1NDOA

Naphthalene 1,2-dioxygenase
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords NAPHTHALENE 1,2-DIOXYGENASE
publication title Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase.
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Non-heme iron dioxygenase
total genus 160
structure length 447
sequence length 447
chains with identical sequence C, E
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 1998-01-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1ndoA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1ndoA01
2DE7D 2I7FA 2XSOA 3CXHE 2ZYLA 1Q90C 4P1BH 2A06E 1Z03A 2HMLA 3VMID 2E75D 4NBGA 4QCKA 2YFLA 3GB4A 4PD4E 1RFSA 1UUWA 3GKEA 4QDCA 3GTEA 2BMOA 2FYNC 3H1IE 2NUKA 1FQTA 3BCCE 1KYOE 2YIUC 4HM3A 3VCAA 4H13D 1Z02A 4NBFA 4NBEA 1P84E 2HMOA 3L71E 4HM7A 3L73E 4QURA 2BMQA 3TGUE 1EG9A 4NBGD 2ZT9D 3CWBE 3L75E 1VF5D 2NVGA 3GCEA 2YVJB 1NTZE 3GL2A 2DE6A 2JO6A 2NVEA 4HM4A 2E76D 1PP9E 4NBFD 4NBED 1BE3E 3GZYA 1JM1A 3L72E 2E74D 4NB8A 4HM2A 1SQQE 4HKVA 1NTKE 2XR8A 3H1JE 4H44D 3VMHA 5CXMA 1NU1E 2DE6D 2HMJA 5BOKA 4HM5A 2JZAA 4OGQD 1G8JB 1G8KB 2HMMA 2FYUE 3EN1A 4QDDA 4NB8D 1SQBE 3L70E 3FOUA 3H1HE 3GTSA 3VMHD 1ZRTE 4NBCA 2GBWA 1RIEA 2GBXA 4HM8A 1SQVE 1EZVE 4QUPA 4AIVA 4NB9A 2HMKA 4HJLA 2E4QA 1VCKA 4NBDA 3CX5E 1NYKA 4HM1A 1L0LE 3GOBA 5HL4A 2BCCE 2CKFA 2D2CD 2B24A 2QPZA 1O7HA 4QDFA 4NBCD 4H0LD 1VM9A 2DE5A 2NWFA 1L0NE 3VCPA 4NB9D 5KLIC 1SQXE 1KB9E 2IBZE 3AZCA 4NBDD 4PV1D 3D89A 5KLVE 4EMJB 3N0QA 1ULIA 1Z01A 4NBHA 2YFIA 1ULJA 3GCFA 2B1XA 2DE5D 2QJYC 1PPJE 1O7WA 1O7PA 4NBBA 3EQQA 3H1LE 2HMNA 2YFJA 4NBHD 2QJKC 4HM0A 1O7MA 2XRXA 4U3FE 2NVFA 3VMGA 4AAYB 4QDFB 2E4PA 3GZXA 3H1KE 2XSHA 1O7NA 4NBBD 2QJPC 1NDOA 4NBAA 5AEWA 2BMRA 1O7GA 1SQPE 4P1CH 3GKQA 1NTME 1UUVA 1SJGA 2Q3WA 3DQYA 3GL0A 2DE7A 1WQLA 3VMGD 5KKZC 3L74E 4HM6A 3C0DA 2NUMA 4QUQA 4NBAD 1BCCE 3VMIA 1WW9A 5AEUA
chains in the Genus database with same CATH superfamily
