1O7NA

Naphthalene 1,2-dioxygenase, ternary complex with dioxygen and indole
Total Genus 162
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
447
structure length
447
Chain Sequence
b'MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
publication title Crystal Structure of Naphthalene Dioxygenase: Side-on Binding of Dioxygen to Iron
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Oxidoreductase
total genus 162
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2002-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1o7nA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1o7nA01
1KB9E 2HMJA 1ZRTE 4NBEA 1UUWA 2IBZE 4AAYB 1O7WA 1NU1E 2HMMA 4QUQA 4P1CH 3H1KE 2A06E 3L71E 3H1HE 4PD4E 3H1JE 4QCKA 3CX5E 2ZT9D 2JZAA 1SQPE 2QPZA 1P84E 3FOUA 4HM8A 4QDDA 4QDFB 1Z03A 2DE5A 5AEUA 1ULIA 4NBGD 2DE5D 2Q3WA 5KKZC 1SQQE 2JO6A 3GL2A 3L70E 1O7MA 4HM2A 1VCKA 1WQLA 2B24A 2ZYLA 2YIUC 4EMJB 2E76D 1Z01A 1EZVE 1EG9A 4NBFA 1O7NA 1G8JB 1O7PA 1SJGA 3VMGA 3L73E 1PP9E 4NBFD 4HM5A 1NTZE 3VMGD 1NYKA 3EQQA 2NWFA 2E75D 3H1LE 3VMID 3GCFA 4HM7A 4HM3A 1JM1A 2NUMA 3C0DA 2YFIA 2GBXA 2YVJB 4NBGA 3GKQA 2FYUE 4QUPA 2B1XA 5CXMA 4HM0A 3GTEA 2HMLA 4NB8A 2XSOA 4NBCA 3GCEA 2BMRA 3EN1A 2CKFA 5BOKA 2GBWA 4NB8D 1ULJA 4NBCD 3VMHA 4QDFA 1FQTA 2XRXA 3VMHD 5HL4A 1NTME 3VMIA 1L0NE 2BMQA 3D89A 3N0QA 4H0LD 3VCPA 3L74E 5KLIC 5AEWA 2HMKA 2HMNA 4HM6A 1SQBE 4OGQD 4QURA 3L75E 1Z02A 4NBBD 3VCAA 2HMOA 4QDCA 2E4QA 4NBDA 1UUVA 1O7GA 4AIVA 1O7HA 4NB9D 4H13D 2NVGA 3GL0A 4NBDD 2DE7A 1RFSA 5KLVE 2D2CD 1VM9A 4U3FE 2DE7D 3AZCA 2NVEA 2E74D 4NBHA 2BCCE 3L72E 4PV1D 2XR8A 4NBHD 4HM4A 4NBED 3CXHE 4HJLA 3GTSA 3BCCE 1NDOA 3CWBE 1SQVE 1WW9A 2DE6A 2BMOA 3GZYA 2XSHA 4HM1A 3GOBA 2QJYC 1SQXE 2YFLA 2DE6D 1BE3E 4P1BH 1G8KB 4NBAA 4NBBA 1PPJE 2NUKA 1L0LE 2NVFA 3GB4A 3GZXA 3TGUE 4H44D 4NBAD 1RIEA 3DQYA 4HKVA 2QJPC 2QJKC 1Q90C 4NB9A 2E4PA 3GKEA 2I7FA 3H1IE 2FYNC 1BCCE 2YFJA 1VF5D 1KYOE 1NTKE
chains in the Genus database with same CATH superfamily
