3EN1A

Crystal structure of toluene 2,3-dioxygenase
Total Genus 147
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
147
sequence length
426
structure length
424
Chain Sequence
WNTSEIEALFDEHAGRIDPRIYTDEDLYQLELERVFARSWLLLGHETQIRKPGDYITTYMGEDPVVVVRQKDASIAVFLNQCRHRGMRICRADAGNAKAFTCSYHGWAYDTAGNLVNVPYEAESFACLNKKEWSPLKARVETYKGLIFANWDENAVDLDTYLGEAKFYMDHMLDRTEAGTEAIPGVQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGILAGLPEEMADLAPPTVGKQYRASWGGHGSGFYVGDPNLMLAIMGPKVTSYWTEGPASEKAAERLGSVERGSKLMVEHMTVFPTCSFLPGINTVRTWHPRGPNEVEVWAFTVVDADAPDDIKEEFRRQTLRTFSAGGVFEQDDGENWVEIQHILRGHKARSRPFNAEMSMDQTVDNDPVYPGRISNNVYSEEAARGLYAHWLRMMTS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Benzene 1,2-dioxygenase subunit alpha
publication title Structures of the multicomponent Rieske non-heme iron toluene 2,3-dioxygenase enzyme system
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Oxidoreductase
total genus 147
structure length 424
sequence length 426
ec nomenclature ec 1.14.12.11: Toluene dioxygenase.
pdb deposition date 2008-09-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3en1A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 3en1A01
2NVEA 3EN1A 3AZCA 1O7GA 4QUPA 2E76D 3D89A 1ULIA 4OGQD 3CXHE 1RIEA 1O7HA 1UUWA 1WQLA 2A06E 3GKEA 3VMGA 1Z01A 1SQQE 1EG9A 3EQQA 2I7FA 4P1BH 4NBAD 5CXMA 3DQYA 1SQBE 4AAYB 4HM1A 1SQXE 1KYOE 3C0DA 4QDFA 3L71E 3VMHD 2Q3WA 4NBDA 3GTEA 4PV1D 2E75D 4NBAA 1EZVE 1O7NA 1PPJE 1Q90C 1WW9A 2XSHA 4QCKA 1L0NE 4HM6A 2BMOA 2XR8A 4HJLA 2BMRA 2D2CD 5KKZC 3VMHA 2ZYLA 2NUMA 3H1LE 2XRXA 1G8KB 4HM8A 4NBDD 3BCCE 4NBFD 3VCPA 1PP9E 3L75E 4NBGD 5AEUA 5KLVE 1SJGA 4H0LD 4H13D 4HM5A 5HL4A 4H44D 2B24A 1NDOA 4NBED 3GL0A 2QJPC 3GZXA 3GCEA 1UUVA 2YIUC 4HM3A 2HMMA 4NBBD 1G8JB 3GB4A 4NBFA 1SQVE 2BMQA 1BE3E 2HMJA 3L74E 4NBGA 3GTSA 4QDFB 2QJYC 2YVJB 2YFLA 1NYKA 3CWBE 4EMJB 1VF5D 4HM7A 4NBEA 1O7MA 2YFJA 2QPZA 4NBBA 1VCKA 4QUQA 1KB9E 3GZYA 