2DE5D

Crystal structure of the electron transfer complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
105
structure length
105
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords terminal oxygenase component of carbazole
publication title Electron Transfer Complex Formation between Oxygenase and Ferredoxin Components in Rieske Nonheme Iron Oxygenase System
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 18
structure length 105
sequence length 105
chains with identical sequence E, F
ec nomenclature ec 1.14.12.-:
pdb deposition date 2006-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2de5D00
2BCCE 2YFLA 4AIVA 2E74D 2YFJA 3VMGD 3CXHE 2QJPC 1ULIA 1KYOE 2NVEA 2YIUC 5HL4A 3VMHD 2BMQA 4U3FE 5KLIC 5BOKA 3AZCA 1NTKE 5KKZC 1FQTA 4NBHD 1P84E 2IBZE 1VM9A 2XR8A 1O7WA 3GCEA 5KLVE 1BCCE 2E75D 2DE7D 4HM1A 4H44D 3L72E 4NBED 3DQYA 2ZT9D 4NB8D 2JZAA 1RFSA 2NVGA 4QDDA 1SQXE 1G8JB 3N0QA 1UUWA 2B1XA 3VMID 4QDFB 2JO6A 2ZYLA 1UUVA 2HMOA 4QURA 4H0LD 4HM2A 2YFIA 3GTEA 3GTSA 2YVJB 1SQQE 1EZVE 2Q3WA 2CKFA 2HMKA 2NUMA 1ZRTE 1RIEA 1Q90C 2FYNC 1SJGA 4NBBD 3C0DA 3GKEA 1O7PA 4HM6A 4QDFA 2HMNA 4NBCD 4HM8A 2XSOA 1NTME 2D2CD 3L75E 4AAYB 1G8KB 1EG9A 1SQVE 1O7NA 2E4QA 2NUKA 4HM5A 1WQLA 2QJYC 2B24A 1PPJE 3L74E 4H13D 3H1HE 3BCCE 1NDOA 2GBWA 1O7HA 4HM4A 3CWBE 2GBXA 3VCPA 2E4PA 3GZXA 3GZYA 4QUQA 3EN1A 3TGUE 3EQQA 2HMMA 4HKVA 4NBFD 2QJKC 3VCAA 4PV1D 2NWFA 1SQPE 2HMJA 3H1JE 3GOBA 4NBGD 2FYUE 1ULJA 3L73E 3L70E 1PP9E 2E76D 1L0NE 2DE6D 4PD4E 4QUPA 3L71E 4HM7A 4QDCA 3H1IE 2HMLA 1JM1A 1VCKA 2QPZA 1NTZE 1O7MA 5CXMA 4HM3A 3GL0A 1VF5D 1KB9E 1NYKA 2XSHA 4P1BH 1SQBE 2A06E 4HJLA 1L0LE 3H1KE 2XRXA 1O7GA 4QCKA 2BMRA 1NU1E 2NVFA 4NBAD 4EMJB 2DE5D 3FOUA 3H1LE 5AEWA 4NBDD 4HM0A 5AEUA 4P1CH 2BMOA 4NB9D 1BE3E 3GB4A 4OGQD 3D89A 3CX5E 2I7FA 3GL2A
chains in the Genus database with same CATH superfamily
2BCCE 2YFLA 4AIVA 2E74D 2YFJA 3VMGD 3CXHE 2QJPC 1ULIA 1KYOE 2NVEA 2YIUC 5HL4A 3VMHD 2BMQA 4U3FE 5KLIC 5BOKA 3AZCA 1NTKE 5KKZC 1FQTA 4NBHD 1P84E 2IBZE 1VM9A 2XR8A 1O7WA 3GCEA 5KLVE 1BCCE 2E75D 2DE7D 4HM1A 4H44D 3L72E 4NBED 3DQYA 2ZT9D 4NB8D 2JZAA 1RFSA 2NVGA 4QDDA 1SQXE 1G8JB 3N0QA 1UUWA 2B1XA 3VMID 4QDFB 2JO6A 2ZYLA 1UUVA 2HMOA 4QURA 4H0LD 4HM2A 2YFIA 3GTEA 3GTSA 2YVJB 1SQQE 1EZVE 2Q3WA 2CKFA 2HMKA 2NUMA 1ZRTE 1RIEA 1Q90C 2FYNC 1SJGA 4NBBD 3C0DA 3GKEA 1O7PA 4HM6A 4QDFA 2HMNA 4NBCD 4HM8A 2XSOA 1NTME 2D2CD 3L75E 4AAYB 1G8KB 1EG9A 1SQVE 1O7NA 