1O7NA

Naphthalene 1,2-dioxygenase, ternary complex with dioxygen and indole
Total Genus 162
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
publication title Crystal Structure of Naphthalene Dioxygenase: Side-on Binding of Dioxygen to Iron
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Oxidoreductase
total genus 162
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2002-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1o7nA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1o7nA01
1VCKA 1SQPE 4HM5A 3VCAA 1O7GA 3GB4A 4QURA 4QCKA 4HKVA 4QDFB 4NBBA 4P1CH 3L70E 4QDCA 4HM7A 1Q90C 1ULJA 2YIUC 4NBDD 3VMHA 1SQVE 1NDOA 1PP9E 2E4QA 4AAYB 1RFSA 3GL0A 4NBEA 3VCPA 5AEUA 4NBFA 1WW9A 2E74D 3GL2A 3CXHE 3H1KE 3EN1A 3L75E 4HM3A 4QUPA 1RIEA 4H13D 1O7HA 2BMRA 2XR8A 3CX5E 3L74E 5AEWA 4NBCA 4QDDA 1O7WA 2BCCE 5BOKA 1VF5D 3EQQA 4OGQD 1L0LE 4AIVA 1BE3E 4U3FE 4NBBD 1UUWA 3VMGA 2BMOA 2CKFA 2NVGA 1G8KB 2DE6A 4HM6A 4NB8A 3VMHD 3C0DA 3DQYA 1KB9E 1ULIA 3H1HE 3GTSA 2E75D 4QDFA 3VMIA 4NBGA 4NBED 1JM1A 1UUVA 1EZVE 4HM0A 2HMKA 3AZCA 3GKEA 3D89A 3H1LE 2DE5A 3L71E 3BCCE 1WQLA 2GBWA 2HMNA 1NYKA 2JO6A 1NU1E 4H0LD 2QJYC 5KKZC 2Q3WA 1O7MA 3FOUA 4NBCD 3GKQA 2BMQA 3TGUE 4NBAA 2XSOA 2ZYLA 4P1BH 3H1JE 1SQQE 2QPZA 3H1IE 4PV1D 3VMGD 3GTEA 3N0QA 5HL4A 2FYNC 1Z01A 4H44D 2DE6D 1NTKE 2D2CD 4NB8D 2HMJA 2NUMA 1KYOE 3L73E 1Z02A 3VMID 4NBGD 2QJPC 4HJLA 1G8JB 4NB9A 4NBHA 1FQTA 2HMOA 2DE5D 4HM8A 4QUQA 2XSHA 4HM1A 2IBZE 2DE7A 4NBFD 2HMMA 1NTZE 4HM4A 2HMLA 5KLVE 2E76D 2NUKA 2XRXA 4NBAD 1SJGA 5KLIC 1Z03A 4HM2A 2JZAA 1BCCE 1L0NE 1P84E 2E4PA 2YFJA 2YFLA 1VM9A 2A06E 3GZYA 1PPJE 2YFIA 1NTME 4EMJB 1EG9A 2B24A 3L72E 2B1XA 2GBXA 3GZXA 4NB9D 2QJKC 1O7NA 4NBHD 3GOBA 2YVJB 2NWFA 4PD4E 1SQXE 2DE7D 2I7FA 4NBDA 2ZT9D 2FYUE 2NVFA 3CWBE 3GCFA 1O7PA 1ZRTE 2NVEA 3GCEA 1SQBE 5CXMA
chains in the Genus database with same CATH superfamily
