1O7NA

Naphthalene 1,2-dioxygenase, ternary complex with dioxygen and indole
Total Genus 162
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal Structure of Naphthalene Dioxygenase: Side-on Binding of Dioxygen to Iron
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Oxidoreductase
molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
total genus 162
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2002-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1o7nA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1o7nA01
5KKZC 1P84E 2A06E 2E4QA 1UUWA 1NU1E 4NBAA 1L0NE 2NUKA 1ULJA 3TGUE 2XR8A 3VMIA 2XSHA 3GZYA 1G8KB 1Q90C 3FOUA 4AIVA 3BCCE 2ZT9D 3EN1A 4HM1A 4NBHA 2HMKA 4U3FE 4HM3A 1FQTA 4H44D 4PD4E 1L0LE 1SQPE 3VMID 1NTZE 3H1LE 1KYOE 1PPJE 4NBCA 2B24A 2YVJB 3GTEA 2Q3WA 1SQXE 1O7PA 4P1CH 3CX5E 3L73E 2BMOA 2JZAA 2XSOA 2ZYLA 1ZRTE 3H1JE 4QURA 2DE5A 2E74D 1SJGA 4AAYB 4HM6A 1BE3E 2NUMA 3VMGD 4NBCD 4EMJB 2NVGA 1UUVA 4HM8A 4NBFA 1SQQE 3CWBE 4OGQD 1RFSA 1NYKA 1O7GA 2JO6A 3GL2A 4HM7A 2QJKC 3D89A 3N0QA 4NBBA 5KLIC 1Z03A 2HMLA 1JM1A 2CKFA 3GCEA 1RIEA 4QDCA 5AEWA 1NTME 1ULIA 1WW9A 4NB8A 2GBWA 1BCCE 5KLVE 2DE7A 1VF5D 4NBHD 3GCFA 1O7WA 3VMHD 1SQVE 2DE5D 1PP9E 2QJPC 2NVFA 4HM4A 5CXMA 2NVEA 5BOKA 2D2CD 2QJYC 4HM2A 1O7HA 3VMHA 4NBEA 4NBDA 2E75D 1EZVE 1VM9A 2DE7D 4QUPA 2BMRA 1VCKA 4NB8D 3H1HE 1NTKE 4NBGD 1O7NA 2QPZA 3GKEA 2YIUC 2E76D 3GTSA 4HJLA 2DE6D 1O7MA 4NBED 4NBDD 1KB9E 3DQYA 2BMQA 5HL4A 2B1XA 3H1IE 2FYUE 2HMMA 2I7FA 1NDOA 3H1KE 3AZCA 2YFLA 4HM5A 5AEUA 2NWFA 4NBGA 3L70E 4QDDA 2HMNA 3VCAA 4NB9D 3CXHE 4QDFA 4NB9A 2IBZE 4QUQA 2E4PA 1Z02A 2FYNC 3EQQA 3L75E 2HMOA 1SQBE 3L72E 4QDFB 2YFJA 3GKQA 4HM0A 3C0DA 2BCCE 3VCPA 3GB4A 4H0LD 2XRXA 1Z01A 2GBXA 3GZXA 4H13D 3GL0A 4QCKA 2YFIA 4NBAD 4PV1D 2DE6A 4P1BH 3L71E 1G8JB 3L74E 3VMGA 3GOBA 4NBBD 4HKVA 2HMJA 4NBFD 1EG9A 1WQLA
chains in the Genus database with same CATH superfamily
