2DE5D

Crystal structure of the electron transfer complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
105
structure length
105
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords terminal oxygenase component of carbazole
publication title Electron Transfer Complex Formation between Oxygenase and Ferredoxin Components in Rieske Nonheme Iron Oxygenase System
pubmed doi rcsb
source organism Janthinobacterium
total genus 18
structure length 105
sequence length 105
chains with identical sequence E, F
ec nomenclature ec 1.14.12.-:
pdb deposition date 2006-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2de5D00
1P84E 3C0DA 1FQTA 1PPJE 1NTME 1SQQE 4QDFB 5HL4A 1O7MA 3GKEA 2DE6D 4NBAD 2FYNC 2XR8A 4QUQA 1SQXE 4HJLA 2GBWA 1JM1A 3GZXA 5BOKA 4NBHD 2NVFA 3H1KE 4QCKA 1RIEA 2YFIA 1SQPE 2QJYC 2NUMA 1NTZE 2XSHA 4P1BH 3GTEA 4HM1A 4HM5A 2FYUE 5AEWA 4NBDD 1G8JB 4HM6A 3L72E 4OGQD 1VM9A 1BCCE 1O7PA 2JO6A 3H1HE 3H1IE 5AEUA 2JZAA 5KLVE 3VCAA 4HKVA 1NTKE 1EG9A 2XSOA 3DQYA 2A06E 4AIVA 3CXHE 5KLIC 2E75D 4QUPA 4HM0A 2YFLA 3L73E 1VCKA 4NBED 4QDFA 1SJGA 2E74D 1NDOA 2NUKA 3AZCA 4QURA 2HMLA 3H1JE 1SQVE 3EQQA 3VMID 3GTSA 4NBFD 4HM3A 3N0QA 1Q90C 2GBXA 3FOUA 1PP9E 4HM4A 4QDDA 4U3FE 2YIUC 4QDCA 2B24A 2YFJA 1VF5D 2Q3WA 3VCPA 1SQBE 4H13D 2B1XA 3GL0A 4NBBD 2BMQA 2QJPC 3D89A 2E4PA 4PV1D 2BCCE 3TGUE 3GB4A 5CXMA 1NU1E 4PD4E 4P1CH 1O7HA 3H1LE 2IBZE 2XRXA 4H44D 4NB9D 5KKZC 3EN1A 2BMOA 4HM8A 2YVJB 2E4QA 1WQLA 2HMOA 4HM7A 1UUVA 3VMGD 2QPZA 3CWBE 1L0LE 2CKFA 3L70E 2HMMA 2ZT9D 3GZYA 2HMNA 1ZRTE 1O7WA 4HM2A 3L71E 3GL2A 3CX5E 2I7FA 2NVGA 1ULIA 1KYOE 1O7GA 2NWFA 1UUWA 2HMKA 4NB8D 2ZYLA 1O7NA 4EMJB 3GOBA 4H0LD 3L74E 1EZVE 2D2CD 1ULJA 1KB9E 2NVEA 3L75E 2QJKC 3VMHD 4AAYB 1BE3E 1G8KB 2DE5D 3GCEA 2E76D 4NBCD 2BMRA 2HMJA 2DE7D 1RFSA 1NYKA 4NBGD 3BCCE 1L0NE
chains in the Genus database with same CATH superfamily
1P84E 3C0DA 1FQTA 1PPJE 1NTME 1SQQE 4QDFB 5HL4A 1O7MA 3GKEA 2DE6D 4NBAD 2FYNC 2XR8A 4QUQA 1SQXE 4HJLA 2GBWA 1JM1A 3GZXA 5BOKA 4NBHD 2NVFA 3H1KE 4QCKA 1RIEA 2YFIA 1SQPE 2QJYC 2NUMA 1NTZE 2XSHA 4P1BH 3GTEA 4HM1A 4HM5A 2FYUE 5AEWA 4NBDD 1G8JB 4HM6A 3L72E 4OGQD 1VM9A 1BCCE 1O7PA 2JO6A 3H1HE 3H1IE 5AEUA 2JZAA 5KLVE 3VCAA 4HKVA 1NTKE 1EG9A 2XSOA 3DQYA 2A06E 4AIVA 3CXHE 5KLIC 2E75D 4QUPA 4HM0A 2YFLA 3L73E 1VCKA 4NBED 4QDFA 1SJGA 2E74D 1NDOA 2NUKA 3AZCA 4QURA 2HMLA 3H1JE 1SQVE 3EQQA 3VMID 3GTSA 4NBFD 4HM3A 3N0QA 1Q90C 2GBXA 3FOUA 1PP9E 4HM4A 