3GCEA

Ferredoxin of carbazole 1,9a-dioxygenase from nocardioides aromaticivorans ic177
Total Genus 22
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
104
structure length
104
Chain Sequence
STPVRVATLDQLKPGVPTAFDVDGDEVMVVRDGDSVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPTALPCVLPVRAYDVVVDGTEILVAPK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Oxidoreductase
source organism Nocardioides aromaticivorans
publication title Specific Interactions between the ferredoxin and terminal oxygenase components of a class IIB Rieske nonheme iron oxygenase, carbazole 1,9a-dioxygenase.
pubmed doi rcsb
molecule keywords Ferredoxin component of carbazole 1,9a-dioxygenase
total genus 22
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2009-02-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3gceA00
2I7FA 4HM2A 4H13D 1NYKA 3BCCE 3VCAA 1G8JB 2XSOA 5AEWA 5KLVE 2A06E 2YIUC 1ZRTE 4QDFA 1NU1E 4HJLA 2QJKC 4P1CH 1EG9A 1O7MA 4HM8A 1O7WA 2QJYC 3GB4A 2DE7D 1O7PA 2XSHA 3VCPA 3H1HE 2BMQA 2HMNA 4QDDA 2FYNC 1NTKE 1JM1A 5KKZC 4PV1D 1P84E 2YFIA 2FYUE 3N0QA 4EMJB 5BOKA 1G8KB 1EZVE 1L0NE 2E75D 3L71E 1SQQE 2HMOA 3GL2A 3CXHE 4AIVA 2E4QA 4QUPA 2NVFA 1VM9A 4HM3A 1WQLA 1O7HA 1FQTA 2E4PA 2JO6A 4NBBD 1UUVA 2B1XA 2HMKA 3DQYA 2NVGA 4H44D 4HM0A 2QPZA 1SQBE 4QURA 1NTZE 1RFSA 2D2CD 2BMOA 4HKVA 2NVEA 3H1KE 3H1LE 2E76D 3VMID 2YFJA 2B24A 2CKFA 4NB9D 1NDOA 4HM7A 3EN1A 4NBED 4NBGD 2IBZE 4AAYB 2QJPC 5KLIC 2DE5D 4P1BH 4HM6A 1BCCE 3D89A 3L70E 4H0LD 1SQVE 2HMMA 2JZAA 1O7NA 1SQXE 3GCEA 3GKEA 4HM4A 5CXMA 3L72E 1NTME 2XR8A 2BMRA 4NBAD 4NBDD 4QDCA 3TGUE 3VMGD 2GBXA 3GTEA 3L74E 4NBCD 1SQPE 2HMJA 4HM1A 3VMHD 2E74D 3GL0A 2NUKA 3L73E 3GZYA 4PD4E 1ULIA 1VF5D 2GBWA 2YVJB 1VCKA 3H1JE 4HM5A 2NUMA 2Q3WA 5HL4A 3AZCA 1KB9E 2ZT9D 4NB8D 4NBFD 1KYOE 3EQQA 3FOUA 1Q90C 3GZXA 1ULJA 1RIEA 1PPJE 2DE6D 3CX5E 3GOBA 4NBHD 2BCCE 5AEUA 1O7GA 3CWBE 1L0LE 1SJGA 2ZYLA 3GTSA 2HMLA 4U3FE 2YFLA 3L75E 4QCKA 4QUQA 3C0DA 1UUWA 3H1IE 1PP9E 2NWFA 2XRXA 4OGQD 4QDFB 1BE3E
