1NDOA

Naphthalene 1,2-dioxygenase
Total Genus 160
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Non-heme iron dioxygenase
molecule keywords NAPHTHALENE 1,2-DIOXYGENASE
publication title Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase.
pubmed doi rcsb
source organism Pseudomonas putida
total genus 160
structure length 447
sequence length 447
chains with identical sequence C, E
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 1998-01-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1ndoA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1ndoA01
2QJPC 4NBHD 2ZT9D 2YFIA 3GOBA 3DQYA 4H0LD 1Z01A 2DE5A 3H1HE 2E4QA 4QDDA 3L73E 4NBFD 3GZXA 4QDCA 1UUWA 1WQLA 1ULJA 4NBDA 2E76D 2HMJA 3VCPA 4H44D 3C0DA 3VMGD 3GCFA 4NBAD 2Q3WA 1WW9A 1KYOE 3VMID 3VMHD 1SQPE 2GBWA 2XRXA 4U3FE 4H13D 3H1JE 4HKVA 4NB9A 1ZRTE 1L0NE 4HM2A 4QUQA 1SQBE 5BOKA 1NTME 4AAYB 2HMLA 2DE6A 1EG9A 4HM6A 4HJLA 2QPZA 1PPJE 2DE7D 3H1KE 3EQQA 3AZCA 4PD4E 2QJYC 4NBHA 2NUMA 2JZAA 1Q90C 4P1CH 1NU1E 1O7HA 2BMRA 3GTEA 3EN1A 3D89A 2NVGA 4NB8D 1Z02A 1SQQE 2YFJA 2B24A 3GL0A 1UUVA 4OGQD 4NBGA 5AEWA 1EZVE 3FOUA 2DE5D 3L74E 1RIEA 3L75E 4NBBA 4QURA 1ULIA 2JO6A 2BCCE 4HM7A 1PP9E 2XSOA 2YFLA 3CXHE 4NBDD 3L72E 4NBEA 4HM8A 4EMJB 1Z03A 1VCKA 4NBCA 1O7NA 4HM1A 2HMKA 4HM0A 3H1LE 1P84E 4PV1D 5CXMA 1SQVE 1O7PA 2NWFA 2BMQA 4QUPA 2XSHA 2NVEA 5KLIC 2XR8A 4QDFA 1JM1A 2CKFA 3GCEA 2E4PA 3TGUE 4NB9D 4NBFA 2IBZE 2HMOA 2YIUC 2A06E 2I7FA 1VF5D 2QJKC 2DE6D 3VMGA 4NBCD 3H1IE 4HM3A 4NBAA 1O7WA 4AIVA 3CWBE 1RFSA 3VMIA 3VMHA 3GL2A 2D2CD 2ZYLA 1KB9E 1VM9A 3CX5E 1NYKA 4HM5A 5AEUA 5KKZC 2YVJB 3GB4A 1BCCE 1NTKE 3L71E 4QCKA 1BE3E 2GBXA 3GKQA 1FQTA 1O7GA 3BCCE 2HMMA 2B1XA 1G8JB 3GKEA 3GTSA 3N0QA 5KLVE 1L0LE 2DE7A 3GZYA 4NBGD 2FYUE 3L70E 1NTZE 2HMNA 4NBBD 2NVFA 2E75D 2E74D 4QDFB 2NUKA 1NDOA 2FYNC 4HM4A 1G8KB 1O7MA 1SJGA 3VCAA 4NBED 4P1BH 1SQXE 4NB8A 2BMOA 5HL4A
chains in the Genus database with same CATH superfamily