2FYNC 3H1IE 2CKFA 2NVFA 3VMID 2E4PA 2HMOA 2IBZE 3FOUA 2GBXA 3L70E 1SQPE 4HM0A 2ZT9D 2FYUE 3H1JE 2HMLA 3TGUE 3VMIA 1NU1E 1O7PA 2JZAA 1JM1A 3H1HE 4NB9D 1VM9A 1NTME 4QDCA 1Z02A 1NTZE 2YFIA 2DE5D 4NBCD 4NB8A 3GOBA 4HM2A 4PD4E 4NBHD 2NVGA 2XSOA 4QURA 2E4QA 5KLIC 5BOKA 1BCCE 3L73E 4AIVA 1Z03A 1O7WA 1P84E 4NB9A 2NUKA 3N0QA 3GKQA 4U3FE 1RFSA 2DE5A 4NBCA 1NTKE 2DE7D 2DE6D 4HKVA 3GL2A 4NBHA 3L72E 2BCCE 3VCAA 1ZRTE 2HMKA 3GCFA 1L0LE 3CX5E 4P1CH 5AEWA 4HM4A 4NB8D 2NWFA 2GBWA 2DE7A 2HMNA 2JO6A 2E74D 1ULJA 2B1XA 2QJKC 4QDDA 3VMGD 2DE6A 1FQTA 3H1KE
chains in the Genus database with same CATH superfamily
2NVEA 3EN1A 3AZCA 1O7GA 4QUPA 2E76D 3D89A 1ULIA 4OGQD 3CXHE 1RIEA 1O7HA 1UUWA 1WQLA 2A06E 3GKEA 3VMGA 1Z01A 1SQQE 1EG9A 3EQQA 2I7FA 4P1BH 4NBAD 5CXMA 3DQYA 1SQBE 4AAYB 4HM1A 1SQXE 1KYOE 3C0DA 4QDFA 3L71E 3VMHD 2Q3WA 4NBDA 3GTEA 4PV1D 2E75D 4NBAA 1EZVE 1O7NA 1PPJE 1Q90C 1WW9A 2XSHA 4QCKA 1L0NE 4HM6A 2BMOA 2XR8A 4HJLA 2BMRA 2D2CD 5KKZC 3VMHA 2ZYLA 2NUMA 3H1LE 2XRXA 1G8KB 4HM8A 4NBDD 3BCCE 4NBFD 3VCPA 1PP9E 3L75E 4NBGD 5AEUA 5KLVE 1SJGA 4H0LD 4H13D 4HM5A 5HL4A 4H44D 2B24A 1NDOA 4NBED 3GL0A 2QJPC 3GZXA 3GCEA 1UUVA 2YIUC 4HM3A 2HMMA 4NBBD 1G8JB 3GB4A 4NBFA 1SQVE 2BMQA 1BE3E 2HMJA 3L74E 4NBGA 3GTSA 4QDFB 2QJYC 2YVJB 2YFLA 1NYKA 3CWBE 4EMJB 1VF5D 4HM7A 4NBEA 1O7MA 2YFJA 2QPZA 4NBBA 1VCKA 4QUQA 1KB9E 3GZYA 2FYNC 3H1IE 2CKFA 2NVFA 3VMID 2E4PA 2HMOA 2IBZE 3FOUA 2GBXA 3L70E 1SQPE 4HM0A 2ZT9D 2FYUE 3H1JE 2HMLA 3TGUE 3VMIA 1NU1E 1O7PA 2JZAA 1JM1A 3H1HE 4NB9D 1VM9A 1NTME 4QDCA 1Z02A 1NTZE 2YFIA 2DE5D 4NBCD 4NB8A 3GOBA 4HM2A 4PD4E 4NBHD 2NVGA 2XSOA 4QURA 2E4QA 5KLIC 5BOKA 1BCCE 3L73E 4AIVA 1Z03A 1O7WA 1P84E 4NB9A 2NUKA 3N0QA 3GKQA 4U3FE 1RFSA 2DE5A 4NBCA 1NTKE 2DE7D 2DE6D 4HKVA 3GL2A 4NBHA 3L72E 2BCCE 3VCAA 1ZRTE 2HMKA 3GCFA 1L0LE 3CX5E 4P1CH 5AEWA 4HM4A 4NB8D 2NWFA 2GBWA 2DE7A 2HMNA 2JO6A 2E74D 1ULJA 2B1XA 2QJKC 4QDDA 3VMGD 2DE6A 1FQTA 3H1KE
