3GZYA

Crystal structure of the biphenyl dioxygenase from comamonas testosteroni sp. strain b-356
Total Genus 156
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
440
structure length
440
Chain Sequence
NWTPDAIRALVDQDNGKLDARIYADQDLYQLELERVFGRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKVFLNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWDPEAPDLKTYLSDAMPYMDVMLDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVLAGLPPEMDLTQIQLSKNGNQFRSAWGGHGAGWFINDSSILLSVVGPKITQYWTQGPAAEKAARRVPQLPILDMFGQHMTVFPTCSFLPGINTIRTWHPRGPNEVEVWAFVLVDADAPEDIKEEFRLQNIRTFNAGGVFEQDDGENWVEIQRVMRGHKAKSTSLCAKMGLNVPNKNNPAYPGKTAYVYAEEAARGMYHHWSRMMSEPSWDTLKP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Biphenyl dioxygenase subunit alpha
publication title Structural Characterization of Pandoraea pnomenusa B-356 Biphenyl Dioxygenase Reveals Features of Potent Polychlorinated Biphenyl-Degrading Enzymes
pubmed doi rcsb
source organism Comamonas testosteroni
total genus 156
structure length 440
sequence length 440
ec nomenclature ec 1.14.12.18: Biphenyl 2,3-dioxygenase.
pdb deposition date 2009-04-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3gzyA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 3gzyA01
4QCKA 1L0LE 2QJYC 1KB9E 3CWBE 3DQYA 4NBDD 3GL0A 5AEWA 3N0QA 2QJPC 1O7HA 2GBXA 2YIUC 1SQQE 3TGUE 1SQXE 4QUQA 2XSHA 4HJLA 1SJGA 2BMRA 3L75E 2HMJA 3VCAA 4NBFA 1VM9A 5AEUA 4NBBA 2DE6A 4QDFA 2FYUE 1UUWA 1BE3E 1O7NA 3AZCA 2HMKA 2DE7A 4NB8D 2HMNA 4OGQD 3GTSA 1Z03A 2QPZA 4NBEA 3VMID 1PP9E 3H1KE 1KYOE 4H0LD 2NVFA 1BCCE 1O7PA 2E4QA 1O7WA 5HL4A 3GCEA 3EQQA 1RFSA 2DE6D 4H44D 2QJKC 4HM2A 1O7MA 3GKQA 3VMGA 4PD4E 2E76D 4NBGA 1SQPE 2YFLA 1P84E 4NBCD 3L71E 1SQVE 3C0DA 3GCFA 2JZAA 2CKFA 4EMJB 2JO6A 4QDDA 4NBAD 2BMQA 4NBED 1G8KB 3VMHD 1VCKA 2BMOA 4HM7A 3CX5E 3H1LE 4NBHA 3VMGD 4HM0A 4NBGD 2E4PA 4NB9A 5KLVE 3D89A 4HM1A 4HM5A 4AAYB 1WW9A 3GZXA 3H1IE 3CXHE 3GB4A 1NDOA 3GL2A 1RIEA 2ZT9D 1EZVE 2GBWA 2B24A 1G8JB 2YFJA 2E74D 2YFIA 1WQLA 1NYKA 3H1HE 3L74E 2FYNC 2D2CD 4NBFD 4NBBD 2DE5A 1VF5D 3L72E 4P1BH 3FOUA 2IBZE 2DE7D 2HMOA 4QURA 1PPJE 4NBDA 2HMMA 1NU1E 3L70E 1JM1A 3BCCE 4H13D 4QUPA 1ULIA 2XR8A 2I7FA 4HM3A 2NVEA 5BOKA 2NVGA 2YVJB 2XSOA 4HM6A 2Q3WA 3L73E 1Z02A 1Q90C 2NWFA 4NB8A 1L0NE 2A06E 3GZYA 4HM4A 3H1JE 1SQBE 1ZRTE 2NUKA 3GTEA 3GOBA 5KLIC 3VCPA 3VMIA 2NUMA 4HM8A 2E75D 5CXMA 5KKZC 1NTKE 4QDFB 1NTZE 1ULJA 1UUVA 2HMLA 4QDCA 4NBHD 4NB9D 1O7GA 4PV1D 4NBCA 1Z01A 1FQTA 2ZYLA 2B1XA 4HKVA 2XRXA 1NTME 4NBAA 4AIVA 2BCCE 2DE5D 3GKEA 3VMHA 4P1CH 1EG9A 3EN1A 4U3FE
