2HMNA

Crystal structure of the naphthalene 1,2-dioxygenase f352v mutant bound to anthracene.
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTVGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase alpha subunit
publication title Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase.
pubmed doi rcsb
source organism Pseudomonas sp.
molecule tags Oxidoreductase
total genus 161
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2006-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2hmnA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2hmnA01
1O7MA 2QJYC 1NTZE 3CWBE 4H44D 2A06E 4NBFD 2E4QA 1BCCE 2CKFA 4QURA 1VM9A 1KB9E 3GZYA 2E4PA 4NBHA 1EZVE 2DE7D 2QJPC 1G8JB 2NUMA 2XRXA 2HMLA 4OGQD 5KLVE 4HM2A 4QUQA 1L0LE 1O7WA 4QDFB 1NU1E 1RFSA 2GBXA 4HM8A 3CX5E 2DE6A 1ULJA 3VCPA 3VMGA 3GZXA 2E74D 1BE3E 3VMHA 4QUPA 1Z03A 3L72E 2NWFA 1SQPE 2BMOA 2HMMA 2FYNC 4QCKA 3H1LE 4NB8A 5KLIC 1L0NE 1KYOE 3H1KE 3VMID 2HMOA 4HJLA 1PP9E 2XSHA 4AAYB 2YIUC 3TGUE 4QDFA 4NBED 4NB9D 3GCFA 4NBCA 1Z02A 3FOUA 1O7GA 4HM3A 4NBDD 3H1JE 3GKEA 3EQQA 5KKZC 4HM7A 2E75D 4U3FE 1UUWA 3H1IE 3EN1A 3D89A 4QDCA 4HM6A 2YVJB 1ULIA 1NTME 3L71E 4NBFA 3L73E 3GL2A 1VF5D 4NBBD 2DE7A 1G8KB 1NTKE 2GBWA 1O7NA 2I7FA 1O7HA 4NBAD 3N0QA 2HMJA 2HMNA 2JZAA 1NYKA 5AEWA 2NVGA 4AIVA 4NBGD 3BCCE 1SQXE 2DE5D 4H13D 3DQYA 2D2CD 3L74E 4PD4E 4P1BH 3C0DA 2B24A 2NUKA 3L75E 5AEUA 2QJKC 2ZT9D 4HM0A 4HM5A 2QPZA 1SQVE 3GTSA 4QDDA 3VMIA 1PPJE 4NBHD 2YFJA 3L70E 2BMRA 1EG9A 2XR8A 4NBEA 1NDOA 2BCCE 4NB9A 5CXMA 2JO6A 1SJGA 5BOKA 2Q3WA 1P84E 1VCKA 3GCEA 1ZRTE 2YFLA 2DE6D 1Z01A 4NBDA 3VMGD 4PV1D 2B1XA 3AZCA 4P1CH 2NVEA 1FQTA 3VMHD 3GKQA 2BMQA 1SQBE 2ZYLA 2YFIA 2NVFA 1JM1A 3H1HE 4EMJB 2FYUE 2XSOA 4NB8D 4NBBA 3VCAA 2HMKA 1UUVA 3GL0A 1Q90C 1SQQE 4HM1A 1O7PA 4H0LD 3GB4A 1WW9A 4NBAA 4NBCD 3GTEA 4HM4A 2IBZE 4HKVA 4NBGA 3GOBA 3CXHE 2DE5A 1RIEA 2E76D 5HL4A 1WQLA
chains in the Genus database with same CATH superfamily