1VCKA 1SQPE 4HM5A 3VCAA 1O7GA 3GB4A 4QURA 4QCKA 4HKVA 4QDFB 4NBBA 4P1CH 3L70E 4QDCA 4HM7A 1Q90C 1ULJA 2YIUC 4NBDD 3VMHA 1SQVE 1NDOA 1PP9E 2E4QA 4AAYB 1RFSA 3GL0A 4NBEA 3VCPA 5AEUA 4NBFA 1WW9A 2E74D 3GL2A 3CXHE 3H1KE 3EN1A 3L75E 4HM3A 4QUPA 1RIEA 4H13D 1O7HA 2BMRA 2XR8A 3CX5E 3L74E 5AEWA 4NBCA 4QDDA 1O7WA 2BCCE 5BOKA 1VF5D 3EQQA 4OGQD 1L0LE 4AIVA 1BE3E 4U3FE 4NBBD 1UUWA 3VMGA 2BMOA 2CKFA 2NVGA 1G8KB 2DE6A 4HM6A 4NB8A 3VMHD 3C0DA 3DQYA 1KB9E 1ULIA 3H1HE 3GTSA 2E75D 4QDFA 3VMIA 4NBGA 4NBED 1JM1A 1UUVA 1EZVE 4HM0A 2HMKA 3AZCA 3GKEA 3D89A 3H1LE 2DE5A 3L71E 3BCCE 1WQLA 2GBWA 2HMNA 1NYKA 2JO6A 1NU1E 4H0LD 2QJYC 5KKZC 2Q3WA 1O7MA 3FOUA 4NBCD 3GKQA 2BMQA 3TGUE 4NBAA 2XSOA 2ZYLA 4P1BH 3H1JE 1SQQE 2QPZA 3H1IE 4PV1D 3VMGD 3GTEA 3N0QA 5HL4A 2FYNC 1Z01A 4H44D 2DE6D 1NTKE 2D2CD 4NB8D 2HMJA 2NUMA 1KYOE 3L73E 1Z02A 3VMID 4NBGD 2QJPC 4HJLA 1G8JB 4NB9A 4NBHA 1FQTA 2HMOA 2DE5D 4HM8A 4QUQA 2XSHA 4HM1A 2IBZE 2DE7A 4NBFD 2HMMA 1NTZE 4HM4A 2HMLA 5KLVE 2E76D 2NUKA 2XRXA 4NBAD 1SJGA 5KLIC 1Z03A 4HM2A 2JZAA 1BCCE 1L0NE 1P84E 2E4PA 2YFJA 2YFLA 1VM9A 2A06E 3GZYA 1PPJE 2YFIA 1NTME 4EMJB 1EG9A 2B24A 3L72E 2B1XA 2GBXA 3GZXA 4NB9D 2QJKC 1O7NA 4NBHD 3GOBA 2YVJB 2NWFA 4PD4E 1SQXE 2DE7D 2I7FA 4NBDA 2ZT9D 2FYUE 2NVFA 3CWBE 3GCFA 1O7PA 1ZRTE 2NVEA 3GCEA 1SQBE 5CXMA
chains in the Genus database with same CATH topology
1VCKA 1SQPE 4HM5A 3VCAA 1O7GA 3GB4A 4QURA 4QCKA 4HKVA 4QDFB 4NBBA 4P1CH 3L70E 4QDCA 4HM7A 1Q90C 1ULJA 2YIUC 4NBDD 3VMHA 1SQVE 1NDOA 1PP9E 2E4QA 4AAYB 1RFSA 3GL0A 4NBEA 3VCPA 5AEUA 4NBFA 1WW9A 2E74D 3GL2A 3CXHE 3H1KE 3EN1A 3L75E 4HM3A 4QUPA 1RIEA 4H13D 1O7HA 2BMRA 2XR8A 3CX5E 3L74E 5AEWA 4NBCA 4QDDA 1O7WA 2BCCE 5BOKA 1VF5D 3EQQA 4OGQD 1L0LE 4AIVA 1BE3E 4U3FE 4NBBD 1UUWA 3VMGA 2BMOA 2CKFA 2NVGA 1G8KB 2DE6A 4HM6A 4NB8A 3VMHD 3C0DA 3DQYA 1KB9E 1ULIA 3H1HE 3GTSA 2E75D 4QDFA 3VMIA 4NBGA 4NBED 1JM1A 1UUVA 1EZVE 4HM0A 2HMKA 3AZCA 3GKEA 3D89A 3H1LE 2DE5A 3L71E 3BCCE 1WQLA 2GBWA 2HMNA 1NYKA 2JO6A 1NU1E 4H0LD 2QJYC 5KKZC 2Q3WA 1O7MA 3FOUA 4NBCD 3GKQA 2BMQA 3TGUE 4NBAA 2XSOA 2ZYLA 4P1BH 3H1JE 1SQQE 2QPZA 3H1IE 4PV1D 3VMGD 3GTEA 3N0QA 5HL4A 2FYNC 1Z01A 4H44D 2DE6D 1NTKE 2D2CD 4NB8D 2HMJA 2NUMA 1KYOE 3L73E 1Z02A 3VMID 4NBGD 2QJPC 4HJLA 1G8JB 4NB9A 4NBHA 1FQTA 2HMOA 2DE5D 4HM8A 4QUQA 2XSHA 4HM1A 2IBZE 2DE7A 4NBFD 2HMMA 1NTZE 4HM4A 2HMLA 5KLVE 2E76D 2NUKA 2XRXA 4NBAD 1SJGA 5KLIC 1Z03A 