3EN1A

Crystal structure of toluene 2,3-dioxygenase
Total Genus 147
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
147
sequence length
426
structure length
424
Chain Sequence
WNTSEIEALFDEHAGRIDPRIYTDEDLYQLELERVFARSWLLLGHETQIRKPGDYITTYMGEDPVVVVRQKDASIAVFLNQCRHRGMRICRADAGNAKAFTCSYHGWAYDTAGNLVNVPYEAESFACLNKKEWSPLKARVETYKGLIFANWDENAVDLDTYLGEAKFYMDHMLDRTEAGTEAIPGVQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGILAGLPEEMADLAPPTVGKQYRASWGGHGSGFYVGDPNLMLAIMGPKVTSYWTEGPASEKAAERLGSVERGSKLMVEHMTVFPTCSFLPGINTVRTWHPRGPNEVEVWAFTVVDADAPDDIKEEFRRQTLRTFSAGGVFEQDDGENWVEIQHILRGHKARSRPFNAEMSMDQTVDNDPVYPGRISNNVYSEEAARGLYAHWLRMMTS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Benzene 1,2-dioxygenase subunit alpha
publication title Structures of the multicomponent Rieske non-heme iron toluene 2,3-dioxygenase enzyme system
pubmed doi rcsb
source organism Pseudomonas putida
total genus 147
structure length 424
sequence length 426
ec nomenclature ec 1.14.12.11: Toluene dioxygenase.
pdb deposition date 2008-09-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3en1A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 3en1A01
4NBED 2HMKA 2BCCE 4HM6A 2QJYC 5KKZC 3L70E 4NB9D 3GTSA 4H0LD 4PD4E 2E74D 1EZVE 1UUVA 3H1JE 1O7HA 3H1LE 1ULIA 4P1CH 1SQQE 2BMOA 5CXMA 2ZYLA 3H1KE 2DE6A 5KLVE 2B24A 4QUQA 2QJKC 4NBEA 1RFSA 1VCKA 1G8JB 2DE7D 2XSOA 3DQYA 1SQBE 4NBHD 2XR8A 1ULJA 2B1XA 4NBDD 4HM5A 4OGQD 2XSHA 4HJLA 2HMOA 3H1IE 1NDOA 2DE5D 2E4PA 4AAYB 3GL2A 2HMJA 2QJPC 3VCPA 2ZT9D 2YIUC 2DE7A 4NBHA 4NBDA 2E4QA 1PPJE 3C0DA 3EN1A 3L71E 1NTME 3GTEA 4NBAD 5AEUA 5AEWA 2JZAA 2NVFA 4QUPA 1O7NA 2DE5A 4AIVA 1NTKE 2YFLA 2BMQA 4HM1A 2XRXA 2NVEA 3GKEA 3GL0A 2JO6A 4NBBD 2NUMA 1PP9E 2E75D 3D89A 4NBAA 1O7GA 4NB9A 3L72E 4HM4A 3GZXA 4NBGD 4P1BH 1RIEA 3AZCA 1Q90C 1NTZE 3N0QA 4HM0A 4H44D 4NBFD 5BOKA 4NB8D 5HL4A 1O7MA 4NBBA 3GB4A 1JM1A 2Q3WA 3CX5E 1EG9A 5KLIC 4NBCD 2I7FA 2GBXA 1Z03A 4NBGA 1SQVE 3VMHD 1KB9E 2E76D 3VMGD 1NU1E 2GBWA 2HMNA 2FYUE 1Z01A 2NUKA 3GKQA 2QPZA 3CXHE 4NBFA 2NWFA 4NB8A 4HKVA 1SQXE 4HM8A 1BCCE 3GZYA 1L0NE 1O7PA 3L74E 3L73E 3L75E 4NBCA 2CKFA 3VCAA 1L0LE 1WQLA 1SQPE 2YVJB 4HM7A 3VMHA 3VMGA 1Z02A 4HM2A 4QCKA 1P84E 1UUWA 4PV1D 2NVGA 3EQQA 1SJGA 2YFJA 4QDCA 2IBZE 1O7WA 3TGUE 1VF5D 3H1HE 3GOBA 4QURA 4QDFB 1WW9A 3GCFA 1ZRTE 2A06E 1NYKA 3VMID 4H13D 3FOUA 2BMRA 4QDFA 4U3FE 4EMJB 1VM9A 1KYOE 2FYNC 3BCCE 2HMLA 1BE3E 4HM3A 2YFIA 3CWBE 2HMMA 4QDDA 1FQTA 2DE6D 3GCEA 1G8KB 2D2CD 3VMIA