chains in the Genus database with same CATH topology
2NVEA 3EN1A 3AZCA 1O7GA 4QUPA 2E76D 3D89A 1ULIA 4OGQD 3CXHE 1RIEA 1O7HA 1UUWA 1WQLA 2A06E 3GKEA 3VMGA 1Z01A 1SQQE 1EG9A 3EQQA 2I7FA 4P1BH 4NBAD 5CXMA 3DQYA 1SQBE 4AAYB 4HM1A 1SQXE 1KYOE 3C0DA 4QDFA 3L71E 3VMHD 2Q3WA 4NBDA 3GTEA 4PV1D 2E75D 4NBAA 1EZVE 1O7NA 1PPJE 1Q90C 1WW9A 2XSHA 4QCKA 1L0NE 4HM6A 2BMOA 2XR8A 4HJLA 2BMRA 2D2CD 5KKZC 3VMHA 2ZYLA 2NUMA 3H1LE 2XRXA 1G8KB 4HM8A 4NBDD 3BCCE 4NBFD 3VCPA 1PP9E 3L75E 4NBGD 5AEUA 5KLVE 1SJGA 4H0LD 4H13D 4HM5A 5HL4A 4H44D 2B24A 1NDOA 4NBED 3GL0A 2QJPC 3GZXA 3GCEA 1UUVA 2YIUC 4HM3A 2HMMA 4NBBD 1G8JB 3GB4A 4NBFA 1SQVE 2BMQA 1BE3E 2HMJA 3L74E 4NBGA 3GTSA 4QDFB 2QJYC 2YVJB 2YFLA 1NYKA 3CWBE 4EMJB 1VF5D 4HM7A 4NBEA 1O7MA 2YFJA 2QPZA 4NBBA 1VCKA 4QUQA 1KB9E 3GZYA 2FYNC 3H1IE 2CKFA 2NVFA 3VMID 2E4PA 2HMOA 2IBZE 3FOUA 2GBXA 3L70E 1SQPE 4HM0A 2ZT9D 2FYUE 3H1JE 2HMLA 3TGUE 3VMIA 1NU1E 1O7PA 2JZAA 1JM1A 3H1HE 4NB9D 1VM9A 1NTME 4QDCA 1Z02A 1NTZE 2YFIA 2DE5D 4NBCD 4NB8A 3GOBA 4HM2A 4PD4E 4NBHD 2NVGA 2XSOA 4QURA 2E4QA 5KLIC 5BOKA 1BCCE 3L73E 4AIVA 1Z03A 1O7WA 1P84E 4NB9A 2NUKA 3N0QA 3GKQA 4U3FE 1RFSA 2DE5A 4NBCA 1NTKE 2DE7D 2DE6D 4HKVA 3GL2A 4NBHA 3L72E 2BCCE 3VCAA 1ZRTE 2HMKA 3GCFA 1L0LE 3CX5E 4P1CH 5AEWA 4HM4A 4NB8D 2NWFA 2GBWA 2DE7A 2HMNA 2JO6A 2E74D 1ULJA 2B1XA 2QJKC 4QDDA 3VMGD 2DE6A 1FQTA 3H1KE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NVE A;  3EN1 A;  3AZC A;  1O7G A;  4QUP A;  2E76 D;  3D89 A;  1ULI A;  4OGQ D;  3CXH E;  1RIE A;  1O7H A;  1UUW A;  1WQL A;  2A06 E;  3GKE A;  3VMG A;  1Z01 A;  1SQQ E;  1EG9 A;  3EQQ A;  2I7F A;  4P1B H;  4NBA D;  5CXM A;  3DQY A;  1SQB E;  4AAY B;  4HM1 A;  1SQX E;  1KYO E;  3C0D A;  4QDF A;  3L71 E;  3VMH D;  2Q3W A;  4NBD A;  3GTE A;  4PV1 D;  2E75 D;  4NBA A;  1EZV E;  1O7N A;  1PPJ E;  1Q90 C;  1WW9 A;  2XSH A;  4QCK A;  1L0N E;  4HM6 A;  2BMO A;  2XR8 A;  4HJL A;  2BMR A;  2D2C D;  5KKZ C;  3VMH A;  2ZYL A;  2NUM A;  3H1L