2DE7D 2I7FA 2XSOA 3CXHE 2ZYLA 1Q90C 4P1BH 2A06E 1Z03A 2HMLA 3VMID 2E75D 4NBGA 4QCKA 2YFLA 3GB4A 4PD4E 1RFSA 1UUWA 3GKEA 4QDCA 3GTEA 2BMOA 2FYNC 3H1IE 2NUKA 1FQTA 3BCCE 1KYOE 2YIUC 4HM3A 3VCAA 4H13D 1Z02A 4NBFA 4NBEA 1P84E 2HMOA 3L71E 4HM7A 3L73E 4QURA 2BMQA 3TGUE 1EG9A 4NBGD 2ZT9D 3CWBE 3L75E 1VF5D 2NVGA 3GCEA 2YVJB 1NTZE 3GL2A 2DE6A 2JO6A 2NVEA 4HM4A 2E76D 1PP9E 4NBFD 4NBED 1BE3E 3GZYA 1JM1A 3L72E 2E74D 4NB8A 4HM2A 1SQQE 4HKVA 1NTKE 2XR8A 3H1JE 4H44D 3VMHA 5CXMA 1NU1E 2DE6D 2HMJA 5BOKA 4HM5A 2JZAA 4OGQD 1G8JB 1G8KB 2HMMA 2FYUE 3EN1A 4QDDA 4NB8D 1SQBE 3L70E 3FOUA 3H1HE 3GTSA 3VMHD 1ZRTE 4NBCA 2GBWA 1RIEA 2GBXA 4HM8A 1SQVE 1EZVE 4QUPA 4AIVA 4NB9A 2HMKA 4HJLA 2E4QA 1VCKA 4NBDA 3CX5E 1NYKA 4HM1A 1L0LE 3GOBA 5HL4A 2BCCE 2CKFA 2D2CD 2B24A 2QPZA 1O7HA 4QDFA 4NBCD 4H0LD 1VM9A 2DE5A 2NWFA 1L0NE 3VCPA 4NB9D 5KLIC 1SQXE 1KB9E 2IBZE 3AZCA 4NBDD 4PV1D 3D89A 5KLVE 4EMJB 3N0QA 1ULIA 1Z01A 4NBHA 2YFIA 1ULJA 3GCFA 2B1XA 2DE5D 2QJYC 1PPJE 1O7WA 1O7PA 4NBBA 3EQQA 3H1LE 2HMNA 2YFJA 4NBHD 2QJKC 4HM0A 1O7MA 2XRXA 4U3FE 2NVFA 3VMGA 4AAYB 4QDFB 2E4PA 3GZXA 3H1KE 2XSHA 1O7NA 4NBBD 2QJPC 1NDOA 4NBAA 5AEWA 2BMRA 1O7GA 1SQPE 4P1CH 3GKQA 1NTME 1UUVA 1SJGA 2Q3WA 3DQYA 3GL0A 2DE7A 1WQLA 3VMGD 5KKZC 3L74E 4HM6A 3C0DA 2NUMA 4QUQA 4NBAD 1BCCE 3VMIA 1WW9A 5AEUA
chains in the Genus database with same CATH topology
2DE7D 2I7FA 2XSOA 3CXHE 2ZYLA 1Q90C 4P1BH 2A06E 1Z03A 2HMLA 3VMID 2E75D 4NBGA 4QCKA 2YFLA 3GB4A 4PD4E 1RFSA 1UUWA 3GKEA 4QDCA 3GTEA 2BMOA 2FYNC 3H1IE 2NUKA 1FQTA 3BCCE 1KYOE 2YIUC 4HM3A 3VCAA 4H13D 1Z02A 4NBFA 4NBEA 1P84E 2HMOA 3L71E 4HM7A 3L73E 4QURA 2BMQA 3TGUE 1EG9A 4NBGD 2ZT9D 3CWBE 3L75E 1VF5D 2NVGA 3GCEA 2YVJB 1NTZE 3GL2A 2DE6A 2JO6A 2NVEA 4HM4A 2E76D 1PP9E 4NBFD 4NBED 1BE3E 3GZYA 1JM1A 3L72E 2E74D 4NB8A 4HM2A 1SQQE 4HKVA 1NTKE 2XR8A 3H1JE 4H44D 3VMHA 5CXMA 1NU1E 2DE6D 2HMJA 5BOKA 4HM5A 2JZAA 4OGQD 1G8JB 1G8KB 2HMMA 2FYUE 3EN1A 4QDDA 4NB8D 1SQBE 3L70E 3FOUA 3H1HE 3GTSA 3VMHD 1ZRTE 4NBCA 2GBWA 1RIEA 2GBXA 4HM8A 1SQVE 1EZVE 4QUPA 4AIVA 4NB9A 2HMKA 4HJLA 2E4QA 1VCKA 4NBDA 3CX5E 1NYKA 4HM1A 1L0LE 3GOBA 5HL4A 2BCCE 2CKFA 2D2CD 2B24A 2QPZA 1O7HA 4QDFA 4NBCD 4H0LD 1VM9A 2DE5A 2NWFA 1L0NE 3VCPA 4NB9D 5KLIC 1SQXE 1KB9E 2IBZE 3AZCA 4NBDD 4PV1D 3D89A 5KLVE 4EMJB 3N0QA 1ULIA 1Z01A 4NBHA 2YFIA 1ULJA 3GCFA 2B1XA 2DE5D 2QJYC 1PPJE 1O7WA 1O7PA 4NBBA 3EQQA 