chains in the Genus database with same CATH superfamily
4NBED 2HMKA 2BCCE 4HM6A 2QJYC 5KKZC 3L70E 4NB9D 3GTSA 4H0LD 4PD4E 2E74D 1EZVE 1UUVA 3H1JE 1O7HA 3H1LE 1ULIA 4P1CH 1SQQE 2BMOA 5CXMA 2ZYLA 3H1KE 2DE6A 5KLVE 2B24A 4QUQA 2QJKC 4NBEA 1RFSA 1VCKA 1G8JB 2DE7D 2XSOA 3DQYA 1SQBE 4NBHD 2XR8A 1ULJA 2B1XA 4NBDD 4HM5A 4OGQD 2XSHA 4HJLA 2HMOA 3H1IE 1NDOA 2DE5D 2E4PA 4AAYB 3GL2A 2HMJA 2QJPC 3VCPA 2ZT9D 2YIUC 2DE7A 4NBHA 4NBDA 2E4QA 1PPJE 3C0DA 3EN1A 3L71E 1NTME 3GTEA 4NBAD 5AEUA 5AEWA 2JZAA 2NVFA 4QUPA 1O7NA 2DE5A 4AIVA 1NTKE 2YFLA 2BMQA 4HM1A 2XRXA 2NVEA 3GKEA 3GL0A 2JO6A 4NBBD 2NUMA 1PP9E 2E75D 3D89A 4NBAA 1O7GA 4NB9A 3L72E 4HM4A 3GZXA 4NBGD 4P1BH 1RIEA 3AZCA 1Q90C 1NTZE 3N0QA 4HM0A 4H44D 4NBFD 5BOKA 4NB8D 5HL4A 1O7MA 4NBBA 3GB4A 1JM1A 2Q3WA 3CX5E 1EG9A 5KLIC 4NBCD 2I7FA 2GBXA 1Z03A 4NBGA 1SQVE 3VMHD 1KB9E 2E76D 3VMGD 1NU1E 2GBWA 2HMNA 2FYUE 1Z01A 2NUKA 3GKQA 2QPZA 3CXHE 4NBFA 2NWFA 4NB8A 4HKVA 1SQXE 4HM8A 1BCCE 3GZYA 1L0NE 1O7PA 3L74E 3L73E 3L75E 4NBCA 2CKFA 3VCAA 1L0LE 1WQLA 1SQPE 2YVJB 4HM7A 3VMHA 3VMGA 1Z02A 4HM2A 4QCKA 1P84E 1UUWA 4PV1D 2NVGA 3EQQA 1SJGA 2YFJA 4QDCA 2IBZE 1O7WA 3TGUE 1VF5D 3H1HE 3GOBA 4QURA 4QDFB 1WW9A 3GCFA 1ZRTE 2A06E 1NYKA 3VMID 4H13D 3FOUA 2BMRA 4QDFA 4U3FE 4EMJB 1VM9A 1KYOE 2FYNC 3BCCE 2HMLA 1BE3E 4HM3A 2YFIA 3CWBE 2HMMA 4QDDA 1FQTA 2DE6D 3GCEA 1G8KB 2D2CD 3VMIA
chains in the Genus database with same CATH topology
4NBED 2HMKA 2BCCE 4HM6A 2QJYC 5KKZC 3L70E 4NB9D 3GTSA 4H0LD 4PD4E 2E74D 1EZVE 1UUVA 3H1JE 1O7HA 3H1LE 1ULIA 4P1CH 1SQQE 2BMOA 5CXMA 2ZYLA 3H1KE 2DE6A 5KLVE 2B24A 4QUQA 2QJKC 4NBEA 1RFSA 1VCKA 1G8JB 2DE7D 2XSOA 3DQYA 1SQBE 4NBHD 2XR8A 1ULJA 2B1XA 4NBDD 4HM5A 4OGQD 2XSHA 4HJLA 2HMOA 3H1IE 1NDOA 2DE5D 2E4PA 4AAYB 3GL2A 2HMJA 2QJPC 3VCPA 2ZT9D 2YIUC 2DE7A 4NBHA 4NBDA 2E4QA 1PPJE 3C0DA 3EN1A 3L71E 1NTME 3GTEA 4NBAD 5AEUA 5AEWA 2JZAA 2NVFA 4QUPA 1O7NA 2DE5A 4AIVA 1NTKE 2YFLA 2BMQA 4HM1A 2XRXA 2NVEA 3GKEA 3GL0A 2JO6A 4NBBD 2NUMA 1PP9E 2E75D 3D89A 4NBAA 1O7GA 4NB9A 3L72E 4HM4A 3GZXA 