4HM1A

Naphthalene 1,2-dioxygenase bound to 1-indanone
Total Genus 162
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
publication title Naphthalene 1,2-Dioxygenase bound to 1-indanone
rcsb
source organism Pseudomonas sp. c18
molecule tags Oxidoreductase/oxidoreductase inhibitor
total genus 162
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm1A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm1A01
2JO6A 4PD4E 3GZYA 1NTME 3GKEA 2XRXA 3VMHA 4QDFA 1EZVE 2NVFA 3L70E 1O7HA 1SQBE 3L73E 3AZCA 2YIUC 3EN1A 4NBDA 3VMGA 4NBFA 2GBXA 4QDDA 1Z03A 4QURA 4QDCA 1Z01A 2XSOA 1P84E 4HM4A 2QJYC 3L72E 1O7NA 4OGQD 4NBHA 2HMOA 3BCCE 1NU1E 4NBGD 2YFJA 4H0LD 2HMLA 4P1CH 2QJPC 1NYKA 3FOUA 2DE5D 2E4PA 2FYNC 1Q90C 2HMKA 1G8KB 4U3FE 1SQPE 1FQTA 2GBWA 2DE7D 3C0DA 1PP9E 4HM5A 2FYUE 5KKZC 5CXMA 4AIVA 3VMIA 1L0LE 4NB9A 4EMJB 3L75E 4HM2A 1BE3E 1SQXE 2YVJB 2IBZE 3EQQA 3H1IE 1KYOE 2BCCE 3VMGD 5AEUA 1G8JB 3L74E 4HM7A 2DE6A 2YFIA 2QPZA 2NWFA 4PV1D 3D89A 4NBBD 3DQYA 3H1LE 4NBEA 5HL4A 3GOBA 1UUVA 3CXHE 2HMJA 1O7WA 4QUQA 2E76D 4HM6A 2A06E 4HM1A 3VCAA 5AEWA 4NB8D 1VF5D 2NVEA 1SJGA 2XR8A 2XSHA 3TGUE 3GKQA 1RIEA 2BMQA 4QCKA 2I7FA 3VMHD 1SQQE 4H44D 4NB9D 3VMID 1ZRTE 3VCPA 1NTZE 5BOKA 4NBGA 4NBDD 1VM9A 4NBFD 4HM8A 2NVGA 4NBAA 2QJKC 3CX5E 2E4QA 4NBHD 3H1JE 1ULIA 2YFLA 3L71E 1UUWA 1NDOA 2ZT9D 3GZXA 4NBCA 2BMRA 1KB9E 2HMNA 4HJLA 2B24A 2DE7A 1JM1A 1WQLA 2ZYLA 2E75D 1PPJE 2HMMA 2CKFA 3GTEA 1O7MA 5KLIC 3GL0A 3GTSA 3GL2A 2JZAA 4H13D 4AAYB 1O7GA 2B1XA 1RFSA 4HKVA 1ULJA 3H1KE 4QDFB 2NUMA 3GCEA 1L0NE 1EG9A 3H1HE 4NBBA 3GCFA 1NTKE 1SQVE 2BMOA 4NBAD 2D2CD 2DE6D 3GB4A 4HM3A 2DE5A 2Q3WA 5KLVE 4QUPA 1WW9A 1Z02A 1O7PA 2NUKA 4NBCD 4HM0A 3CWBE 2E74D 3N0QA 4NBED 4NB8A 1BCCE 1VCKA 4P1BH
chains in the Genus database with same CATH superfamily
2JO6A 4PD4E 3GZYA 1NTME 3GKEA 2XRXA 3VMHA 4QDFA 1EZVE 2NVFA 3L70E 1O7HA 1SQBE 3L73E 3AZCA 2YIUC 3EN1A 4NBDA 3VMGA 4NBFA 2GBXA 4QDDA 1Z03A 4QURA 4QDCA 1Z01A 2XSOA 1P84E 4HM4A 2QJYC 3L72E 1O7NA 4OGQD 4NBHA 2HMOA 3BCCE 1NU1E 4NBGD 2YFJA 4H0LD 2HMLA 4P1CH 2QJPC 1NYKA 3FOUA 2DE5D 2E4PA 2FYNC 1Q90C 2HMKA 1G8KB 