4HM2A 2JZAA 1BCCE 1L0NE 1P84E 2E4PA 2YFJA 2YFLA 1VM9A 2A06E 3GZYA 1PPJE 2YFIA 1NTME 4EMJB 1EG9A 2B24A 3L72E 2B1XA 2GBXA 3GZXA 4NB9D 2QJKC 1O7NA 4NBHD 3GOBA 2YVJB 2NWFA 4PD4E 1SQXE 2DE7D 2I7FA 4NBDA 2ZT9D 2FYUE 2NVFA 3CWBE 3GCFA 1O7PA 1ZRTE 2NVEA 3GCEA 1SQBE 5CXMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VCK A;  1SQP E;  4HM5 A;  3VCA A;  1O7G A;  3GB4 A;  4QUR A;  4QCK A;  4HKV A;  4QDF B;  4NBB A;  4P1C H;  3L70 E;  4QDC A;  4HM7 A;  1Q90 C;  1ULJ A;  2YIU C;  4NBD D;  3VMH A;  1SQV E;  1NDO A;  1PP9 E;  2E4Q A;  4AAY B;  1RFS A;  3GL0 A;  4NBE A;  3VCP A;  5AEU A;  4NBF A;  1WW9 A;  2E74 D;  3GL2 A;  3CXH E;  3H1K E;  3EN1 A;  3L75 E;  4HM3 A;  4QUP A;  1RIE A;  4H13 D;  1O7H A;  2BMR A;  2XR8 A;  3CX5 E;  3L74 E;  5AEW A;  4NBC A;  4QDD A;  1O7W A;  2BCC E;  5BOK A;  1VF5 D;  3EQQ A;  4OGQ D;  1L0L E;  4AIV A;  1BE3 E;  4U3F E;  4NBB D;  1UUW A;  3VMG A;  2BMO A;  2CKF A;  2NVG A;  1G8K B;  2DE6 A;  4HM6 A;  4NB8 A;  3VMH D;  3C0D A;  3DQY A;  1KB9 E;  1ULI A;  3H1H E;  3GTS A;  2E75 D;  4QDF A;  3VMI A;  4NBG A;  4NBE D;  1JM1 A;  1UUV A;  1EZV E;  4HM0 A;  2HMK A;  3AZC A;  3GKE A;  3D89 A;  3H1L E;  2DE5 A;  3L71 E;  3BCC E;  1WQL A;  2GBW A;  2HMN A;  1NYK A;  2JO6 A;  1NU1 E;  4H0L D;  2QJY C;  5KKZ C;  2Q3W A;  1O7M A;  3FOU A;  4NBC D;  3GKQ A;  2BMQ A;  3TGU E;  4NBA A;  2XSO A;  2ZYL A;  4P1B H;  3H1J E;  1SQQ E;  2QPZ A;  3H1I E;  4PV1 D;  3VMG D;  3GTE A;  3N0Q A;  5HL4 A;  2FYN C;  1Z01 A;  4H44 D;  2DE6 D;  1NTK E;  2D2C D;  4NB8 D;  2HMJ A;  2NUM A;  1KYO E;  3L73 E;  1Z02 A;  3VMI D;  4NBG D;  2QJP C;  4HJL A;  1G8J B;  4NB9 A;  4NBH A;  1FQT A;  2HMO A;  2DE5 D;  4HM8 A;  4QUQ A;  2XSH A;  4HM1 A;  2IBZ E;  2DE7 A;  4NBF D;  2HMM A;  1NTZ E;  4HM4 A;  2HML A;  5KLV E;  2E76 D;  2NUK A;  2XRX A;  4NBA D;  1SJG A;  5KLI C;  1Z03 A;  4HM2 A;  2JZA A;  1BCC E;  1L0N E;  1P84 E;  2E4P A;  2YFJ A;  2YFL A;  1VM9 A;  2A06 E;  3GZY A;  1PPJ E;  2YFI A;  1NTM E;  4EMJ B;  1EG9 A;  2B24 A;  3L72 E;  2B1X A;  2GBX A;  3GZX A;  4NB9 D;  2QJK C;  1O7N A;  4NBH D;  3GOB A;  2YVJ B;  2NWF A;  4PD4 E;  1SQX E;  2DE7 D;  2I7F A;  4NBD A;  2ZT9 D;  2FYU E;  2NVF A;  3CWB E;  3GCF A;  1O7P A;  1ZRT E;  2NVE A;  3GCE A;  1SQB E;  5CXM A; 
