1O7NA

Naphthalene 1,2-dioxygenase, ternary complex with dioxygen and indole
Total Genus 162
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Pseudomonas putida
publication title Crystal Structure of Naphthalene Dioxygenase: Side-on Binding of Dioxygen to Iron
pubmed doi rcsb
molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
total genus 162
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2002-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1o7nA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1o7nA01
3GCEA 3CWBE 1NTKE 4QURA 1RFSA 1SQVE 3C0DA 3L70E 1WQLA 1P84E 2DE7D 4HM6A 1VF5D 1PP9E 1KB9E 2XSOA 1G8JB 1G8KB 3DQYA 3GOBA 1Z02A 1L0NE 2NVGA 4NBHD 4AAYB 1SQPE 2QJPC 4HM3A 1O7WA 1BE3E 1O7MA 2DE6A 1NU1E 2Q3WA 2YIUC 4NBDA 3GTEA 2CKFA 2I7FA 3GKQA 4PD4E 2GBXA 4QDDA 2BMRA 3FOUA 1NYKA 2NWFA 2NVFA 2HMOA 3VCAA 4NBAA 1VCKA 1ULJA 2XSHA 4NB9A 4NBGD 4NBAD 4HM8A 3EQQA 3GCFA 2B1XA 3L74E 2E75D 3H1KE 3GZXA 3GL2A 2DE7A 2E4PA 3GKEA 4U3FE 4AIVA 4HM5A 1WW9A 3L72E 4NBFA 4NBED 4NBHA 4NBFD 1Z01A 1FQTA 2NUKA 5KLVE 3H1JE 4QUQA 5KKZC 2YFIA 1PPJE 3H1IE 1BCCE 4PV1D 4NB8D 2YFLA 4OGQD 2GBWA 2HMLA 4HM1A 4HM0A 4NBGA 4NBCD 2HMKA 1L0LE 3L71E 5KLIC 1O7NA 4HM2A 1O7GA 2BMQA 3N0QA 4NBBD 2IBZE 2E74D 5BOKA 1SQXE 1SJGA 2JZAA 2E76D 3VMID 1NDOA 1EZVE 4HM7A 4NBEA 1VM9A 2E4QA 2B24A 4QUPA 5AEWA 2BCCE 2FYNC 4EMJB 1KYOE 1O7HA 2DE5D 3H1LE 1SQQE 2A06E 5HL4A 2QJYC 1ULIA 4P1CH 3GL0A 4NB8A 4H0LD 2QPZA 3VMHD 2NUMA 1EG9A 4HKVA 3CX5E 3D89A 1SQBE 3CXHE 4QDFB 2HMJA 3VMGD 4NBCA 1JM1A 1NTME 4QDFA 1Z03A 2BMOA 4NBBA 3L75E 4P1BH 1ZRTE 2YFJA 2QJKC 2HMMA 4HM4A 3VMIA 5CXMA 1O7PA 2FYUE 1UUVA 4QCKA 5AEUA 4H13D 1RIEA 1UUWA 4H44D 2DE5A 2NVEA 2XR8A 1Q90C 2ZT9D 3BCCE 1NTZE 3L73E 4HJLA 3EN1A 2DE6D 3AZCA 3GB4A 4NBDD 3VMHA 3H1HE 2HMNA 2JO6A 3VCPA 4QDCA 3VMGA 2ZYLA 2YVJB 3GTSA 3GZYA 2D2CD 4NB9D 2XRXA 3TGUE
chains in the Genus database with same CATH superfamily