1O7MA 2QJYC 1NTZE 3CWBE 4H44D 2A06E 4NBFD 2E4QA 1BCCE 2CKFA 4QURA 1VM9A 1KB9E 3GZYA 2E4PA 4NBHA 1EZVE 2DE7D 2QJPC 1G8JB 2NUMA 2XRXA 2HMLA 4OGQD 5KLVE 4HM2A 4QUQA 1L0LE 1O7WA 4QDFB 1NU1E 1RFSA 2GBXA 4HM8A 3CX5E 2DE6A 1ULJA 3VCPA 3VMGA 3GZXA 2E74D 1BE3E 3VMHA 4QUPA 1Z03A 3L72E 2NWFA 1SQPE 2BMOA 2HMMA 2FYNC 4QCKA 3H1LE 4NB8A 5KLIC 1L0NE 1KYOE 3H1KE 3VMID 2HMOA 4HJLA 1PP9E 2XSHA 4AAYB 2YIUC 3TGUE 4QDFA 4NBED 4NB9D 3GCFA 4NBCA 1Z02A 3FOUA 1O7GA 4HM3A 4NBDD 3H1JE 3GKEA 3EQQA 5KKZC 4HM7A 2E75D 4U3FE 1UUWA 3H1IE 3EN1A 3D89A 4QDCA 4HM6A 2YVJB 1ULIA 1NTME 3L71E 4NBFA 3L73E 3GL2A 1VF5D 4NBBD 2DE7A 1G8KB 1NTKE 2GBWA 1O7NA 2I7FA 1O7HA 4NBAD 3N0QA 2HMJA 2HMNA 2JZAA 1NYKA 5AEWA 2NVGA 4AIVA 4NBGD 3BCCE 1SQXE 2DE5D 4H13D 3DQYA 2D2CD 3L74E 4PD4E 4P1BH 3C0DA 2B24A 2NUKA 3L75E 5AEUA 2QJKC 2ZT9D 4HM0A 4HM5A 2QPZA 1SQVE 3GTSA 4QDDA 3VMIA 1PPJE 4NBHD 2YFJA 3L70E 2BMRA 1EG9A 2XR8A 4NBEA 1NDOA 2BCCE 4NB9A 5CXMA 2JO6A 1SJGA 5BOKA 2Q3WA 1P84E 1VCKA 3GCEA 1ZRTE 2YFLA 2DE6D 1Z01A 4NBDA 3VMGD 4PV1D 2B1XA 3AZCA 4P1CH 2NVEA 1FQTA 3VMHD 3GKQA 2BMQA 1SQBE 2ZYLA 2YFIA 2NVFA 1JM1A 3H1HE 4EMJB 2FYUE 2XSOA 4NB8D 4NBBA 3VCAA 2HMKA 1UUVA 3GL0A 1Q90C 1SQQE 4HM1A 1O7PA 4H0LD 3GB4A 1WW9A 4NBAA 4NBCD 3GTEA 4HM4A 2IBZE 4HKVA 4NBGA 3GOBA 3CXHE 2DE5A 1RIEA 2E76D 5HL4A 1WQLA
chains in the Genus database with same CATH topology
1O7MA 2QJYC 1NTZE 3CWBE 4H44D 2A06E 4NBFD 2E4QA 1BCCE 2CKFA 4QURA 1VM9A 1KB9E 3GZYA 2E4PA 4NBHA 1EZVE 2DE7D 2QJPC 1G8JB 2NUMA 2XRXA 2HMLA 4OGQD 5KLVE 4HM2A 4QUQA 1L0LE 1O7WA 4QDFB 1NU1E 1RFSA 2GBXA 4HM8A 3CX5E 2DE6A 1ULJA 3VCPA 3VMGA 3GZXA 2E74D 1BE3E 3VMHA 4QUPA 1Z03A 3L72E 2NWFA 1SQPE 2BMOA 2HMMA 2FYNC 4QCKA 3H1LE 4NB8A 5KLIC 1L0NE 1KYOE 3H1KE 3VMID 2HMOA 4HJLA 1PP9E 2XSHA 4AAYB 2YIUC 3TGUE 4QDFA 4NBED 4NB9D 3GCFA 4NBCA 1Z02A 3FOUA 1O7GA 4HM3A 4NBDD 3H1JE 3GKEA 3EQQA 5KKZC 4HM7A 2E75D 4U3FE 1UUWA 3H1IE 3EN1A 3D89A 4QDCA 4HM6A 2YVJB 1ULIA 1NTME 3L71E 4NBFA 3L73E 3GL2A 1VF5D 4NBBD 2DE7A 1G8KB 1NTKE 2GBWA 1O7NA 2I7FA 1O7HA 4NBAD 3N0QA 2HMJA 2HMNA 2JZAA 1NYKA 5AEWA 2NVGA 4AIVA 4NBGD 3BCCE 1SQXE 2DE5D 4H13D 3DQYA 2D2CD 3L74E 4PD4E 4P1BH 3C0DA 2B24A 2NUKA 3L75E 5AEUA 2QJKC 2ZT9D 4HM0A 4HM5A 2QPZA 1SQVE 3GTSA 4QDDA 3VMIA 1PPJE 4NBHD 2YFJA 3L70E 2BMRA 1EG9A 2XR8A 4NBEA 1NDOA 2BCCE 4NB9A 5CXMA 2JO6A 1SJGA 5BOKA 2Q3WA 1P84E 1VCKA 3GCEA 1ZRTE 