4U3FE 1SQPE 1FQTA 2GBWA 2DE7D 3C0DA 1PP9E 4HM5A 2FYUE 5KKZC 5CXMA 4AIVA 3VMIA 1L0LE 4NB9A 4EMJB 3L75E 4HM2A 1BE3E 1SQXE 2YVJB 2IBZE 3EQQA 3H1IE 1KYOE 2BCCE 3VMGD 5AEUA 1G8JB 3L74E 4HM7A 2DE6A 2YFIA 2QPZA 2NWFA 4PV1D 3D89A 4NBBD 3DQYA 3H1LE 4NBEA 5HL4A 3GOBA 1UUVA 3CXHE 2HMJA 1O7WA 4QUQA 2E76D 4HM6A 2A06E 4HM1A 3VCAA 5AEWA 4NB8D 1VF5D 2NVEA 1SJGA 2XR8A 2XSHA 3TGUE 3GKQA 1RIEA 2BMQA 4QCKA 2I7FA 3VMHD 1SQQE 4H44D 4NB9D 3VMID 1ZRTE 3VCPA 1NTZE 5BOKA 4NBGA 4NBDD 1VM9A 4NBFD 4HM8A 2NVGA 4NBAA 2QJKC 3CX5E 2E4QA 4NBHD 3H1JE 1ULIA 2YFLA 3L71E 1UUWA 1NDOA 2ZT9D 3GZXA 4NBCA 2BMRA 1KB9E 2HMNA 4HJLA 2B24A 2DE7A 1JM1A 1WQLA 2ZYLA 2E75D 1PPJE 2HMMA 2CKFA 3GTEA 1O7MA 5KLIC 3GL0A 3GTSA 3GL2A 2JZAA 4H13D 4AAYB 1O7GA 2B1XA 1RFSA 4HKVA 1ULJA 3H1KE 4QDFB 2NUMA 3GCEA 1L0NE 1EG9A 3H1HE 4NBBA 3GCFA 1NTKE 1SQVE 2BMOA 4NBAD 2D2CD 2DE6D 3GB4A 4HM3A 2DE5A 2Q3WA 5KLVE 4QUPA 1WW9A 1Z02A 1O7PA 2NUKA 4NBCD 4HM0A 3CWBE 2E74D 3N0QA 4NBED 4NB8A 1BCCE 1VCKA 4P1BH
chains in the Genus database with same CATH topology
2JO6A 4PD4E 3GZYA 1NTME 3GKEA 2XRXA 3VMHA 4QDFA 1EZVE 2NVFA 3L70E 1O7HA 1SQBE 3L73E 3AZCA 2YIUC 3EN1A 4NBDA 3VMGA 4NBFA 2GBXA 4QDDA 1Z03A 4QURA 4QDCA 1Z01A 2XSOA 1P84E 4HM4A 2QJYC 3L72E 1O7NA 4OGQD 4NBHA 2HMOA 3BCCE 1NU1E 4NBGD 2YFJA 4H0LD 2HMLA 4P1CH 2QJPC 1NYKA 3FOUA 2DE5D 2E4PA 2FYNC 1Q90C 2HMKA 1G8KB 4U3FE 1SQPE 1FQTA 2GBWA 2DE7D 3C0DA 1PP9E 4HM5A 2FYUE 5KKZC 5CXMA 4AIVA 3VMIA 1L0LE 4NB9A 4EMJB 3L75E 4HM2A 1BE3E 1SQXE 2YVJB 2IBZE 3EQQA 3H1IE 1KYOE 2BCCE 3VMGD 5AEUA 1G8JB 3L74E 4HM7A 2DE6A 2YFIA 2QPZA 2NWFA 4PV1D 3D89A 4NBBD 3DQYA 3H1LE 4NBEA 5HL4A 3GOBA 1UUVA 3CXHE 2HMJA 1O7WA 4QUQA 2E76D 4HM6A 2A06E 4HM1A 3VCAA 5AEWA 4NB8D 1VF5D 2NVEA 1SJGA 2XR8A 2XSHA 3TGUE 3GKQA 1RIEA 2BMQA 4QCKA 2I7FA 3VMHD 1SQQE 4H44D 4NB9D 3VMID 1ZRTE 3VCPA 1NTZE 5BOKA 4NBGA 4NBDD 1VM9A 4NBFD 4HM8A 2NVGA 4NBAA 2QJKC 3CX5E 2E4QA 4NBHD 3H1JE 1ULIA 2YFLA 3L71E 1UUWA 1NDOA 2ZT9D 3GZXA 4NBCA 2BMRA 1KB9E 2HMNA 4HJLA 2B24A 2DE7A 1JM1A 1WQLA 2ZYLA 2E75D 1PPJE 2HMMA 2CKFA 3GTEA 1O7MA 5KLIC 3GL0A 3GTSA 3GL2A 2JZAA 4H13D 4AAYB 1O7GA 2B1XA 1RFSA 4HKVA 1ULJA 