;  4NB9 A;  3L71 E;  1SQP E;  1P84 E;  4HM8 A;  2DE5 A;  4QDC A;  1G8J B;  2B24 A;  4NBC D;  2BMQ A;  3H1L E;  1VF5 D;  1O7W A;  2QJY C;  3C0D A;  3L72 E;  3VMH A;  1G8K B;  4P1B H;  3GL0 A;  4NBD D;  4NBD A;  1UUW A;  1NTM E;  1BCC E;  1VM9 A;  4NBE D;  2HMM A;  2NVE A;  2DE5 D;  3GCF A;  2B1X A;  5HL4 A;  2BCC E;  3VMH D;  3TGU E;  1SQX E;  2E76 D;  3DQY A;  1WQL A;  1O7P A;  1Q90 C;  1L0L E;  2YVJ B;  3FOU A;  3BCC E;  3H1H E;  2NUM A;  4HKV A;  2QJP C;  4HM0 A;  3H1J E;  2HMK A;  1ULI A;  4EMJ B;  3CX5 E;  4NBC A;  1Z03 A;  2QPZ A;  2FYU E;  2HMO A;  4H13 D;  2JO6 A;  3GOB A;  4QDD A;  2E4P A;  1VCK A;  2Q3W A;  2YFJ A;  3N0Q A;  4HM3 A;  2HMJ A;  2XRX A;  1O7M A;  2DE7 A;  2ZYL A;  4NB8 D;  2YFL A;  3VCP A;  4H0L D;  1KB9 E;  1SQQ E;  3GKQ A;  4NBF D;  1NTZ E;  1ZRT E;  2NWF A;  3AZC A;  2GBW A;  2ZT9 D;  2I7F A;  2HMN A;  4NB9 D;  1ULJ A;  4AAY B;  4NBH D;  4HM6 A;  3L74 E;  4PD4 E;  5AEW A;  3GZX A;  3L73 E;  1UUV A;  3L75 E;  4HM4 A;  3VMI A;  3GTE A;  2JZA A;  2NUK A;  3D89 A;  1JM1 A;  3GKE A;  4HJL A;  2D2C D;  1FQT A;  4QDF A;  4P1C H;  1O7H A;  5KLV E;  1RFS A;  5BOK A;  4QUP A;  1KYO E;  1PPJ E;  4NBE A;  2E75 D;  5KLI C;  1NTK E;  1L0N E;  4NB8 A;  2DE7 D;  1Z01 A;  4NBA A;  2YIU C;  3VCA A;  2A06 E;  2BMR A;  4NBG D;  2GBX A;  4QDF B;  5CXM A;  3VMG D;  1NDO A;  3CWB E;  3GB4 A;  3GCE A;  1O7N A;  3GTS A;  4HM7 A;  1BE3 E;  2IBZ E;  1RIE A;  2NVG A;  1EG9 A;  3H1I E;  4HM5 A;  2CKF A;  2DE6 A;  4NBG A;  4PV1 D;  1NU1 E;  1SQB E;  4NBA D;  4H44 D;  3VMI D;  3CXH E;  4NBF A;  2QJK C;  2NVF A;  2BMO A;  3VMG A;  4QCK A;  4NBH A;  4NBB D;  4QUR A;  1SJG A;  5AEU A;  2XSO A;  5KKZ C;  3H1K E;  1NYK A;  3GZY A;  4OGQ D;  3EQQ A;  2HML A;  1EZV E;  4U3F E;  2E74 D;  1SQV E;  2YFI A;  2E4Q A;  3EN1 A;  2XR8 A;  1PP9 E;  4NBB A;  2XSH A; 
#chains in the Genus database with same CATH homology
 2DE6 D;  3GL2 A;  4QUQ A;  4AIV A;  1O7G A;  2FYN C;  4HM1 A;  1WW9 A;  4HM2 A;  3L70 E;  1Z02 A;  4NB9 A;  3L71 E;  1SQP E;  1P84 E;  4HM8 A;  2DE5 A;  4QDC A;  1G8J B;  2B24 A;  4NBC D;  2BMQ A;  3H1L E;  1VF5 D;  1O7W A;  2QJY C;  3C0D A;  3L72 E;  3VMH A;  1G8K B;  4P1B H;  3GL0 A;  4NBD D;  4NBD A;  1UUW A;  1NTM E;  1BCC E;  1VM9 A;  4NBE D;  2HMM A;  2NVE A;  2DE5 D;  3GCF A;  2B1X A;  5HL4 A;  2BCC E;  3VMH D;  3TGU E;  1SQX E;  2E76 D;  3DQY A;  1WQL A;  1O7P A;  1Q90 C;  1L0L E;  2YVJ B;  3FOU A;  3BCC E;  3H1H E;  2NUM A;  4HKV A;  2QJP C;  4HM0 A;  3H1J E;  2HMK A;  1ULI A;  4EMJ B;  3CX5 E;  4NBC A;  1Z03 A;  2QPZ A;  2FYU E;  2HMO A;  4H13 D;  2JO6 A;  3GOB A;  4QDD A;  2E4P A;  1VCK A;  2Q3W A;  2YFJ A;  3N0Q A;  4HM3 A;  2HMJ A;  2XRX A;  1O7M A;  2DE7 A;  2ZYL A;  4NB8 D;  2YFL A;  3VCP A;  4H0L D;  1KB9 E;  1SQQ E;  3GKQ A;  4NBF D;  1NTZ E;  1ZRT E;  2NWF A;  3AZC A;  2GBW A;  2ZT9 D;  2I7F A;  2HMN A;  4NB9 D;  1ULJ A;  4AAY B;  4NBH D;  4HM6 A;  3L74 E;  4PD4 E;  5AEW A;  3GZX A;  3L73 E;  1UUV A;  3L75 E;  4HM4 A;  3VMI A;  3GTE A;  2JZA A;  2NUK A;  3D89 A;  1JM1 A;  3GKE A;  4HJL A;  2D2C D;  1FQT A;  4QDF A;  4P1C H;  1O7H A;  5KLV E;  1RFS A;  5BOK A;  4QUP A;  1KYO E;  1PPJ E;  4NBE A;  2E75 D;  5KLI C;  1NTK E;  1L0N E;  4NB8 A;  2DE7 D;  1Z01 A;  4NBA A;  2YIU C;  3VCA A;  2A06 E;  2BMR A;  4NBG D;  2GBX A;  4QDF B;  5CXM A;  3VMG D;  1NDO A;  3CWB E;  3GB4 A;  3GCE A;  1O7N A;  3GTS A;  4HM7 A;  1BE3 E;  2IBZ E;  1RIE A;  2NVG A;  1EG9 A;  3H1I E;  4HM5 A;  2CKF A;  2DE6 A;  4NBG A;  4PV1 D;  1NU1 E;  1SQB E;  4NBA D;  4H44 D;  3VMI D;  3CXH E;  4NBF A;  2QJK C;  2NVF A;  2BMO A;  3VMG A;  4QCK A;  4NBH A;  4NBB D;  4QUR A;  1SJG A;  5AEU A;  2XSO A;  5KKZ C;  3H1K E;  1NYK A;  3GZY A;  4OGQ D;  3EQQ A;  2HML A;  1EZV E;  4U3F E;  2E74 D;  1SQV E;  2YFI A;  2E4Q A;  3EN1 A;  2XR8 A;  1PP9 E;  4NBB A;  2XSH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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