5KKZC 1P84E 2A06E 2E4QA 1UUWA 1NU1E 4NBAA 1L0NE 2NUKA 1ULJA 3TGUE 2XR8A 3VMIA 2XSHA 3GZYA 1G8KB 1Q90C 3FOUA 4AIVA 3BCCE 2ZT9D 3EN1A 4HM1A 4NBHA 2HMKA 4U3FE 4HM3A 1FQTA 4H44D 4PD4E 1L0LE 1SQPE 3VMID 1NTZE 3H1LE 1KYOE 1PPJE 4NBCA 2B24A 2YVJB 3GTEA 2Q3WA 1SQXE 1O7PA 4P1CH 3CX5E 3L73E 2BMOA 2JZAA 2XSOA 2ZYLA 1ZRTE 3H1JE 4QURA 2DE5A 2E74D 1SJGA 4AAYB 4HM6A 1BE3E 2NUMA 3VMGD 4NBCD 4EMJB 2NVGA 1UUVA 4HM8A 4NBFA 1SQQE 3CWBE 4OGQD 1RFSA 1NYKA 1O7GA 2JO6A 3GL2A 4HM7A 2QJKC 3D89A 3N0QA 4NBBA 5KLIC 1Z03A 2HMLA 1JM1A 2CKFA 3GCEA 1RIEA 4QDCA 5AEWA 1NTME 1ULIA 1WW9A 4NB8A 2GBWA 1BCCE 5KLVE 2DE7A 1VF5D 4NBHD 3GCFA 1O7WA 3VMHD 1SQVE 2DE5D 1PP9E 2QJPC 2NVFA 4HM4A 5CXMA 2NVEA 5BOKA 2D2CD 2QJYC 4HM2A 1O7HA 3VMHA 4NBEA 4NBDA 2E75D 1EZVE 1VM9A 2DE7D 4QUPA 2BMRA 1VCKA 4NB8D 3H1HE 1NTKE 4NBGD 1O7NA 2QPZA 3GKEA 2YIUC 2E76D 3GTSA 4HJLA 2DE6D 1O7MA 4NBED 4NBDD 1KB9E 3DQYA 2BMQA 5HL4A 2B1XA 3H1IE 2FYUE 2HMMA 2I7FA 1NDOA 3H1KE 3AZCA 2YFLA 4HM5A 5AEUA 2NWFA 4NBGA 3L70E 4QDDA 2HMNA 3VCAA 4NB9D 3CXHE 4QDFA 4NB9A 2IBZE 4QUQA 2E4PA 1Z02A 2FYNC 3EQQA 3L75E 2HMOA 1SQBE 3L72E 4QDFB 2YFJA 3GKQA 4HM0A 3C0DA 2BCCE 3VCPA 3GB4A 4H0LD 2XRXA 1Z01A 2GBXA 3GZXA 4H13D 3GL0A 4QCKA 2YFIA 4NBAD 4PV1D 2DE6A 4P1BH 3L71E 1G8JB 3L74E 3VMGA 3GOBA 4NBBD 4HKVA 2HMJA 4NBFD 1EG9A 1WQLA
chains in the Genus database with same CATH topology
5KKZC 1P84E 2A06E 2E4QA 1UUWA 1NU1E 4NBAA 1L0NE 2NUKA 1ULJA 3TGUE 2XR8A 3VMIA 2XSHA 3GZYA 1G8KB 1Q90C 3FOUA 4AIVA 3BCCE 2ZT9D 3EN1A 4HM1A 4NBHA 2HMKA 4U3FE 4HM3A 1FQTA 4H44D 4PD4E 1L0LE 1SQPE 3VMID 1NTZE 3H1LE 1KYOE 1PPJE 4NBCA 2B24A 2YVJB 3GTEA 2Q3WA 1SQXE 1O7PA 4P1CH 3CX5E 3L73E 2BMOA 2JZAA 2XSOA 2ZYLA 1ZRTE 3H1JE 4QURA 2DE5A 2E74D 1SJGA 4AAYB 4HM6A 1BE3E 2NUMA 3VMGD 4NBCD 4EMJB 2NVGA 1UUVA 4HM8A 4NBFA 1SQQE 3CWBE 4OGQD 1RFSA 1NYKA 1O7GA 2JO6A 3GL2A 4HM7A 2QJKC 3D89A 3N0QA 4NBBA 5KLIC 1Z03A 2HMLA 1JM1A 2CKFA 3GCEA 1RIEA 4QDCA 5AEWA 1NTME 1ULIA 1WW9A 4NB8A 2GBWA 1BCCE 5KLVE 2DE7A 1VF5D 4NBHD 3GCFA 1O7WA 3VMHD 1SQVE 2DE5D 1PP9E 2QJPC 2NVFA 4HM4A 5CXMA 2NVEA 5BOKA 2D2CD 2QJYC 4HM2A 1O7HA 3VMHA 4NBEA 4NBDA 2E75D 1EZVE 1VM9A 2DE7D 4QUPA 2BMRA 1VCKA 4NB8D 3H1HE 1NTKE 4NBGD 1O7NA 2QPZA 3GKEA 2YIUC 2E76D 3GTSA 4HJLA 2DE6D 1O7MA 4NBED 4NBDD 1KB9E 3DQYA 2BMQA 5HL4A 2B1XA 3H1IE 2FYUE 2HMMA 2I7FA 1NDOA 3H1KE 3AZCA 2YFLA 4HM5A 5AEUA 2NWFA 4NBGA 3L70E 4QDDA 