4NBCD

Oxygenase with phe275 replaced by trp and ferredoxin complex of carbazole 1,9a-dioxygenase (form1)
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
molecule keywords Terminal oxygenase component of carbazole
total genus 19
structure length 104
sequence length 104
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbcD00
2FYUE 1SQBE 3GZYA 1Q90C 2HMKA 3D89A 2BMRA 3FOUA 4HJLA 4HM7A 2QJPC 2BMQA 1NYKA 3GCEA 3CX5E 3GTSA 4NB8D 1UUWA 3N0QA 5KLVE 4U3FE 1NTZE 3VMHD 2NUKA 2YVJB 2XRXA 1VF5D 2QJYC 4NBGD 1KYOE 1G8KB 4HM4A 5KKZC 2YIUC 3GTEA 2YFIA 3GKEA 2E75D 1VCKA 1O7NA 3GB4A 1FQTA 2DE6D 2QPZA 3VCPA 2HMOA 4NBHD 2CKFA 1RIEA 2A06E 4P1CH 1NTKE 5BOKA 3DQYA 2NUMA 2NVEA 4NBCD 3EQQA 1EZVE 2BMOA 3L70E 2IBZE 1SJGA 2FYNC 2E4QA 4H44D 1WQLA 4QDFA 1O7GA 2YFLA 4HM0A 1ULIA 1UUVA 1SQXE 3L75E 2HMJA 3VMID 3H1KE 4QDDA 2QJKC 1O7PA 1PP9E 4NBBD 2Q3WA 4QUQA 1O7HA 3GZXA 2HMMA 3GOBA 1ULJA 4NBFD 4HM1A 4HM8A 2ZYLA 3H1HE 1NTME 2NVFA 3AZCA 2D2CD 1BCCE 2E76D 4NB9D 5KLIC 1JM1A 2GBXA 3H1LE 3EN1A 5CXMA 1P84E 2XSOA 2DE5D 3H1JE 1SQQE 2JZAA 3L72E 4NBAD 4QURA 2HMLA 2YFJA 2ZT9D 1PPJE 3VMGD 4NBDD 3CXHE 4HM2A 3CWBE 4AIVA 4H0LD 3TGUE 1BE3E 1NU1E 2DE7D 4QDFB 2I7FA 4AAYB 2XR8A 3H1IE 4QUPA 1L0NE 1ZRTE 1L0LE 1NDOA 4EMJB 1SQVE 2JO6A 1O7MA 4QDCA 2BCCE 3C0DA 2GBWA 3VCAA 3L73E 4OGQD 5AEWA 1KB9E 3L71E 3L74E 1G8JB 4QCKA 4H13D 4HM6A 2NWFA 5HL4A 2B1XA 1SQPE 4HM5A 2NVGA 4PV1D 3GL0A 4HKVA 4NBED 2E74D 2E4PA 5AEUA 1O7WA 3BCCE 3GL2A 1EG9A 2XSHA 4HM3A 4P1BH 2B24A 1VM9A 1RFSA 2HMNA 4PD4E
chains in the Genus database with same CATH superfamily
2FYUE 1SQBE 3GZYA 1Q90C 2HMKA 3D89A 2BMRA 3FOUA 4HJLA 4HM7A 2QJPC 2BMQA 1NYKA 3GCEA 3CX5E 3GTSA 4NB8D 1UUWA 3N0QA 5KLVE 4U3FE 1NTZE 3VMHD 2NUKA 2YVJB 2XRXA 1VF5D 2QJYC 4NBGD 1KYOE 1G8KB 4HM4A 5KKZC 2YIUC 3GTEA 2YFIA 3GKEA 2E75D 1VCKA 1O7NA 3GB4A 1FQTA 2DE6D 2QPZA 3VCPA 2HMOA 4NBHD 2CKFA 1RIEA 2A06E 4P1CH 1NTKE 5BOKA 3DQYA 2NUMA 2NVEA 4NBCD 3EQQA 1EZVE 2BMOA 3L70E 2IBZE 1SJGA 2FYNC 2E4QA 4H44D 1WQLA 4QDFA 1O7GA 2YFLA 4HM0A 1ULIA 1UUVA 1SQXE 3L75E 2HMJA 3VMID 3H1KE 4QDDA 2QJKC 1O7PA 1PP9E 4NBBD 2Q3WA 4QUQA 1O7HA 3GZXA 2HMMA 3GOBA 1ULJA 4NBFD 4HM1A 4HM8A 2ZYLA 3H1HE 1NTME 2NVFA 3AZCA 2D2CD 1BCCE 2E76D 4NB9D 5KLIC 1JM1A 2GBXA 3H1LE 3EN1A 5CXMA 1P84E 2XSOA 2DE5D 3H1JE 1SQQE 2JZAA 3L72E 4NBAD 4QURA 2HMLA 2YFJA 2ZT9D 1PPJE 3VMGD 4NBDD 3CXHE 4HM2A 3CWBE 4AIVA 