3DQYA

Crystal structure of toluene 2,3-dioxygenase ferredoxin
Total Genus 18
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
106
structure length
105
Chain Sequence
TWTYILRQGDLPPGEMQRYEGGPEPVMVCNVDGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFVRTGKVKALPACKPIKVFPIKVEGDEVHVDLDNGELK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Oxidoreductase
source organism Pseudomonas putida
publication title Structures of the multicomponent Rieske non-heme iron toluene 2,3-dioxygenase enzyme system
pubmed doi rcsb
molecule keywords Toluene 1,2-dioxygenase system ferredoxin subunit
total genus 18
structure length 105
sequence length 106
ec nomenclature
pdb deposition date 2008-07-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3dqyA00
2HMLA 3AZCA 2E76D 5AEWA 1G8KB 2YVJB 1NTKE 1SQXE 3CX5E 1VCKA 2E4PA 4HM8A 3CWBE 2E4QA 2XSHA 4NBAD 2NVFA 1VM9A 5KLVE 1SQBE 4AAYB 4HM7A 2IBZE 2XR8A 5KKZC 2BCCE 1SQVE 2YFIA 1NYKA 4HJLA 1JM1A 2NVEA 1G8JB 1L0NE 1ULIA 2NUKA 2YFLA 2YIUC 3L71E 4QDFB 1SQPE 4OGQD 4HM0A 3C0DA 3DQYA 2D2CD 2BMQA 3H1JE 3VCPA 1EZVE 4HM5A 3GCEA 3EN1A 2HMMA 2YFJA 3H1KE 1RFSA 2Q3WA 1WQLA 4HKVA 4NBFD 3VMGD 1BE3E 1O7WA 1VF5D 4H13D 1FQTA 4NBHD 2QJKC 1PP9E 1O7HA 1O7GA 2XSOA 2BMOA 2HMJA 3EQQA 4U3FE 1PPJE 1EG9A 1L0LE 3L72E 4QCKA 2ZT9D 1NTME 4NBED 2FYNC 5BOKA 4P1BH 2A06E 2QJPC 2NWFA 4H44D 3L74E 2XRXA 1O7MA 3VMID 1RIEA 5KLIC 4QURA 3TGUE 2JO6A 4NB9D 3GL2A 2DE6D 4NBBD 4NB8D 1NTZE 4AIVA 3GOBA 4PD4E 4HM1A 2DE5D 2HMOA 1Q90C 3FOUA 4EMJB 4HM3A 1NU1E 1SQQE 3L75E 1NDOA 4QDCA 2B1XA 3H1LE 5AEUA 4QUPA 4NBGD 3D89A 2FYUE 2HMKA 1UUVA 2CKFA 4NBCD 3L70E 1ZRTE 3GTEA 2B24A 2NVGA 2GBXA 2HMNA 2DE7D 3GZYA 4P1CH 1KB9E 4QDDA 4HM6A 1BCCE 2QJYC 2ZYLA 3GB4A 2E74D 3H1IE 3GL0A 5HL4A 4QUQA 4PV1D 3VMHD 1O7NA 3GKEA 3GTSA 1P84E 1O7PA 4QDFA 1UUWA 2BMRA 3BCCE 2JZAA 4HM2A 3GZXA 1KYOE 3L73E 1SJGA 2QPZA 3VCAA 2GBWA 3CXHE 4NBDD 2NUMA 2E75D 4H0LD 1ULJA 2I7FA 3N0QA 5CXMA 4HM4A 3H1HE
