2HMJA

Crystal structure of the naphthalene 1,2-dioxygenase phe-352-val mutant.
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTVGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase.
pubmed doi rcsb
source organism Pseudomonas sp.
molecule tags Oxidoreductase
molecule keywords Naphthalene 1,2-dioxygenase alpha subunit
total genus 163
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2006-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2hmjA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2hmjA01
2B1XA 2NVGA 3VMIA 3GTEA 4HM8A 2GBWA 3GCFA 4NBHD 1Z01A 2HMMA 5KKZC 3L72E 2Q3WA 3GOBA 1UUWA 4NBFD 4NBDD 4QDCA 5AEUA 1BCCE 1NTKE 3H1KE 4AIVA 1Q90C 2DE6A 1O7HA 2DE5D 2ZYLA 3GKQA 3L74E 1P84E 2YFIA 2NUKA 2NVFA 1KB9E 4QDFA 1FQTA 2YFLA 3VMGA 4NBBA 4HM0A 4HM4A 1NU1E 3EN1A 4NB9A 2BCCE 3AZCA 4NB8A 1L0LE 4NBFA 4H0LD 5CXMA 2JO6A 3L75E 1BE3E 4NBED 2FYUE 4HM3A 3VMID 2DE7A 3VCAA 4HM5A 2IBZE 5HL4A 5AEWA 1Z03A 2ZT9D 1NDOA 4P1BH 4H44D 4OGQD 4QURA 1ULIA 2YIUC 1VF5D 2GBXA 3H1LE 3H1HE 4HM6A 3L70E 2HMNA 4HM1A 4AAYB 1Z02A 4NBAD 1EZVE 1G8KB 1NTZE 3H1IE 4NBEA 1VM9A 1VCKA 4HJLA 3GCEA 1JM1A 4QDFB 2I7FA 4NBGA 2BMQA 2HMJA 2NVEA 1PP9E 3TGUE 2E4PA 5BOKA 1SQQE 4QDDA 2HMOA 3GKEA 3FOUA 2HMLA 2YFJA 3L71E 1WW9A 1SQVE 1EG9A 4QUQA 1NYKA 2BMRA 4H13D 1WQLA 4QUPA 2DE5A 2E75D 1PPJE 4QCKA 2CKFA 4NB8D 5KLIC 2DE7D 4NB9D 4U3FE 1NTME 3EQQA 1ZRTE 4NBCD 2XRXA 4HM7A 2QJPC 1O7GA 2NUMA 1O7NA 3N0QA 2B24A 5KLVE 1O7WA 1ULJA 3GB4A 3H1JE 1KYOE 2XR8A 4PV1D 2NWFA 2A06E 1RFSA 1O7MA 1RIEA 4HKVA 3D89A 4HM2A 2QJYC 1SQBE 3GTSA 4NBBD 3VMHD 1SQPE 3C0DA 4NBCA 1O7PA 2FYNC 2BMOA 3VMGD 4NBGD 3GZXA 3CXHE 1L0NE 4NBAA 2QPZA 2D2CD 2E74D 3BCCE 3VCPA 3DQYA 3L73E 3GL2A 4NBDA 2E76D 2YVJB 1G8JB 2E4QA 3CX5E 2XSHA 2DE6D 3GZYA 4PD4E 4NBHA 3CWBE 3GL0A 2HMKA 2XSOA 1SJGA 4P1CH 3VMHA 1SQXE 2QJKC 2JZAA 1UUVA 4EMJB
chains in the Genus database with same CATH superfamily
