2DE5D

Crystal structure of the electron transfer complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
105
structure length
105
Chain Sequence
b'IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKKL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords terminal oxygenase component of carbazole
publication title Electron Transfer Complex Formation between Oxygenase and Ferredoxin Components in Rieske Nonheme Iron Oxygenase System
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 18
structure length 105
sequence length 105
chains with identical sequence E, F
ec nomenclature ec 1.14.12.-:
pdb deposition date 2006-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2de5D00
1EZVE 3GL2A 1BCCE 2NVGA 2GBXA 4HKVA 2NVEA 4QCKA 4QUQA 2HMKA 3GL0A 4AIVA 1BE3E 2A06E 2DE6D 5AEWA 3GZYA 2XR8A 1O7WA 3GTSA 4HM7A 5KLIC 4H0LD 2XSHA 1NYKA 4NBED 1KB9E 2E4PA 3N0QA 2NUKA 4HM4A 2YFJA 2BMOA 3VMID 1SQQE 1O7MA 2BMQA 2HMNA 2DE5D 2JZAA 1L0LE 2ZT9D 2NUMA 1NDOA 1SQPE 1VM9A 1EG9A 2HMMA 3GTEA 3TGUE 3L70E 5AEUA 4HM6A 1O7PA 2XSOA 1FQTA 1O7HA 4PD4E 4AAYB 3L75E 2BMRA 4EMJB 3VMHD 3H1KE 1VCKA 2QJYC 1VF5D 2XRXA 3L73E 4H13D 1UUWA 3VCAA 1NTME 3BCCE 3D89A 3GZXA 2QJKC 1JM1A 3H1JE 1O7NA 1SJGA 4NB9D 3L71E 4QUPA 1NTZE 4QDFA 2FYUE 1KYOE 4OGQD 2YFLA 4P1BH 4U3FE 3DQYA 2CKFA 3L72E 4NBAD 2YIUC 2B1XA 3L74E 1NTKE 2IBZE 5HL4A 4NBDD 3H1HE 3VCPA 2GBWA 3GCEA 3CWBE 3EQQA 4NBHD 2HMLA 1L0NE 2E76D 2E4QA 1SQVE 3GKEA 4NB8D 4NBGD 2FYNC 5KKZC 1WQLA 3CXHE 1P84E 1ULJA 2BCCE 3EN1A 1PP9E 4QDFB 3GOBA 2HMJA 2YFIA 4H44D 4QDDA 1RIEA 5CXMA 4P1CH 4NBBD 2B24A 2D2CD 2NVFA 2ZYLA 1NU1E 1SQBE 4HM5A 2QJPC 1Q90C 1PPJE 2HMOA 1G8JB 4PV1D 3H1IE 2E75D 4QDCA 4HJLA 1RFSA 1SQXE 4HM3A 5KLVE 4HM8A 2YVJB 1ZRTE 3GB4A 4HM1A 4NBCD 2DE7D 4HM2A 1ULIA 3C0DA 3CX5E 3FOUA 4HM0A 1G8KB 2NWFA 4NBFD 2QPZA 1O7GA 2Q3WA 3AZCA 4QURA 5BOKA 2E74D 2JO6A 3VMGD 2I7FA 3H1LE 1UUVA
chains in the Genus database with same CATH superfamily
1EZVE 3GL2A 1BCCE 2NVGA 2GBXA 4HKVA 2NVEA 4QCKA 4QUQA 2HMKA 3GL0A 4AIVA 1BE3E 2A06E 2DE6D 5AEWA 3GZYA 2XR8A 1O7WA 3GTSA 4HM7A 5KLIC 4H0LD 2XSHA 1NYKA 4NBED 1KB9E 2E4PA 3N0QA 2NUKA 4HM4A 2YFJA 2BMOA 3VMID 1SQQE 1O7MA 2BMQA 2HMNA 2DE5D 2JZAA 1L0LE 2ZT9D 2NUMA 1NDOA 1SQPE 1VM9A 1EG9A 2HMMA 3GTEA 3TGUE 3L70E 5AEUA 4HM6A 1O7PA 2XSOA 1FQTA 1O7HA 4PD4E 4AAYB 3L75E 2BMRA 4EMJB 3VMHD 3H1KE 1VCKA 2QJYC 1VF5D 2XRXA 3L73E 4H13D 1UUWA 3VCAA 1NTME 3BCCE 3D89A 3GZXA 2QJKC 1JM1A 3H1JE 1O7NA 1SJGA 4NB9D 