chains in the Genus database with same CATH superfamily
2HMLA 3AZCA 2E76D 5AEWA 1G8KB 2YVJB 1NTKE 1SQXE 3CX5E 1VCKA 2E4PA 4HM8A 3CWBE 2E4QA 2XSHA 4NBAD 2NVFA 1VM9A 5KLVE 1SQBE 4AAYB 4HM7A 2IBZE 2XR8A 5KKZC 2BCCE 1SQVE 2YFIA 1NYKA 4HJLA 1JM1A 2NVEA 1G8JB 1L0NE 1ULIA 2NUKA 2YFLA 2YIUC 3L71E 4QDFB 1SQPE 4OGQD 4HM0A 3C0DA 3DQYA 2D2CD 2BMQA 3H1JE 3VCPA 1EZVE 4HM5A 3GCEA 3EN1A 2HMMA 2YFJA 3H1KE 1RFSA 2Q3WA 1WQLA 4HKVA 4NBFD 3VMGD 1BE3E 1O7WA 1VF5D 4H13D 1FQTA 4NBHD 2QJKC 1PP9E 1O7HA 1O7GA 2XSOA 2BMOA 2HMJA 3EQQA 4U3FE 1PPJE 1EG9A 1L0LE 3L72E 4QCKA 2ZT9D 1NTME 4NBED 2FYNC 5BOKA 4P1BH 2A06E 2QJPC 2NWFA 4H44D 3L74E 2XRXA 1O7MA 3VMID 1RIEA 5KLIC 4QURA 3TGUE 2JO6A 4NB9D 3GL2A 2DE6D 4NBBD 4NB8D 1NTZE 4AIVA 3GOBA 4PD4E 4HM1A 2DE5D 2HMOA 1Q90C 3FOUA 4EMJB 4HM3A 1NU1E 1SQQE 3L75E 1NDOA 4QDCA 2B1XA 3H1LE 5AEUA 4QUPA 4NBGD 3D89A 2FYUE 2HMKA 1UUVA 2CKFA 4NBCD 3L70E 1ZRTE 3GTEA 2B24A 2NVGA 2GBXA 2HMNA 2DE7D 3GZYA 4P1CH 1KB9E 4QDDA 4HM6A 1BCCE 2QJYC 2ZYLA 3GB4A 2E74D 3H1IE 3GL0A 5HL4A 4QUQA 4PV1D 3VMHD 1O7NA 3GKEA 3GTSA 1P84E 1O7PA 4QDFA 1UUWA 2BMRA 3BCCE 2JZAA 4HM2A 3GZXA 1KYOE 3L73E 1SJGA 2QPZA 3VCAA 2GBWA 3CXHE 4NBDD 2NUMA 2E75D 4H0LD 1ULJA 2I7FA 3N0QA 5CXMA 4HM4A 3H1HE
chains in the Genus database with same CATH topology
2HMLA 3AZCA 2E76D 5AEWA 1G8KB 2YVJB 1NTKE 1SQXE 3CX5E 1VCKA 2E4PA 4HM8A 3CWBE 2E4QA 2XSHA 4NBAD 2NVFA 1VM9A 5KLVE 1SQBE 4AAYB 4HM7A 2IBZE 2XR8A 5KKZC 2BCCE 1SQVE 2YFIA 1NYKA 4HJLA 1JM1A 2NVEA 1G8JB 1L0NE 1ULIA 2NUKA 2YFLA 2YIUC 3L71E 4QDFB 1SQPE 4OGQD 4HM0A 3C0DA 3DQYA 2D2CD 2BMQA 3H1JE 3VCPA 1EZVE 4HM5A 3GCEA 3EN1A 2HMMA 2YFJA 3H1KE 1RFSA 2Q3WA 1WQLA 4HKVA 4NBFD 3VMGD 1BE3E 1O7WA 1VF5D 4H13D 1FQTA 4NBHD 2QJKC 1PP9E 1O7HA 1O7GA 2XSOA 2BMOA 2HMJA 3EQQA 4U3FE 1PPJE 1EG9A 1L0LE 3L72E 4QCKA 2ZT9D 1NTME 4NBED 2FYNC 5BOKA 4P1BH 2A06E 2QJPC 2NWFA 4H44D 3L74E 2XRXA 1O7MA 3VMID 1RIEA 5KLIC 4QURA 3TGUE 2JO6A 4NB9D 3GL2A 2DE6D 4NBBD 4NB8D 1NTZE 4AIVA 3GOBA 4PD4E 4HM1A 2DE5D 2HMOA 1Q90C 