chains in the Genus database with same CATH superfamily
2I7FA 4HM2A 4H13D 1NYKA 3BCCE 3VCAA 1G8JB 2XSOA 5AEWA 5KLVE 2A06E 2YIUC 1ZRTE 4QDFA 1NU1E 4HJLA 2QJKC 4P1CH 1EG9A 1O7MA 4HM8A 1O7WA 2QJYC 3GB4A 2DE7D 1O7PA 2XSHA 3VCPA 3H1HE 2BMQA 2HMNA 4QDDA 2FYNC 1NTKE 1JM1A 5KKZC 4PV1D 1P84E 2YFIA 2FYUE 3N0QA 4EMJB 5BOKA 1G8KB 1EZVE 1L0NE 2E75D 3L71E 1SQQE 2HMOA 3GL2A 3CXHE 4AIVA 2E4QA 4QUPA 2NVFA 1VM9A 4HM3A 1WQLA 1O7HA 1FQTA 2E4PA 2JO6A 4NBBD 1UUVA 2B1XA 2HMKA 3DQYA 2NVGA 4H44D 4HM0A 2QPZA 1SQBE 4QURA 1NTZE 1RFSA 2D2CD 2BMOA 4HKVA 2NVEA 3H1KE 3H1LE 2E76D 3VMID 2YFJA 2B24A 2CKFA 4NB9D 1NDOA 4HM7A 3EN1A 4NBED 4NBGD 2IBZE 4AAYB 2QJPC 5KLIC 2DE5D 4P1BH 4HM6A 1BCCE 3D89A 3L70E 4H0LD 1SQVE 2HMMA 2JZAA 1O7NA 1SQXE 3GCEA 3GKEA 4HM4A 5CXMA 3L72E 1NTME 2XR8A 2BMRA 4NBAD 4NBDD 4QDCA 3TGUE 3VMGD 2GBXA 3GTEA 3L74E 4NBCD 1SQPE 2HMJA 4HM1A 3VMHD 2E74D 3GL0A 2NUKA 3L73E 3GZYA 4PD4E 1ULIA 1VF5D 2GBWA 2YVJB 1VCKA 3H1JE 4HM5A 2NUMA 2Q3WA 5HL4A 3AZCA 1KB9E 2ZT9D 4NB8D 4NBFD 1KYOE 3EQQA 3FOUA 1Q90C 3GZXA 1ULJA 1RIEA 1PPJE 2DE6D 3CX5E 3GOBA 4NBHD 2BCCE 5AEUA 1O7GA 3CWBE 1L0LE 1SJGA 2ZYLA 3GTSA 2HMLA 4U3FE 2YFLA 3L75E 4QCKA 4QUQA 3C0DA 1UUWA 3H1IE 1PP9E 2NWFA 2XRXA 4OGQD 4QDFB 1BE3E
chains in the Genus database with same CATH topology
2I7FA 4HM2A 4H13D 1NYKA 3BCCE 3VCAA 1G8JB 2XSOA 5AEWA 5KLVE 2A06E 2YIUC 1ZRTE 4QDFA 1NU1E 4HJLA 2QJKC 4P1CH 1EG9A 1O7MA 4HM8A 1O7WA 2QJYC 3GB4A 2DE7D 1O7PA 2XSHA 3VCPA 3H1HE 2BMQA 2HMNA 4QDDA 2FYNC 1NTKE 1JM1A 5KKZC 4PV1D 1P84E 2YFIA 2FYUE 3N0QA 4EMJB 5BOKA 1G8KB 1EZVE 1L0NE 2E75D 3L71E 1SQQE 2HMOA 3GL2A 3CXHE 4AIVA 2E4QA 4QUPA 2NVFA 1VM9A 4HM3A 1WQLA 1O7HA 1FQTA 2E4PA 2JO6A 4NBBD 1UUVA 2B1XA 2HMKA 3DQYA 2NVGA 4H44D 4HM0A 2QPZA 1SQBE 4QURA 1NTZE 1RFSA 2D2CD 2BMOA 4HKVA 2NVEA 3H1KE 3H1LE 2E76D 3VMID 2YFJA 2B24A 2CKFA 4NB9D 1NDOA 4HM7A 3EN1A 4NBED 4NBGD 2IBZE 4AAYB 2QJPC 5KLIC 2DE5D 4P1BH 4HM6A 1BCCE 3D89A 3L70E 4H0LD 1SQVE 2HMMA 2JZAA 1O7NA 