2HMNA 3VCAA 4NB9D 3CXHE 4QDFA 4NB9A 2IBZE 4QUQA 2E4PA 1Z02A 2FYNC 3EQQA 3L75E 2HMOA 1SQBE 3L72E 4QDFB 2YFJA 3GKQA 4HM0A 3C0DA 2BCCE 3VCPA 3GB4A 4H0LD 2XRXA 1Z01A 2GBXA 3GZXA 4H13D 3GL0A 4QCKA 2YFIA 4NBAD 4PV1D 2DE6A 4P1BH 3L71E 1G8JB 3L74E 3VMGA 3GOBA 4NBBD 4HKVA 2HMJA 4NBFD 1EG9A 1WQLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5KKZ C;  1P84 E;  2A06 E;  2E4Q A;  1UUW A;  1NU1 E;  4NBA A;  1L0N E;  2NUK A;  1ULJ A;  3TGU E;  2XR8 A;  3VMI A;  2XSH A;  3GZY A;  1G8K B;  1Q90 C;  3FOU A;  4AIV A;  3BCC E;  2ZT9 D;  3EN1 A;  4HM1 A;  4NBH A;  2HMK A;  4U3F E;  4HM3 A;  1FQT A;  4H44 D;  4PD4 E;  1L0L E;  1SQP E;  3VMI D;  1NTZ E;  3H1L E;  1KYO E;  1PPJ E;  4NBC A;  2B24 A;  2YVJ B;  3GTE A;  2Q3W A;  1SQX E;  1O7P A;  4P1C H;  3CX5 E;  3L73 E;  2BMO A;  2JZA A;  2XSO A;  2ZYL A;  1ZRT E;  3H1J E;  4QUR A;  2DE5 A;  2E74 D;  1SJG A;  4AAY B;  4HM6 A;  1BE3 E;  2NUM A;  3VMG D;  4NBC D;  4EMJ B;  2NVG A;  1UUV A;  4HM8 A;  4NBF A;  1SQQ E;  3CWB E;  4OGQ D;  1RFS A;  1NYK A;  1O7G A;  2JO6 A;  3GL2 A;  4HM7 A;  2QJK C;  3D89 A;  3N0Q A;  4NBB A;  5KLI C;  1Z03 A;  2HML A;  1JM1 A;  2CKF A;  3GCE A;  1RIE A;  4QDC A;  5AEW A;  1NTM E;  1ULI A;  1WW9 A;  4NB8 A;  2GBW A;  1BCC E;  5KLV E;  2DE7 A;  1VF5 D;  4NBH D;  3GCF A;  1O7W A;  3VMH D;  1SQV E;  2DE5 D;  1PP9 E;  2QJP C;  2NVF A;  4HM4 A;  5CXM A;  2NVE A;  5BOK A;  2D2C D;  2QJY C;  4HM2 A;  1O7H A;  3VMH A;  4NBE A;  4NBD A;  2E75 D;  1EZV E;  1VM9 A;  2DE7 D;  4QUP A;  2BMR A;  1VCK A;  4NB8 D;  3H1H E;  1NTK E;  4NBG D;  1O7N A;  2QPZ A;  3GKE A;  2YIU C;  2E76 D;  3GTS A;  4HJL A;  2DE6 D;  1O7M A;  4NBE D;  4NBD D;  1KB9 E;  3DQY A;  2BMQ A;  5HL4 A;  2B1X A;  3H1I E;  2FYU E;  2HMM A;  2I7F A;  1NDO A;  3H1K E;  3AZC A;  2YFL A;  4HM5 A;  5AEU A;  2NWF A;  4NBG A;  3L70 E;  4QDD A;  2HMN A;  3VCA A;  4NB9 D;  3CXH E;  4QDF A;  4NB9 A;  2IBZ E;  4QUQ A;  2E4P A;  1Z02 A;  2FYN C;  3EQQ A;  3L75 E;  2HMO A;  1SQB E;  3L72 E;  4QDF B;  2YFJ A;  3GKQ A;  4HM0 A;  3C0D A;  2BCC E;  3VCP A;  3GB4 A;  4H0L D;  2XRX A;  1Z01 A;  2GBX A;  3GZX A;  4H13 D;  3GL0 A;  4QCK A;  2YFI A;  4NBA D;  4PV1 D;  2DE6 A;  4P1B H;  3L71 E;  1G8J B;  3L74 E;  3VMG A;  3GOB A;  4NBB D;  4HKV A;  2HMJ A;  4NBF D;  1EG9 A;  1WQL A; 