3FOUA 4EMJB 4HM3A 1NU1E 1SQQE 3L75E 1NDOA 4QDCA 2B1XA 3H1LE 5AEUA 4QUPA 4NBGD 3D89A 2FYUE 2HMKA 1UUVA 2CKFA 4NBCD 3L70E 1ZRTE 3GTEA 2B24A 2NVGA 2GBXA 2HMNA 2DE7D 3GZYA 4P1CH 1KB9E 4QDDA 4HM6A 1BCCE 2QJYC 2ZYLA 3GB4A 2E74D 3H1IE 3GL0A 5HL4A 4QUQA 4PV1D 3VMHD 1O7NA 3GKEA 3GTSA 1P84E 1O7PA 4QDFA 1UUWA 2BMRA 3BCCE 2JZAA 4HM2A 3GZXA 1KYOE 3L73E 1SJGA 2QPZA 3VCAA 2GBWA 3CXHE 4NBDD 2NUMA 2E75D 4H0LD 1ULJA 2I7FA 3N0QA 5CXMA 4HM4A 3H1HE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HML A;  3AZC A;  2E76 D;  5AEW A;  1G8K B;  2YVJ B;  1NTK E;  1SQX E;  3CX5 E;  1VCK A;  2E4P A;  4HM8 A;  3CWB E;  2E4Q A;  2XSH A;  4NBA D;  2NVF A;  1VM9 A;  5KLV E;  1SQB E;  4AAY B;  4HM7 A;  2IBZ E;  2XR8 A;  5KKZ C;  2BCC E;  1SQV E;  2YFI A;  1NYK A;  4HJL A;  1JM1 A;  2NVE A;  1G8J B;  1L0N E;  1ULI A;  2NUK A;  2YFL A;  2YIU C;  3L71 E;  4QDF B;  1SQP E;  4OGQ D;  4HM0 A;  3C0D A;  3DQY A;  2D2C D;  2BMQ A;  3H1J E;  3VCP A;  1EZV E;  4HM5 A;  3GCE A;  3EN1 A;  2HMM A;  2YFJ A;  3H1K E;  1RFS A;  2Q3W A;  1WQL A;  4HKV A;  4NBF D;  3VMG D;  1BE3 E;  1O7W A;  1VF5 D;  4H13 D;  1FQT A;  4NBH D;  2QJK C;  1PP9 E;  1O7H A;  1O7G A;  2XSO A;  2BMO A;  2HMJ A;  3EQQ A;  4U3F E;  1PPJ E;  1EG9 A;  1L0L E;  3L72 E;  4QCK A;  2ZT9 D;  1NTM E;  4NBE D;  2FYN C;  5BOK A;  4P1B H;  2A06 E;  2QJP C;  2NWF A;  4H44 D;  3L74 E;  2XRX A;  1O7M A;  3VMI D;  1RIE A;  5KLI C;  4QUR A;  3TGU E;  2JO6 A;  4NB9 D;  3GL2 A;  2DE6 D;  4NBB D;  4NB8 D;  1NTZ E;  4AIV A;  3GOB A;  4PD4 E;  4HM1 A;  2DE5 D;  2HMO A;  1Q90 C;  3FOU A;  4EMJ B;  4HM3 A;  1NU1 E;  1SQQ E;  3L75 E;  1NDO A;  4QDC A;  2B1X A;  3H1L E;  5AEU A;  4QUP A;  4NBG D;  3D89 A;  2FYU E;  2HMK A;  1UUV A;  2CKF A;  4NBC D;  3L70 E;  1ZRT E;  3GTE A;  2B24 A;  2NVG A;  2GBX A;  2HMN A;  2DE7 D;  3GZY A;  4P1C H;  1KB9 E;  4QDD A;  4HM6 A;  1BCC E;  2QJY C;  2ZYL A;  3GB4 A;  2E74 D;  3H1I E;  3GL0 A;  5HL4 A;  4QUQ A;  4PV1 D;  3VMH D;  1O7N A;  3GKE A;  3GTS A;  1P84 E;  1O7P A;  4QDF A;  1UUW A;  2BMR A;  3BCC E;  2JZA A;  4HM2 A;  3GZX A;  1KYO E;  3L73 E;  1SJG A;  2QPZ A;  3VCA A;  2GBW A;  3CXH E;  4NBD D;  2NUM A;  2E75 D;  4H0L D;  1ULJ A;  2I7F A;  3N0Q A;  5CXM A;  4HM4 A;  3H1H E; 