3H1KE 4QDFB 2NUMA 3GCEA 1L0NE 1EG9A 3H1HE 4NBBA 3GCFA 1NTKE 1SQVE 2BMOA 4NBAD 2D2CD 2DE6D 3GB4A 4HM3A 2DE5A 2Q3WA 5KLVE 4QUPA 1WW9A 1Z02A 1O7PA 2NUKA 4NBCD 4HM0A 3CWBE 2E74D 3N0QA 4NBED 4NB8A 1BCCE 1VCKA 4P1BH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JO6 A;  4PD4 E;  3GZY A;  1NTM E;  3GKE A;  2XRX A;  3VMH A;  4QDF A;  1EZV E;  2NVF A;  3L70 E;  1O7H A;  1SQB E;  3L73 E;  3AZC A;  2YIU C;  3EN1 A;  4NBD A;  3VMG A;  4NBF A;  2GBX A;  4QDD A;  1Z03 A;  4QUR A;  4QDC A;  1Z01 A;  2XSO A;  1P84 E;  4HM4 A;  2QJY C;  3L72 E;  1O7N A;  4OGQ D;  4NBH A;  2HMO A;  3BCC E;  1NU1 E;  4NBG D;  2YFJ A;  4H0L D;  2HML A;  4P1C H;  2QJP C;  1NYK A;  3FOU A;  2DE5 D;  2E4P A;  2FYN C;  1Q90 C;  2HMK A;  1G8K B;  4U3F E;  1SQP E;  1FQT A;  2GBW A;  2DE7 D;  3C0D A;  1PP9 E;  4HM5 A;  2FYU E;  5KKZ C;  5CXM A;  4AIV A;  3VMI A;  1L0L E;  4NB9 A;  4EMJ B;  3L75 E;  4HM2 A;  1BE3 E;  1SQX E;  2YVJ B;  2IBZ E;  3EQQ A;  3H1I E;  1KYO E;  2BCC E;  3VMG D;  5AEU A;  1G8J B;  3L74 E;  4HM7 A;  2DE6 A;  2YFI A;  2QPZ A;  2NWF A;  4PV1 D;  3D89 A;  4NBB D;  3DQY A;  3H1L E;  4NBE A;  5HL4 A;  3GOB A;  1UUV A;  3CXH E;  2HMJ A;  1O7W A;  4QUQ A;  2E76 D;  4HM6 A;  2A06 E;  4HM1 A;  3VCA A;  5AEW A;  4NB8 D;  1VF5 D;  2NVE A;  1SJG A;  2XR8 A;  2XSH A;  3TGU E;  3GKQ A;  1RIE A;  2BMQ A;  4QCK A;  2I7F A;  3VMH D;  1SQQ E;  4H44 D;  4NB9 D;  3VMI D;  1ZRT E;  3VCP A;  1NTZ E;  5BOK A;  4NBG A;  4NBD D;  1VM9 A;  4NBF D;  4HM8 A;  2NVG A;  4NBA A;  2QJK C;  3CX5 E;  2E4Q A;  4NBH D;  3H1J E;  1ULI A;  2YFL A;  3L71 E;  1UUW A;  1NDO A;  2ZT9 D;  3GZX A;  4NBC A;  2BMR A;  1KB9 E;  2HMN A;  4HJL A;  2B24 A;  2DE7 A;  1JM1 A;  1WQL A;  2ZYL A;  2E75 D;  1PPJ E;  2HMM A;  2CKF A;  3GTE A;  1O7M A;  5KLI C;  3GL0 A;  3GTS A;  3GL2 A;  2JZA A;  4H13 D;  4AAY B;  1O7G A;  2B1X A;  1RFS A;  4HKV A;  1ULJ A;  3H1K E;  4QDF B;  2NUM A;  3GCE A;  1L0N E;  1EG9 A;  3H1H E;  4NBB A;  3GCF A;  1NTK E;  1SQV E;  2BMO A;  4NBA D;  2D2C D;  2DE6 D;  3GB4 A;  4HM3 A;  2DE5 A;  2Q3W A;  5KLV E;  4QUP A;  1WW9 A;  1Z02 A;  1O7P A;  2NUK A;  4NBC D;  4HM0 A;  3CWB E;  2E74 D;  3N0Q A;  4NBE D;  4NB8 A;  1BCC E;  1VCK A;  4P1B H; 