3H1LE 2HMNA 2YFJA 4NBHD 2QJKC 4HM0A 1O7MA 2XRXA 4U3FE 2NVFA 3VMGA 4AAYB 4QDFB 2E4PA 3GZXA 3H1KE 2XSHA 1O7NA 4NBBD 2QJPC 1NDOA 4NBAA 5AEWA 2BMRA 1O7GA 1SQPE 4P1CH 3GKQA 1NTME 1UUVA 1SJGA 2Q3WA 3DQYA 3GL0A 2DE7A 1WQLA 3VMGD 5KKZC 3L74E 4HM6A 3C0DA 2NUMA 4QUQA 4NBAD 1BCCE 3VMIA 1WW9A 5AEUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DE7 D;  2I7F A;  2XSO A;  3CXH E;  2ZYL A;  1Q90 C;  4P1B H;  2A06 E;  1Z03 A;  2HML A;  3VMI D;  2E75 D;  4NBG A;  4QCK A;  2YFL A;  3GB4 A;  4PD4 E;  1RFS A;  1UUW A;  3GKE A;  4QDC A;  3GTE A;  2BMO A;  2FYN C;  3H1I E;  2NUK A;  1FQT A;  3BCC E;  1KYO E;  2YIU C;  4HM3 A;  3VCA A;  4H13 D;  1Z02 A;  4NBF A;  4NBE A;  1P84 E;  2HMO A;  3L71 E;  4HM7 A;  3L73 E;  4QUR A;  2BMQ A;  3TGU E;  1EG9 A;  4NBG D;  2ZT9 D;  3CWB E;  3L75 E;  1VF5 D;  2NVG A;  3GCE A;  2YVJ B;  1NTZ E;  3GL2 A;  2DE6 A;  2JO6 A;  2NVE A;  4HM4 A;  2E76 D;  1PP9 E;  4NBF D;  4NBE D;  1BE3 E;  3GZY A;  1JM1 A;  3L72 E;  2E74 D;  4NB8 A;  4HM2 A;  1SQQ E;  4HKV A;  1NTK E;  2XR8 A;  3H1J E;  4H44 D;  3VMH A;  5CXM A;  1NU1 E;  2DE6 D;  2HMJ A;  5BOK A;  4HM5 A;  2JZA A;  4OGQ D;  1G8J B;  1G8K B;  2HMM A;  2FYU E;  3EN1 A;  4QDD A;  4NB8 D;  1SQB E;  3L70 E;  3FOU A;  3H1H E;  3GTS A;  3VMH D;  1ZRT E;  4NBC A;  2GBW A;  1RIE A;  2GBX A;  4HM8 A;  1SQV E;  1EZV E;  4QUP A;  4AIV A;  4NB9 A;  2HMK A;  4HJL A;  2E4Q A;  1VCK A;  4NBD A;  3CX5 E;  1NYK A;  4HM1 A;  1L0L E;  3GOB A;  5HL4 A;  2BCC E;  2CKF A;  2D2C D;  2B24 A;  2QPZ A;  1O7H A;  4QDF A;  4NBC D;  4H0L D;  1VM9 A;  2DE5 A;  2NWF A;  1L0N E;  3VCP A;  4NB9 D;  5KLI C;  1SQX E;  1KB9 E;  2IBZ E;  3AZC A;  4NBD D;  4PV1 D;  3D89 A;  5KLV E;  4EMJ B;  3N0Q A;  1ULI A;  1Z01 A;  4NBH A;  2YFI A;  1ULJ A;  3GCF A;  2B1X A;  2DE5 D;  2QJY C;  1PPJ E;  1O7W A;  1O7P A;  4NBB A;  3EQQ A;  3H1L E;  2HMN A;  2YFJ A;  4NBH D;  2QJK C;  4HM0 A;  1O7M A;  2XRX A;  4U3F E;  2NVF A;  3VMG A;  4AAY B;  4QDF B;  2E4P A;  3GZX A;  3H1K E;  2XSH A;  1O7N A;  4NBB D;  2QJP C;  1NDO A;  4NBA A;  5AEW A;  2BMR A;  1O7G A;  1SQP E;  4P1C H;  3GKQ A;  1NTM E;  1UUV A;  1SJG A;  2Q3W A;  3DQY A;  3GL0 A;  2DE7 A;  1WQL A;  3VMG D;  5KKZ C;  3L74 E;  4HM6 A;  3C0D A;  2NUM A;  4QUQ A;  4NBA D;  1BCC E;  3VMI A;  1WW9 A;  5AEU A; 