#chains in the Genus database with same CATH topology
 5KKZ C;  1P84 E;  2A06 E;  2E4Q A;  1UUW A;  1NU1 E;  4NBA A;  1L0N E;  2NUK A;  1ULJ A;  3TGU E;  2XR8 A;  3VMI A;  2XSH A;  3GZY A;  1G8K B;  1Q90 C;  3FOU A;  4AIV A;  3BCC E;  2ZT9 D;  3EN1 A;  4HM1 A;  4NBH A;  2HMK A;  4U3F E;  4HM3 A;  1FQT A;  4H44 D;  4PD4 E;  1L0L E;  1SQP E;  3VMI D;  1NTZ E;  3H1L E;  1KYO E;  1PPJ E;  4NBC A;  2B24 A;  2YVJ B;  3GTE A;  2Q3W A;  1SQX E;  1O7P A;  4P1C H;  3CX5 E;  3L73 E;  2BMO A;  2JZA A;  2XSO A;  2ZYL A;  1ZRT E;  3H1J E;  4QUR A;  2DE5 A;  2E74 D;  1SJG A;  4AAY B;  4HM6 A;  1BE3 E;  2NUM A;  3VMG D;  4NBC D;  4EMJ B;  2NVG A;  1UUV A;  4HM8 A;  4NBF A;  1SQQ E;  3CWB E;  4OGQ D;  1RFS A;  1NYK A;  1O7G A;  2JO6 A;  3GL2 A;  4HM7 A;  2QJK C;  3D89 A;  3N0Q A;  4NBB A;  5KLI C;  1Z03 A;  2HML A;  1JM1 A;  2CKF A;  3GCE A;  1RIE A;  4QDC A;  5AEW A;  1NTM E;  1ULI A;  1WW9 A;  4NB8 A;  2GBW A;  1BCC E;  5KLV E;  2DE7 A;  1VF5 D;  4NBH D;  3GCF A;  1O7W A;  3VMH D;  1SQV E;  2DE5 D;  1PP9 E;  2QJP C;  2NVF A;  4HM4 A;  5CXM A;  2NVE A;  5BOK A;  2D2C D;  2QJY C;  4HM2 A;  1O7H A;  3VMH A;  4NBE A;  4NBD A;  2E75 D;  1EZV E;  1VM9 A;  2DE7 D;  4QUP A;  2BMR A;  1VCK A;  4NB8 D;  3H1H E;  1NTK E;  4NBG D;  1O7N A;  2QPZ A;  3GKE A;  2YIU C;  2E76 D;  3GTS A;  4HJL A;  2DE6 D;  1O7M A;  4NBE D;  4NBD D;  1KB9 E;  3DQY A;  2BMQ A;  5HL4 A;  2B1X A;  3H1I E;  2FYU E;  2HMM A;  2I7F A;  1NDO A;  3H1K E;  3AZC A;  2YFL A;  4HM5 A;  5AEU A;  2NWF A;  4NBG A;  3L70 E;  4QDD A;  2HMN A;  3VCA A;  4NB9 D;  3CXH E;  4QDF A;  4NB9 A;  2IBZ E;  4QUQ A;  2E4P A;  1Z02 A;  2FYN C;  3EQQ A;  3L75 E;  2HMO A;  1SQB E;  3L72 E;  4QDF B;  2YFJ A;  3GKQ A;  4HM0 A;  3C0D A;  2BCC E;  3VCP A;  3GB4 A;  4H0L D;  2XRX A;  1Z01 A;  2GBX A;  3GZX A;  4H13 D;  3GL0 A;  4QCK A;  2YFI A;  4NBA D;  4PV1 D;  2DE6 A;  4P1B H;  3L71 E;  1G8J B;  3L74 E;  3VMG A;  3GOB A;  4NBB D;  4HKV A;  2HMJ A;  4NBF D;  1EG9 A;  1WQL A; 