1KB9E 2HMJA 1ZRTE 4NBEA 1UUWA 2IBZE 4AAYB 1O7WA 1NU1E 2HMMA 4QUQA 4P1CH 3H1KE 2A06E 3L71E 3H1HE 4PD4E 3H1JE 4QCKA 3CX5E 2ZT9D 2JZAA 1SQPE 2QPZA 1P84E 3FOUA 4HM8A 4QDDA 4QDFB 1Z03A 2DE5A 5AEUA 1ULIA 4NBGD 2DE5D 2Q3WA 5KKZC 1SQQE 2JO6A 3GL2A 3L70E 1O7MA 4HM2A 1VCKA 1WQLA 2B24A 2ZYLA 2YIUC 4EMJB 2E76D 1Z01A 1EZVE 1EG9A 4NBFA 1O7NA 1G8JB 1O7PA 1SJGA 3VMGA 3L73E 1PP9E 4NBFD 4HM5A 1NTZE 3VMGD 1NYKA 3EQQA 2NWFA 2E75D 3H1LE 3VMID 3GCFA 4HM7A 4HM3A 1JM1A 2NUMA 3C0DA 2YFIA 2GBXA 2YVJB 4NBGA 3GKQA 2FYUE 4QUPA 2B1XA 5CXMA 4HM0A 3GTEA 2HMLA 4NB8A 2XSOA 4NBCA 3GCEA 2BMRA 3EN1A 2CKFA 5BOKA 2GBWA 4NB8D 1ULJA 4NBCD 3VMHA 4QDFA 1FQTA 2XRXA 3VMHD 5HL4A 1NTME 3VMIA 1L0NE 2BMQA 3D89A 3N0QA 4H0LD 3VCPA 3L74E 5KLIC 5AEWA 2HMKA 2HMNA 4HM6A 1SQBE 4OGQD 4QURA 3L75E 1Z02A 4NBBD 3VCAA 2HMOA 4QDCA 2E4QA 4NBDA 1UUVA 1O7GA 4AIVA 1O7HA 4NB9D 4H13D 2NVGA 3GL0A 4NBDD 2DE7A 1RFSA 5KLVE 2D2CD 1VM9A 4U3FE 2DE7D 3AZCA 2NVEA 2E74D 4NBHA 2BCCE 3L72E 4PV1D 2XR8A 4NBHD 4HM4A 4NBED 3CXHE 4HJLA 3GTSA 3BCCE 1NDOA 3CWBE 1SQVE 1WW9A 2DE6A 2BMOA 3GZYA 2XSHA 4HM1A 3GOBA 2QJYC 1SQXE 2YFLA 2DE6D 1BE3E 4P1BH 1G8KB 4NBAA 4NBBA 1PPJE 2NUKA 1L0LE 2NVFA 3GB4A 3GZXA 3TGUE 4H44D 4NBAD 1RIEA 3DQYA 4HKVA 2QJPC 2QJKC 1Q90C 4NB9A 2E4PA 3GKEA 2I7FA 3H1IE 2FYNC 1BCCE 2YFJA 1VF5D 1KYOE 1NTKE
chains in the Genus database with same CATH topology
1KB9E 2HMJA 1ZRTE 4NBEA 1UUWA 2IBZE 4AAYB 1O7WA 1NU1E 2HMMA 4QUQA 4P1CH 3H1KE 2A06E 3L71E 3H1HE 4PD4E 3H1JE 4QCKA 3CX5E 2ZT9D 2JZAA 1SQPE 2QPZA 1P84E 3FOUA 4HM8A 4QDDA 4QDFB 1Z03A 2DE5A 5AEUA 1ULIA 4NBGD 2DE5D 2Q3WA 5KKZC 1SQQE 2JO6A 3GL2A 3L70E 1O7MA 4HM2A 1VCKA 1WQLA 2B24A 2ZYLA 2YIUC 4EMJB 2E76D 1Z01A 1EZVE 1EG9A 4NBFA 1O7NA 1G8JB 1O7PA 1SJGA 3VMGA 3L73E 1PP9E 4NBFD 4HM5A 1NTZE 3VMGD 1NYKA 3EQQA 2NWFA 2E75D 3H1LE 3VMID 3GCFA 4HM7A 4HM3A 1JM1A 2NUMA 3C0DA 2YFIA 2GBXA 2YVJB 4NBGA 3GKQA 2FYUE 4QUPA 2B1XA 5CXMA 4HM0A 3GTEA 2HMLA 4NB8A 2XSOA 4NBCA 3GCEA 2BMRA 3EN1A 2CKFA 5BOKA 2GBWA 4NB8D 1ULJA 4NBCD 3VMHA 4QDFA 1FQTA 2XRXA 3VMHD 5HL4A 1NTME 3VMIA 1L0NE 2BMQA 3D89A 3N0QA 4H0LD 3VCPA 3L74E 5KLIC 5AEWA 2HMKA 2HMNA 4HM6A 1SQBE 4OGQD 4QURA 3L75E 1Z02A 4NBBD 3VCAA 2HMOA 4QDCA 2E4QA 4NBDA 1UUVA 1O7GA 4AIVA 1O7HA 4NB9D 4H13D 2NVGA 3GL0A 4NBDD 2DE7A 1RFSA 5KLVE 2D2CD 1VM9A 4U3FE 2DE7D 3AZCA 2NVEA 2E74D 4NBHA 2BCCE 3L72E 