3GCEA 3CWBE 1NTKE 4QURA 1RFSA 1SQVE 3C0DA 3L70E 1WQLA 1P84E 2DE7D 4HM6A 1VF5D 1PP9E 1KB9E 2XSOA 1G8JB 1G8KB 3DQYA 3GOBA 1Z02A 1L0NE 2NVGA 4NBHD 4AAYB 1SQPE 2QJPC 4HM3A 1O7WA 1BE3E 1O7MA 2DE6A 1NU1E 2Q3WA 2YIUC 4NBDA 3GTEA 2CKFA 2I7FA 3GKQA 4PD4E 2GBXA 4QDDA 2BMRA 3FOUA 1NYKA 2NWFA 2NVFA 2HMOA 3VCAA 4NBAA 1VCKA 1ULJA 2XSHA 4NB9A 4NBGD 4NBAD 4HM8A 3EQQA 3GCFA 2B1XA 3L74E 2E75D 3H1KE 3GZXA 3GL2A 2DE7A 2E4PA 3GKEA 4U3FE 4AIVA 4HM5A 1WW9A 3L72E 4NBFA 4NBED 4NBHA 4NBFD 1Z01A 1FQTA 2NUKA 5KLVE 3H1JE 4QUQA 5KKZC 2YFIA 1PPJE 3H1IE 1BCCE 4PV1D 4NB8D 2YFLA 4OGQD 2GBWA 2HMLA 4HM1A 4HM0A 4NBGA 4NBCD 2HMKA 1L0LE 3L71E 5KLIC 1O7NA 4HM2A 1O7GA 2BMQA 3N0QA 4NBBD 2IBZE 2E74D 5BOKA 1SQXE 1SJGA 2JZAA 2E76D 3VMID 1NDOA 1EZVE 4HM7A 4NBEA 1VM9A 2E4QA 2B24A 4QUPA 5AEWA 2BCCE 2FYNC 4EMJB 1KYOE 1O7HA 2DE5D 3H1LE 1SQQE 2A06E 5HL4A 2QJYC 1ULIA 4P1CH 3GL0A 4NB8A 4H0LD 2QPZA 3VMHD 2NUMA 1EG9A 4HKVA 3CX5E 3D89A 1SQBE 3CXHE 4QDFB 2HMJA 3VMGD 4NBCA 1JM1A 1NTME 4QDFA 1Z03A 2BMOA 4NBBA 3L75E 4P1BH 1ZRTE 2YFJA 2QJKC 2HMMA 4HM4A 3VMIA 5CXMA 1O7PA 2FYUE 1UUVA 4QCKA 5AEUA 4H13D 1RIEA 1UUWA 4H44D 2DE5A 2NVEA 2XR8A 1Q90C 2ZT9D 3BCCE 1NTZE 3L73E 4HJLA 3EN1A 2DE6D 3AZCA 3GB4A 4NBDD 3VMHA 3H1HE 2HMNA 2JO6A 3VCPA 4QDCA 3VMGA 2ZYLA 2YVJB 3GTSA 3GZYA 2D2CD 4NB9D 2XRXA 3TGUE
chains in the Genus database with same CATH topology
3GCEA 3CWBE 1NTKE 4QURA 1RFSA 1SQVE 3C0DA 3L70E 1WQLA 1P84E 2DE7D 4HM6A 1VF5D 1PP9E 1KB9E 2XSOA 1G8JB 1G8KB 3DQYA 3GOBA 1Z02A 1L0NE 2NVGA 4NBHD 4AAYB 1SQPE 2QJPC 4HM3A 1O7WA 1BE3E 1O7MA 2DE6A 1NU1E 2Q3WA 2YIUC 4NBDA 3GTEA 2CKFA 2I7FA 3GKQA 4PD4E 2GBXA 4QDDA 2BMRA 3FOUA 1NYKA 2NWFA 2NVFA 2HMOA 3VCAA 4NBAA 1VCKA 1ULJA 2XSHA 4NB9A 4NBGD 4NBAD 4HM8A 3EQQA 3GCFA 2B1XA 3L74E 2E75D 3H1KE 3GZXA 3GL2A 2DE7A 2E4PA 3GKEA 4U3FE 4AIVA 4HM5A 1WW9A 3L72E 4NBFA 4NBED 4NBHA 4NBFD 1Z01A 1FQTA 2NUKA 5KLVE 3H1JE 4QUQA 5KKZC 2YFIA 1PPJE 3H1IE 1BCCE 4PV1D 4NB8D 2YFLA 4OGQD 2GBWA 2HMLA 4HM1A 4HM0A 4NBGA 4NBCD 2HMKA 1L0LE 3L71E 5KLIC 1O7NA 4HM2A 1O7GA 2BMQA 3N0QA 4NBBD 2IBZE 2E74D 5BOKA 1SQXE 1SJGA 2JZAA 2E76D 3VMID 1NDOA 1EZVE 4HM7A 4NBEA 1VM9A 2E4QA 2B24A 4QUPA 5AEWA 2BCCE 2FYNC 4EMJB 1KYOE 1O7HA 2DE5D 3H1LE 1SQQE 2A06E 5HL4A 2QJYC 1ULIA 4P1CH 3GL0A 4NB8A 4H0LD 2QPZA 3VMHD 2NUMA 1EG9A 4HKVA 3CX5E 3D89A 1SQBE 3CXHE 4QDFB 2HMJA 3VMGD 4NBCA 1JM1A 1NTME 4QDFA 1Z03A 2BMOA 4NBBA 3L75E 