3L71E 4QUPA 1NTZE 4QDFA 2FYUE 1KYOE 4OGQD 2YFLA 4P1BH 4U3FE 3DQYA 2CKFA 3L72E 4NBAD 2YIUC 2B1XA 3L74E 1NTKE 2IBZE 5HL4A 4NBDD 3H1HE 3VCPA 2GBWA 3GCEA 3CWBE 3EQQA 4NBHD 2HMLA 1L0NE 2E76D 2E4QA 1SQVE 3GKEA 4NB8D 4NBGD 2FYNC 5KKZC 1WQLA 3CXHE 1P84E 1ULJA 2BCCE 3EN1A 1PP9E 4QDFB 3GOBA 2HMJA 2YFIA 4H44D 4QDDA 1RIEA 5CXMA 4P1CH 4NBBD 2B24A 2D2CD 2NVFA 2ZYLA 1NU1E 1SQBE 4HM5A 2QJPC 1Q90C 1PPJE 2HMOA 1G8JB 4PV1D 3H1IE 2E75D 4QDCA 4HJLA 1RFSA 1SQXE 4HM3A 5KLVE 4HM8A 2YVJB 1ZRTE 3GB4A 4HM1A 4NBCD 2DE7D 4HM2A 1ULIA 3C0DA 3CX5E 3FOUA 4HM0A 1G8KB 2NWFA 4NBFD 2QPZA 1O7GA 2Q3WA 3AZCA 4QURA 5BOKA 2E74D 2JO6A 3VMGD 2I7FA 3H1LE 1UUVA
chains in the Genus database with same CATH topology
1EZVE 3GL2A 1BCCE 2NVGA 2GBXA 4HKVA 2NVEA 4QCKA 4QUQA 2HMKA 3GL0A 4AIVA 1BE3E 2A06E 2DE6D 5AEWA 3GZYA 2XR8A 1O7WA 3GTSA 4HM7A 5KLIC 4H0LD 2XSHA 1NYKA 4NBED 1KB9E 2E4PA 3N0QA 2NUKA 4HM4A 2YFJA 2BMOA 3VMID 1SQQE 1O7MA 2BMQA 2HMNA 2DE5D 2JZAA 1L0LE 2ZT9D 2NUMA 1NDOA 1SQPE 1VM9A 1EG9A 2HMMA 3GTEA 3TGUE 3L70E 5AEUA 4HM6A 1O7PA 2XSOA 1FQTA 1O7HA 4PD4E 4AAYB 3L75E 2BMRA 4EMJB 3VMHD 3H1KE 1VCKA 2QJYC 1VF5D 2XRXA 3L73E 4H13D 1UUWA 3VCAA 1NTME 3BCCE 3D89A 3GZXA 2QJKC 1JM1A 3H1JE 1O7NA 1SJGA 4NB9D 3L71E 4QUPA 1NTZE 4QDFA 2FYUE 1KYOE 4OGQD 2YFLA 4P1BH 4U3FE 3DQYA 2CKFA 3L72E 4NBAD 2YIUC 2B1XA 3L74E 1NTKE 2IBZE 5HL4A 4NBDD 3H1HE 3VCPA 2GBWA 3GCEA 3CWBE 3EQQA 4NBHD 2HMLA 1L0NE 2E76D 2E4QA 1SQVE 3GKEA 4NB8D 4NBGD 2FYNC 5KKZC 1WQLA 3CXHE 1P84E 1ULJA 2BCCE 3EN1A 1PP9E 4QDFB 3GOBA 2HMJA 2YFIA 4H44D 4QDDA 1RIEA 5CXMA 4P1CH 4NBBD 2B24A 2D2CD 2NVFA 2ZYLA 1NU1E 1SQBE 4HM5A 2QJPC 1Q90C 1PPJE 2HMOA 1G8JB 4PV1D 3H1IE 2E75D 4QDCA 4HJLA 1RFSA 1SQXE 4HM3A 5KLVE 4HM8A 2YVJB 1ZRTE 3GB4A 4HM1A 4NBCD 2DE7D 4HM2A 1ULIA 3C0DA 3CX5E 3FOUA 4HM0A 1G8KB 2NWFA 4NBFD 2QPZA 1O7GA 2Q3WA 3AZCA 4QURA 5BOKA 2E74D 2JO6A 3VMGD 2I7FA 3H1LE 1UUVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EZV E;  3GL2 A;  1BCC E;  2NVG A;  2GBX A;  4HKV A;  2NVE A;  4QCK A;  4QUQ A;  2HMK A;  3GL0 A;  4AIV A;  1BE3 E;  2A06 E;  2DE6 D;  5AEW A;  3GZY A;  2XR8 A;  1O7W A;  3GTS A;  4HM7 A;  5KLI C;  4H0L D;  2XSH A;  1NYK A;  4NBE D;  1KB9 E;  2E4P A;  3N0Q A;  2NUK A;  4HM4 A;  2YFJ A;  2BMO A;  3VMI D;  1SQQ E;  1O7M A;  2BMQ A;  2HMN A;  2DE5 D;  2JZA A;  1L0L E;  2ZT9 D;  2NUM A;  1NDO A;  1SQP E;  1VM9 A;  1EG9 A;  2HMM A;  3GTE A;  3TGU E;  3L70 E;  5AEU A;  4HM6 A;  1O7P A;  2XSO A;  1FQT A;  1O7H A;  