4PV1D 2XR8A 4NBHD 4HM4A 4NBED 3CXHE 4HJLA 3GTSA 3BCCE 1NDOA 3CWBE 1SQVE 1WW9A 2DE6A 2BMOA 3GZYA 2XSHA 4HM1A 3GOBA 2QJYC 1SQXE 2YFLA 2DE6D 1BE3E 4P1BH 1G8KB 4NBAA 4NBBA 1PPJE 2NUKA 1L0LE 2NVFA 3GB4A 3GZXA 3TGUE 4H44D 4NBAD 1RIEA 3DQYA 4HKVA 2QJPC 2QJKC 1Q90C 4NB9A 2E4PA 3GKEA 2I7FA 3H1IE 2FYNC 1BCCE 2YFJA 1VF5D 1KYOE 1NTKE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KB9 E;  2HMJ A;  1ZRT E;  4NBE A;  1UUW A;  2IBZ E;  4AAY B;  1O7W A;  1NU1 E;  2HMM A;  4QUQ A;  4P1C H;  3H1K E;  2A06 E;  3L71 E;  3H1H E;  4PD4 E;  3H1J E;  4QCK A;  3CX5 E;  2ZT9 D;  2JZA A;  1SQP E;  2QPZ A;  1P84 E;  3FOU A;  4HM8 A;  4QDD A;  4QDF B;  1Z03 A;  2DE5 A;  5AEU A;  1ULI A;  4NBG D;  2DE5 D;  2Q3W A;  5KKZ C;  1SQQ E;  2JO6 A;  3GL2 A;  3L70 E;  1O7M A;  4HM2 A;  1VCK A;  1WQL A;  2B24 A;  2ZYL A;  2YIU C;  4EMJ B;  2E76 D;  1Z01 A;  1EZV E;  1EG9 A;  4NBF A;  1O7N A;  1G8J B;  1O7P A;  1SJG A;  3VMG A;  3L73 E;  1PP9 E;  4NBF D;  4HM5 A;  1NTZ E;  3VMG D;  1NYK A;  3EQQ A;  2NWF A;  2E75 D;  3H1L E;  3VMI D;  3GCF A;  4HM7 A;  4HM3 A;  1JM1 A;  2NUM A;  3C0D A;  2YFI A;  2GBX A;  2YVJ B;  4NBG A;  3GKQ A;  2FYU E;  4QUP A;  2B1X A;  5CXM A;  4HM0 A;  3GTE A;  2HML A;  4NB8 A;  2XSO A;  4NBC A;  3GCE A;  2BMR A;  3EN1 A;  2CKF A;  5BOK A;  2GBW A;  4NB8 D;  1ULJ A;  4NBC D;  3VMH A;  4QDF A;  1FQT A;  2XRX A;  3VMH D;  5HL4 A;  1NTM E;  3VMI A;  1L0N E;  2BMQ A;  3D89 A;  3N0Q A;  4H0L D;  3VCP A;  3L74 E;  5KLI C;  5AEW A;  2HMK A;  2HMN A;  4HM6 A;  1SQB E;  4OGQ D;  4QUR A;  3L75 E;  1Z02 A;  4NBB D;  3VCA A;  2HMO A;  4QDC A;  2E4Q A;  4NBD A;  1UUV A;  1O7G A;  4AIV A;  1O7H A;  4NB9 D;  4H13 D;  2NVG A;  3GL0 A;  4NBD D;  2DE7 A;  1RFS A;  5KLV E;  2D2C D;  1VM9 A;  4U3F E;  2DE7 D;  3AZC A;  2NVE A;  2E74 D;  4NBH A;  2BCC E;  3L72 E;  4PV1 D;  2XR8 A;  4NBH D;  4HM4 A;  4NBE D;  3CXH E;  4HJL A;  3GTS A;  3BCC E;  1NDO A;  3CWB E;  1SQV E;  1WW9 A;  2DE6 A;  2BMO A;  3GZY A;  2XSH A;  4HM1 A;  3GOB A;  2QJY C;  1SQX E;  2YFL A;  2DE6 D;  1BE3 E;  4P1B H;  1G8K B;  4NBA A;  4NBB A;  1PPJ E;  2NUK A;  1L0L E;  2NVF A;  3GB4 A;  3GZX A;  3TGU E;  4H44 D;  4NBA D;  1RIE A;  3DQY A;  4HKV A;  2QJP C;  2QJK C;  1Q90 C;  4NB9 A;  2E4P A;  3GKE A;  2I7F A;  3H1I E;  2FYN C;  1BCC E;  2YFJ A;  1VF5 D;  1KYO E;  1NTK E; 