4QDDA 4U3FE 2YIUC 4QDCA 2B24A 2YFJA 1VF5D 2Q3WA 3VCPA 1SQBE 4H13D 2B1XA 3GL0A 4NBBD 2BMQA 2QJPC 3D89A 2E4PA 4PV1D 2BCCE 3TGUE 3GB4A 5CXMA 1NU1E 4PD4E 4P1CH 1O7HA 3H1LE 2IBZE 2XRXA 4H44D 4NB9D 5KKZC 3EN1A 2BMOA 4HM8A 2YVJB 2E4QA 1WQLA 2HMOA 4HM7A 1UUVA 3VMGD 2QPZA 3CWBE 1L0LE 2CKFA 3L70E 2HMMA 2ZT9D 3GZYA 2HMNA 1ZRTE 1O7WA 4HM2A 3L71E 3GL2A 3CX5E 2I7FA 2NVGA 1ULIA 1KYOE 1O7GA 2NWFA 1UUWA 2HMKA 4NB8D 2ZYLA 1O7NA 4EMJB 3GOBA 4H0LD 3L74E 1EZVE 2D2CD 1ULJA 1KB9E 2NVEA 3L75E 2QJKC 3VMHD 4AAYB 1BE3E 1G8KB 2DE5D 3GCEA 2E76D 4NBCD 2BMRA 2HMJA 2DE7D 1RFSA 1NYKA 4NBGD 3BCCE 1L0NE
chains in the Genus database with same CATH topology
1P84E 3C0DA 1FQTA 1PPJE 1NTME 1SQQE 4QDFB 5HL4A 1O7MA 3GKEA 2DE6D 4NBAD 2FYNC 2XR8A 4QUQA 1SQXE 4HJLA 2GBWA 1JM1A 3GZXA 5BOKA 4NBHD 2NVFA 3H1KE 4QCKA 1RIEA 2YFIA 1SQPE 2QJYC 2NUMA 1NTZE 2XSHA 4P1BH 3GTEA 4HM1A 4HM5A 2FYUE 5AEWA 4NBDD 1G8JB 4HM6A 3L72E 4OGQD 1VM9A 1BCCE 1O7PA 2JO6A 3H1HE 3H1IE 5AEUA 2JZAA 5KLVE 3VCAA 4HKVA 1NTKE 1EG9A 2XSOA 3DQYA 2A06E 4AIVA 3CXHE 5KLIC 2E75D 4QUPA 4HM0A 2YFLA 3L73E 1VCKA 4NBED 4QDFA 1SJGA 2E74D 1NDOA 2NUKA 3AZCA 4QURA 2HMLA 3H1JE 1SQVE 3EQQA 3VMID 3GTSA 4NBFD 4HM3A 3N0QA 1Q90C 2GBXA 3FOUA 1PP9E 4HM4A 4QDDA 4U3FE 2YIUC 4QDCA 2B24A 2YFJA 1VF5D 2Q3WA 3VCPA 1SQBE 4H13D 2B1XA 3GL0A 4NBBD 2BMQA 2QJPC 3D89A 2E4PA 4PV1D 2BCCE 3TGUE 3GB4A 5CXMA 1NU1E 4PD4E 4P1CH 1O7HA 3H1LE 2IBZE 2XRXA 4H44D 4NB9D 5KKZC 3EN1A 2BMOA 4HM8A 2YVJB 2E4QA 1WQLA 2HMOA 4HM7A 1UUVA 3VMGD 2QPZA 3CWBE 1L0LE 2CKFA 3L70E 2HMMA 2ZT9D 3GZYA 2HMNA 1ZRTE 1O7WA 4HM2A 3L71E 3GL2A 3CX5E 2I7FA 2NVGA 1ULIA 1KYOE 1O7GA 2NWFA 1UUWA 2HMKA 4NB8D 2ZYLA 1O7NA 4EMJB 3GOBA 4H0LD 3L74E 1EZVE 2D2CD 1ULJA 1KB9E 2NVEA 3L75E 2QJKC 3VMHD 4AAYB 1BE3E 1G8KB 2DE5D 3GCEA 2E76D 4NBCD 2BMRA 2HMJA 2DE7D 1RFSA 1NYKA 4NBGD 3BCCE 1L0NE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P84 E;  3C0D A;  1FQT A;  1PPJ E;  1NTM E;  1SQQ E;  4QDF B;  5HL4 A;  1O7M A;  3GKE A;  2DE6 D;  4NBA D;  2FYN C;  2XR8 A;  4QUQ A;  1SQX E;  4HJL A;  2GBW A;  1JM1 A;  3GZX A;  5BOK A;  4NBH D;  2NVF A;  3H1K E;  4QCK A;  1RIE A;  2YFI A;  1SQP E;  2QJY C;  2NUM A;  1NTZ E;  2XSH A;  4P1B H;  3GTE A;  4HM1 A;  4HM5 A;  2FYU E;  5AEW A;  4NBD D;  1G8J B;  4HM6 A;  3L72 E;  4OGQ D;  1VM9 A;  1BCC E;  1O7P A;  2JO6 A;  3H1H E;  3H1I E;  5AEU A;  2JZA A;  5KLV E;  3VCA A;  4HKV A;  1NTK E;  1EG9 A;  2XSO A;  3DQY A;  2A06 E;  4AIV A;  3CXH E;  