2QJPC 4NBHD 2ZT9D 2YFIA 3GOBA 3DQYA 4H0LD 1Z01A 2DE5A 3H1HE 2E4QA 4QDDA 3L73E 4NBFD 3GZXA 4QDCA 1UUWA 1WQLA 1ULJA 4NBDA 2E76D 2HMJA 3VCPA 4H44D 3C0DA 3VMGD 3GCFA 4NBAD 2Q3WA 1WW9A 1KYOE 3VMID 3VMHD 1SQPE 2GBWA 2XRXA 4U3FE 4H13D 3H1JE 4HKVA 4NB9A 1ZRTE 1L0NE 4HM2A 4QUQA 1SQBE 5BOKA 1NTME 4AAYB 2HMLA 2DE6A 1EG9A 4HM6A 4HJLA 2QPZA 1PPJE 2DE7D 3H1KE 3EQQA 3AZCA 4PD4E 2QJYC 4NBHA 2NUMA 2JZAA 1Q90C 4P1CH 1NU1E 1O7HA 2BMRA 3GTEA 3EN1A 3D89A 2NVGA 4NB8D 1Z02A 1SQQE 2YFJA 2B24A 3GL0A 1UUVA 4OGQD 4NBGA 5AEWA 1EZVE 3FOUA 2DE5D 3L74E 1RIEA 3L75E 4NBBA 4QURA 1ULIA 2JO6A 2BCCE 4HM7A 1PP9E 2XSOA 2YFLA 3CXHE 4NBDD 3L72E 4NBEA 4HM8A 4EMJB 1Z03A 1VCKA 4NBCA 1O7NA 4HM1A 2HMKA 4HM0A 3H1LE 1P84E 4PV1D 5CXMA 1SQVE 1O7PA 2NWFA 2BMQA 4QUPA 2XSHA 2NVEA 5KLIC 2XR8A 4QDFA 1JM1A 2CKFA 3GCEA 2E4PA 3TGUE 4NB9D 4NBFA 2IBZE 2HMOA 2YIUC 2A06E 2I7FA 1VF5D 2QJKC 2DE6D 3VMGA 4NBCD 3H1IE 4HM3A 4NBAA 1O7WA 4AIVA 3CWBE 1RFSA 3VMIA 3VMHA 3GL2A 2D2CD 2ZYLA 1KB9E 1VM9A 3CX5E 1NYKA 4HM5A 5AEUA 5KKZC 2YVJB 3GB4A 1BCCE 1NTKE 3L71E 4QCKA 1BE3E 2GBXA 3GKQA 1FQTA 1O7GA 3BCCE 2HMMA 2B1XA 1G8JB 3GKEA 3GTSA 3N0QA 5KLVE 1L0LE 2DE7A 3GZYA 4NBGD 2FYUE 3L70E 1NTZE 2HMNA 4NBBD 2NVFA 2E75D 2E74D 4QDFB 2NUKA 1NDOA 2FYNC 4HM4A 1G8KB 1O7MA 1SJGA 3VCAA 4NBED 4P1BH 1SQXE 4NB8A 2BMOA 5HL4A
chains in the Genus database with same CATH topology
2QJPC 4NBHD 2ZT9D 2YFIA 3GOBA 3DQYA 4H0LD 1Z01A 2DE5A 3H1HE 2E4QA 4QDDA 3L73E 4NBFD 3GZXA 4QDCA 1UUWA 1WQLA 1ULJA 4NBDA 2E76D 2HMJA 3VCPA 4H44D 3C0DA 3VMGD 3GCFA 4NBAD 2Q3WA 1WW9A 1KYOE 3VMID 3VMHD 1SQPE 2GBWA 2XRXA 4U3FE 4H13D 3H1JE 4HKVA 4NB9A 1ZRTE 1L0NE 4HM2A 4QUQA 1SQBE 5BOKA 1NTME 4AAYB 2HMLA 2DE6A 1EG9A 4HM6A 4HJLA 2QPZA 1PPJE 2DE7D 3H1KE 3EQQA 3AZCA 4PD4E 2QJYC 4NBHA 2NUMA 2JZAA 1Q90C 4P1CH 1NU1E 1O7HA 2BMRA 3GTEA 3EN1A 3D89A 2NVGA 4NB8D 1Z02A 1SQQE 2YFJA 2B24A 3GL0A 1UUVA 4OGQD 4NBGA 5AEWA 1EZVE 3FOUA 2DE5D 3L74E 1RIEA 3L75E 4NBBA 4QURA 1ULIA 2JO6A 2BCCE 4HM7A 1PP9E 2XSOA 2YFLA 3CXHE 4NBDD 3L72E 4NBEA 4HM8A 4EMJB 1Z03A 1VCKA 4NBCA 1O7NA 4HM1A 2HMKA 4HM0A 3H1LE 1P84E 4PV1D 5CXMA 1SQVE 1O7PA 2NWFA 2BMQA 4QUPA 2XSHA 2NVEA 5KLIC 2XR8A 4QDFA 1JM1A 2CKFA 3GCEA 2E4PA 3TGUE 4NB9D 4NBFA 2IBZE 2HMOA 2YIUC 2A06E 2I7FA 1VF5D 2QJKC 2DE6D 3VMGA 4NBCD 3H1IE 4HM3A 4NBAA 1O7WA 4AIVA 3CWBE 1RFSA 3VMIA 3VMHA 3GL2A 2D2CD 