4PD4 E;  4AAY B;  3L75 E;  2BMR A;  4EMJ B;  3VMH D;  3H1K E;  1VCK A;  2QJY C;  1VF5 D;  2XRX A;  3L73 E;  4H13 D;  1UUW A;  3VCA A;  1NTM E;  3BCC E;  3D89 A;  3GZX A;  2QJK C;  1JM1 A;  3H1J E;  1O7N A;  1SJG A;  4NB9 D;  3L71 E;  4QUP A;  1NTZ E;  4QDF A;  2FYU E;  1KYO E;  4OGQ D;  2YFL A;  4P1B H;  4U3F E;  3DQY A;  2CKF A;  3L72 E;  4NBA D;  2YIU C;  2B1X A;  3L74 E;  1NTK E;  2IBZ E;  5HL4 A;  4NBD D;  3H1H E;  3VCP A;  2GBW A;  3GCE A;  3CWB E;  3EQQ A;  4NBH D;  2HML A;  1L0N E;  2E76 D;  2E4Q A;  1SQV E;  3GKE A;  4NB8 D;  4NBG D;  2FYN C;  5KKZ C;  1WQL A;  3CXH E;  1P84 E;  1ULJ A;  2BCC E;  3EN1 A;  1PP9 E;  4QDF B;  3GOB A;  2HMJ A;  2YFI A;  4H44 D;  4QDD A;  1RIE A;  5CXM A;  4P1C H;  4NBB D;  2B24 A;  2D2C D;  2NVF A;  2ZYL A;  1NU1 E;  1SQB E;  4HM5 A;  2QJP C;  1Q90 C;  1PPJ E;  2HMO A;  1G8J B;  4PV1 D;  3H1I E;  2E75 D;  4QDC A;  4HJL A;  1RFS A;  1SQX E;  4HM3 A;  5KLV E;  4HM8 A;  2YVJ B;  1ZRT E;  3GB4 A;  4HM1 A;  4NBC D;  2DE7 D;  4HM2 A;  1ULI A;  3C0D A;  3CX5 E;  3FOU A;  4HM0 A;  1G8K B;  2NWF A;  4NBF D;  2QPZ A;  1O7G A;  2Q3W A;  3AZC A;  4QUR A;  5BOK A;  2E74 D;  2JO6 A;  3VMG D;  2I7F A;  3H1L E;  1UUV A; 
#chains in the Genus database with same CATH topology
 1EZV E;  3GL2 A;  1BCC E;  2NVG A;  2GBX A;  4HKV A;  2NVE A;  4QCK A;  4QUQ A;  2HMK A;  3GL0 A;  4AIV A;  1BE3 E;  2A06 E;  2DE6 D;  5AEW A;  3GZY A;  2XR8 A;  1O7W A;  3GTS A;  4HM7 A;  5KLI C;  4H0L D;  2XSH A;  1NYK A;  4NBE D;  1KB9 E;  2E4P A;  3N0Q A;  2NUK A;  4HM4 A;  2YFJ A;  2BMO A;  3VMI D;  1SQQ E;  1O7M A;  2BMQ A;  2HMN A;  2DE5 D;  2JZA A;  1L0L E;  2ZT9 D;  2NUM A;  1NDO A;  1SQP E;  1VM9 A;  1EG9 A;  2HMM A;  3GTE A;  3TGU E;  3L70 E;  5AEU A;  4HM6 A;  1O7P A;  2XSO A;  1FQT A;  1O7H A;  4PD4 E;  4AAY B;  3L75 E;  2BMR A;  4EMJ B;  3VMH D;  3H1K E;  1VCK A;  2QJY C;  1VF5 D;  2XRX A;  3L73 E;  4H13 D;  1UUW A;  3VCA A;  1NTM E;  3BCC E;  3D89 A;  3GZX A;  2QJK C;  1JM1 A;  3H1J E;  1O7N A;  1SJG A;  4NB9 D;  3L71 E;  4QUP A;  1NTZ E;  4QDF A;  2FYU E;  1KYO E;  4OGQ D;  2YFL A;  4P1B H;  4U3F E;  3DQY A;  2CKF A;  3L72 E;  4NBA D;  2YIU C;  2B1X A;  3L74 E;  1NTK E;  2IBZ E;  5HL4 A;  4NBD D;  3H1H E;  3VCP A;  2GBW A;  3GCE A;  3CWB E;  3EQQ A;  4NBH D;  2HML A;  1L0N E;  2E76 D;  2E4Q A;  1SQV E;  3GKE A;  4NB8 D;  4NBG D;  2FYN C;  5KKZ C;  1WQL A;  3CXH E;  1P84 E;  1ULJ A;  2BCC E;  3EN1 A;  1PP9 E;  