#chains in the Genus database with same CATH topology
 2JO6 A;  4PD4 E;  3GZY A;  1NTM E;  3GKE A;  2XRX A;  3VMH A;  4QDF A;  1EZV E;  2NVF A;  3L70 E;  1O7H A;  1SQB E;  3L73 E;  3AZC A;  2YIU C;  3EN1 A;  4NBD A;  3VMG A;  4NBF A;  2GBX A;  4QDD A;  1Z03 A;  4QUR A;  4QDC A;  1Z01 A;  2XSO A;  1P84 E;  4HM4 A;  2QJY C;  3L72 E;  1O7N A;  4OGQ D;  4NBH A;  2HMO A;  3BCC E;  1NU1 E;  4NBG D;  2YFJ A;  4H0L D;  2HML A;  4P1C H;  2QJP C;  1NYK A;  3FOU A;  2DE5 D;  2E4P A;  2FYN C;  1Q90 C;  2HMK A;  1G8K B;  4U3F E;  1SQP E;  1FQT A;  2GBW A;  2DE7 D;  3C0D A;  1PP9 E;  4HM5 A;  2FYU E;  5KKZ C;  5CXM A;  4AIV A;  3VMI A;  1L0L E;  4NB9 A;  4EMJ B;  3L75 E;  4HM2 A;  1BE3 E;  1SQX E;  2YVJ B;  2IBZ E;  3EQQ A;  3H1I E;  1KYO E;  2BCC E;  3VMG D;  5AEU A;  1G8J B;  3L74 E;  4HM7 A;  2DE6 A;  2YFI A;  2QPZ A;  2NWF A;  4PV1 D;  3D89 A;  4NBB D;  3DQY A;  3H1L E;  4NBE A;  5HL4 A;  3GOB A;  1UUV A;  3CXH E;  2HMJ A;  1O7W A;  4QUQ A;  2E76 D;  4HM6 A;  2A06 E;  4HM1 A;  3VCA A;  5AEW A;  4NB8 D;  1VF5 D;  2NVE A;  1SJG A;  2XR8 A;  2XSH A;  3TGU E;  3GKQ A;  1RIE A;  2BMQ A;  4QCK A;  2I7F A;  3VMH D;  1SQQ E;  4H44 D;  4NB9 D;  3VMI D;  1ZRT E;  3VCP A;  1NTZ E;  5BOK A;  4NBG A;  4NBD D;  1VM9 A;  4NBF D;  4HM8 A;  2NVG A;  4NBA A;  2QJK C;  3CX5 E;  2E4Q A;  4NBH D;  3H1J E;  1ULI A;  2YFL A;  3L71 E;  1UUW A;  1NDO A;  2ZT9 D;  3GZX A;  4NBC A;  2BMR A;  1KB9 E;  2HMN A;  4HJL A;  2B24 A;  2DE7 A;  1JM1 A;  1WQL A;  2ZYL A;  2E75 D;  1PPJ E;  2HMM A;  2CKF A;  3GTE A;  1O7M A;  5KLI C;  3GL0 A;  3GTS A;  3GL2 A;  2JZA A;  4H13 D;  4AAY B;  1O7G A;  2B1X A;  1RFS A;  4HKV A;  1ULJ A;  3H1K E;  4QDF B;  2NUM A;  3GCE A;  1L0N E;  1EG9 A;  3H1H E;  4NBB A;  3GCF A;  1NTK E;  1SQV E;  2BMO A;  4NBA D;  2D2C D;  2DE6 D;  3GB4 A;  4HM3 A;  2DE5 A;  2Q3W A;  5KLV E;  4QUP A;  1WW9 A;  1Z02 A;  1O7P A;  2NUK A;  4NBC D;  4HM0 A;  3CWB E;  2E74 D;  3N0Q A;  4NBE D;  4NB8 A;  1BCC E;  1VCK A;  4P1B H; 