5KLI C;  2E75 D;  4QUP A;  4HM0 A;  2YFL A;  3L73 E;  1VCK A;  4NBE D;  4QDF A;  1SJG A;  2E74 D;  1NDO A;  2NUK A;  3AZC A;  4QUR A;  2HML A;  3H1J E;  1SQV E;  3EQQ A;  3VMI D;  3GTS A;  4NBF D;  4HM3 A;  3N0Q A;  1Q90 C;  2GBX A;  3FOU A;  1PP9 E;  4HM4 A;  4QDD A;  4U3F E;  2YIU C;  4QDC A;  2B24 A;  2YFJ A;  1VF5 D;  2Q3W A;  3VCP A;  1SQB E;  4H13 D;  2B1X A;  3GL0 A;  4NBB D;  2BMQ A;  2QJP C;  3D89 A;  2E4P A;  4PV1 D;  2BCC E;  3TGU E;  3GB4 A;  5CXM A;  1NU1 E;  4PD4 E;  4P1C H;  1O7H A;  3H1L E;  2IBZ E;  2XRX A;  4H44 D;  4NB9 D;  5KKZ C;  3EN1 A;  2BMO A;  4HM8 A;  2YVJ B;  2E4Q A;  1WQL A;  2HMO A;  4HM7 A;  1UUV A;  3VMG D;  2QPZ A;  3CWB E;  1L0L E;  2CKF A;  3L70 E;  2HMM A;  2ZT9 D;  3GZY A;  2HMN A;  1ZRT E;  1O7W A;  4HM2 A;  3L71 E;  3GL2 A;  3CX5 E;  2I7F A;  2NVG A;  1ULI A;  1KYO E;  1O7G A;  2NWF A;  1UUW A;  2HMK A;  4NB8 D;  2ZYL A;  1O7N A;  4EMJ B;  3GOB A;  4H0L D;  3L74 E;  1EZV E;  2D2C D;  1ULJ A;  1KB9 E;  2NVE A;  3L75 E;  2QJK C;  3VMH D;  4AAY B;  1BE3 E;  1G8K B;  2DE5 D;  3GCE A;  2E76 D;  4NBC D;  2BMR A;  2HMJ A;  2DE7 D;  1RFS A;  1NYK A;  4NBG D;  3BCC E;  1L0N E; 
#chains in the Genus database with same CATH topology
 1P84 E;  3C0D A;  1FQT A;  1PPJ E;  1NTM E;  1SQQ E;  4QDF B;  5HL4 A;  1O7M A;  3GKE A;  2DE6 D;  4NBA D;  2FYN C;  2XR8 A;  4QUQ A;  1SQX E;  4HJL A;  2GBW A;  1JM1 A;  3GZX A;  5BOK A;  4NBH D;  2NVF A;  3H1K E;  4QCK A;  1RIE A;  2YFI A;  1SQP E;  2QJY C;  2NUM A;  1NTZ E;  2XSH A;  4P1B H;  3GTE A;  4HM1 A;  4HM5 A;  2FYU E;  5AEW A;  4NBD D;  1G8J B;  4HM6 A;  3L72 E;  4OGQ D;  1VM9 A;  1BCC E;  1O7P A;  2JO6 A;  3H1H E;  3H1I E;  5AEU A;  2JZA A;  5KLV E;  3VCA A;  4HKV A;  1NTK E;  1EG9 A;  2XSO A;  3DQY A;  2A06 E;  4AIV A;  3CXH E;  5KLI C;  2E75 D;  4QUP A;  4HM0 A;  2YFL A;  3L73 E;  1VCK A;  4NBE D;  4QDF A;  1SJG A;  2E74 D;  1NDO A;  2NUK A;  3AZC A;  4QUR A;  2HML A;  3H1J E;  1SQV E;  3EQQ A;  3VMI D;  3GTS A;  4NBF D;  4HM3 A;  3N0Q A;  1Q90 C;  2GBX A;  3FOU A;  1PP9 E;  4HM4 A;  4QDD A;  4U3F E;  2YIU C;  4QDC A;  2B24 A;  2YFJ A;  1VF5 D;  2Q3W A;  3VCP A;  1SQB E;  4H13 D;  2B1X A;  3GL0 A;  4NBB D;  2BMQ A;  2QJP C;  3D89 A;  2E4P A;  4PV1 D;  2BCC E;  3TGU E;  3GB4 A;  5CXM A;  1NU1 E;  4PD4 E;  4P1C H;  1O7H A;  3H1L E;  2IBZ E;  2XRX A;  4H44 D;  4NB9 D;  5KKZ C;  3EN1 A;  2BMO A;  4HM8 A;  2YVJ B;  2E4Q A;  1WQL A;  