4H0LD 3TGUE 1BE3E 1NU1E 2DE7D 4QDFB 2I7FA 4AAYB 2XR8A 3H1IE 4QUPA 1L0NE 1ZRTE 1L0LE 1NDOA 4EMJB 1SQVE 2JO6A 1O7MA 4QDCA 2BCCE 3C0DA 2GBWA 3VCAA 3L73E 4OGQD 5AEWA 1KB9E 3L71E 3L74E 1G8JB 4QCKA 4H13D 4HM6A 2NWFA 5HL4A 2B1XA 1SQPE 4HM5A 2NVGA 4PV1D 3GL0A 4HKVA 4NBED 2E74D 2E4PA 5AEUA 1O7WA 3BCCE 3GL2A 1EG9A 2XSHA 4HM3A 4P1BH 2B24A 1VM9A 1RFSA 2HMNA 4PD4E
chains in the Genus database with same CATH topology
2FYUE 1SQBE 3GZYA 1Q90C 2HMKA 3D89A 2BMRA 3FOUA 4HJLA 4HM7A 2QJPC 2BMQA 1NYKA 3GCEA 3CX5E 3GTSA 4NB8D 1UUWA 3N0QA 5KLVE 4U3FE 1NTZE 3VMHD 2NUKA 2YVJB 2XRXA 1VF5D 2QJYC 4NBGD 1KYOE 1G8KB 4HM4A 5KKZC 2YIUC 3GTEA 2YFIA 3GKEA 2E75D 1VCKA 1O7NA 3GB4A 1FQTA 2DE6D 2QPZA 3VCPA 2HMOA 4NBHD 2CKFA 1RIEA 2A06E 4P1CH 1NTKE 5BOKA 3DQYA 2NUMA 2NVEA 4NBCD 3EQQA 1EZVE 2BMOA 3L70E 2IBZE 1SJGA 2FYNC 2E4QA 4H44D 1WQLA 4QDFA 1O7GA 2YFLA 4HM0A 1ULIA 1UUVA 1SQXE 3L75E 2HMJA 3VMID 3H1KE 4QDDA 2QJKC 1O7PA 1PP9E 4NBBD 2Q3WA 4QUQA 1O7HA 3GZXA 2HMMA 3GOBA 1ULJA 4NBFD 4HM1A 4HM8A 2ZYLA 3H1HE 1NTME 2NVFA 3AZCA 2D2CD 1BCCE 2E76D 4NB9D 5KLIC 1JM1A 2GBXA 3H1LE 3EN1A 5CXMA 1P84E 2XSOA 2DE5D 3H1JE 1SQQE 2JZAA 3L72E 4NBAD 4QURA 2HMLA 2YFJA 2ZT9D 1PPJE 3VMGD 4NBDD 3CXHE 4HM2A 3CWBE 4AIVA 4H0LD 3TGUE 1BE3E 1NU1E 2DE7D 4QDFB 2I7FA 4AAYB 2XR8A 3H1IE 4QUPA 1L0NE 1ZRTE 1L0LE 1NDOA 4EMJB 1SQVE 2JO6A 1O7MA 4QDCA 2BCCE 3C0DA 2GBWA 3VCAA 3L73E 4OGQD 5AEWA 1KB9E 3L71E 3L74E 1G8JB 4QCKA 4H13D 4HM6A 2NWFA 5HL4A 2B1XA 1SQPE 4HM5A 2NVGA 4PV1D 3GL0A 4HKVA 4NBED 2E74D 2E4PA 5AEUA 1O7WA 3BCCE 3GL2A 1EG9A 2XSHA 4HM3A 4P1BH 2B24A 1VM9A 1RFSA 2HMNA 4PD4E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FYU E;  1SQB E;  3GZY A;  1Q90 C;  2HMK A;  3D89 A;  2BMR A;  3FOU A;  4HJL A;  4HM7 A;  2QJP C;  2BMQ A;  1NYK A;  3GCE A;  3CX5 E;  3GTS A;  4NB8 D;  1UUW A;  3N0Q A;  5KLV E;  4U3F E;  1NTZ E;  3VMH D;  2NUK A;  2YVJ B;  2XRX A;  1VF5 D;  2QJY C;  4NBG D;  1KYO E;  1G8K B;  4HM4 A;  5KKZ C;  2YIU C;  3GTE A;  2YFI A;  3GKE A;  2E75 D;  1VCK A;  1O7N A;  3GB4 A;  1FQT A;  2DE6 D;  2QPZ A;  3VCP A;  2HMO A;  4NBH D;  2CKF A;  1RIE A;  2A06 E;  4P1C H;  1NTK E;  5BOK A;  3DQY A;  2NUM A;  2NVE A;  4NBC D;  3EQQ A;  1EZV E;  2BMO A;  3L70 E;  2IBZ E;  1SJG A;  2FYN C;  2E4Q A;  4H44 D;  1WQL A;  4QDF A;  1O7G A;  2YFL A;  4HM0 A;  1ULI A;  1UUV A;  1SQX E;  3L75 E;  2HMJ A;  3VMI D;  