#chains in the Genus database with same CATH topology
 2HML A;  3AZC A;  2E76 D;  5AEW A;  1G8K B;  2YVJ B;  1NTK E;  1SQX E;  3CX5 E;  1VCK A;  2E4P A;  4HM8 A;  3CWB E;  2E4Q A;  2XSH A;  4NBA D;  2NVF A;  1VM9 A;  5KLV E;  1SQB E;  4AAY B;  4HM7 A;  2IBZ E;  2XR8 A;  5KKZ C;  2BCC E;  1SQV E;  2YFI A;  1NYK A;  4HJL A;  1JM1 A;  2NVE A;  1G8J B;  1L0N E;  1ULI A;  2NUK A;  2YFL A;  2YIU C;  3L71 E;  4QDF B;  1SQP E;  4OGQ D;  4HM0 A;  3C0D A;  3DQY A;  2D2C D;  2BMQ A;  3H1J E;  3VCP A;  1EZV E;  4HM5 A;  3GCE A;  3EN1 A;  2HMM A;  2YFJ A;  3H1K E;  1RFS A;  2Q3W A;  1WQL A;  4HKV A;  4NBF D;  3VMG D;  1BE3 E;  1O7W A;  1VF5 D;  4H13 D;  1FQT A;  4NBH D;  2QJK C;  1PP9 E;  1O7H A;  1O7G A;  2XSO A;  2BMO A;  2HMJ A;  3EQQ A;  4U3F E;  1PPJ E;  1EG9 A;  1L0L E;  3L72 E;  4QCK A;  2ZT9 D;  1NTM E;  4NBE D;  2FYN C;  5BOK A;  4P1B H;  2A06 E;  2QJP C;  2NWF A;  4H44 D;  3L74 E;  2XRX A;  1O7M A;  3VMI D;  1RIE A;  5KLI C;  4QUR A;  3TGU E;  2JO6 A;  4NB9 D;  3GL2 A;  2DE6 D;  4NBB D;  4NB8 D;  1NTZ E;  4AIV A;  3GOB A;  4PD4 E;  4HM1 A;  2DE5 D;  2HMO A;  1Q90 C;  3FOU A;  4EMJ B;  4HM3 A;  1NU1 E;  1SQQ E;  3L75 E;  1NDO A;  4QDC A;  2B1X A;  3H1L E;  5AEU A;  4QUP A;  4NBG D;  3D89 A;  2FYU E;  2HMK A;  1UUV A;  2CKF A;  4NBC D;  3L70 E;  1ZRT E;  3GTE A;  2B24 A;  2NVG A;  2GBX A;  2HMN A;  2DE7 D;  3GZY A;  4P1C H;  1KB9 E;  4QDD A;  4HM6 A;  1BCC E;  2QJY C;  2ZYL A;  3GB4 A;  2E74 D;  3H1I E;  3GL0 A;  5HL4 A;  4QUQ A;  4PV1 D;  3VMH D;  1O7N A;  3GKE A;  3GTS A;  1P84 E;  1O7P A;  4QDF A;  1UUW A;  2BMR A;  3BCC E;  2JZA A;  4HM2 A;  3GZX A;  1KYO E;  3L73 E;  1SJG A;  2QPZ A;  3VCA A;  2GBW A;  3CXH E;  4NBD D;  2NUM A;  2E75 D;  4H0L D;  1ULJ A;  2I7F A;  3N0Q A;  5CXM A;  4HM4 A;  3H1H E; 