2B1XA 2NVGA 3VMIA 3GTEA 4HM8A 2GBWA 3GCFA 4NBHD 1Z01A 2HMMA 5KKZC 3L72E 2Q3WA 3GOBA 1UUWA 4NBFD 4NBDD 4QDCA 5AEUA 1BCCE 1NTKE 3H1KE 4AIVA 1Q90C 2DE6A 1O7HA 2DE5D 2ZYLA 3GKQA 3L74E 1P84E 2YFIA 2NUKA 2NVFA 1KB9E 4QDFA 1FQTA 2YFLA 3VMGA 4NBBA 4HM0A 4HM4A 1NU1E 3EN1A 4NB9A 2BCCE 3AZCA 4NB8A 1L0LE 4NBFA 4H0LD 5CXMA 2JO6A 3L75E 1BE3E 4NBED 2FYUE 4HM3A 3VMID 2DE7A 3VCAA 4HM5A 2IBZE 5HL4A 5AEWA 1Z03A 2ZT9D 1NDOA 4P1BH 4H44D 4OGQD 4QURA 1ULIA 2YIUC 1VF5D 2GBXA 3H1LE 3H1HE 4HM6A 3L70E 2HMNA 4HM1A 4AAYB 1Z02A 4NBAD 1EZVE 1G8KB 1NTZE 3H1IE 4NBEA 1VM9A 1VCKA 4HJLA 3GCEA 1JM1A 4QDFB 2I7FA 4NBGA 2BMQA 2HMJA 2NVEA 1PP9E 3TGUE 2E4PA 5BOKA 1SQQE 4QDDA 2HMOA 3GKEA 3FOUA 2HMLA 2YFJA 3L71E 1WW9A 1SQVE 1EG9A 4QUQA 1NYKA 2BMRA 4H13D 1WQLA 4QUPA 2DE5A 2E75D 1PPJE 4QCKA 2CKFA 4NB8D 5KLIC 2DE7D 4NB9D 4U3FE 1NTME 3EQQA 1ZRTE 4NBCD 2XRXA 4HM7A 2QJPC 1O7GA 2NUMA 1O7NA 3N0QA 2B24A 5KLVE 1O7WA 1ULJA 3GB4A 3H1JE 1KYOE 2XR8A 4PV1D 2NWFA 2A06E 1RFSA 1O7MA 1RIEA 4HKVA 3D89A 4HM2A 2QJYC 1SQBE 3GTSA 4NBBD 3VMHD 1SQPE 3C0DA 4NBCA 1O7PA 2FYNC 2BMOA 3VMGD 4NBGD 3GZXA 3CXHE 1L0NE 4NBAA 2QPZA 2D2CD 2E74D 3BCCE 3VCPA 3DQYA 3L73E 3GL2A 4NBDA 2E76D 2YVJB 1G8JB 2E4QA 3CX5E 2XSHA 2DE6D 3GZYA 4PD4E 4NBHA 3CWBE 3GL0A 2HMKA 2XSOA 1SJGA 4P1CH 3VMHA 1SQXE 2QJKC 2JZAA 1UUVA 4EMJB
chains in the Genus database with same CATH topology
2B1XA 2NVGA 3VMIA 3GTEA 4HM8A 2GBWA 3GCFA 4NBHD 1Z01A 2HMMA 5KKZC 3L72E 2Q3WA 3GOBA 1UUWA 4NBFD 4NBDD 4QDCA 5AEUA 1BCCE 1NTKE 3H1KE 4AIVA 1Q90C 2DE6A 1O7HA 2DE5D 2ZYLA 3GKQA 3L74E 1P84E 2YFIA 2NUKA 2NVFA 1KB9E 4QDFA 1FQTA 2YFLA 3VMGA 4NBBA 4HM0A 4HM4A 1NU1E 3EN1A 4NB9A 2BCCE 3AZCA 4NB8A 1L0LE 4NBFA 4H0LD 5CXMA 2JO6A 3L75E 1BE3E 4NBED 2FYUE 4HM3A 3VMID 2DE7A 3VCAA 4HM5A 2IBZE 5HL4A 5AEWA 1Z03A 2ZT9D 1NDOA 4P1BH 4H44D 4OGQD 4QURA 1ULIA 2YIUC 1VF5D 2GBXA 3H1LE 3H1HE 4HM6A 3L70E 2HMNA 4HM1A 4AAYB 1Z02A 4NBAD 1EZVE 1G8KB 1NTZE 3H1IE 4NBEA 1VM9A 1VCKA 4HJLA 3GCEA 1JM1A 4QDFB 2I7FA 4NBGA 2BMQA 2HMJA 2NVEA 1PP9E 3TGUE 2E4PA 5BOKA 1SQQE 4QDDA 2HMOA 3GKEA 3FOUA 2HMLA 2YFJA 3L71E 1WW9A 1SQVE 1EG9A 4QUQA 1NYKA 2BMRA 4H13D 1WQLA 4QUPA 2DE5A 2E75D 1PPJE 4QCKA 2CKFA 4NB8D 5KLIC 2DE7D 4NB9D 4U3FE 1NTME 3EQQA 1ZRTE 4NBCD 2XRXA 4HM7A 2QJPC 1O7GA 2NUMA 1O7NA 3N0QA 2B24A 5KLVE 1O7WA 1ULJA 3GB4A 3H1JE 1KYOE 2XR8A 4PV1D 2NWFA 2A06E 1RFSA 1O7MA 1RIEA 4HKVA 3D89A 4HM2A 2QJYC 1SQBE 