1SQXE 3GCEA 3GKEA 4HM4A 5CXMA 3L72E 1NTME 2XR8A 2BMRA 4NBAD 4NBDD 4QDCA 3TGUE 3VMGD 2GBXA 3GTEA 3L74E 4NBCD 1SQPE 2HMJA 4HM1A 3VMHD 2E74D 3GL0A 2NUKA 3L73E 3GZYA 4PD4E 1ULIA 1VF5D 2GBWA 2YVJB 1VCKA 3H1JE 4HM5A 2NUMA 2Q3WA 5HL4A 3AZCA 1KB9E 2ZT9D 4NB8D 4NBFD 1KYOE 3EQQA 3FOUA 1Q90C 3GZXA 1ULJA 1RIEA 1PPJE 2DE6D 3CX5E 3GOBA 4NBHD 2BCCE 5AEUA 1O7GA 3CWBE 1L0LE 1SJGA 2ZYLA 3GTSA 2HMLA 4U3FE 2YFLA 3L75E 4QCKA 4QUQA 3C0DA 1UUWA 3H1IE 1PP9E 2NWFA 2XRXA 4OGQD 4QDFB 1BE3E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2I7F A;  4HM2 A;  4H13 D;  1NYK A;  3BCC E;  3VCA A;  1G8J B;  2XSO A;  5AEW A;  5KLV E;  2A06 E;  2YIU C;  1ZRT E;  4QDF A;  1NU1 E;  4HJL A;  2QJK C;  4P1C H;  1EG9 A;  1O7M A;  4HM8 A;  1O7W A;  2QJY C;  3GB4 A;  2DE7 D;  1O7P A;  2XSH A;  3VCP A;  3H1H E;  2BMQ A;  2HMN A;  4QDD A;  2FYN C;  1NTK E;  1JM1 A;  5KKZ C;  4PV1 D;  1P84 E;  2YFI A;  2FYU E;  3N0Q A;  4EMJ B;  5BOK A;  1G8K B;  1EZV E;  1L0N E;  2E75 D;  3L71 E;  1SQQ E;  2HMO A;  3GL2 A;  3CXH E;  4AIV A;  2E4Q A;  4QUP A;  2NVF A;  1VM9 A;  4HM3 A;  1WQL A;  1O7H A;  1FQT A;  2E4P A;  2JO6 A;  4NBB D;  1UUV A;  2B1X A;  2HMK A;  3DQY A;  2NVG A;  4H44 D;  4HM0 A;  2QPZ A;  1SQB E;  4QUR A;  1NTZ E;  1RFS A;  2D2C D;  2BMO A;  4HKV A;  2NVE A;  3H1K E;  3H1L E;  2E76 D;  3VMI D;  2YFJ A;  2B24 A;  2CKF A;  4NB9 D;  1NDO A;  4HM7 A;  3EN1 A;  4NBE D;  4NBG D;  2IBZ E;  4AAY B;  2QJP C;  5KLI C;  2DE5 D;  4P1B H;  4HM6 A;  1BCC E;  3D89 A;  3L70 E;  4H0L D;  1SQV E;  2HMM A;  2JZA A;  1O7N A;  1SQX E;  3GCE A;  3GKE A;  4HM4 A;  5CXM A;  3L72 E;  1NTM E;  2XR8 A;  2BMR A;  4NBA D;  4NBD D;  4QDC A;  3TGU E;  3VMG D;  2GBX A;  3GTE A;  3L74 E;  4NBC D;  1SQP E;  2HMJ A;  4HM1 A;  3VMH D;  2E74 D;  3GL0 A;  2NUK A;  3L73 E;  3GZY A;  4PD4 E;  1ULI A;  1VF5 D;  2GBW A;  2YVJ B;  1VCK A;  3H1J E;  4HM5 A;  2NUM A;  2Q3W A;  5HL4 A;  3AZC A;  1KB9 E;  2ZT9 D;  4NB8 D;  4NBF D;  1KYO E;  3EQQ A;  3FOU