#chains in the Genus database with same CATH topology
 1VCK A;  1SQP E;  4HM5 A;  3VCA A;  1O7G A;  3GB4 A;  4QUR A;  4QCK A;  4HKV A;  4QDF B;  4NBB A;  4P1C H;  3L70 E;  4QDC A;  4HM7 A;  1Q90 C;  1ULJ A;  2YIU C;  4NBD D;  3VMH A;  1SQV E;  1NDO A;  1PP9 E;  2E4Q A;  4AAY B;  1RFS A;  3GL0 A;  4NBE A;  3VCP A;  5AEU A;  4NBF A;  1WW9 A;  2E74 D;  3GL2 A;  3CXH E;  3H1K E;  3EN1 A;  3L75 E;  4HM3 A;  4QUP A;  1RIE A;  4H13 D;  1O7H A;  2BMR A;  2XR8 A;  3CX5 E;  3L74 E;  5AEW A;  4NBC A;  4QDD A;  1O7W A;  2BCC E;  5BOK A;  1VF5 D;  3EQQ A;  4OGQ D;  1L0L E;  4AIV A;  1BE3 E;  4U3F E;  4NBB D;  1UUW A;  3VMG A;  2BMO A;  2CKF A;  2NVG A;  1G8K B;  2DE6 A;  4HM6 A;  4NB8 A;  3VMH D;  3C0D A;  3DQY A;  1KB9 E;  1ULI A;  3H1H E;  3GTS A;  2E75 D;  4QDF A;  3VMI A;  4NBG A;  4NBE D;  1JM1 A;  1UUV A;  1EZV E;  4HM0 A;  2HMK A;  3AZC A;  3GKE A;  3D89 A;  3H1L E;  2DE5 A;  3L71 E;  3BCC E;  1WQL A;  2GBW A;  2HMN A;  1NYK A;  2JO6 A;  1NU1 E;  4H0L D;  2QJY C;  5KKZ C;  2Q3W A;  1O7M A;  3FOU A;  4NBC D;  3GKQ A;  2BMQ A;  3TGU E;  4NBA A;  2XSO A;  2ZYL A;  4P1B H;  3H1J E;  1SQQ E;  2QPZ A;  3H1I E;  4PV1 D;  3VMG D;  3GTE A;  3N0Q A;  5HL4 A;  2FYN C;  1Z01 A;  4H44 D;  2DE6 D;  1NTK E;  2D2C D;  4NB8 D;  2HMJ A;  2NUM A;  1KYO E;  3L73 E;  1Z02 A;  3VMI D;  4NBG D;  2QJP C;  4HJL A;  1G8J B;  4NB9 A;  4NBH A;  1FQT A;  2HMO A;  2DE5 D;  4HM8 A;  4QUQ A;  2XSH A;  4HM1 A;  2IBZ E;  2DE7 A;  4NBF D;  2HMM A;  1NTZ E;  4HM4 A;  2HML A;  5KLV E;  2E76 D;  2NUK A;  2XRX A;  4NBA D;  1SJG A;  5KLI C;  1Z03 A;  4HM2 A;  2JZA A;  1BCC E;  1L0N E;  1P84 E;  2E4P A;  2YFJ A;  2YFL A;  1VM9 A;  2A06 E;  3GZY A;  1PPJ E;  2YFI A;  1NTM E;  4EMJ B;  1EG9 A;  2B24 A;  3L72 E;  2B1X A;  2GBX A;  3GZX A;  4NB9 D;  2QJK C;  1O7N A;  4NBH D;  3GOB A;  2YVJ B;  2NWF A;  4PD4 E;  1SQX E;  2DE7 D;  2I7F A;  4NBD A;  2ZT9 D;  2FYU E;  2NVF A;  3CWB E;  3GCF A;  1O7P A;  1ZRT E;  2NVE A;  3GCE A;  1SQB E;  5CXM A; 