4NBGD 4P1BH 1RIEA 3AZCA 1Q90C 1NTZE 3N0QA 4HM0A 4H44D 4NBFD 5BOKA 4NB8D 5HL4A 1O7MA 4NBBA 3GB4A 1JM1A 2Q3WA 3CX5E 1EG9A 5KLIC 4NBCD 2I7FA 2GBXA 1Z03A 4NBGA 1SQVE 3VMHD 1KB9E 2E76D 3VMGD 1NU1E 2GBWA 2HMNA 2FYUE 1Z01A 2NUKA 3GKQA 2QPZA 3CXHE 4NBFA 2NWFA 4NB8A 4HKVA 1SQXE 4HM8A 1BCCE 3GZYA 1L0NE 1O7PA 3L74E 3L73E 3L75E 4NBCA 2CKFA 3VCAA 1L0LE 1WQLA 1SQPE 2YVJB 4HM7A 3VMHA 3VMGA 1Z02A 4HM2A 4QCKA 1P84E 1UUWA 4PV1D 2NVGA 3EQQA 1SJGA 2YFJA 4QDCA 2IBZE 1O7WA 3TGUE 1VF5D 3H1HE 3GOBA 4QURA 4QDFB 1WW9A 3GCFA 1ZRTE 2A06E 1NYKA 3VMID 4H13D 3FOUA 2BMRA 4QDFA 4U3FE 4EMJB 1VM9A 1KYOE 2FYNC 3BCCE 2HMLA 1BE3E 4HM3A 2YFIA 3CWBE 2HMMA 4QDDA 1FQTA 2DE6D 3GCEA 1G8KB 2D2CD 3VMIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NBE D;  2HMK A;  2BCC E;  4HM6 A;  2QJY C;  5KKZ C;  3L70 E;  4NB9 D;  3GTS A;  4H0L D;  4PD4 E;  2E74 D;  1EZV E;  1UUV A;  3H1J E;  1O7H A;  3H1L E;  1ULI A;  4P1C H;  1SQQ E;  2BMO A;  5CXM A;  2ZYL A;  3H1K E;  2DE6 A;  5KLV E;  2B24 A;  4QUQ A;  2QJK C;  4NBE A;  1RFS A;  1VCK A;  1G8J B;  2DE7 D;  2XSO A;  3DQY A;  1SQB E;  4NBH D;  2XR8 A;  1ULJ A;  2B1X A;  4NBD D;  4HM5 A;  4OGQ D;  2XSH A;  4HJL A;  2HMO A;  3H1I E;  1NDO A;  2DE5 D;  2E4P A;  4AAY B;  3GL2 A;  2HMJ A;  2QJP C;  3VCP A;  2ZT9 D;  2YIU C;  2DE7 A;  4NBH A;  4NBD A;  2E4Q A;  1PPJ E;  3C0D A;  3EN1 A;  3L71 E;  1NTM E;  3GTE A;  4NBA D;  5AEU A;  5AEW A;  2JZA A;  2NVF A;  4QUP A;  1O7N A;  2DE5 A;  4AIV A;  1NTK E;  2YFL A;  2BMQ A;  4HM1 A;  2XRX A;  2NVE A;  3GKE A;  3GL0 A;  2JO6 A;  4NBB D;  2NUM A;  1PP9 E;  2E75 D;  3D89 A;  4NBA A;  1O7G A;  4NB9 A;  3L72 E;  4HM4 A;  3GZX A;  4NBG D;  4P1B H;  1RIE A;  3AZC A;  1Q90 C;  1NTZ E;  3N0Q A;  4HM0 A;  4H44 D;  4NBF D;  5BOK A;  4NB8 D;  5HL4 A;  1O7M A;  4NBB A;  3GB4 A;  1JM1 A;  2Q3W A;  3CX5 E;  1EG9 A;  5KLI C;  4NBC D;  2I7F A;  2GBX A;  1Z03 A;  4NBG A;  1SQV E;  3VMH D;  1KB9 E;  2E76 D;  3VMG D;  1NU1 E;  2GBW A;  2HMN A;  2FYU E;  1Z01 A;  2NUK A;  3GKQ A;  2QPZ A;  3CXH E;  4NBF A;  2NWF A;  4NB8 A;  4HKV A;  1SQX E;  4HM8 A;  1BCC E;  3GZY A;  1L0N E;  1O7P A;  3L74 E;  3L73 E;  3L75 E;  4NBC A;  2CKF A;  3VCA A;  1L0L E;  1WQL A;  1SQP E;  2YVJ B;  4HM7 A;  3VMH A;  3VMG A;  1Z02 A;  