3H1K E;  4QDD A;  2QJK C;  1O7P A;  1PP9 E;  4NBB D;  2Q3W A;  4QUQ A;  1O7H A;  3GZX A;  2HMM A;  3GOB A;  1ULJ A;  4NBF D;  4HM1 A;  4HM8 A;  2ZYL A;  3H1H E;  1NTM E;  2NVF A;  3AZC A;  2D2C D;  1BCC E;  2E76 D;  4NB9 D;  5KLI C;  1JM1 A;  2GBX A;  3H1L E;  3EN1 A;  5CXM A;  1P84 E;  2XSO A;  2DE5 D;  3H1J E;  1SQQ E;  2JZA A;  3L72 E;  4NBA D;  4QUR A;  2HML A;  2YFJ A;  2ZT9 D;  1PPJ E;  3VMG D;  4NBD D;  3CXH E;  4HM2 A;  3CWB E;  4AIV A;  4H0L D;  3TGU E;  1BE3 E;  1NU1 E;  2DE7 D;  4QDF B;  2I7F A;  4AAY B;  2XR8 A;  3H1I E;  4QUP A;  1L0N E;  1ZRT E;  1L0L E;  1NDO A;  4EMJ B;  1SQV E;  2JO6 A;  1O7M A;  4QDC A;  2BCC E;  3C0D A;  2GBW A;  3VCA A;  3L73 E;  4OGQ D;  5AEW A;  1KB9 E;  3L71 E;  3L74 E;  1G8J B;  4QCK A;  4H13 D;  4HM6 A;  2NWF A;  5HL4 A;  2B1X A;  1SQP E;  4HM5 A;  2NVG A;  4PV1 D;  3GL0 A;  4HKV A;  4NBE D;  2E74 D;  2E4P A;  5AEU A;  1O7W A;  3BCC E;  3GL2 A;  1EG9 A;  2XSH A;  4HM3 A;  4P1B H;  2B24 A;  1VM9 A;  1RFS A;  2HMN A;  4PD4 E; 
#chains in the Genus database with same CATH topology
 2FYU E;  1SQB E;  3GZY A;  1Q90 C;  2HMK A;  3D89 A;  2BMR A;  3FOU A;  4HJL A;  4HM7 A;  2QJP C;  2BMQ A;  1NYK A;  3GCE A;  3CX5 E;  3GTS A;  4NB8 D;  1UUW A;  3N0Q A;  5KLV E;  4U3F E;  1NTZ E;  3VMH D;  2NUK A;  2YVJ B;  2XRX A;  1VF5 D;  2QJY C;  4NBG D;  1KYO E;  1G8K B;  4HM4 A;  5KKZ C;  2YIU C;  3GTE A;  2YFI A;  3GKE A;  2E75 D;  1VCK A;  1O7N A;  3GB4 A;  1FQT A;  2DE6 D;  2QPZ A;  3VCP A;  2HMO A;  4NBH D;  2CKF A;  1RIE A;  2A06 E;  4P1C H;  1NTK E;  5BOK A;  3DQY A;  2NUM A;  2NVE A;  4NBC D;  3EQQ A;  1EZV E;  2BMO A;  3L70 E;  2IBZ E;  1SJG A;  2FYN C;  2E4Q A;  4H44 D;  1WQL A;  4QDF A;  1O7G A;  2YFL A;  4HM0 A;  1ULI A;  1UUV A;  1SQX E;  3L75 E;  2HMJ A;  3VMI D;  3H1K E;  4QDD A;  2QJK C;  1O7P A;  1PP9 E;  4NBB D;  2Q3W A;  4QUQ A;  1O7H A;  3GZX A;  2HMM A;  3GOB A;  1ULJ A;  4NBF D;  4HM1 A;  4HM8 A;  2ZYL A;  3H1H E;  1NTM E;  2NVF A;  3AZC A;  2D2C D;  1BCC E;  2E76 D;  4NB9 D;  5KLI C;  1JM1 A;  2GBX A;  3H1L E;  3EN1 A;  5CXM A;  1P84 E;  2XSO A;  2DE5 D;  3H1J E;  1SQQ E;  2JZA A;  3L72 E;  4NBA D;  4QUR A;  2HML A;  2YFJ A;  2ZT9 D;  1PPJ E;  3VMG D;  4NBD D;  3CXH E;  4HM2 A;  3CWB E;  4AIV A;  4H0L D;  3TGU E;  1BE3 E;  1NU1 E;  2DE7 D;  4QDF B;  2I7F A;  4AAY B;  2XR8 A;  3H1I E;  4QUP