#chains in the Genus database with same CATH homology
 1VCK A;  1SQP E;  4HM5 A;  3VCA A;  1O7G A;  3GB4 A;  4QUR A;  4QCK A;  4HKV A;  4QDF B;  4NBB A;  4P1C H;  3L70 E;  4QDC A;  4HM7 A;  1Q90 C;  1ULJ A;  2YIU C;  4NBD D;  3VMH A;  1SQV E;  1NDO A;  1PP9 E;  2E4Q A;  4AAY B;  1RFS A;  3GL0 A;  4NBE A;  3VCP A;  5AEU A;  4NBF A;  1WW9 A;  2E74 D;  3GL2 A;  3CXH E;  3H1K E;  3EN1 A;  3L75 E;  4HM3 A;  4QUP A;  1RIE A;  4H13 D;  1O7H A;  2BMR A;  2XR8 A;  3CX5 E;  3L74 E;  5AEW A;  4NBC A;  4QDD A;  1O7W A;  2BCC E;  5BOK A;  1VF5 D;  3EQQ A;  4OGQ D;  1L0L E;  4AIV A;  1BE3 E;  4U3F E;  4NBB D;  1UUW A;  3VMG A;  2BMO A;  2CKF A;  2NVG A;  1G8K B;  2DE6 A;  4HM6 A;  4NB8 A;  3VMH D;  3C0D A;  3DQY A;  1KB9 E;  1ULI A;  3H1H E;  3GTS A;  2E75 D;  4QDF A;  3VMI A;  4NBG A;  4NBE D;  1JM1 A;  1UUV A;  1EZV E;  4HM0 A;  2HMK A;  3AZC A;  3GKE A;  3D89 A;  3H1L E;  2DE5 A;  3L71 E;  3BCC E;  1WQL A;  2GBW A;  2HMN A;  1NYK A;  2JO6 A;  1NU1 E;  4H0L D;  2QJY C;  5KKZ C;  2Q3W A;  1O7M A;  3FOU A;  4NBC D;  3GKQ A;  2BMQ A;  3TGU E;  4NBA A;  2XSO A;  2ZYL A;  4P1B H;  3H1J E;  1SQQ E;  2QPZ A;  3H1I E;  4PV1 D;  3VMG D;  3GTE A;  3N0Q A;  5HL4 A;  2FYN C;  1Z01 A;  4H44 D;  2DE6 D;  1NTK E;  2D2C D;  4NB8 D;  2HMJ A;  2NUM A;  1KYO E;  3L73 E;  1Z02 A;  3VMI D;  4NBG D;  2QJP C;  4HJL A;  1G8J B;  4NB9 A;  4NBH A;  1FQT A;  2HMO A;  2DE5 D;  4HM8 A;  4QUQ A;  2XSH A;  4HM1 A;  2IBZ E;  2DE7 A;  4NBF D;  2HMM A;  1NTZ E;  4HM4 A;  2HML A;  5KLV E;  2E76 D;  2NUK A;  2XRX A;  4NBA D;  1SJG A;  5KLI C;  1Z03 A;  4HM2 A;  2JZA A;  1BCC E;  1L0N E;  1P84 E;  2E4P A;  2YFJ A;  2YFL A;  1VM9 A;  2A06 E;  3GZY A;  1PPJ E;  2YFI A;  1NTM E;  4EMJ B;  1EG9 A;  2B24 A;  3L72 E;  2B1X A;  2GBX A;  3GZX A;  4NB9 D;  2QJK C;  1O7N A;  4NBH D;  3GOB A;  2YVJ B;  2NWF A;  4PD4 E;  1SQX E;  2DE7 D;  2I7F A;  4NBD A;  2ZT9 D;  2FYU E;  2NVF A;  3CWB E;  3GCF A;  1O7P A;  1ZRT E;  2NVE A;  3GCE A;  1SQB E;  5CXM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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