chains in the Genus database with same CATH superfamily
4QCKA 1L0LE 2QJYC 1KB9E 3CWBE 3DQYA 4NBDD 3GL0A 5AEWA 3N0QA 2QJPC 1O7HA 2GBXA 2YIUC 1SQQE 3TGUE 1SQXE 4QUQA 2XSHA 4HJLA 1SJGA 2BMRA 3L75E 2HMJA 3VCAA 4NBFA 1VM9A 5AEUA 4NBBA 2DE6A 4QDFA 2FYUE 1UUWA 1BE3E 1O7NA 3AZCA 2HMKA 2DE7A 4NB8D 2HMNA 4OGQD 3GTSA 1Z03A 2QPZA 4NBEA 3VMID 1PP9E 3H1KE 1KYOE 4H0LD 2NVFA 1BCCE 1O7PA 2E4QA 1O7WA 5HL4A 3GCEA 3EQQA 1RFSA 2DE6D 4H44D 2QJKC 4HM2A 1O7MA 3GKQA 3VMGA 4PD4E 2E76D 4NBGA 1SQPE 2YFLA 1P84E 4NBCD 3L71E 1SQVE 3C0DA 3GCFA 2JZAA 2CKFA 4EMJB 2JO6A 4QDDA 4NBAD 2BMQA 4NBED 1G8KB 3VMHD 1VCKA 2BMOA 4HM7A 3CX5E 3H1LE 4NBHA 3VMGD 4HM0A 4NBGD 2E4PA 4NB9A 5KLVE 3D89A 4HM1A 4HM5A 4AAYB 1WW9A 3GZXA 3H1IE 3CXHE 3GB4A 1NDOA 3GL2A 1RIEA 2ZT9D 1EZVE 2GBWA 2B24A 1G8JB 2YFJA 2E74D 2YFIA 1WQLA 1NYKA 3H1HE 3L74E 2FYNC 2D2CD 4NBFD 4NBBD 2DE5A 1VF5D 3L72E 4P1BH 3FOUA 2IBZE 2DE7D 2HMOA 4QURA 1PPJE 4NBDA 2HMMA 1NU1E 3L70E 1JM1A 3BCCE 4H13D 4QUPA 1ULIA 2XR8A 2I7FA 4HM3A 2NVEA 5BOKA 2NVGA 2YVJB 2XSOA 4HM6A 2Q3WA 3L73E 1Z02A 1Q90C 2NWFA 4NB8A 1L0NE 2A06E 3GZYA 4HM4A 3H1JE 1SQBE 1ZRTE 2NUKA 3GTEA 3GOBA 5KLIC 3VCPA 3VMIA 2NUMA 4HM8A 2E75D 5CXMA 5KKZC 1NTKE 4QDFB 1NTZE 1ULJA 1UUVA 2HMLA 4QDCA 4NBHD 4NB9D 1O7GA 4PV1D 4NBCA 1Z01A 1FQTA 2ZYLA 2B1XA 4HKVA 2XRXA 1NTME 4NBAA 4AIVA 2BCCE 2DE5D 3GKEA 3VMHA 4P1CH 1EG9A 3EN1A 4U3FE
chains in the Genus database with same CATH topology
4QCKA 1L0LE 2QJYC 1KB9E 3CWBE 3DQYA 4NBDD 3GL0A 5AEWA 3N0QA 2QJPC 1O7HA 2GBXA 2YIUC 1SQQE 3TGUE 1SQXE 4QUQA 2XSHA 4HJLA 1SJGA 2BMRA 3L75E 2HMJA 3VCAA 4NBFA 1VM9A 5AEUA 4NBBA 2DE6A 4QDFA 2FYUE 1UUWA 1BE3E 1O7NA 3AZCA 2HMKA 2DE7A 4NB8D 2HMNA 4OGQD 3GTSA 1Z03A 2QPZA 4NBEA 3VMID 1PP9E 3H1KE 1KYOE 4H0LD 2NVFA 1BCCE 1O7PA 2E4QA 1O7WA 5HL4A 3GCEA 3EQQA 1RFSA 2DE6D 4H44D 2QJKC 4HM2A 1O7MA 3GKQA 3VMGA 4PD4E 2E76D 4NBGA 1SQPE 2YFLA 1P84E 4NBCD 3L71E 1SQVE 3C0DA 3GCFA 2JZAA 2CKFA 4EMJB 2JO6A 4QDDA 4NBAD 2BMQA 4NBED 1G8KB 3VMHD 1VCKA 2BMOA 