#chains in the Genus database with same CATH topology
 2DE7 D;  2I7F A;  2XSO A;  3CXH E;  2ZYL A;  1Q90 C;  4P1B H;  2A06 E;  1Z03 A;  2HML A;  3VMI D;  2E75 D;  4NBG A;  4QCK A;  2YFL A;  3GB4 A;  4PD4 E;  1RFS A;  1UUW A;  3GKE A;  4QDC A;  3GTE A;  2BMO A;  2FYN C;  3H1I E;  2NUK A;  1FQT A;  3BCC E;  1KYO E;  2YIU C;  4HM3 A;  3VCA A;  4H13 D;  1Z02 A;  4NBF A;  4NBE A;  1P84 E;  2HMO A;  3L71 E;  4HM7 A;  3L73 E;  4QUR A;  2BMQ A;  3TGU E;  1EG9 A;  4NBG D;  2ZT9 D;  3CWB E;  3L75 E;  1VF5 D;  2NVG A;  3GCE A;  2YVJ B;  1NTZ E;  3GL2 A;  2DE6 A;  2JO6 A;  2NVE A;  4HM4 A;  2E76 D;  1PP9 E;  4NBF D;  4NBE D;  1BE3 E;  3GZY A;  1JM1 A;  3L72 E;  2E74 D;  4NB8 A;  4HM2 A;  1SQQ E;  4HKV A;  1NTK E;  2XR8 A;  3H1J E;  4H44 D;  3VMH A;  5CXM A;  1NU1 E;  2DE6 D;  2HMJ A;  5BOK A;  4HM5 A;  2JZA A;  4OGQ D;  1G8J B;  1G8K B;  2HMM A;  2FYU E;  3EN1 A;  4QDD A;  4NB8 D;  1SQB E;  3L70 E;  3FOU A;  3H1H E;  3GTS A;  3VMH D;  1ZRT E;  4NBC A;  2GBW A;  1RIE A;  2GBX A;  4HM8 A;  1SQV E;  1EZV E;  4QUP A;  4AIV A;  4NB9 A;  2HMK A;  4HJL A;  2E4Q A;  1VCK A;  4NBD A;  3CX5 E;  1NYK A;  4HM1 A;  1L0L E;  3GOB A;  5HL4 A;  2BCC E;  2CKF A;  2D2C D;  2B24 A;  2QPZ A;  1O7H A;  4QDF A;  4NBC D;  4H0L D;  1VM9 A;  2DE5 A;  2NWF A;  1L0N E;  3VCP A;  4NB9 D;  5KLI C;  1SQX E;  1KB9 E;  2IBZ E;  3AZC A;  4NBD D;  4PV1 D;  3D89 A;  5KLV E;  4EMJ B;  3N0Q A;  1ULI A;  1Z01 A;  4NBH A;  2YFI A;  1ULJ A;  3GCF A;  2B1X A;  2DE5 D;  2QJY C;  1PPJ E;  1O7W A;  1O7P A;  4NBB A;  3EQQ A;  3H1L E;  2HMN A;  2YFJ A;  4NBH D;  2QJK C;  4HM0 A;  1O7M A;  2XRX A;  4U3F E;  2NVF A;  3VMG A;  4AAY B;  4QDF B;  2E4P A;  3GZX A;  3H1K E;  2XSH A;  1O7N A;  4NBB D;  2QJP C;  1NDO A;  4NBA A;  5AEW A;  2BMR A;  1O7G A;  1SQP E;  4P1C H;  3GKQ A;  1NTM E;  1UUV A;  1SJG A;  2Q3W A;  3DQY A;  3GL0 A;  2DE7 A;  1WQL A;  3VMG D;  5KKZ C;  3L74 E;  4HM6 A;  3C0D A;  2NUM A;  4QUQ A;  4NBA D;  1BCC E;  3VMI A;  1WW9 A;  5AEU A; 