2YFLA 2DE6D 1Z01A 4NBDA 3VMGD 4PV1D 2B1XA 3AZCA 4P1CH 2NVEA 1FQTA 3VMHD 3GKQA 2BMQA 1SQBE 2ZYLA 2YFIA 2NVFA 1JM1A 3H1HE 4EMJB 2FYUE 2XSOA 4NB8D 4NBBA 3VCAA 2HMKA 1UUVA 3GL0A 1Q90C 1SQQE 4HM1A 1O7PA 4H0LD 3GB4A 1WW9A 4NBAA 4NBCD 3GTEA 4HM4A 2IBZE 4HKVA 4NBGA 3GOBA 3CXHE 2DE5A 1RIEA 2E76D 5HL4A 1WQLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O7M A;  2QJY C;  1NTZ E;  3CWB E;  4H44 D;  2A06 E;  4NBF D;  2E4Q A;  1BCC E;  2CKF A;  4QUR A;  1VM9 A;  1KB9 E;  3GZY A;  2E4P A;  4NBH A;  1EZV E;  2DE7 D;  2QJP C;  1G8J B;  2NUM A;  2XRX A;  2HML A;  4OGQ D;  5KLV E;  4HM2 A;  4QUQ A;  1L0L E;  1O7W A;  4QDF B;  1NU1 E;  1RFS A;  2GBX A;  4HM8 A;  3CX5 E;  2DE6 A;  1ULJ A;  3VCP A;  3VMG A;  3GZX A;  2E74 D;  1BE3 E;  3VMH A;  4QUP A;  1Z03 A;  3L72 E;  2NWF A;  1SQP E;  2BMO A;  2HMM A;  2FYN C;  4QCK A;  3H1L E;  4NB8 A;  5KLI C;  1L0N E;  1KYO E;  3H1K E;  3VMI D;  2HMO A;  4HJL A;  1PP9 E;  2XSH A;  4AAY B;  2YIU C;  3TGU E;  4QDF A;  4NBE D;  4NB9 D;  3GCF A;  4NBC A;  1Z02 A;  3FOU A;  1O7G A;  4HM3 A;  4NBD D;  3H1J E;  3GKE A;  3EQQ A;  5KKZ C;  4HM7 A;  2E75 D;  4U3F E;  1UUW A;  3H1I E;  3EN1 A;  3D89 A;  4QDC A;  4HM6 A;  2YVJ B;  1ULI A;  1NTM E;  3L71 E;  4NBF A;  3L73 E;  3GL2 A;  1VF5 D;  4NBB D;  2DE7 A;  1G8K B;  1NTK E;  2GBW A;  1O7N A;  2I7F A;  1O7H A;  4NBA D;  3N0Q A;  2HMJ A;  2HMN A;  2JZA A;  1NYK A;  5AEW A;  2NVG A;  4AIV A;  4NBG D;  3BCC E;  1SQX E;  2DE5 D;  4H13 D;  3DQY A;  2D2C D;  3L74 E;  4PD4 E;  4P1B H;  3C0D A;  2B24 A;  2NUK A;  3L75 E;  5AEU A;  2QJK C;  2ZT9 D;  4HM0 A;  4HM5 A;  2QPZ A;  1SQV E;  3GTS A;  4QDD A;  3VMI A;  1PPJ E;  4NBH D;  2YFJ A;  3L70 E;  2BMR A;  1EG9 A;  2XR8 A;  4NBE A;  1NDO A;  2BCC E;  4NB9 A;  5CXM A;  2JO6 A;  1SJG A;  5BOK A;  2Q3W A;  1P84 E;  1VCK A;  3GCE A;  1ZRT E;  2YFL A;  2DE6 D;  1Z01 A;  4NBD A;  3VMG D;  4PV1 D;  2B1X A;  3AZC A;  4P1C H;  2NVE A;  1FQT A;  3VMH D;  3GKQ A;  2BMQ A;  1SQB E;  2ZYL A;  2YFI A;  2NVF A;  1JM1 A;  3H1H E;  4EMJ B;  2FYU E;  2XSO A;  4NB8 D;  4NBB A;  3VCA A;  2HMK A;  1UUV A;  3GL0 A;  1Q90 C;  1SQQ E;  4HM1 A;  1O7P A;  4H0L D;  3GB4 A;  1WW9 A;  4NBA A;  4NBC D;  3GTE A;  4HM4 A;  2IBZ E;  4HKV A;  4NBG A;  3GOB A;  3CXH E;  2DE5 A;  1RIE A;  2E76 D;  5HL4 A;  1WQL A; 