4HM7A 3CX5E 3H1LE 4NBHA 3VMGD 4HM0A 4NBGD 2E4PA 4NB9A 5KLVE 3D89A 4HM1A 4HM5A 4AAYB 1WW9A 3GZXA 3H1IE 3CXHE 3GB4A 1NDOA 3GL2A 1RIEA 2ZT9D 1EZVE 2GBWA 2B24A 1G8JB 2YFJA 2E74D 2YFIA 1WQLA 1NYKA 3H1HE 3L74E 2FYNC 2D2CD 4NBFD 4NBBD 2DE5A 1VF5D 3L72E 4P1BH 3FOUA 2IBZE 2DE7D 2HMOA 4QURA 1PPJE 4NBDA 2HMMA 1NU1E 3L70E 1JM1A 3BCCE 4H13D 4QUPA 1ULIA 2XR8A 2I7FA 4HM3A 2NVEA 5BOKA 2NVGA 2YVJB 2XSOA 4HM6A 2Q3WA 3L73E 1Z02A 1Q90C 2NWFA 4NB8A 1L0NE 2A06E 3GZYA 4HM4A 3H1JE 1SQBE 1ZRTE 2NUKA 3GTEA 3GOBA 5KLIC 3VCPA 3VMIA 2NUMA 4HM8A 2E75D 5CXMA 5KKZC 1NTKE 4QDFB 1NTZE 1ULJA 1UUVA 2HMLA 4QDCA 4NBHD 4NB9D 1O7GA 4PV1D 4NBCA 1Z01A 1FQTA 2ZYLA 2B1XA 4HKVA 2XRXA 1NTME 4NBAA 4AIVA 2BCCE 2DE5D 3GKEA 3VMHA 4P1CH 1EG9A 3EN1A 4U3FE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QCK A;  1L0L E;  2QJY C;  1KB9 E;  3CWB E;  3DQY A;  4NBD D;  3GL0 A;  5AEW A;  3N0Q A;  2QJP C;  1O7H A;  2GBX A;  2YIU C;  1SQQ E;  3TGU E;  1SQX E;  4QUQ A;  2XSH A;  4HJL A;  1SJG A;  2BMR A;  3L75 E;  2HMJ A;  3VCA A;  4NBF A;  1VM9 A;  5AEU A;  4NBB A;  2DE6 A;  4QDF A;  2FYU E;  1UUW A;  1BE3 E;  1O7N A;  3AZC A;  2HMK A;  2DE7 A;  4NB8 D;  2HMN A;  4OGQ D;  3GTS A;  1Z03 A;  2QPZ A;  4NBE A;  3VMI D;  1PP9 E;  3H1K E;  1KYO E;  4H0L D;  2NVF A;  1BCC E;  1O7P A;  2E4Q A;  1O7W A;  5HL4 A;  3GCE A;  3EQQ A;  1RFS A;  2DE6 D;  4H44 D;  2QJK C;  4HM2 A;  1O7M A;  3GKQ A;  3VMG A;  4PD4 E;  2E76 D;  4NBG A;  1SQP E;  2YFL A;  1P84 E;  4NBC D;  3L71 E;  1SQV E;  3C0D A;  3GCF A;  2JZA A;  2CKF A;  4EMJ B;  2JO6 A;  4QDD A;  4NBA D;  2BMQ A;  4NBE D;  1G8K B;  3VMH D;  1VCK A;  2BMO A;  4HM7 A;  3CX5 E;  3H1L E;  4NBH A;  3VMG D;  4HM0 A;  4NBG D;  2E4P A;  4NB9 A;  5KLV E;  3D89 A;  4HM1 A;  4HM5 A;  4AAY B;  1WW9 A;  3GZX A;  3H1I E;  3CXH E;  3GB4 A;  1NDO A;  3GL2 A;  1RIE A;  2ZT9 D;  1EZV E;  2GBW A;  2B24 A;  1G8J B;  2YFJ A;  2E74 D;  2YFI A;  1WQL A;  1NYK A;  3H1H E;  3L74 E;  2FYN C;  2D2C D;  4NBF D;  4NBB D;  2DE5 A;  1VF5 D;  3L72 E;  4P1B H;  3FOU A;  2IBZ E;  2DE7 D;  2HMO A;  4QUR A;  1PPJ E;  4NBD A;  2HMM A;  1NU1 E;  3L70 E;  1JM1 A;  3BCC E;  4H13 D;  4QUP A;  1ULI A;  2XR8 A;  2I7F A;  4HM3 A;  2NVE A;  5BOK A;  2NVG A;  2YVJ B;  2XSO A;  4HM6 A;  2Q3W A;  3L73 E;  1Z02 