2ZYLA 1KB9E 1VM9A 3CX5E 1NYKA 4HM5A 5AEUA 5KKZC 2YVJB 3GB4A 1BCCE 1NTKE 3L71E 4QCKA 1BE3E 2GBXA 3GKQA 1FQTA 1O7GA 3BCCE 2HMMA 2B1XA 1G8JB 3GKEA 3GTSA 3N0QA 5KLVE 1L0LE 2DE7A 3GZYA 4NBGD 2FYUE 3L70E 1NTZE 2HMNA 4NBBD 2NVFA 2E75D 2E74D 4QDFB 2NUKA 1NDOA 2FYNC 4HM4A 1G8KB 1O7MA 1SJGA 3VCAA 4NBED 4P1BH 1SQXE 4NB8A 2BMOA 5HL4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QJP C;  4NBH D;  2ZT9 D;  2YFI A;  3GOB A;  3DQY A;  4H0L D;  1Z01 A;  2DE5 A;  3H1H E;  2E4Q A;  4QDD A;  3L73 E;  4NBF D;  3GZX A;  4QDC A;  1UUW A;  1WQL A;  1ULJ A;  4NBD A;  2E76 D;  2HMJ A;  3VCP A;  4H44 D;  3C0D A;  3VMG D;  3GCF A;  4NBA D;  2Q3W A;  1WW9 A;  1KYO E;  3VMI D;  3VMH D;  1SQP E;  2GBW A;  2XRX A;  4U3F E;  4H13 D;  3H1J E;  4HKV A;  4NB9 A;  1ZRT E;  1L0N E;  4HM2 A;  4QUQ A;  1SQB E;  5BOK A;  1NTM E;  4AAY B;  2HML A;  2DE6 A;  1EG9 A;  4HM6 A;  4HJL A;  2QPZ A;  1PPJ E;  2DE7 D;  3H1K E;  3EQQ A;  3AZC A;  4PD4 E;  2QJY C;  4NBH A;  2NUM A;  2JZA A;  1Q90 C;  4P1C H;  1NU1 E;  1O7H A;  2BMR A;  3GTE A;  3EN1 A;  3D89 A;  2NVG A;  4NB8 D;  1Z02 A;  1SQQ E;  2YFJ A;  2B24 A;  3GL0 A;  1UUV A;  4OGQ D;  4NBG A;  5AEW A;  1EZV E;  3FOU A;  2DE5 D;  3L74 E;  1RIE A;  3L75 E;  4NBB A;  4QUR A;  1ULI A;  2JO6 A;  2BCC E;  4HM7 A;  1PP9 E;  2XSO A;  2YFL A;  3CXH E;  4NBD D;  3L72 E;  4NBE A;  4HM8 A;  4EMJ B;  1Z03 A;  1VCK A;  4NBC A;  1O7N A;  4HM1 A;  2HMK A;  4HM0 A;  3H1L E;  1P84 E;  4PV1 D;  5CXM A;  1SQV E;  1O7P A;  2NWF A;  2BMQ A;  4QUP A;  2XSH A;  2NVE A;  5KLI C;  2XR8 A;  4QDF A;  1JM1 A;  2CKF A;  3GCE A;  2E4P A;  3TGU E;  4NB9 D;  4NBF A;  2IBZ E;  2HMO A;  2YIU C;  2A06 E;  2I7F A;  1VF5 D;  2QJK C;  2DE6 D;  3VMG A;  4NBC D;  3H1I E;  4HM3 A;  4NBA A;  1O7W A;  4AIV A;  3CWB E;  1RFS A;  3VMI A;  3VMH A;  3GL2 A;  2D2C D;  2ZYL A;  1KB9 E;  1VM9 A;  3CX5 E;  1NYK A;  4HM5 A;  5AEU A;  5KKZ C;  2YVJ B;  3GB4 A;  1BCC E;  1NTK E;  3L71 E;  4QCK A;  1BE3 E;  2GBX A;  3GKQ A;  1FQT A;  1O7G A;  3BCC E;  2HMM A;  2B1X A;  1G8J B;  3GKE A;  3GTS A;  3N0Q A;  5KLV E;  1L0L E;  2DE7 A;  3GZY A;  4NBG D;  2FYU E;  3L70 E;  1NTZ E;  2HMN A;  4NBB D;  2NVF A;  2E75 D;  2E74 D;  4QDF B;  2NUK A;  1NDO A;  2FYN C;  4HM4 A;  1G8K B;  1O7M A;  1SJG A;  3VCA A;  4NBE D;  4P1B H;  1SQX E;  4NB8 A;  2BMO A;  5HL4 A; 