4P1BH 1ZRTE 2YFJA 2QJKC 2HMMA 4HM4A 3VMIA 5CXMA 1O7PA 2FYUE 1UUVA 4QCKA 5AEUA 4H13D 1RIEA 1UUWA 4H44D 2DE5A 2NVEA 2XR8A 1Q90C 2ZT9D 3BCCE 1NTZE 3L73E 4HJLA 3EN1A 2DE6D 3AZCA 3GB4A 4NBDD 3VMHA 3H1HE 2HMNA 2JO6A 3VCPA 4QDCA 3VMGA 2ZYLA 2YVJB 3GTSA 3GZYA 2D2CD 4NB9D 2XRXA 3TGUE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GCE A;  3CWB E;  1NTK E;  4QUR A;  1RFS A;  1SQV E;  3C0D A;  3L70 E;  1WQL A;  1P84 E;  2DE7 D;  4HM6 A;  1VF5 D;  1PP9 E;  1KB9 E;  2XSO A;  1G8J B;  1G8K B;  3DQY A;  3GOB A;  1Z02 A;  1L0N E;  2NVG A;  4NBH D;  4AAY B;  1SQP E;  2QJP C;  4HM3 A;  1O7W A;  1BE3 E;  1O7M A;  2DE6 A;  1NU1 E;  2Q3W A;  2YIU C;  4NBD A;  3GTE A;  2CKF A;  2I7F A;  3GKQ A;  4PD4 E;  2GBX A;  4QDD A;  2BMR A;  3FOU A;  1NYK A;  2NWF A;  2NVF A;  2HMO A;  3VCA A;  4NBA A;  1VCK A;  1ULJ A;  2XSH A;  4NB9 A;  4NBG D;  4NBA D;  4HM8 A;  3EQQ A;  3GCF A;  2B1X A;  3L74 E;  2E75 D;  3H1K E;  3GZX A;  3GL2 A;  2DE7 A;  2E4P A;  3GKE A;  4U3F E;  4AIV A;  4HM5 A;  1WW9 A;  3L72 E;  4NBF A;  4NBE D;  4NBH A;  4NBF D;  1Z01 A;  1FQT A;  2NUK A;  5KLV E;  3H1J E;  4QUQ A;  5KKZ C;  2YFI A;  1PPJ E;  3H1I E;  1BCC E;  4PV1 D;  4NB8 D;  2YFL A;  4OGQ D;  2GBW A;  2HML A;  4HM1 A;  4HM0 A;  4NBG A;  4NBC D;  2HMK A;  1L0L E;  3L71 E;  5KLI C;  1O7N A;  4HM2 A;  1O7G A;  2BMQ A;  3N0Q A;  4NBB D;  2IBZ E;  2E74 D;  5BOK A;  1SQX E;  1SJG A;  2JZA A;  2E76 D;  3VMI D;  1NDO A;  1EZV E;  4HM7 A;  4NBE A;  1VM9 A;  2E4Q A;  2B24 A;  4QUP A;  5AEW A;  2BCC E;  2FYN C;  4EMJ B;  1KYO E;  1O7H A;  2DE5 D;  3H1L E;  1SQQ E;  2A06 E;  5HL4 A;  2QJY C;  1ULI A;  4P1C H;  3GL0 A;  4NB8 A;  4H0L D;  2QPZ A;  3VMH D;  2NUM A;  1EG9 A;  4HKV A;  3CX5 E;  3D89 A;  1SQB E;  3CXH E;  4QDF B;  2HMJ A;  3VMG D;  4NBC A;  1JM1 A;  1NTM E;  4QDF A;  1Z03 A;  2BMO A;  4NBB A;  3L75 E;  4P1B H;  1ZRT E;  2YFJ A;  2QJK C;  2HMM A;  4HM4 A;  3VMI A;  5CXM A;  1O7P A;  2FYU E;  1UUV A;  4QCK A;  5AEU A;  4H13 D;  1RIE A;  1UUW A;  4H44 D;  2DE5 A;  2NVE A;  2XR8 A;  1Q90 C;  2ZT9 D;  3BCC E;  1NTZ E;  3L73 E;  4HJL A;  3EN1 A;  2DE6 D;  3AZC A;  3GB4 A;  4NBD D;  3VMH A;  3H1H E;  2HMN A;  2JO6 A;  3VCP A;  4QDC A;  3VMG A;  2ZYL A;  2YVJ B;  3GTS A;  3GZY A;  2D2C D;  4NB9 D;  2XRX A;  3TGU E; 