A;  1Q90 C;  3GZX A;  1ULJ A;  1RIE A;  1PPJ E;  2DE6 D;  3CX5 E;  3GOB A;  4NBH D;  2BCC E;  5AEU A;  1O7G A;  3CWB E;  1L0L E;  1SJG A;  2ZYL A;  3GTS A;  2HML A;  4U3F E;  2YFL A;  3L75 E;  4QCK A;  4QUQ A;  3C0D A;  1UUW A;  3H1I E;  1PP9 E;  2NWF A;  2XRX A;  4OGQ D;  4QDF B;  1BE3 E; 
#chains in the Genus database with same CATH topology
 2I7F A;  4HM2 A;  4H13 D;  1NYK A;  3BCC E;  3VCA A;  1G8J B;  2XSO A;  5AEW A;  5KLV E;  2A06 E;  2YIU C;  1ZRT E;  4QDF A;  1NU1 E;  4HJL A;  2QJK C;  4P1C H;  1EG9 A;  1O7M A;  4HM8 A;  1O7W A;  2QJY C;  3GB4 A;  2DE7 D;  1O7P A;  2XSH A;  3VCP A;  3H1H E;  2BMQ A;  2HMN A;  4QDD A;  2FYN C;  1NTK E;  1JM1 A;  5KKZ C;  4PV1 D;  1P84 E;  2YFI A;  2FYU E;  3N0Q A;  4EMJ B;  5BOK A;  1G8K B;  1EZV E;  1L0N E;  2E75 D;  3L71 E;  1SQQ E;  2HMO A;  3GL2 A;  3CXH E;  4AIV A;  2E4Q A;  4QUP A;  2NVF A;  1VM9 A;  4HM3 A;  1WQL A;  1O7H A;  1FQT A;  2E4P A;  2JO6 A;  4NBB D;  1UUV A;  2B1X A;  2HMK A;  3DQY A;  2NVG A;  4H44 D;  4HM0 A;  2QPZ A;  1SQB E;  4QUR A;  1NTZ E;  1RFS A;  2D2C D;  2BMO A;  4HKV A;  2NVE A;  3H1K E;  3H1L E;  2E76 D;  3VMI D;  2YFJ A;  2B24 A;  2CKF A;  4NB9 D;  1NDO A;  4HM7 A;  3EN1 A;  4NBE D;  4NBG D;  2IBZ E;  4AAY B;  2QJP C;  5KLI C;  2DE5 D;  4P1B H;  4HM6 A;  1BCC E;  3D89 A;  3L70 E;  4H0L D;  1SQV E;  2HMM A;  2JZA A;  1O7N A;  1SQX E;  3GCE A;  3GKE A;  4HM4 A;  5CXM A;  3L72 E;  1NTM E;  2XR8 A;  2BMR A;  4NBA D;  4NBD D;  4QDC A;  3TGU E;  3VMG D;  2GBX A;  3GTE A;  3L74 E;  4NBC D;  1SQP E;  2HMJ A;  4HM1 A;  3VMH D;  2E74 D;  3GL0 A;  2NUK A;  3L73 E;  3GZY A;  4PD4 E;  1ULI A;  1VF5 D;  2GBW A;  2YVJ B;  1VCK A;  3H1J E;  4HM5 A;  2NUM A;  2Q3W A;  5HL4 A;  3AZC A;  1KB9 E;  2ZT9 D;  4NB8 D;  4NBF D;  1KYO E;  3EQQ A;  3FOU A;  1Q90 C;  3GZX A;  1ULJ A;  1RIE A;  1PPJ E;  2DE6 D;  3CX5 E;  3GOB A;  4NBH D;  2BCC E;  5AEU A;  1O7G A;  3CWB E;  1L0L E;  1SJG A;  2ZYL A;  3GTS A;  2HML A;  4U3F E;  2YFL A;  3L75 E;  4QCK A;  4QUQ A;  3C0D A;  1UUW A;  3H1I E;  1PP9 E;  2NWF A;  2XRX A;  4OGQ D;  4QDF B;  1BE3 E; 