E;  2XRX A;  1G8K B;  4HM8 A;  4NBD D;  3BCC E;  4NBF D;  3VCP A;  1PP9 E;  3L75 E;  4NBG D;  5AEU A;  5KLV E;  1SJG A;  4H0L D;  4H13 D;  4HM5 A;  5HL4 A;  4H44 D;  2B24 A;  1NDO A;  4NBE D;  3GL0 A;  2QJP C;  3GZX A;  3GCE A;  1UUV A;  2YIU C;  4HM3 A;  2HMM A;  4NBB D;  1G8J B;  3GB4 A;  4NBF A;  1SQV E;  2BMQ A;  1BE3 E;  2HMJ A;  3L74 E;  4NBG A;  3GTS A;  4QDF B;  2QJY C;  2YVJ B;  2YFL A;  1NYK A;  3CWB E;  4EMJ B;  1VF5 D;  4HM7 A;  4NBE A;  1O7M A;  2YFJ A;  2QPZ A;  4NBB A;  1VCK A;  4QUQ A;  1KB9 E;  3GZY A;  2FYN C;  3H1I E;  2CKF A;  2NVF A;  3VMI D;  2E4P A;  2HMO A;  2IBZ E;  3FOU A;  2GBX A;  3L70 E;  1SQP E;  4HM0 A;  2ZT9 D;  2FYU E;  3H1J E;  2HML A;  3TGU E;  3VMI A;  1NU1 E;  1O7P A;  2JZA A;  1JM1 A;  3H1H E;  4NB9 D;  1VM9 A;  1NTM E;  4QDC A;  1Z02 A;  1NTZ E;  2YFI A;  2DE5 D;  4NBC D;  4NB8 A;  3GOB A;  4HM2 A;  4PD4 E;  4NBH D;  2NVG A;  2XSO A;  4QUR A;  2E4Q A;  5KLI C;  5BOK A;  1BCC E;  3L73 E;  4AIV A;  1Z03 A;  1O7W A;  1P84 E;  4NB9 A;  2NUK A;  3N0Q A;  3GKQ A;  4U3F E;  1RFS A;  2DE5 A;  4NBC A;  1NTK E;  2DE7 D;  2DE6 D;  4HKV A;  3GL2 A;  4NBH A;  3L72 E;  2BCC E;  3VCA A;  1ZRT E;  2HMK A;  3GCF A;  1L0L E;  3CX5 E;  4P1C H;  5AEW A;  4HM4 A;  4NB8 D;  2NWF A;  2GBW A;  2DE7 A;  2HMN A;  2JO6 A;  2E74 D;  1ULJ A;  2B1X A;  2QJK C;  4QDD A;  3VMG D;  2DE6 A;  1FQT A;  3H1K E; 
#chains in the Genus database with same CATH topology
 2NVE A;  3EN1 A;  3AZC A;  1O7G A;  4QUP A;  2E76 D;  3D89 A;  1ULI A;  4OGQ D;  3CXH E;  1RIE A;  1O7H A;  1UUW A;  1WQL A;  2A06 E;  3GKE A;  3VMG A;  1Z01 A;  1SQQ E;  1EG9 A;  3EQQ A;  2I7F A;  4P1B H;  4NBA D;  5CXM A;  3DQY A;  1SQB E;  4AAY B;  4HM1 A;  1SQX E;  1KYO E;  3C0D A;  4QDF A;  3L71 E;  3VMH D;  2Q3W A;  4NBD A;  3GTE A;  4PV1 D;  2E75 D;  4NBA A;  1EZV E;  1O7N A;  1PPJ E;  1Q90 C;  1WW9 A;  2XSH A;  4QCK A;  1L0N E;  4HM6 A;  2BMO A;  2XR8 A;  4HJL A;  