#chains in the Genus database with same CATH topology
 3GCE A;  3CWB E;  1NTK E;  4QUR A;  1RFS A;  1SQV E;  3C0D A;  3L70 E;  1WQL A;  1P84 E;  2DE7 D;  4HM6 A;  1VF5 D;  1PP9 E;  1KB9 E;  2XSO A;  1G8J B;  1G8K B;  3DQY A;  3GOB A;  1Z02 A;  1L0N E;  2NVG A;  4NBH D;  4AAY B;  1SQP E;  2QJP C;  4HM3 A;  1O7W A;  1BE3 E;  1O7M A;  2DE6 A;  1NU1 E;  2Q3W A;  2YIU C;  4NBD A;  3GTE A;  2CKF A;  2I7F A;  3GKQ A;  4PD4 E;  2GBX A;  4QDD A;  2BMR A;  3FOU A;  1NYK A;  2NWF A;  2NVF A;  2HMO A;  3VCA A;  4NBA A;  1VCK A;  1ULJ A;  2XSH A;  4NB9 A;  4NBG D;  4NBA D;  4HM8 A;  3EQQ A;  3GCF A;  2B1X A;  3L74 E;  2E75 D;  3H1K E;  3GZX A;  3GL2 A;  2DE7 A;  2E4P A;  3GKE A;  4U3F E;  4AIV A;  4HM5 A;  1WW9 A;  3L72 E;  4NBF A;  4NBE D;  4NBH A;  4NBF D;  1Z01 A;  1FQT A;  2NUK A;  5KLV E;  3H1J E;  4QUQ A;  5KKZ C;  2YFI A;  1PPJ E;  3H1I E;  1BCC E;  4PV1 D;  4NB8 D;  2YFL A;  4OGQ D;  2GBW A;  2HML A;  4HM1 A;  4HM0 A;  4NBG A;  4NBC D;  2HMK A;  1L0L E;  3L71 E;  5KLI C;  1O7N A;  4HM2 A;  1O7G A;  2BMQ A;  3N0Q A;  4NBB D;  2IBZ E;  2E74 D;  5BOK A;  1SQX E;  1SJG A;  2JZA A;  2E76 D;  3VMI D;  1NDO A;  1EZV E;  4HM7 A;  4NBE A;  1VM9 A;  2E4Q A;  2B24 A;  4QUP A;  5AEW A;  2BCC E;  2FYN C;  4EMJ B;  1KYO E;  1O7H A;  2DE5 D;  3H1L E;  1SQQ E;  2A06 E;  5HL4 A;  2QJY C;  1ULI A;  4P1C H;  3GL0 A;  4NB8 A;  4H0L D;  2QPZ A;  3VMH D;  2NUM A;  1EG9 A;  4HKV A;  3CX5 E;  3D89 A;  1SQB E;  3CXH E;  4QDF B;  2HMJ A;  3VMG D;  4NBC A;  1JM1 A;  1NTM E;  4QDF A;  1Z03 A;  2BMO A;  4NBB A;  3L75 E;  4P1B H;  1ZRT E;  2YFJ A;  2QJK C;  2HMM A;  4HM4 A;  3VMI A;  5CXM A;  1O7P A;  2FYU E;  1UUV A;  4QCK A;  5AEU A;  4H13 D;  1RIE A;  1UUW A;  4H44 D;  2DE5 A;  2NVE A;  2XR8 A;  1Q90 C;  2ZT9 D;  3BCC E;  1NTZ E;  3L73 E;  4HJL A;  3EN1 A;  2DE6 D;  3AZC A;  3GB4 A;  4NBD D;  3VMH A;  3H1H E;  2HMN A;  2JO6 A;  3VCP A;  4QDC A;  3VMG A;  2ZYL A;  2YVJ B;  3GTS A;  3GZY A;  2D2C D;  4NB9 D;  2XRX A;  3TGU E; 