2HMO A;  4HM7 A;  1UUV A;  3VMG D;  2QPZ A;  3CWB E;  1L0L E;  2CKF A;  3L70 E;  2HMM A;  2ZT9 D;  3GZY A;  2HMN A;  1ZRT E;  1O7W A;  4HM2 A;  3L71 E;  3GL2 A;  3CX5 E;  2I7F A;  2NVG A;  1ULI A;  1KYO E;  1O7G A;  2NWF A;  1UUW A;  2HMK A;  4NB8 D;  2ZYL A;  1O7N A;  4EMJ B;  3GOB A;  4H0L D;  3L74 E;  1EZV E;  2D2C D;  1ULJ A;  1KB9 E;  2NVE A;  3L75 E;  2QJK C;  3VMH D;  4AAY B;  1BE3 E;  1G8K B;  2DE5 D;  3GCE A;  2E76 D;  4NBC D;  2BMR A;  2HMJ A;  2DE7 D;  1RFS A;  1NYK A;  4NBG D;  3BCC E;  1L0N E; 
#chains in the Genus database with same CATH homology
 1P84 E;  3C0D A;  1FQT A;  1PPJ E;  1NTM E;  1SQQ E;  4QDF B;  5HL4 A;  1O7M A;  3GKE A;  2DE6 D;  4NBA D;  2FYN C;  2XR8 A;  4QUQ A;  1SQX E;  4HJL A;  2GBW A;  1JM1 A;  3GZX A;  5BOK A;  4NBH D;  2NVF A;  3H1K E;  4QCK A;  1RIE A;  2YFI A;  1SQP E;  2QJY C;  2NUM A;  1NTZ E;  2XSH A;  4P1B H;  3GTE A;  4HM1 A;  4HM5 A;  2FYU E;  5AEW A;  4NBD D;  1G8J B;  4HM6 A;  3L72 E;  4OGQ D;  1VM9 A;  1BCC E;  1O7P A;  2JO6 A;  3H1H E;  3H1I E;  5AEU A;  2JZA A;  5KLV E;  3VCA A;  4HKV A;  1NTK E;  1EG9 A;  2XSO A;  3DQY A;  2A06 E;  4AIV A;  3CXH E;  5KLI C;  2E75 D;  4QUP A;  4HM0 A;  2YFL A;  3L73 E;  1VCK A;  4NBE D;  4QDF A;  1SJG A;  2E74 D;  1NDO A;  2NUK A;  3AZC A;  4QUR A;  2HML A;  3H1J E;  1SQV E;  3EQQ A;  3VMI D;  3GTS A;  4NBF D;  4HM3 A;  3N0Q A;  1Q90 C;  2GBX A;  3FOU A;  1PP9 E;  4HM4 A;  4QDD A;  4U3F E;  2YIU C;  4QDC A;  2B24 A;  2YFJ A;  1VF5 D;  2Q3W A;  3VCP A;  1SQB E;  4H13 D;  2B1X A;  3GL0 A;  4NBB D;  2BMQ A;  2QJP C;  3D89 A;  2E4P A;  4PV1 D;  2BCC E;  3TGU E;  3GB4 A;  5CXM A;  1NU1 E;  4PD4 E;  4P1C H;  1O7H A;  3H1L E;  2IBZ E;  2XRX A;  4H44 D;  4NB9 D;  5KKZ C;  3EN1 A;  2BMO A;  4HM8 A;  2YVJ B;  2E4Q A;  1WQL A;  2HMO A;  4HM7 A;  1UUV A;  3VMG D;  2QPZ A;  3CWB E;  1L0L E;  2CKF A;  3L70 E;  2HMM A;  2ZT9 D;  3GZY A;  2HMN A;  1ZRT E;  1O7W A;  4HM2 A;  3L71 E;  3GL2 A;  3CX5 E;  2I7F A;  2NVG A;  1ULI A;  1KYO E;  1O7G A;  2NWF A;  1UUW A;  2HMK A;  4NB8 D;  2ZYL A;  1O7N A;  4EMJ B;  3GOB A;  4H0L D;  3L74 E;  1EZV E;  2D2C D;  1ULJ A;  1KB9 E;  2NVE A;  3L75 E;  2QJK C;  3VMH D;  4AAY B;  1BE3 E;  1G8K B;  2DE5 D;  3GCE A;  2E76 D;  4NBC D;  2BMR A;  2HMJ A;  2DE7 D;  1RFS A;  1NYK A;  4NBG D;  3BCC E;  1L0N E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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