A;  1L0N E;  1ZRT E;  1L0L E;  1NDO A;  4EMJ B;  1SQV E;  2JO6 A;  1O7M A;  4QDC A;  2BCC E;  3C0D A;  2GBW A;  3VCA A;  3L73 E;  4OGQ D;  5AEW A;  1KB9 E;  3L71 E;  3L74 E;  1G8J B;  4QCK A;  4H13 D;  4HM6 A;  2NWF A;  5HL4 A;  2B1X A;  1SQP E;  4HM5 A;  2NVG A;  4PV1 D;  3GL0 A;  4HKV A;  4NBE D;  2E74 D;  2E4P A;  5AEU A;  1O7W A;  3BCC E;  3GL2 A;  1EG9 A;  2XSH A;  4HM3 A;  4P1B H;  2B24 A;  1VM9 A;  1RFS A;  2HMN A;  4PD4 E; 
#chains in the Genus database with same CATH homology
 2FYU E;  1SQB E;  3GZY A;  1Q90 C;  2HMK A;  3D89 A;  2BMR A;  3FOU A;  4HJL A;  4HM7 A;  2QJP C;  2BMQ A;  1NYK A;  3GCE A;  3CX5 E;  3GTS A;  4NB8 D;  1UUW A;  3N0Q A;  5KLV E;  4U3F E;  1NTZ E;  3VMH D;  2NUK A;  2YVJ B;  2XRX A;  1VF5 D;  2QJY C;  4NBG D;  1KYO E;  1G8K B;  4HM4 A;  5KKZ C;  2YIU C;  3GTE A;  2YFI A;  3GKE A;  2E75 D;  1VCK A;  1O7N A;  3GB4 A;  1FQT A;  2DE6 D;  2QPZ A;  3VCP A;  2HMO A;  4NBH D;  2CKF A;  1RIE A;  2A06 E;  4P1C H;  1NTK E;  5BOK A;  3DQY A;  2NUM A;  2NVE A;  4NBC D;  3EQQ A;  1EZV E;  2BMO A;  3L70 E;  2IBZ E;  1SJG A;  2FYN C;  2E4Q A;  4H44 D;  1WQL A;  4QDF A;  1O7G A;  2YFL A;  4HM0 A;  1ULI A;  1UUV A;  1SQX E;  3L75 E;  2HMJ A;  3VMI D;  3H1K E;  4QDD A;  2QJK C;  1O7P A;  1PP9 E;  4NBB D;  2Q3W A;  4QUQ A;  1O7H A;  3GZX A;  2HMM A;  3GOB A;  1ULJ A;  4NBF D;  4HM1 A;  4HM8 A;  2ZYL A;  3H1H E;  1NTM E;  2NVF A;  3AZC A;  2D2C D;  1BCC E;  2E76 D;  4NB9 D;  5KLI C;  1JM1 A;  2GBX A;  3H1L E;  3EN1 A;  5CXM A;  1P84 E;  2XSO A;  2DE5 D;  3H1J E;  1SQQ E;  2JZA A;  3L72 E;  4NBA D;  4QUR A;  2HML A;  2YFJ A;  2ZT9 D;  1PPJ E;  3VMG D;  4NBD D;  3CXH E;  4HM2 A;  3CWB E;  4AIV A;  4H0L D;  3TGU E;  1BE3 E;  1NU1 E;  2DE7 D;  4QDF B;  2I7F A;  4AAY B;  2XR8 A;  3H1I E;  4QUP A;  1L0N E;  1ZRT E;  1L0L E;  1NDO A;  4EMJ B;  1SQV E;  2JO6 A;  1O7M A;  4QDC A;  2BCC E;  3C0D A;  2GBW A;  3VCA A;  3L73 E;  4OGQ D;  5AEW A;  1KB9 E;  3L71 E;  3L74 E;  1G8J B;  4QCK A;  4H13 D;  4HM6 A;  2NWF A;  5HL4 A;  2B1X A;  1SQP E;  4HM5 A;  2NVG A;  4PV1 D;  3GL0 A;  4HKV A;  4NBE D;  2E74 D;  2E4P A;  5AEU A;  1O7W A;  3BCC E;  3GL2 A;  1EG9 A;  2XSH A;  4HM3 A;  4P1B H;  2B24 A;  1VM9 A;  1RFS A;  2HMN A;  4PD4 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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