#chains in the Genus database with same CATH homology
 5KKZ C;  1P84 E;  2A06 E;  2E4Q A;  1UUW A;  1NU1 E;  4NBA A;  1L0N E;  2NUK A;  1ULJ A;  3TGU E;  2XR8 A;  3VMI A;  2XSH A;  3GZY A;  1G8K B;  1Q90 C;  3FOU A;  4AIV A;  3BCC E;  2ZT9 D;  3EN1 A;  4HM1 A;  4NBH A;  2HMK A;  4U3F E;  4HM3 A;  1FQT A;  4H44 D;  4PD4 E;  1L0L E;  1SQP E;  3VMI D;  1NTZ E;  3H1L E;  1KYO E;  1PPJ E;  4NBC A;  2B24 A;  2YVJ B;  3GTE A;  2Q3W A;  1SQX E;  1O7P A;  4P1C H;  3CX5 E;  3L73 E;  2BMO A;  2JZA A;  2XSO A;  2ZYL A;  1ZRT E;  3H1J E;  4QUR A;  2DE5 A;  2E74 D;  1SJG A;  4AAY B;  4HM6 A;  1BE3 E;  2NUM A;  3VMG D;  4NBC D;  4EMJ B;  2NVG A;  1UUV A;  4HM8 A;  4NBF A;  1SQQ E;  3CWB E;  4OGQ D;  1RFS A;  1NYK A;  1O7G A;  2JO6 A;  3GL2 A;  4HM7 A;  2QJK C;  3D89 A;  3N0Q A;  4NBB A;  5KLI C;  1Z03 A;  2HML A;  1JM1 A;  2CKF A;  3GCE A;  1RIE A;  4QDC A;  5AEW A;  1NTM E;  1ULI A;  1WW9 A;  4NB8 A;  2GBW A;  1BCC E;  5KLV E;  2DE7 A;  1VF5 D;  4NBH D;  3GCF A;  1O7W A;  3VMH D;  1SQV E;  2DE5 D;  1PP9 E;  2QJP C;  2NVF A;  4HM4 A;  5CXM A;  2NVE A;  5BOK A;  2D2C D;  2QJY C;  4HM2 A;  1O7H A;  3VMH A;  4NBE A;  4NBD A;  2E75 D;  1EZV E;  1VM9 A;  2DE7 D;  4QUP A;  2BMR A;  1VCK A;  4NB8 D;  3H1H E;  1NTK E;  4NBG D;  1O7N A;  2QPZ A;  3GKE A;  2YIU C;  2E76 D;  3GTS A;  4HJL A;  2DE6 D;  1O7M A;  4NBE D;  4NBD D;  1KB9 E;  3DQY A;  2BMQ A;  5HL4 A;  2B1X A;  3H1I E;  2FYU E;  2HMM A;  2I7F A;  1NDO A;  3H1K E;  3AZC A;  2YFL A;  4HM5 A;  5AEU A;  2NWF A;  4NBG A;  3L70 E;  4QDD A;  2HMN A;  3VCA A;  4NB9 D;  3CXH E;  4QDF A;  4NB9 A;  2IBZ E;  4QUQ A;  2E4P A;  1Z02 A;  2FYN C;  3EQQ A;  3L75 E;  2HMO A;  1SQB E;  3L72 E;  4QDF B;  2YFJ A;  3GKQ A;  4HM0 A;  3C0D A;  2BCC E;  3VCP A;  3GB4 A;  4H0L D;  2XRX A;  1Z01 A;  2GBX A;  3GZX A;  4H13 D;  3GL0 A;  4QCK A;  2YFI A;  4NBA D;  4PV1 D;  2DE6 A;  4P1B H;  3L71 E;  1G8J B;  3L74 E;  3VMG A;  3GOB A;  4NBB D;  4HKV A;  2HMJ A;  4NBF D;  1EG9 A;  1WQL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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