3GTSA 4NBBD 3VMHD 1SQPE 3C0DA 4NBCA 1O7PA 2FYNC 2BMOA 3VMGD 4NBGD 3GZXA 3CXHE 1L0NE 4NBAA 2QPZA 2D2CD 2E74D 3BCCE 3VCPA 3DQYA 3L73E 3GL2A 4NBDA 2E76D 2YVJB 1G8JB 2E4QA 3CX5E 2XSHA 2DE6D 3GZYA 4PD4E 4NBHA 3CWBE 3GL0A 2HMKA 2XSOA 1SJGA 4P1CH 3VMHA 1SQXE 2QJKC 2JZAA 1UUVA 4EMJB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2B1X A;  2NVG A;  3VMI A;  3GTE A;  4HM8 A;  2GBW A;  3GCF A;  4NBH D;  1Z01 A;  2HMM A;  5KKZ C;  3L72 E;  2Q3W A;  3GOB A;  1UUW A;  4NBF D;  4NBD D;  4QDC A;  5AEU A;  1BCC E;  1NTK E;  3H1K E;  4AIV A;  1Q90 C;  2DE6 A;  1O7H A;  2DE5 D;  2ZYL A;  3GKQ A;  3L74 E;  1P84 E;  2YFI A;  2NUK A;  2NVF A;  1KB9 E;  4QDF A;  1FQT A;  2YFL A;  3VMG A;  4NBB A;  4HM0 A;  4HM4 A;  1NU1 E;  3EN1 A;  4NB9 A;  2BCC E;  3AZC A;  4NB8 A;  1L0L E;  4NBF A;  4H0L D;  5CXM A;  2JO6 A;  3L75 E;  1BE3 E;  4NBE D;  2FYU E;  4HM3 A;  3VMI D;  2DE7 A;  3VCA A;  4HM5 A;  2IBZ E;  5HL4 A;  5AEW A;  1Z03 A;  2ZT9 D;  1NDO A;  4P1B H;  4H44 D;  4OGQ D;  4QUR A;  1ULI A;  2YIU C;  1VF5 D;  2GBX A;  3H1L E;  3H1H E;  4HM6 A;  3L70 E;  2HMN A;  4HM1 A;  4AAY B;  1Z02 A;  4NBA D;  1EZV E;  1G8K B;  1NTZ E;  3H1I E;  4NBE A;  1VM9 A;  1VCK A;  4HJL A;  3GCE A;  1JM1 A;  4QDF B;  2I7F A;  4NBG A;  2BMQ A;  2HMJ A;  2NVE A;  1PP9 E;  3TGU E;  2E4P A;  5BOK A;  1SQQ E;  4QDD A;  2HMO A;  3GKE A;  3FOU A;  2HML A;  2YFJ A;  3L71 E;  1WW9 A;  1SQV E;  1EG9 A;  4QUQ A;  1NYK A;  2BMR A;  4H13 D;  1WQL A;  4QUP A;  2DE5 A;  2E75 D;  1PPJ E;  4QCK A;  2CKF A;  4NB8 D;  5KLI C;  2DE7 D;  4NB9 D;  4U3F E;  1NTM E;  3EQQ A;  1ZRT E;  4NBC D;  2XRX A;  4HM7 A;  2QJP C;  1O7G A;  2NUM A;  1O7N A;  3N0Q A;  2B24 A;  5KLV E;  1O7W A;  1ULJ A;  3GB4 A;  3H1J E;  1KYO E;  2XR8 A;  4PV1 D;  2NWF A;  2A06 E;  1RFS A;  1O7M A;  1RIE A;  4HKV A;  3D89 A;  4HM2 A;  2QJY C;  1SQB E;  3GTS A;  4NBB D;  3VMH D;  1SQP E;  3C0D A;  4NBC A;  1O7P A;  2FYN C;  2BMO A;  3VMG D;  4NBG D;  3GZX A;  3CXH E;  1L0N E;  4NBA A;  2QPZ A;  2D2C D;  2E74 D;  3BCC E;  3VCP A;  3DQY A;  3L73 E;  3GL2 A;  4NBD A;  2E76 D;  2YVJ B;  1G8J B;  2E4Q A;  3CX5 E;  2XSH A;  2DE6 D;  3GZY A;  4PD4 E;  4NBH A;  3CWB E;  3GL0 A;  2HMK A;  2XSO A;  1SJG A;  4P1C H;  3VMH A;  1SQX E;  2QJK C;  2JZA A;  1UUV A;  4EMJ B; 