#chains in the Genus database with same CATH topology
 1O7M A;  2QJY C;  1NTZ E;  3CWB E;  4H44 D;  2A06 E;  4NBF D;  2E4Q A;  1BCC E;  2CKF A;  4QUR A;  1VM9 A;  1KB9 E;  3GZY A;  2E4P A;  4NBH A;  1EZV E;  2DE7 D;  2QJP C;  1G8J B;  2NUM A;  2XRX A;  2HML A;  4OGQ D;  5KLV E;  4HM2 A;  4QUQ A;  1L0L E;  1O7W A;  4QDF B;  1NU1 E;  1RFS A;  2GBX A;  4HM8 A;  3CX5 E;  2DE6 A;  1ULJ A;  3VCP A;  3VMG A;  3GZX A;  2E74 D;  1BE3 E;  3VMH A;  4QUP A;  1Z03 A;  3L72 E;  2NWF A;  1SQP E;  2BMO A;  2HMM A;  2FYN C;  4QCK A;  3H1L E;  4NB8 A;  5KLI C;  1L0N E;  1KYO E;  3H1K E;  3VMI D;  2HMO A;  4HJL A;  1PP9 E;  2XSH A;  4AAY B;  2YIU C;  3TGU E;  4QDF A;  4NBE D;  4NB9 D;  3GCF A;  4NBC A;  1Z02 A;  3FOU A;  1O7G A;  4HM3 A;  4NBD D;  3H1J E;  3GKE A;  3EQQ A;  5KKZ C;  4HM7 A;  2E75 D;  4U3F E;  1UUW A;  3H1I E;  3EN1 A;  3D89 A;  4QDC A;  4HM6 A;  2YVJ B;  1ULI A;  1NTM E;  3L71 E;  4NBF A;  3L73 E;  3GL2 A;  1VF5 D;  4NBB D;  2DE7 A;  1G8K B;  1NTK E;  2GBW A;  1O7N A;  2I7F A;  1O7H A;  4NBA D;  3N0Q A;  2HMJ A;  2HMN A;  2JZA A;  1NYK A;  5AEW A;  2NVG A;  4AIV A;  4NBG D;  3BCC E;  1SQX E;  2DE5 D;  4H13 D;  3DQY A;  2D2C D;  3L74 E;  4PD4 E;  4P1B H;  3C0D A;  2B24 A;  2NUK A;  3L75 E;  5AEU A;  2QJK C;  2ZT9 D;  4HM0 A;  4HM5 A;  2QPZ A;  1SQV E;  3GTS A;  4QDD A;  3VMI A;  1PPJ E;  4NBH D;  2YFJ A;  3L70 E;  2BMR A;  1EG9 A;  2XR8 A;  4NBE A;  1NDO A;  2BCC E;  4NB9 A;  5CXM A;  2JO6 A;  1SJG A;  5BOK A;  2Q3W A;  1P84 E;  1VCK A;  3GCE A;  1ZRT E;  2YFL A;  2DE6 D;  1Z01 A;  4NBD A;  3VMG D;  4PV1 D;  2B1X A;  3AZC A;  4P1C H;  2NVE A;  1FQT A;  3VMH D;  3GKQ A;  2BMQ A;  1SQB E;  2ZYL A;  2YFI A;  2NVF A;  1JM1 A;  3H1H E;  4EMJ B;  2FYU E;  2XSO A;  4NB8 D;  4NBB A;  3VCA A;  2HMK A;  1UUV A;  3GL0 A;  1Q90 C;  1SQQ E;  4HM1 A;  1O7P A;  4H0L D;  3GB4 A;  1WW9 A;  4NBA A;  4NBC D;  3GTE A;  4HM4 A;  2IBZ E;  4HKV A;  4NBG A;  3GOB A;  3CXH E;  2DE5 A;  1RIE A;  2E76 D;  5HL4 A;  1WQL A; 