#chains in the Genus database with same CATH homology
 2I7F A;  4HM2 A;  4H13 D;  1NYK A;  3BCC E;  3VCA A;  1G8J B;  2XSO A;  5AEW A;  5KLV E;  2A06 E;  2YIU C;  1ZRT E;  4QDF A;  1NU1 E;  4HJL A;  2QJK C;  4P1C H;  1EG9 A;  1O7M A;  4HM8 A;  1O7W A;  2QJY C;  3GB4 A;  2DE7 D;  1O7P A;  2XSH A;  3VCP A;  3H1H E;  2BMQ A;  2HMN A;  4QDD A;  2FYN C;  1NTK E;  1JM1 A;  5KKZ C;  4PV1 D;  1P84 E;  2YFI A;  2FYU E;  3N0Q A;  4EMJ B;  5BOK A;  1G8K B;  1EZV E;  1L0N E;  2E75 D;  3L71 E;  1SQQ E;  2HMO A;  3GL2 A;  3CXH E;  4AIV A;  2E4Q A;  4QUP A;  2NVF A;  1VM9 A;  4HM3 A;  1WQL A;  1O7H A;  1FQT A;  2E4P A;  2JO6 A;  4NBB D;  1UUV A;  2B1X A;  2HMK A;  3DQY A;  2NVG A;  4H44 D;  4HM0 A;  2QPZ A;  1SQB E;  4QUR A;  1NTZ E;  1RFS A;  2D2C D;  2BMO A;  4HKV A;  2NVE A;  3H1K E;  3H1L E;  2E76 D;  3VMI D;  2YFJ A;  2B24 A;  2CKF A;  4NB9 D;  1NDO A;  4HM7 A;  3EN1 A;  4NBE D;  4NBG D;  2IBZ E;  4AAY B;  2QJP C;  5KLI C;  2DE5 D;  4P1B H;  4HM6 A;  1BCC E;  3D89 A;  3L70 E;  4H0L D;  1SQV E;  2HMM A;  2JZA A;  1O7N A;  1SQX E;  3GCE A;  3GKE A;  4HM4 A;  5CXM A;  3L72 E;  1NTM E;  2XR8 A;  2BMR A;  4NBA D;  4NBD D;  4QDC A;  3TGU E;  3VMG D;  2GBX A;  3GTE A;  3L74 E;  4NBC D;  1SQP E;  2HMJ A;  4HM1 A;  3VMH D;  2E74 D;  3GL0 A;  2NUK A;  3L73 E;  3GZY A;  4PD4 E;  1ULI A;  1VF5 D;  2GBW A;  2YVJ B;  1VCK A;  3H1J E;  4HM5 A;  2NUM A;  2Q3W A;  5HL4 A;  3AZC A;  1KB9 E;  2ZT9 D;  4NB8 D;  4NBF D;  1KYO E;  3EQQ A;  3FOU A;  1Q90 C;  3GZX A;  1ULJ A;  1RIE A;  1PPJ E;  2DE6 D;  3CX5 E;  3GOB A;  4NBH D;  2BCC E;  5AEU A;  1O7G A;  3CWB E;  1L0L E;  1SJG A;  2ZYL A;  3GTS A;  2HML A;  4U3F E;  2YFL A;  3L75 E;  4QCK A;  4QUQ A;  3C0D A;  1UUW A;  3H1I E;  1PP9 E;  2NWF A;  2XRX A;  4OGQ D;  4QDF B;  1BE3 E; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...