4HM2 A;  4QCK A;  1P84 E;  1UUW A;  4PV1 D;  2NVG A;  3EQQ A;  1SJG A;  2YFJ A;  4QDC A;  2IBZ E;  1O7W A;  3TGU E;  1VF5 D;  3H1H E;  3GOB A;  4QUR A;  4QDF B;  1WW9 A;  3GCF A;  1ZRT E;  2A06 E;  1NYK A;  3VMI D;  4H13 D;  3FOU A;  2BMR A;  4QDF A;  4U3F E;  4EMJ B;  1VM9 A;  1KYO E;  2FYN C;  3BCC E;  2HML A;  1BE3 E;  4HM3 A;  2YFI A;  3CWB E;  2HMM A;  4QDD A;  1FQT A;  2DE6 D;  3GCE A;  1G8K B;  2D2C D;  3VMI A; 
#chains in the Genus database with same CATH topology
 4NBE D;  2HMK A;  2BCC E;  4HM6 A;  2QJY C;  5KKZ C;  3L70 E;  4NB9 D;  3GTS A;  4H0L D;  4PD4 E;  2E74 D;  1EZV E;  1UUV A;  3H1J E;  1O7H A;  3H1L E;  1ULI A;  4P1C H;  1SQQ E;  2BMO A;  5CXM A;  2ZYL A;  3H1K E;  2DE6 A;  5KLV E;  2B24 A;  4QUQ A;  2QJK C;  4NBE A;  1RFS A;  1VCK A;  1G8J B;  2DE7 D;  2XSO A;  3DQY A;  1SQB E;  4NBH D;  2XR8 A;  1ULJ A;  2B1X A;  4NBD D;  4HM5 A;  4OGQ D;  2XSH A;  4HJL A;  2HMO A;  3H1I E;  1NDO A;  2DE5 D;  2E4P A;  4AAY B;  3GL2 A;  2HMJ A;  2QJP C;  3VCP A;  2ZT9 D;  2YIU C;  2DE7 A;  4NBH A;  4NBD A;  2E4Q A;  1PPJ E;  3C0D A;  3EN1 A;  3L71 E;  1NTM E;  3GTE A;  4NBA D;  5AEU A;  5AEW A;  2JZA A;  2NVF A;  4QUP A;  1O7N A;  2DE5 A;  4AIV A;  1NTK E;  2YFL A;  2BMQ A;  4HM1 A;  2XRX A;  2NVE A;  3GKE A;  3GL0 A;  2JO6 A;  4NBB D;  2NUM A;  1PP9 E;  2E75 D;  3D89 A;  4NBA A;  1O7G A;  4NB9 A;  3L72 E;  4HM4 A;  3GZX A;  4NBG D;  4P1B H;  1RIE A;  3AZC A;  1Q90 C;  1NTZ E;  3N0Q A;  4HM0 A;  4H44 D;  4NBF D;  5BOK A;  4NB8 D;  5HL4 A;  1O7M A;  4NBB A;  3GB4 A;  1JM1 A;  2Q3W A;  3CX5 E;  1EG9 A;  5KLI C;  4NBC D;  2I7F A;  2GBX A;  1Z03 A;  4NBG A;  1SQV E;  3VMH D;  1KB9 E;  2E76 D;  3VMG D;  1NU1 E;  2GBW A;  2HMN A;  2FYU E;  1Z01 A;  2NUK A;  3GKQ A;  2QPZ A;  3CXH E;  4NBF A;  2NWF A;  4NB8 A;  4HKV A;  1SQX E;  4HM8 A;  1BCC E;  3GZY A;  1L0N E;  1O7P A;  3L74 E;  3L73 E;  3L75 E;  4NBC A;  2CKF A;  3VCA A;  1L0L E;  1WQL A;  1SQP E;  2YVJ B;  4HM7 A;  3VMH A;  3VMG A;  1Z02 A;  4HM2 A;  4QCK A;  1P84 E;  1UUW A;  4PV1 D;  2NVG A;  3EQQ A;  1SJG A;  2YFJ A;  4QDC A;  2IBZ E;  1O7W A;  3TGU E;  1VF5 D;  3H1H E;  3GOB A;  4QUR A;  4QDF B;  1WW9 A;  3GCF A;  1ZRT E;  2A06 E;  1NYK A;  3VMI D;  4H13 D;  3FOU A;  2BMR A;  4QDF A;  4U3F E;  4EMJ B;  1VM9 A;  1KYO E;  2FYN C;  3BCC E;  2HML A;  1BE3 E;  4HM3 A;  2YFI A;  3CWB E;  2HMM A;  4QDD A;  1FQT A;  2DE6 D;  3GCE A;  1G8K B;  2D2C D;  3VMI A; 