#chains in the Genus database with same CATH homology
 1O7M A;  2QJY C;  1NTZ E;  3CWB E;  4H44 D;  2A06 E;  4NBF D;  2E4Q A;  1BCC E;  2CKF A;  4QUR A;  1VM9 A;  1KB9 E;  3GZY A;  2E4P A;  4NBH A;  1EZV E;  2DE7 D;  2QJP C;  1G8J B;  2NUM A;  2XRX A;  2HML A;  4OGQ D;  5KLV E;  4HM2 A;  4QUQ A;  1L0L E;  1O7W A;  4QDF B;  1NU1 E;  1RFS A;  2GBX A;  4HM8 A;  3CX5 E;  2DE6 A;  1ULJ A;  3VCP A;  3VMG A;  3GZX A;  2E74 D;  1BE3 E;  3VMH A;  4QUP A;  1Z03 A;  3L72 E;  2NWF A;  1SQP E;  2BMO A;  2HMM A;  2FYN C;  4QCK A;  3H1L E;  4NB8 A;  5KLI C;  1L0N E;  1KYO E;  3H1K E;  3VMI D;  2HMO A;  4HJL A;  1PP9 E;  2XSH A;  4AAY B;  2YIU C;  3TGU E;  4QDF A;  4NBE D;  4NB9 D;  3GCF A;  4NBC A;  1Z02 A;  3FOU A;  1O7G A;  4HM3 A;  4NBD D;  3H1J E;  3GKE A;  3EQQ A;  5KKZ C;  4HM7 A;  2E75 D;  4U3F E;  1UUW A;  3H1I E;  3EN1 A;  3D89 A;  4QDC A;  4HM6 A;  2YVJ B;  1ULI A;  1NTM E;  3L71 E;  4NBF A;  3L73 E;  3GL2 A;  1VF5 D;  4NBB D;  2DE7 A;  1G8K B;  1NTK E;  2GBW A;  1O7N A;  2I7F A;  1O7H A;  4NBA D;  3N0Q A;  2HMJ A;  2HMN A;  2JZA A;  1NYK A;  5AEW A;  2NVG A;  4AIV A;  4NBG D;  3BCC E;  1SQX E;  2DE5 D;  4H13 D;  3DQY A;  2D2C D;  3L74 E;  4PD4 E;  4P1B H;  3C0D A;  2B24 A;  2NUK A;  3L75 E;  5AEU A;  2QJK C;  2ZT9 D;  4HM0 A;  4HM5 A;  2QPZ A;  1SQV E;  3GTS A;  4QDD A;  3VMI A;  1PPJ E;  4NBH D;  2YFJ A;  3L70 E;  2BMR A;  1EG9 A;  2XR8 A;  4NBE A;  1NDO A;  2BCC E;  4NB9 A;  5CXM A;  2JO6 A;  1SJG A;  5BOK A;  2Q3W A;  1P84 E;  1VCK A;  3GCE A;  1ZRT E;  2YFL A;  2DE6 D;  1Z01 A;  4NBD A;  3VMG D;  4PV1 D;  2B1X A;  3AZC A;  4P1C H;  2NVE A;  1FQT A;  3VMH D;  3GKQ A;  2BMQ A;  1SQB E;  2ZYL A;  2YFI A;  2NVF A;  1JM1 A;  3H1H E;  4EMJ B;  2FYU E;  2XSO A;  4NB8 D;  4NBB A;  3VCA A;  2HMK A;  1UUV A;  3GL0 A;  1Q90 C;  1SQQ E;  4HM1 A;  1O7P A;  4H0L D;  3GB4 A;  1WW9 A;  4NBA A;  4NBC D;  3GTE A;  4HM4 A;  2IBZ E;  4HKV A;  4NBG A;  3GOB A;  3CXH E;  2DE5 A;  1RIE A;  2E76 D;  5HL4 A;  1WQL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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