#chains in the Genus database with same CATH topology
 1KB9 E;  2HMJ A;  1ZRT E;  4NBE A;  1UUW A;  2IBZ E;  4AAY B;  1O7W A;  1NU1 E;  2HMM A;  4QUQ A;  4P1C H;  3H1K E;  2A06 E;  3L71 E;  3H1H E;  4PD4 E;  3H1J E;  4QCK A;  3CX5 E;  2ZT9 D;  2JZA A;  1SQP E;  2QPZ A;  1P84 E;  3FOU A;  4HM8 A;  4QDD A;  4QDF B;  1Z03 A;  2DE5 A;  5AEU A;  1ULI A;  4NBG D;  2DE5 D;  2Q3W A;  5KKZ C;  1SQQ E;  2JO6 A;  3GL2 A;  3L70 E;  1O7M A;  4HM2 A;  1VCK A;  1WQL A;  2B24 A;  2ZYL A;  2YIU C;  4EMJ B;  2E76 D;  1Z01 A;  1EZV E;  1EG9 A;  4NBF A;  1O7N A;  1G8J B;  1O7P A;  1SJG A;  3VMG A;  3L73 E;  1PP9 E;  4NBF D;  4HM5 A;  1NTZ E;  3VMG D;  1NYK A;  3EQQ A;  2NWF A;  2E75 D;  3H1L E;  3VMI D;  3GCF A;  4HM7 A;  4HM3 A;  1JM1 A;  2NUM A;  3C0D A;  2YFI A;  2GBX A;  2YVJ B;  4NBG A;  3GKQ A;  2FYU E;  4QUP A;  2B1X A;  5CXM A;  4HM0 A;  3GTE A;  2HML A;  4NB8 A;  2XSO A;  4NBC A;  3GCE A;  2BMR A;  3EN1 A;  2CKF A;  5BOK A;  2GBW A;  4NB8 D;  1ULJ A;  4NBC D;  3VMH A;  4QDF A;  1FQT A;  2XRX A;  3VMH D;  5HL4 A;  1NTM E;  3VMI A;  1L0N E;  2BMQ A;  3D89 A;  3N0Q A;  4H0L D;  3VCP A;  3L74 E;  5KLI C;  5AEW A;  2HMK A;  2HMN A;  4HM6 A;  1SQB E;  4OGQ D;  4QUR A;  3L75 E;  1Z02 A;  4NBB D;  3VCA A;  2HMO A;  4QDC A;  2E4Q A;  4NBD A;  1UUV A;  1O7G A;  4AIV A;  1O7H A;  4NB9 D;  4H13 D;  2NVG A;  3GL0 A;  4NBD D;  2DE7 A;  1RFS A;  5KLV E;  2D2C D;  1VM9 A;  4U3F E;  2DE7 D;  3AZC A;  2NVE A;  2E74 D;  4NBH A;  2BCC E;  3L72 E;  4PV1 D;  2XR8 A;  4NBH D;  4HM4 A;  4NBE D;  3CXH E;  4HJL A;  3GTS A;  3BCC E;  1NDO A;  3CWB E;  1SQV E;  1WW9 A;  2DE6 A;  2BMO A;  3GZY A;  2XSH A;  4HM1 A;  3GOB A;  2QJY C;  1SQX E;  2YFL A;  2DE6 D;  1BE3 E;  4P1B H;  1G8K B;  4NBA A;  4NBB A;  1PPJ E;  2NUK A;  1L0L E;  2NVF A;  3GB4 A;  3GZX A;  3TGU E;  4H44 D;  4NBA D;  1RIE A;  3DQY A;  4HKV A;  2QJP C;  2QJK C;  1Q90 C;  4NB9 A;  2E4P A;  3GKE A;  2I7F A;  3H1I E;  2FYN C;  1BCC E;  2YFJ A;  1VF5 D;  1KYO E;  1NTK E; 