#chains in the Genus database with same CATH homology
 2DE7 D;  2I7F A;  2XSO A;  3CXH E;  2ZYL A;  1Q90 C;  4P1B H;  2A06 E;  1Z03 A;  2HML A;  3VMI D;  2E75 D;  4NBG A;  4QCK A;  2YFL A;  3GB4 A;  4PD4 E;  1RFS A;  1UUW A;  3GKE A;  4QDC A;  3GTE A;  2BMO A;  2FYN C;  3H1I E;  2NUK A;  1FQT A;  3BCC E;  1KYO E;  2YIU C;  4HM3 A;  3VCA A;  4H13 D;  1Z02 A;  4NBF A;  4NBE A;  1P84 E;  2HMO A;  3L71 E;  4HM7 A;  3L73 E;  4QUR A;  2BMQ A;  3TGU E;  1EG9 A;  4NBG D;  2ZT9 D;  3CWB E;  3L75 E;  1VF5 D;  2NVG A;  3GCE A;  2YVJ B;  1NTZ E;  3GL2 A;  2DE6 A;  2JO6 A;  2NVE A;  4HM4 A;  2E76 D;  1PP9 E;  4NBF D;  4NBE D;  1BE3 E;  3GZY A;  1JM1 A;  3L72 E;  2E74 D;  4NB8 A;  4HM2 A;  1SQQ E;  4HKV A;  1NTK E;  2XR8 A;  3H1J E;  4H44 D;  3VMH A;  5CXM A;  1NU1 E;  2DE6 D;  2HMJ A;  5BOK A;  4HM5 A;  2JZA A;  4OGQ D;  1G8J B;  1G8K B;  2HMM A;  2FYU E;  3EN1 A;  4QDD A;  4NB8 D;  1SQB E;  3L70 E;  3FOU A;  3H1H E;  3GTS A;  3VMH D;  1ZRT E;  4NBC A;  2GBW A;  1RIE A;  2GBX A;  4HM8 A;  1SQV E;  1EZV E;  4QUP A;  4AIV A;  4NB9 A;  2HMK A;  4HJL A;  2E4Q A;  1VCK A;  4NBD A;  3CX5 E;  1NYK A;  4HM1 A;  1L0L E;  3GOB A;  5HL4 A;  2BCC E;  2CKF A;  2D2C D;  2B24 A;  2QPZ A;  1O7H A;  4QDF A;  4NBC D;  4H0L D;  1VM9 A;  2DE5 A;  2NWF A;  1L0N E;  3VCP A;  4NB9 D;  5KLI C;  1SQX E;  1KB9 E;  2IBZ E;  3AZC A;  4NBD D;  4PV1 D;  3D89 A;  5KLV E;  4EMJ B;  3N0Q A;  1ULI A;  1Z01 A;  4NBH A;  2YFI A;  1ULJ A;  3GCF A;  2B1X A;  2DE5 D;  2QJY C;  1PPJ E;  1O7W A;  1O7P A;  4NBB A;  3EQQ A;  3H1L E;  2HMN A;  2YFJ A;  4NBH D;  2QJK C;  4HM0 A;  1O7M A;  2XRX A;  4U3F E;  2NVF A;  3VMG A;  4AAY B;  4QDF B;  2E4P A;  3GZX A;  3H1K E;  2XSH A;  1O7N A;  4NBB D;  2QJP C;  1NDO A;  4NBA A;  5AEW A;  2BMR A;  1O7G A;  1SQP E;  4P1C H;  3GKQ A;  1NTM E;  1UUV A;  1SJG A;  2Q3W A;  3DQY A;  3GL0 A;  2DE7 A;  1WQL A;  3VMG D;  5KKZ C;  3L74 E;  4HM6 A;  3C0D A;  2NUM A;  4QUQ A;  4NBA D;  1BCC E;  3VMI A;  1WW9 A;  5AEU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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