A;  1Q90 C;  2NWF A;  4NB8 A;  1L0N E;  2A06 E;  3GZY A;  4HM4 A;  3H1J E;  1SQB E;  1ZRT E;  2NUK A;  3GTE A;  3GOB A;  5KLI C;  3VCP A;  3VMI A;  2NUM A;  4HM8 A;  2E75 D;  5CXM A;  5KKZ C;  1NTK E;  4QDF B;  1NTZ E;  1ULJ A;  1UUV A;  2HML A;  4QDC A;  4NBH D;  4NB9 D;  1O7G A;  4PV1 D;  4NBC A;  1Z01 A;  1FQT A;  2ZYL A;  2B1X A;  4HKV A;  2XRX A;  1NTM E;  4NBA A;  4AIV A;  2BCC E;  2DE5 D;  3GKE A;  3VMH A;  4P1C H;  1EG9 A;  3EN1 A;  4U3F E; 
#chains in the Genus database with same CATH topology
 4QCK A;  1L0L E;  2QJY C;  1KB9 E;  3CWB E;  3DQY A;  4NBD D;  3GL0 A;  5AEW A;  3N0Q A;  2QJP C;  1O7H A;  2GBX A;  2YIU C;  1SQQ E;  3TGU E;  1SQX E;  4QUQ A;  2XSH A;  4HJL A;  1SJG A;  2BMR A;  3L75 E;  2HMJ A;  3VCA A;  4NBF A;  1VM9 A;  5AEU A;  4NBB A;  2DE6 A;  4QDF A;  2FYU E;  1UUW A;  1BE3 E;  1O7N A;  3AZC A;  2HMK A;  2DE7 A;  4NB8 D;  2HMN A;  4OGQ D;  3GTS A;  1Z03 A;  2QPZ A;  4NBE A;  3VMI D;  1PP9 E;  3H1K E;  1KYO E;  4H0L D;  2NVF A;  1BCC E;  1O7P A;  2E4Q A;  1O7W A;  5HL4 A;  3GCE A;  3EQQ A;  1RFS A;  2DE6 D;  4H44 D;  2QJK C;  4HM2 A;  1O7M A;  3GKQ A;  3VMG A;  4PD4 E;  2E76 D;  4NBG A;  1SQP E;  2YFL A;  1P84 E;  4NBC D;  3L71 E;  1SQV E;  3C0D A;  3GCF A;  2JZA A;  2CKF A;  4EMJ B;  2JO6 A;  4QDD A;  4NBA D;  2BMQ A;  4NBE D;  1G8K B;  3VMH D;  1VCK A;  2BMO A;  4HM7 A;  3CX5 E;  3H1L E;  4NBH A;  3VMG D;  4HM0 A;  4NBG D;  2E4P A;  4NB9 A;  5KLV E;  3D89 A;  4HM1 A;  4HM5 A;  4AAY B;  1WW9 A;  3GZX A;  3H1I E;  3CXH E;  3GB4 A;  1NDO A;  3GL2 A;  1RIE A;  2ZT9 D;  1EZV E;  2GBW A;  2B24 A;  1G8J B;  2YFJ A;  2E74 D;  2YFI A;  1WQL A;  1NYK A;  3H1H E;  3L74 E;  2FYN C;  2D2C D;  4NBF D;  4NBB D;  2DE5 A;  1VF5 D;  3L72 E;  4P1B H;  3FOU A;  2IBZ E;  2DE7 D;  2HMO A;  4QUR A;  1PPJ E;  4NBD A;  2HMM A;  1NU1 E;  3L70 E;  1JM1 A;  3BCC E;  4H13 D;  4QUP A;  1ULI A;  2XR8 A;  2I7F A;  4HM3 A;  2NVE A;  5BOK A;  2NVG A;  2YVJ B;  2XSO A;  4HM6 A;  2Q3W A;  3L73 E;  1Z02 A;  1Q90 C;  2NWF A;  4NB8 A;  1L0N E;  2A06 E;  3GZY A;  4HM4 A;  3H1J E;  1SQB E;  1ZRT E;  2NUK A;  3GTE A;  3GOB A;  5KLI C;  3VCP A;  3VMI A;  2NUM A;  4HM8 A;  2E75 D;  5CXM A;  5KKZ C;  1NTK E;  4QDF B;  1NTZ E;  1ULJ A;  1UUV A;  2HML A;  4QDC A;  4NBH D;  4NB9 D;  1O7G A;  4PV1 D;  4NBC A;  1Z01 A;  1FQT A;  2ZYL A;  2B1X A;  4HKV A;  2XRX A;  1NTM E;  4NBA A;  4AIV A;  2BCC E;  2DE5 D;  3GKE A;  3VMH A;  4P1C H;  1EG9 A;  3EN1 A;  4U3F E; 