#chains in the Genus database with same CATH topology
 2B1X A;  2NVG A;  3VMI A;  3GTE A;  4HM8 A;  2GBW A;  3GCF A;  4NBH D;  1Z01 A;  2HMM A;  5KKZ C;  3L72 E;  2Q3W A;  3GOB A;  1UUW A;  4NBF D;  4NBD D;  4QDC A;  5AEU A;  1BCC E;  1NTK E;  3H1K E;  4AIV A;  1Q90 C;  2DE6 A;  1O7H A;  2DE5 D;  2ZYL A;  3GKQ A;  3L74 E;  1P84 E;  2YFI A;  2NUK A;  2NVF A;  1KB9 E;  4QDF A;  1FQT A;  2YFL A;  3VMG A;  4NBB A;  4HM0 A;  4HM4 A;  1NU1 E;  3EN1 A;  4NB9 A;  2BCC E;  3AZC A;  4NB8 A;  1L0L E;  4NBF A;  4H0L D;  5CXM A;  2JO6 A;  3L75 E;  1BE3 E;  4NBE D;  2FYU E;  4HM3 A;  3VMI D;  2DE7 A;  3VCA A;  4HM5 A;  2IBZ E;  5HL4 A;  5AEW A;  1Z03 A;  2ZT9 D;  1NDO A;  4P1B H;  4H44 D;  4OGQ D;  4QUR A;  1ULI A;  2YIU C;  1VF5 D;  2GBX A;  3H1L E;  3H1H E;  4HM6 A;  3L70 E;  2HMN A;  4HM1 A;  4AAY B;  1Z02 A;  4NBA D;  1EZV E;  1G8K B;  1NTZ E;  3H1I E;  4NBE A;  1VM9 A;  1VCK A;  4HJL A;  3GCE A;  1JM1 A;  4QDF B;  2I7F A;  4NBG A;  2BMQ A;  2HMJ A;  2NVE A;  1PP9 E;  3TGU E;  2E4P A;  5BOK A;  1SQQ E;  4QDD A;  2HMO A;  3GKE A;  3FOU A;  2HML A;  2YFJ A;  3L71 E;  1WW9 A;  1SQV E;  1EG9 A;  4QUQ A;  1NYK A;  2BMR A;  4H13 D;  1WQL A;  4QUP A;  2DE5 A;  2E75 D;  1PPJ E;  4QCK A;  2CKF A;  4NB8 D;  5KLI C;  2DE7 D;  4NB9 D;  4U3F E;  1NTM E;  3EQQ A;  1ZRT E;  4NBC D;  2XRX A;  4HM7 A;  2QJP C;  1O7G A;  2NUM A;  1O7N A;  3N0Q A;  2B24 A;  5KLV E;  1O7W A;  1ULJ A;  3GB4 A;  3H1J E;  1KYO E;  2XR8 A;  4PV1 D;  2NWF A;  2A06 E;  1RFS A;  1O7M A;  1RIE A;  4HKV A;  3D89 A;  4HM2 A;  2QJY C;  1SQB E;  3GTS A;  4NBB D;  3VMH D;  1SQP E;  3C0D A;  4NBC A;  1O7P A;  2FYN C;  2BMO A;  3VMG D;  4NBG D;  3GZX A;  3CXH E;  1L0N E;  4NBA A;  2QPZ A;  2D2C D;  2E74 D;  3BCC E;  3VCP A;  3DQY A;  3L73 E;  3GL2 A;  4NBD A;  2E76 D;  2YVJ B;  1G8J B;  2E4Q A;  3CX5 E;  2XSH A;  2DE6 D;  3GZY A;  4PD4 E;  4NBH A;  3CWB E;  3GL0 A;  2HMK A;  2XSO A;  1SJG A;  4P1C H;  3VMH A;  1SQX E;  2QJK C;  2JZA A;  1UUV A;  4EMJ B; 