2E4QA 2NUKA 4HM5A 1WQLA 2QJYC 2B24A 1PPJE 3L74E 4H13D 3H1HE 3BCCE 1NDOA 2GBWA 1O7HA 4HM4A 3CWBE 2GBXA 3VCPA 2E4PA 3GZXA 3GZYA 4QUQA 3EN1A 3TGUE 3EQQA 2HMMA 4HKVA 4NBFD 2QJKC 3VCAA 4PV1D 2NWFA 1SQPE 2HMJA 3H1JE 3GOBA 4NBGD 2FYUE 1ULJA 3L73E 3L70E 1PP9E 2E76D 1L0NE 2DE6D 4PD4E 4QUPA 3L71E 4HM7A 4QDCA 3H1IE 2HMLA 1JM1A 1VCKA 2QPZA 1NTZE 1O7MA 5CXMA 4HM3A 3GL0A 1VF5D 1KB9E 1NYKA 2XSHA 4P1BH 1SQBE 2A06E 4HJLA 1L0LE 3H1KE 2XRXA 1O7GA 4QCKA 2BMRA 1NU1E 2NVFA 4NBAD 4EMJB 2DE5D 3FOUA 3H1LE 5AEWA 4NBDD 4HM0A 5AEUA 4P1CH 2BMOA 4NB9D 1BE3E 3GB4A 4OGQD 3D89A 3CX5E 2I7FA 3GL2A
chains in the Genus database with same CATH topology
2BCCE 2YFLA 4AIVA 2E74D 2YFJA 3VMGD 3CXHE 2QJPC 1ULIA 1KYOE 2NVEA 2YIUC 5HL4A 3VMHD 2BMQA 4U3FE 5KLIC 5BOKA 3AZCA 1NTKE 5KKZC 1FQTA 4NBHD 1P84E 2IBZE 1VM9A 2XR8A 1O7WA 3GCEA 5KLVE 1BCCE 2E75D 2DE7D 4HM1A 4H44D 3L72E 4NBED 3DQYA 2ZT9D 4NB8D 2JZAA 1RFSA 2NVGA 4QDDA 1SQXE 1G8JB 3N0QA 1UUWA 2B1XA 3VMID 4QDFB 2JO6A 2ZYLA 1UUVA 2HMOA 4QURA 4H0LD 4HM2A 2YFIA 3GTEA 3GTSA 2YVJB 1SQQE 1EZVE 2Q3WA 2CKFA 2HMKA 2NUMA 1ZRTE 1RIEA 1Q90C 2FYNC 1SJGA 4NBBD 3C0DA 3GKEA 1O7PA 4HM6A 4QDFA 2HMNA 4NBCD 4HM8A 2XSOA 1NTME 2D2CD 3L75E 4AAYB 1G8KB 1EG9A 1SQVE 1O7NA 2E4QA 2NUKA 4HM5A 1WQLA 2QJYC 2B24A 1PPJE 3L74E 4H13D 3H1HE 3BCCE 1NDOA 2GBWA 1O7HA 4HM4A 3CWBE 2GBXA 3VCPA 2E4PA 3GZXA 3GZYA 4QUQA 3EN1A 3TGUE 3EQQA 2HMMA 4HKVA 4NBFD 2QJKC 3VCAA 4PV1D 2NWFA 1SQPE 2HMJA 3H1JE 3GOBA 4NBGD 2FYUE 1ULJA 3L73E 3L70E 1PP9E 2E76D 1L0NE 2DE6D 4PD4E 4QUPA 3L71E 4HM7A 4QDCA 3H1IE 2HMLA 1JM1A 1VCKA 2QPZA 1NTZE 1O7MA 5CXMA 4HM3A 3GL0A 1VF5D 1KB9E 1NYKA 2XSHA 4P1BH 1SQBE 2A06E 4HJLA 1L0LE 3H1KE 2XRXA 1O7GA 4QCKA 2BMRA 1NU1E 2NVFA 4NBAD 4EMJB 2DE5D 3FOUA 3H1LE 5AEWA 4NBDD 4HM0A 5AEUA 4P1CH 2BMOA 4NB9D 1BE3E 3GB4A 4OGQD 3D89A 3CX5E 2I7FA 3GL2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BCC E;  2YFL A;  4AIV A;  2E74 D;  2YFJ A;  3VMG D;  3CXH E;  2QJP C;  1ULI A;  1KYO E;  2NVE A;  2YIU C;  5HL4 A;  3VMH D;  2BMQ A;  4U3F E;  5KLI C;  5BOK A;  3AZC A;  1NTK E;  5KKZ C;  1FQT A;  4NBH D;  1P84 E;  2IBZ E;  1VM9 A;  2XR8 A;  1O7W A;  3GCE A;  5KLV E;  1BCC E;  2E75 D;  2DE7 D;  4HM1 A;  4H44 D;  3L72 E;  4NBE D;  3DQY A;  2ZT9 D;  4NB8 D;  2JZA A;  1RFS A;  2NVG A;  4QDD A;  1SQX E;  1G8J B;  3N0Q A;  1UUW A;  2B1X A;  3VMI D;  4QDF B;  2JO6 A;  2ZYL A;  1UUV A;  2HMO A;  4QUR A;  4H0L D;  4HM2 A;  2YFI A;  3GTE A;  3GTS A;  2YVJ B;  1SQQ E;  1EZV E;  2Q3W A;  2CKF A;  2HMK A;  2NUM A;  1ZRT E;  1RIE A;  1Q90 C;  2FYN C;  1SJG A;  4NBB D;  3C0D A;  3GKE A;  1O7P A;  4HM6 A;  4QDF A;  2HMN A;  4NBC D;  4HM8 A;  2XSO A;  1NTM E;  2D2C D;  3L75 E;  4AAY B;  1G8K B;  1EG9 A;  1SQV E;  1O7N A;  2E4Q A;  2NUK A;  4HM5 A;  1WQL A;  2QJY C;  2B24 A;  1PPJ E;  3L74 E;  4H13 D;  3H1H E;  3BCC E;  1NDO A;  2GBW A;  1O7H A;  4HM4 A;  3CWB E;  2GBX A;  3VCP A;  2E4P A;  3GZX A;  3GZY A;  4QUQ A;  3EN1 A;  3TGU E;  3EQQ A;  2HMM A;  4HKV A;  4NBF D;  2QJK C;  3VCA A;  4PV1 D;  2NWF A;  1SQP E;  2HMJ A;  3H1J E;  3GOB A;  4NBG D;  2FYU E;  1ULJ A;  3L73 E;  3L70 E;  1PP9 E;  2E76 D;  1L0N E;  2DE6 D;  4PD4 E;  4QUP A;  3L71 E;  4HM7 A;  4QDC A;  3H1I E;  2HML A;  1JM1 A;  1VCK A;  2QPZ A;  1NTZ E;  1O7M A;  5CXM A;  4HM3 A;  3GL0 A;  1VF5 D;  1KB9 E;  1NYK A;  2XSH A;  4P1B H;  1SQB E;  2A06 E;  4HJL A;  1L0L E;  3H1K E;  2XRX A;  1O7G A;  4QCK A;  2BMR A;  1NU1 E;  2NVF A;  4NBA D;  4EMJ B;  2DE5 D;  3FOU A;  3H1L E;  5AEW A;  4NBD D;  4HM0 A;  5AEU A;  4P1C H;  2BMO A;  4NB9 D;  1BE3 E;  3GB4 A;  4OGQ D;  3D89 A;  3CX5 E;  2I7F A;  3GL2 A; 
#chains in the Genus database with same CATH topology
 2BCC E;  2YFL A;  4AIV A;  2E74 D;  2YFJ A;  3VMG D;  3CXH E;  2QJP C;  1ULI A;  1KYO E;  2NVE A;  2YIU C;  5HL4 A;  3VMH D;  2BMQ A;  4U3F E;  5KLI C;  5BOK A;  3AZC A;  1NTK E;  5KKZ C;  1FQT A;  4NBH D;  1P84 E;  2IBZ E;  1VM9 A;  2XR8 A;  1O7W A;  3GCE A;  5KLV E;  1BCC E;  2E75 D;  2DE7 D;  4HM1 A;  4H44 D;  3L72 E;  4NBE D;  3DQY A;  2ZT9 D;  4NB8 D;  2JZA A;  1RFS A;  2NVG A;  4QDD A;  1SQX E;  1G8J B;  3N0Q A;  1UUW A;  2B1X A;  3VMI D;  4QDF B;  2JO6 A;  2ZYL A;  1UUV A;  2HMO A;  4QUR A;  4H0L D;  4HM2 A;  2YFI A;  3GTE A;  3GTS A;  2YVJ B;  1SQQ E;  1EZV E;  2Q3W A;  2CKF A;  2HMK A;  2NUM A;  1ZRT E;  1RIE A;  1Q90 C;  2FYN C;  1SJG A;  4NBB D;  3C0D A;  3GKE A;  1O7P A;  4HM6 A;  4QDF A;  2HMN A;  4NBC D;  4HM8 A;  2XSO A;  1NTM E;  2D2C D;  3L75 E;  4AAY B;  1G8K B;  1EG9 A;  1SQV E;  1O7N A;  2E4Q A;  2NUK A;  4HM5 A;  1WQL A;  2QJY C;  2B24 A;  1PPJ E;  3L74 E;  4H13 D;  3H1H E;  3BCC E;  1NDO A;  2GBW A;  1O7H A;  4HM4 A;  3CWB E;  2GBX A;  3VCP A;  2E4P A;  3GZX A;  3GZY A;  4QUQ A;  3EN1 A;  3TGU E;  3EQQ A;  2HMM A;  4HKV A;  4NBF D;  2QJK C;  3VCA A;  4PV1 D;  2NWF A;  1SQP E;  2HMJ A;  3H1J E;  3GOB A;  4NBG D;  2FYU E;  