#chains in the Genus database with same CATH homology
 2JO6 A;  4PD4 E;  3GZY A;  1NTM E;  3GKE A;  2XRX A;  3VMH A;  4QDF A;  1EZV E;  2NVF A;  3L70 E;  1O7H A;  1SQB E;  3L73 E;  3AZC A;  2YIU C;  3EN1 A;  4NBD A;  3VMG A;  4NBF A;  2GBX A;  4QDD A;  1Z03 A;  4QUR A;  4QDC A;  1Z01 A;  2XSO A;  1P84 E;  4HM4 A;  2QJY C;  3L72 E;  1O7N A;  4OGQ D;  4NBH A;  2HMO A;  3BCC E;  1NU1 E;  4NBG D;  2YFJ A;  4H0L D;  2HML A;  4P1C H;  2QJP C;  1NYK A;  3FOU A;  2DE5 D;  2E4P A;  2FYN C;  1Q90 C;  2HMK A;  1G8K B;  4U3F E;  1SQP E;  1FQT A;  2GBW A;  2DE7 D;  3C0D A;  1PP9 E;  4HM5 A;  2FYU E;  5KKZ C;  5CXM A;  4AIV A;  3VMI A;  1L0L E;  4NB9 A;  4EMJ B;  3L75 E;  4HM2 A;  1BE3 E;  1SQX E;  2YVJ B;  2IBZ E;  3EQQ A;  3H1I E;  1KYO E;  2BCC E;  3VMG D;  5AEU A;  1G8J B;  3L74 E;  4HM7 A;  2DE6 A;  2YFI A;  2QPZ A;  2NWF A;  4PV1 D;  3D89 A;  4NBB D;  3DQY A;  3H1L E;  4NBE A;  5HL4 A;  3GOB A;  1UUV A;  3CXH E;  2HMJ A;  1O7W A;  4QUQ A;  2E76 D;  4HM6 A;  2A06 E;  4HM1 A;  3VCA A;  5AEW A;  4NB8 D;  1VF5 D;  2NVE A;  1SJG A;  2XR8 A;  2XSH A;  3TGU E;  3GKQ A;  1RIE A;  2BMQ A;  4QCK A;  2I7F A;  3VMH D;  1SQQ E;  4H44 D;  4NB9 D;  3VMI D;  1ZRT E;  3VCP A;  1NTZ E;  5BOK A;  4NBG A;  4NBD D;  1VM9 A;  4NBF D;  4HM8 A;  2NVG A;  4NBA A;  2QJK C;  3CX5 E;  2E4Q A;  4NBH D;  3H1J E;  1ULI A;  2YFL A;  3L71 E;  1UUW A;  1NDO A;  2ZT9 D;  3GZX A;  4NBC A;  2BMR A;  1KB9 E;  2HMN A;  4HJL A;  2B24 A;  2DE7 A;  1JM1 A;  1WQL A;  2ZYL A;  2E75 D;  1PPJ E;  2HMM A;  2CKF A;  3GTE A;  1O7M A;  5KLI C;  3GL0 A;  3GTS A;  3GL2 A;  2JZA A;  4H13 D;  4AAY B;  1O7G A;  2B1X A;  1RFS A;  4HKV A;  1ULJ A;  3H1K E;  4QDF B;  2NUM A;  3GCE A;  1L0N E;  1EG9 A;  3H1H E;  4NBB A;  3GCF A;  1NTK E;  1SQV E;  2BMO A;  4NBA D;  2D2C D;  2DE6 D;  3GB4 A;  4HM3 A;  2DE5 A;  2Q3W A;  5KLV E;  4QUP A;  1WW9 A;  1Z02 A;  1O7P A;  2NUK A;  4NBC D;  4HM0 A;  3CWB E;  2E74 D;  3N0Q A;  4NBE D;  4NB8 A;  1BCC E;  1VCK A;  4P1B H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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