#chains in the Genus database with same CATH homology
 2B1X A;  2NVG A;  3VMI A;  3GTE A;  4HM8 A;  2GBW A;  3GCF A;  4NBH D;  1Z01 A;  2HMM A;  5KKZ C;  3L72 E;  2Q3W A;  3GOB A;  1UUW A;  4NBF D;  4NBD D;  4QDC A;  5AEU A;  1BCC E;  1NTK E;  3H1K E;  4AIV A;  1Q90 C;  2DE6 A;  1O7H A;  2DE5 D;  2ZYL A;  3GKQ A;  3L74 E;  1P84 E;  2YFI A;  2NUK A;  2NVF A;  1KB9 E;  4QDF A;  1FQT A;  2YFL A;  3VMG A;  4NBB A;  4HM0 A;  4HM4 A;  1NU1 E;  3EN1 A;  4NB9 A;  2BCC E;  3AZC A;  4NB8 A;  1L0L E;  4NBF A;  4H0L D;  5CXM A;  2JO6 A;  3L75 E;  1BE3 E;  4NBE D;  2FYU E;  4HM3 A;  3VMI D;  2DE7 A;  3VCA A;  4HM5 A;  2IBZ E;  5HL4 A;  5AEW A;  1Z03 A;  2ZT9 D;  1NDO A;  4P1B H;  4H44 D;  4OGQ D;  4QUR A;  1ULI A;  2YIU C;  1VF5 D;  2GBX A;  3H1L E;  3H1H E;  4HM6 A;  3L70 E;  2HMN A;  4HM1 A;  4AAY B;  1Z02 A;  4NBA D;  1EZV E;  1G8K B;  1NTZ E;  3H1I E;  4NBE A;  1VM9 A;  1VCK A;  4HJL A;  3GCE A;  1JM1 A;  4QDF B;  2I7F A;  4NBG A;  2BMQ A;  2HMJ A;  2NVE A;  1PP9 E;  3TGU E;  2E4P A;  5BOK A;  1SQQ E;  4QDD A;  2HMO A;  3GKE A;  3FOU A;  2HML A;  2YFJ A;  3L71 E;  1WW9 A;  1SQV E;  1EG9 A;  4QUQ A;  1NYK A;  2BMR A;  4H13 D;  1WQL A;  4QUP A;  2DE5 A;  2E75 D;  1PPJ E;  4QCK A;  2CKF A;  4NB8 D;  5KLI C;  2DE7 D;  4NB9 D;  4U3F E;  1NTM E;  3EQQ A;  1ZRT E;  4NBC D;  2XRX A;  4HM7 A;  2QJP C;  1O7G A;  2NUM A;  1O7N A;  3N0Q A;  2B24 A;  5KLV E;  1O7W A;  1ULJ A;  3GB4 A;  3H1J E;  1KYO E;  2XR8 A;  4PV1 D;  2NWF A;  2A06 E;  1RFS A;  1O7M A;  1RIE A;  4HKV A;  3D89 A;  4HM2 A;  2QJY C;  1SQB E;  3GTS A;  4NBB D;  3VMH D;  1SQP E;  3C0D A;  4NBC A;  1O7P A;  2FYN C;  2BMO A;  3VMG D;  4NBG D;  3GZX A;  3CXH E;  1L0N E;  4NBA A;  2QPZ A;  2D2C D;  2E74 D;  3BCC E;  3VCP A;  3DQY A;  3L73 E;  3GL2 A;  4NBD A;  2E76 D;  2YVJ B;  1G8J B;  2E4Q A;  3CX5 E;  2XSH A;  2DE6 D;  3GZY A;  4PD4 E;  4NBH A;  3CWB E;  3GL0 A;  2HMK A;  2XSO A;  1SJG A;  4P1C H;  3VMH A;  1SQX E;  2QJK C;  2JZA A;  1UUV A;  4EMJ B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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