#chains in the Genus database with same CATH homology
 3GCE A;  3CWB E;  1NTK E;  4QUR A;  1RFS A;  1SQV E;  3C0D A;  3L70 E;  1WQL A;  1P84 E;  2DE7 D;  4HM6 A;  1VF5 D;  1PP9 E;  1KB9 E;  2XSO A;  1G8J B;  1G8K B;  3DQY A;  3GOB A;  1Z02 A;  1L0N E;  2NVG A;  4NBH D;  4AAY B;  1SQP E;  2QJP C;  4HM3 A;  1O7W A;  1BE3 E;  1O7M A;  2DE6 A;  1NU1 E;  2Q3W A;  2YIU C;  4NBD A;  3GTE A;  2CKF A;  2I7F A;  3GKQ A;  4PD4 E;  2GBX A;  4QDD A;  2BMR A;  3FOU A;  1NYK A;  2NWF A;  2NVF A;  2HMO A;  3VCA A;  4NBA A;  1VCK A;  1ULJ A;  2XSH A;  4NB9 A;  4NBG D;  4NBA D;  4HM8 A;  3EQQ A;  3GCF A;  2B1X A;  3L74 E;  2E75 D;  3H1K E;  3GZX A;  3GL2 A;  2DE7 A;  2E4P A;  3GKE A;  4U3F E;  4AIV A;  4HM5 A;  1WW9 A;  3L72 E;  4NBF A;  4NBE D;  4NBH A;  4NBF D;  1Z01 A;  1FQT A;  2NUK A;  5KLV E;  3H1J E;  4QUQ A;  5KKZ C;  2YFI A;  1PPJ E;  3H1I E;  1BCC E;  4PV1 D;  4NB8 D;  2YFL A;  4OGQ D;  2GBW A;  2HML A;  4HM1 A;  4HM0 A;  4NBG A;  4NBC D;  2HMK A;  1L0L E;  3L71 E;  5KLI C;  1O7N A;  4HM2 A;  1O7G A;  2BMQ A;  3N0Q A;  4NBB D;  2IBZ E;  2E74 D;  5BOK A;  1SQX E;  1SJG A;  2JZA A;  2E76 D;  3VMI D;  1NDO A;  1EZV E;  4HM7 A;  4NBE A;  1VM9 A;  2E4Q A;  2B24 A;  4QUP A;  5AEW A;  2BCC E;  2FYN C;  4EMJ B;  1KYO E;  1O7H A;  2DE5 D;  3H1L E;  1SQQ E;  2A06 E;  5HL4 A;  2QJY C;  1ULI A;  4P1C H;  3GL0 A;  4NB8 A;  4H0L D;  2QPZ A;  3VMH D;  2NUM A;  1EG9 A;  4HKV A;  3CX5 E;  3D89 A;  1SQB E;  3CXH E;  4QDF B;  2HMJ A;  3VMG D;  4NBC A;  1JM1 A;  1NTM E;  4QDF A;  1Z03 A;  2BMO A;  4NBB A;  3L75 E;  4P1B H;  1ZRT E;  2YFJ A;  2QJK C;  2HMM A;  4HM4 A;  3VMI A;  5CXM A;  1O7P A;  2FYU E;  1UUV A;  4QCK A;  5AEU A;  4H13 D;  1RIE A;  1UUW A;  4H44 D;  2DE5 A;  2NVE A;  2XR8 A;  1Q90 C;  2ZT9 D;  3BCC E;  1NTZ E;  3L73 E;  4HJL A;  3EN1 A;  2DE6 D;  3AZC A;  3GB4 A;  4NBD D;  3VMH A;  3H1H E;  2HMN A;  2JO6 A;  3VCP A;  4QDC A;  3VMG A;  2ZYL A;  2YVJ B;  3GTS A;  3GZY A;  2D2C D;  4NB9 D;  2XRX A;  3TGU E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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