#chains in the Genus database with same CATH topology
 2QJP C;  4NBH D;  2ZT9 D;  2YFI A;  3GOB A;  3DQY A;  4H0L D;  1Z01 A;  2DE5 A;  3H1H E;  2E4Q A;  4QDD A;  3L73 E;  4NBF D;  3GZX A;  4QDC A;  1UUW A;  1WQL A;  1ULJ A;  4NBD A;  2E76 D;  2HMJ A;  3VCP A;  4H44 D;  3C0D A;  3VMG D;  3GCF A;  4NBA D;  2Q3W A;  1WW9 A;  1KYO E;  3VMI D;  3VMH D;  1SQP E;  2GBW A;  2XRX A;  4U3F E;  4H13 D;  3H1J E;  4HKV A;  4NB9 A;  1ZRT E;  1L0N E;  4HM2 A;  4QUQ A;  1SQB E;  5BOK A;  1NTM E;  4AAY B;  2HML A;  2DE6 A;  1EG9 A;  4HM6 A;  4HJL A;  2QPZ A;  1PPJ E;  2DE7 D;  3H1K E;  3EQQ A;  3AZC A;  4PD4 E;  2QJY C;  4NBH A;  2NUM A;  2JZA A;  1Q90 C;  4P1C H;  1NU1 E;  1O7H A;  2BMR A;  3GTE A;  3EN1 A;  3D89 A;  2NVG A;  4NB8 D;  1Z02 A;  1SQQ E;  2YFJ A;  2B24 A;  3GL0 A;  1UUV A;  4OGQ D;  4NBG A;  5AEW A;  1EZV E;  3FOU A;  2DE5 D;  3L74 E;  1RIE A;  3L75 E;  4NBB A;  4QUR A;  1ULI A;  2JO6 A;  2BCC E;  4HM7 A;  1PP9 E;  2XSO A;  2YFL A;  3CXH E;  4NBD D;  3L72 E;  4NBE A;  4HM8 A;  4EMJ B;  1Z03 A;  1VCK A;  4NBC A;  1O7N A;  4HM1 A;  2HMK A;  4HM0 A;  3H1L E;  1P84 E;  4PV1 D;  5CXM A;  1SQV E;  1O7P A;  2NWF A;  2BMQ A;  4QUP A;  2XSH A;  2NVE A;  5KLI C;  2XR8 A;  4QDF A;  1JM1 A;  2CKF A;  3GCE A;  2E4P A;  3TGU E;  4NB9 D;  4NBF A;  2IBZ E;  2HMO A;  2YIU C;  2A06 E;  2I7F A;  1VF5 D;  2QJK C;  2DE6 D;  3VMG A;  4NBC D;  3H1I E;  4HM3 A;  4NBA A;  1O7W A;  4AIV A;  3CWB E;  1RFS A;  3VMI A;  3VMH A;  3GL2 A;  2D2C D;  2ZYL A;  1KB9 E;  1VM9 A;  3CX5 E;  1NYK A;  4HM5 A;  5AEU A;  5KKZ C;  2YVJ B;  3GB4 A;  1BCC E;  1NTK E;  3L71 E;  4QCK A;  1BE3 E;  2GBX A;  3GKQ A;  1FQT A;  1O7G A;  3BCC E;  2HMM A;  2B1X A;  1G8J B;  3GKE A;  3GTS A;  3N0Q A;  5KLV E;  1L0L E;  2DE7 A;  3GZY A;  4NBG D;  2FYU E;  3L70 E;  1NTZ E;  2HMN A;  4NBB D;  2NVF A;  2E75 D;  2E74 D;  4QDF B;  2NUK A;  1NDO A;  2FYN C;  4HM4 A;  1G8K B;  1O7M A;  1SJG A;  3VCA A;  4NBE D;  4P1B H;  1SQX E;  4NB8 A;  2BMO A;  5HL4 A; 