4QDF B;  3GOB A;  2HMJ A;  2YFI A;  4H44 D;  4QDD A;  1RIE A;  5CXM A;  4P1C H;  4NBB D;  2B24 A;  2D2C D;  2NVF A;  2ZYL A;  1NU1 E;  1SQB E;  4HM5 A;  2QJP C;  1Q90 C;  1PPJ E;  2HMO A;  1G8J B;  4PV1 D;  3H1I E;  2E75 D;  4QDC A;  4HJL A;  1RFS A;  1SQX E;  4HM3 A;  5KLV E;  4HM8 A;  2YVJ B;  1ZRT E;  3GB4 A;  4HM1 A;  4NBC D;  2DE7 D;  4HM2 A;  1ULI A;  3C0D A;  3CX5 E;  3FOU A;  4HM0 A;  1G8K B;  2NWF A;  4NBF D;  2QPZ A;  1O7G A;  2Q3W A;  3AZC A;  4QUR A;  5BOK A;  2E74 D;  2JO6 A;  3VMG D;  2I7F A;  3H1L E;  1UUV A; 
#chains in the Genus database with same CATH homology
 1EZV E;  3GL2 A;  1BCC E;  2NVG A;  2GBX A;  4HKV A;  2NVE A;  4QCK A;  4QUQ A;  2HMK A;  3GL0 A;  4AIV A;  1BE3 E;  2A06 E;  2DE6 D;  5AEW A;  3GZY A;  2XR8 A;  1O7W A;  3GTS A;  4HM7 A;  5KLI C;  4H0L D;  2XSH A;  1NYK A;  4NBE D;  1KB9 E;  2E4P A;  3N0Q A;  2NUK A;  4HM4 A;  2YFJ A;  2BMO A;  3VMI D;  1SQQ E;  1O7M A;  2BMQ A;  2HMN A;  2DE5 D;  2JZA A;  1L0L E;  2ZT9 D;  2NUM A;  1NDO A;  1SQP E;  1VM9 A;  1EG9 A;  2HMM A;  3GTE A;  3TGU E;  3L70 E;  5AEU A;  4HM6 A;  1O7P A;  2XSO A;  1FQT A;  1O7H A;  4PD4 E;  4AAY B;  3L75 E;  2BMR A;  4EMJ B;  3VMH D;  3H1K E;  1VCK A;  2QJY C;  1VF5 D;  2XRX A;  3L73 E;  4H13 D;  1UUW A;  3VCA A;  1NTM E;  3BCC E;  3D89 A;  3GZX A;  2QJK C;  1JM1 A;  3H1J E;  1O7N A;  1SJG A;  4NB9 D;  3L71 E;  4QUP A;  1NTZ E;  4QDF A;  2FYU E;  1KYO E;  4OGQ D;  2YFL A;  4P1B H;  4U3F E;  3DQY A;  2CKF A;  3L72 E;  4NBA D;  2YIU C;  2B1X A;  3L74 E;  1NTK E;  2IBZ E;  5HL4 A;  4NBD D;  3H1H E;  3VCP A;  2GBW A;  3GCE A;  3CWB E;  3EQQ A;  4NBH D;  2HML A;  1L0N E;  2E76 D;  2E4Q A;  1SQV E;  3GKE A;  4NB8 D;  4NBG D;  2FYN C;  5KKZ C;  1WQL A;  3CXH E;  1P84 E;  1ULJ A;  2BCC E;  3EN1 A;  1PP9 E;  4QDF B;  3GOB A;  2HMJ A;  2YFI A;  4H44 D;  4QDD A;  1RIE A;  5CXM A;  4P1C H;  4NBB D;  2B24 A;  2D2C D;  2NVF A;  2ZYL A;  1NU1 E;  1SQB E;  4HM5 A;  2QJP C;  1Q90 C;  1PPJ E;  2HMO A;  1G8J B;  4PV1 D;  3H1I E;  2E75 D;  4QDC A;  4HJL A;  1RFS A;  1SQX E;  4HM3 A;  5KLV E;  4HM8 A;  2YVJ B;  1ZRT E;  3GB4 A;  4HM1 A;  4NBC D;  2DE7 D;  4HM2 A;  1ULI A;  3C0D A;  3CX5 E;  3FOU A;  4HM0 A;  1G8K B;  2NWF A;  4NBF D;  2QPZ A;  1O7G A;  2Q3W A;  3AZC A;  4QUR A;  5BOK A;  2E74 D;  2JO6 A;  3VMG D;  2I7F A;  3H1L E;  1UUV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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