#chains in the Genus database with same CATH homology
 1KB9 E;  2HMJ A;  1ZRT E;  4NBE A;  1UUW A;  2IBZ E;  4AAY B;  1O7W A;  1NU1 E;  2HMM A;  4QUQ A;  4P1C H;  3H1K E;  2A06 E;  3L71 E;  3H1H E;  4PD4 E;  3H1J E;  4QCK A;  3CX5 E;  2ZT9 D;  2JZA A;  1SQP E;  2QPZ A;  1P84 E;  3FOU A;  4HM8 A;  4QDD A;  4QDF B;  1Z03 A;  2DE5 A;  5AEU A;  1ULI A;  4NBG D;  2DE5 D;  2Q3W A;  5KKZ C;  1SQQ E;  2JO6 A;  3GL2 A;  3L70 E;  1O7M A;  4HM2 A;  1VCK A;  1WQL A;  2B24 A;  2ZYL A;  2YIU C;  4EMJ B;  2E76 D;  1Z01 A;  1EZV E;  1EG9 A;  4NBF A;  1O7N A;  1G8J B;  1O7P A;  1SJG A;  3VMG A;  3L73 E;  1PP9 E;  4NBF D;  4HM5 A;  1NTZ E;  3VMG D;  1NYK A;  3EQQ A;  2NWF A;  2E75 D;  3H1L E;  3VMI D;  3GCF A;  4HM7 A;  4HM3 A;  1JM1 A;  2NUM A;  3C0D A;  2YFI A;  2GBX A;  2YVJ B;  4NBG A;  3GKQ A;  2FYU E;  4QUP A;  2B1X A;  5CXM A;  4HM0 A;  3GTE A;  2HML A;  4NB8 A;  2XSO A;  4NBC A;  3GCE A;  2BMR A;  3EN1 A;  2CKF A;  5BOK A;  2GBW A;  4NB8 D;  1ULJ A;  4NBC D;  3VMH A;  4QDF A;  1FQT A;  2XRX A;  3VMH D;  5HL4 A;  1NTM E;  3VMI A;  1L0N E;  2BMQ A;  3D89 A;  3N0Q A;  4H0L D;  3VCP A;  3L74 E;  5KLI C;  5AEW A;  2HMK A;  2HMN A;  4HM6 A;  1SQB E;  4OGQ D;  4QUR A;  3L75 E;  1Z02 A;  4NBB D;  3VCA A;  2HMO A;  4QDC A;  2E4Q A;  4NBD A;  1UUV A;  1O7G A;  4AIV A;  1O7H A;  4NB9 D;  4H13 D;  2NVG A;  3GL0 A;  4NBD D;  2DE7 A;  1RFS A;  5KLV E;  2D2C D;  1VM9 A;  4U3F E;  2DE7 D;  3AZC A;  2NVE A;  2E74 D;  4NBH A;  2BCC E;  3L72 E;  4PV1 D;  2XR8 A;  4NBH D;  4HM4 A;  4NBE D;  3CXH E;  4HJL A;  3GTS A;  3BCC E;  1NDO A;  3CWB E;  1SQV E;  1WW9 A;  2DE6 A;  2BMO A;  3GZY A;  2XSH A;  4HM1 A;  3GOB A;  2QJY C;  1SQX E;  2YFL A;  2DE6 D;  1BE3 E;  4P1B H;  1G8K B;  4NBA A;  4NBB A;  1PPJ E;  2NUK A;  1L0L E;  2NVF A;  3GB4 A;  3GZX A;  3TGU E;  4H44 D;  4NBA D;  1RIE A;  3DQY A;  4HKV A;  2QJP C;  2QJK C;  1Q90 C;  4NB9 A;  2E4P A;  3GKE A;  2I7F A;  3H1I E;  2FYN C;  1BCC E;  2YFJ A;  1VF5 D;  1KYO E;  1NTK E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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