#chains in the Genus database with same CATH homology
 4QCK A;  1L0L E;  2QJY C;  1KB9 E;  3CWB E;  3DQY A;  4NBD D;  3GL0 A;  5AEW A;  3N0Q A;  2QJP C;  1O7H A;  2GBX A;  2YIU C;  1SQQ E;  3TGU E;  1SQX E;  4QUQ A;  2XSH A;  4HJL A;  1SJG A;  2BMR A;  3L75 E;  2HMJ A;  3VCA A;  4NBF A;  1VM9 A;  5AEU A;  4NBB A;  2DE6 A;  4QDF A;  2FYU E;  1UUW A;  1BE3 E;  1O7N A;  3AZC A;  2HMK A;  2DE7 A;  4NB8 D;  2HMN A;  4OGQ D;  3GTS A;  1Z03 A;  2QPZ A;  4NBE A;  3VMI D;  1PP9 E;  3H1K E;  1KYO E;  4H0L D;  2NVF A;  1BCC E;  1O7P A;  2E4Q A;  1O7W A;  5HL4 A;  3GCE A;  3EQQ A;  1RFS A;  2DE6 D;  4H44 D;  2QJK C;  4HM2 A;  1O7M A;  3GKQ A;  3VMG A;  4PD4 E;  2E76 D;  4NBG A;  1SQP E;  2YFL A;  1P84 E;  4NBC D;  3L71 E;  1SQV E;  3C0D A;  3GCF A;  2JZA A;  2CKF A;  4EMJ B;  2JO6 A;  4QDD A;  4NBA D;  2BMQ A;  4NBE D;  1G8K B;  3VMH D;  1VCK A;  2BMO A;  4HM7 A;  3CX5 E;  3H1L E;  4NBH A;  3VMG D;  4HM0 A;  4NBG D;  2E4P A;  4NB9 A;  5KLV E;  3D89 A;  4HM1 A;  4HM5 A;  4AAY B;  1WW9 A;  3GZX A;  3H1I E;  3CXH E;  3GB4 A;  1NDO A;  3GL2 A;  1RIE A;  2ZT9 D;  1EZV E;  2GBW A;  2B24 A;  1G8J B;  2YFJ A;  2E74 D;  2YFI A;  1WQL A;  1NYK A;  3H1H E;  3L74 E;  2FYN C;  2D2C D;  4NBF D;  4NBB D;  2DE5 A;  1VF5 D;  3L72 E;  4P1B H;  3FOU A;  2IBZ E;  2DE7 D;  2HMO A;  4QUR A;  1PPJ E;  4NBD A;  2HMM A;  1NU1 E;  3L70 E;  1JM1 A;  3BCC E;  4H13 D;  4QUP A;  1ULI A;  2XR8 A;  2I7F A;  4HM3 A;  2NVE A;  5BOK A;  2NVG A;  2YVJ B;  2XSO A;  4HM6 A;  2Q3W A;  3L73 E;  1Z02 A;  1Q90 C;  2NWF A;  4NB8 A;  1L0N E;  2A06 E;  3GZY A;  4HM4 A;  3H1J E;  1SQB E;  1ZRT E;  2NUK A;  3GTE A;  3GOB A;  5KLI C;  3VCP A;  3VMI A;  2NUM A;  4HM8 A;  2E75 D;  5CXM A;  5KKZ C;  1NTK E;  4QDF B;  1NTZ E;  1ULJ A;  1UUV A;  2HML A;  4QDC A;  4NBH D;  4NB9 D;  1O7G A;  4PV1 D;  4NBC A;  1Z01 A;  1FQT A;  2ZYL A;  2B1X A;  4HKV A;  2XRX A;  1NTM E;  4NBA A;  4AIV A;  2BCC E;  2DE5 D;  3GKE A;  3VMH A;  4P1C H;  1EG9 A;  3EN1 A;  4U3F E; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...