#chains in the Genus database with same CATH homology
 2HML A;  3AZC A;  2E76 D;  5AEW A;  1G8K B;  2YVJ B;  1NTK E;  1SQX E;  3CX5 E;  1VCK A;  2E4P A;  4HM8 A;  3CWB E;  2E4Q A;  2XSH A;  4NBA D;  2NVF A;  1VM9 A;  5KLV E;  1SQB E;  4AAY B;  4HM7 A;  2IBZ E;  2XR8 A;  5KKZ C;  2BCC E;  1SQV E;  2YFI A;  1NYK A;  4HJL A;  1JM1 A;  2NVE A;  1G8J B;  1L0N E;  1ULI A;  2NUK A;  2YFL A;  2YIU C;  3L71 E;  4QDF B;  1SQP E;  4OGQ D;  4HM0 A;  3C0D A;  3DQY A;  2D2C D;  2BMQ A;  3H1J E;  3VCP A;  1EZV E;  4HM5 A;  3GCE A;  3EN1 A;  2HMM A;  2YFJ A;  3H1K E;  1RFS A;  2Q3W A;  1WQL A;  4HKV A;  4NBF D;  3VMG D;  1BE3 E;  1O7W A;  1VF5 D;  4H13 D;  1FQT A;  4NBH D;  2QJK C;  1PP9 E;  1O7H A;  1O7G A;  2XSO A;  2BMO A;  2HMJ A;  3EQQ A;  4U3F E;  1PPJ E;  1EG9 A;  1L0L E;  3L72 E;  4QCK A;  2ZT9 D;  1NTM E;  4NBE D;  2FYN C;  5BOK A;  4P1B H;  2A06 E;  2QJP C;  2NWF A;  4H44 D;  3L74 E;  2XRX A;  1O7M A;  3VMI D;  1RIE A;  5KLI C;  4QUR A;  3TGU E;  2JO6 A;  4NB9 D;  3GL2 A;  2DE6 D;  4NBB D;  4NB8 D;  1NTZ E;  4AIV A;  3GOB A;  4PD4 E;  4HM1 A;  2DE5 D;  2HMO A;  1Q90 C;  3FOU A;  4EMJ B;  4HM3 A;  1NU1 E;  1SQQ E;  3L75 E;  1NDO A;  4QDC A;  2B1X A;  3H1L E;  5AEU A;  4QUP A;  4NBG D;  3D89 A;  2FYU E;  2HMK A;  1UUV A;  2CKF A;  4NBC D;  3L70 E;  1ZRT E;  3GTE A;  2B24 A;  2NVG A;  2GBX A;  2HMN A;  2DE7 D;  3GZY A;  4P1C H;  1KB9 E;  4QDD A;  4HM6 A;  1BCC E;  2QJY C;  2ZYL A;  3GB4 A;  2E74 D;  3H1I E;  3GL0 A;  5HL4 A;  4QUQ A;  4PV1 D;  3VMH D;  1O7N A;  3GKE A;  3GTS A;  1P84 E;  1O7P A;  4QDF A;  1UUW A;  2BMR A;  3BCC E;  2JZA A;  4HM2 A;  3GZX A;  1KYO E;  3L73 E;  1SJG A;  2QPZ A;  3VCA A;  2GBW A;  3CXH E;  4NBD D;  2NUM A;  2E75 D;  4H0L D;  1ULJ A;  2I7F A;  3N0Q A;  5CXM A;  4HM4 A;  3H1H E; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...