1ULJ A;  3L73 E;  3L70 E;  1PP9 E;  2E76 D;  1L0N E;  2DE6 D;  4PD4 E;  4QUP A;  3L71 E;  4HM7 A;  4QDC A;  3H1I E;  2HML A;  1JM1 A;  1VCK A;  2QPZ A;  1NTZ E;  1O7M A;  5CXM A;  4HM3 A;  3GL0 A;  1VF5 D;  1KB9 E;  1NYK A;  2XSH A;  4P1B H;  1SQB E;  2A06 E;  4HJL A;  1L0L E;  3H1K E;  2XRX A;  1O7G A;  4QCK A;  2BMR A;  1NU1 E;  2NVF A;  4NBA D;  4EMJ B;  2DE5 D;  3FOU A;  3H1L E;  5AEW A;  4NBD D;  4HM0 A;  5AEU A;  4P1C H;  2BMO A;  4NB9 D;  1BE3 E;  3GB4 A;  4OGQ D;  3D89 A;  3CX5 E;  2I7F A;  3GL2 A; 
#chains in the Genus database with same CATH homology
 2BCC E;  2YFL A;  4AIV A;  2E74 D;  2YFJ A;  3VMG D;  3CXH E;  2QJP C;  1ULI A;  1KYO E;  2NVE A;  2YIU C;  5HL4 A;  3VMH D;  2BMQ A;  4U3F E;  5KLI C;  5BOK A;  3AZC A;  1NTK E;  5KKZ C;  1FQT A;  4NBH D;  1P84 E;  2IBZ E;  1VM9 A;  2XR8 A;  1O7W A;  3GCE A;  5KLV E;  1BCC E;  2E75 D;  2DE7 D;  4HM1 A;  4H44 D;  3L72 E;  4NBE D;  3DQY A;  2ZT9 D;  4NB8 D;  2JZA A;  1RFS A;  2NVG A;  4QDD A;  1SQX E;  1G8J B;  3N0Q A;  1UUW A;  2B1X A;  3VMI D;  4QDF B;  2JO6 A;  2ZYL A;  1UUV A;  2HMO A;  4QUR A;  4H0L D;  4HM2 A;  2YFI A;  3GTE A;  3GTS A;  2YVJ B;  1SQQ E;  1EZV E;  2Q3W A;  2CKF A;  2HMK A;  2NUM A;  1ZRT E;  1RIE A;  1Q90 C;  2FYN C;  1SJG A;  4NBB D;  3C0D A;  3GKE A;  1O7P A;  4HM6 A;  4QDF A;  2HMN A;  4NBC D;  4HM8 A;  2XSO A;  1NTM E;  2D2C D;  3L75 E;  4AAY B;  1G8K B;  1EG9 A;  1SQV E;  1O7N A;  2E4Q A;  2NUK A;  4HM5 A;  1WQL A;  2QJY C;  2B24 A;  1PPJ E;  3L74 E;  4H13 D;  3H1H E;  3BCC E;  1NDO A;  2GBW A;  1O7H A;  4HM4 A;  3CWB E;  2GBX A;  3VCP A;  2E4P A;  3GZX A;  3GZY A;  4QUQ A;  3EN1 A;  3TGU E;  3EQQ A;  2HMM A;  4HKV A;  4NBF D;  2QJK C;  3VCA A;  4PV1 D;  2NWF A;  1SQP E;  2HMJ A;  3H1J E;  3GOB A;  4NBG D;  2FYU E;  1ULJ A;  3L73 E;  3L70 E;  1PP9 E;  2E76 D;  1L0N E;  2DE6 D;  4PD4 E;  4QUP A;  3L71 E;  4HM7 A;  4QDC A;  3H1I E;  2HML A;  1JM1 A;  1VCK A;  2QPZ A;  1NTZ E;  1O7M A;  5CXM A;  4HM3 A;  3GL0 A;  1VF5 D;  1KB9 E;  1NYK A;  2XSH A;  4P1B H;  1SQB E;  2A06 E;  4HJL A;  1L0L E;  3H1K E;  2XRX A;  1O7G A;  4QCK A;  2BMR A;  1NU1 E;  2NVF A;  4NBA D;  4EMJ B;  2DE5 D;  3FOU A;  3H1L E;  5AEW A;  4NBD D;  4HM0 A;  5AEU A;  4P1C H;  2BMO A;  4NB9 D;  1BE3 E;  3GB4 A;  4OGQ D;  3D89 A;  3CX5 E;  2I7F A;  3GL2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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