#chains in the Genus database with same CATH homology
 2QJP C;  4NBH D;  2ZT9 D;  2YFI A;  3GOB A;  3DQY A;  4H0L D;  1Z01 A;  2DE5 A;  3H1H E;  2E4Q A;  4QDD A;  3L73 E;  4NBF D;  3GZX A;  4QDC A;  1UUW A;  1WQL A;  1ULJ A;  4NBD A;  2E76 D;  2HMJ A;  3VCP A;  4H44 D;  3C0D A;  3VMG D;  3GCF A;  4NBA D;  2Q3W A;  1WW9 A;  1KYO E;  3VMI D;  3VMH D;  1SQP E;  2GBW A;  2XRX A;  4U3F E;  4H13 D;  3H1J E;  4HKV A;  4NB9 A;  1ZRT E;  1L0N E;  4HM2 A;  4QUQ A;  1SQB E;  5BOK A;  1NTM E;  4AAY B;  2HML A;  2DE6 A;  1EG9 A;  4HM6 A;  4HJL A;  2QPZ A;  1PPJ E;  2DE7 D;  3H1K E;  3EQQ A;  3AZC A;  4PD4 E;  2QJY C;  4NBH A;  2NUM A;  2JZA A;  1Q90 C;  4P1C H;  1NU1 E;  1O7H A;  2BMR A;  3GTE A;  3EN1 A;  3D89 A;  2NVG A;  4NB8 D;  1Z02 A;  1SQQ E;  2YFJ A;  2B24 A;  3GL0 A;  1UUV A;  4OGQ D;  4NBG A;  5AEW A;  1EZV E;  3FOU A;  2DE5 D;  3L74 E;  1RIE A;  3L75 E;  4NBB A;  4QUR A;  1ULI A;  2JO6 A;  2BCC E;  4HM7 A;  1PP9 E;  2XSO A;  2YFL A;  3CXH E;  4NBD D;  3L72 E;  4NBE A;  4HM8 A;  4EMJ B;  1Z03 A;  1VCK A;  4NBC A;  1O7N A;  4HM1 A;  2HMK A;  4HM0 A;  3H1L E;  1P84 E;  4PV1 D;  5CXM A;  1SQV E;  1O7P A;  2NWF A;  2BMQ A;  4QUP A;  2XSH A;  2NVE A;  5KLI C;  2XR8 A;  4QDF A;  1JM1 A;  2CKF A;  3GCE A;  2E4P A;  3TGU E;  4NB9 D;  4NBF A;  2IBZ E;  2HMO A;  2YIU C;  2A06 E;  2I7F A;  1VF5 D;  2QJK C;  2DE6 D;  3VMG A;  4NBC D;  3H1I E;  4HM3 A;  4NBA A;  1O7W A;  4AIV A;  3CWB E;  1RFS A;  3VMI A;  3VMH A;  3GL2 A;  2D2C D;  2ZYL A;  1KB9 E;  1VM9 A;  3CX5 E;  1NYK A;  4HM5 A;  5AEU A;  5KKZ C;  2YVJ B;  3GB4 A;  1BCC E;  1NTK E;  3L71 E;  4QCK A;  1BE3 E;  2GBX A;  3GKQ A;  1FQT A;  1O7G A;  3BCC E;  2HMM A;  2B1X A;  1G8J B;  3GKE A;  3GTS A;  3N0Q A;  5KLV E;  1L0L E;  2DE7 A;  3GZY A;  4NBG D;  2FYU E;  3L70 E;  1NTZ E;  2HMN A;  4NBB D;  2NVF A;  2E75 D;  2E74 D;  4QDF B;  2NUK A;  1NDO A;  2FYN C;  4HM4 A;  1G8K B;  1O7M A;  1SJG A;  3VCA A;  4NBE D;  4P1B H;  1SQX E;  4NB8 A;  2BMO A;  5HL4 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...