#chains in the Genus database with same CATH homology
 4NBE D;  2HMK A;  2BCC E;  4HM6 A;  2QJY C;  5KKZ C;  3L70 E;  4NB9 D;  3GTS A;  4H0L D;  4PD4 E;  2E74 D;  1EZV E;  1UUV A;  3H1J E;  1O7H A;  3H1L E;  1ULI A;  4P1C H;  1SQQ E;  2BMO A;  5CXM A;  2ZYL A;  3H1K E;  2DE6 A;  5KLV E;  2B24 A;  4QUQ A;  2QJK C;  4NBE A;  1RFS A;  1VCK A;  1G8J B;  2DE7 D;  2XSO A;  3DQY A;  1SQB E;  4NBH D;  2XR8 A;  1ULJ A;  2B1X A;  4NBD D;  4HM5 A;  4OGQ D;  2XSH A;  4HJL A;  2HMO A;  3H1I E;  1NDO A;  2DE5 D;  2E4P A;  4AAY B;  3GL2 A;  2HMJ A;  2QJP C;  3VCP A;  2ZT9 D;  2YIU C;  2DE7 A;  4NBH A;  4NBD A;  2E4Q A;  1PPJ E;  3C0D A;  3EN1 A;  3L71 E;  1NTM E;  3GTE A;  4NBA D;  5AEU A;  5AEW A;  2JZA A;  2NVF A;  4QUP A;  1O7N A;  2DE5 A;  4AIV A;  1NTK E;  2YFL A;  2BMQ A;  4HM1 A;  2XRX A;  2NVE A;  3GKE A;  3GL0 A;  2JO6 A;  4NBB D;  2NUM A;  1PP9 E;  2E75 D;  3D89 A;  4NBA A;  1O7G A;  4NB9 A;  3L72 E;  4HM4 A;  3GZX A;  4NBG D;  4P1B H;  1RIE A;  3AZC A;  1Q90 C;  1NTZ E;  3N0Q A;  4HM0 A;  4H44 D;  4NBF D;  5BOK A;  4NB8 D;  5HL4 A;  1O7M A;  4NBB A;  3GB4 A;  1JM1 A;  2Q3W A;  3CX5 E;  1EG9 A;  5KLI C;  4NBC D;  2I7F A;  2GBX A;  1Z03 A;  4NBG A;  1SQV E;  3VMH D;  1KB9 E;  2E76 D;  3VMG D;  1NU1 E;  2GBW A;  2HMN A;  2FYU E;  1Z01 A;  2NUK A;  3GKQ A;  2QPZ A;  3CXH E;  4NBF A;  2NWF A;  4NB8 A;  4HKV A;  1SQX E;  4HM8 A;  1BCC E;  3GZY A;  1L0N E;  1O7P A;  3L74 E;  3L73 E;  3L75 E;  4NBC A;  2CKF A;  3VCA A;  1L0L E;  1WQL A;  1SQP E;  2YVJ B;  4HM7 A;  3VMH A;  3VMG A;  1Z02 A;  4HM2 A;  4QCK A;  1P84 E;  1UUW A;  4PV1 D;  2NVG A;  3EQQ A;  1SJG A;  2YFJ A;  4QDC A;  2IBZ E;  1O7W A;  3TGU E;  1VF5 D;  3H1H E;  3GOB A;  4QUR A;  4QDF B;  1WW9 A;  3GCF A;  1ZRT E;  2A06 E;  1NYK A;  3VMI D;  4H13 D;  3FOU A;  2BMR A;  4QDF A;  4U3F E;  4EMJ B;  1VM9 A;  1KYO E;  2FYN C;  3BCC E;  2HML A;  1BE3 E;  4HM3 A;  2YFI A;  3CWB E;  2HMM A;  4QDD A;  1FQT A;  2DE6 D;  3GCE A;  1G8K B;  2D2C D;  3VMI A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...