2BMR A;  2D2C D;  5KKZ C;  3VMH A;  2ZYL A;  2NUM A;  3H1L E;  2XRX A;  1G8K B;  4HM8 A;  4NBD D;  3BCC E;  4NBF D;  3VCP A;  1PP9 E;  3L75 E;  4NBG D;  5AEU A;  5KLV E;  1SJG A;  4H0L D;  4H13 D;  4HM5 A;  5HL4 A;  4H44 D;  2B24 A;  1NDO A;  4NBE D;  3GL0 A;  2QJP C;  3GZX A;  3GCE A;  1UUV A;  2YIU C;  4HM3 A;  2HMM A;  4NBB D;  1G8J B;  3GB4 A;  4NBF A;  1SQV E;  2BMQ A;  1BE3 E;  2HMJ A;  3L74 E;  4NBG A;  3GTS A;  4QDF B;  2QJY C;  2YVJ B;  2YFL A;  1NYK A;  3CWB E;  4EMJ B;  1VF5 D;  4HM7 A;  4NBE A;  1O7M A;  2YFJ A;  2QPZ A;  4NBB A;  1VCK A;  4QUQ A;  1KB9 E;  3GZY A;  2FYN C;  3H1I E;  2CKF A;  2NVF A;  3VMI D;  2E4P A;  2HMO A;  2IBZ E;  3FOU A;  2GBX A;  3L70 E;  1SQP E;  4HM0 A;  2ZT9 D;  2FYU E;  3H1J E;  2HML A;  3TGU E;  3VMI A;  1NU1 E;  1O7P A;  2JZA A;  1JM1 A;  3H1H E;  4NB9 D;  1VM9 A;  1NTM E;  4QDC A;  1Z02 A;  1NTZ E;  2YFI A;  2DE5 D;  4NBC D;  4NB8 A;  3GOB A;  4HM2 A;  4PD4 E;  4NBH D;  2NVG A;  2XSO A;  4QUR A;  2E4Q A;  5KLI C;  5BOK A;  1BCC E;  3L73 E;  4AIV A;  1Z03 A;  1O7W A;  1P84 E;  4NB9 A;  2NUK A;  3N0Q A;  3GKQ A;  4U3F E;  1RFS A;  2DE5 A;  4NBC A;  1NTK E;  2DE7 D;  2DE6 D;  4HKV A;  3GL2 A;  4NBH A;  3L72 E;  2BCC E;  3VCA A;  1ZRT E;  2HMK A;  3GCF A;  1L0L E;  3CX5 E;  4P1C H;  5AEW A;  4HM4 A;  4NB8 D;  2NWF A;  2GBW A;  2DE7 A;  2HMN A;  2JO6 A;  2E74 D;  1ULJ A;  2B1X A;  2QJK C;  4QDD A;  3VMG D;  2DE6 A;  1FQT A;  3H1K E; 
#chains in the Genus database with same CATH homology
 2NVE A;  3EN1 A;  3AZC A;  1O7G A;  4QUP A;  2E76 D;  3D89 A;  1ULI A;  4OGQ D;  3CXH E;  1RIE A;  1O7H A;  1UUW A;  1WQL A;  2A06 E;  3GKE A;  3VMG A;  1Z01 A;  1SQQ E;  1EG9 A;  3EQQ A;  2I7F A;  4P1B H;  4NBA D;  5CXM A;  3DQY A;  1SQB E;  4AAY B;  4HM1 A;  1SQX E;  1KYO E;  3C0D A;  4QDF A;  3L71 E;  3VMH D;  2Q3W A;  4NBD A;  3GTE A;  4PV1 D;  2E75 D;  4NBA A;  1EZV E;  1O7N A;  1PPJ E;  1Q90 C;  1WW9 A;  2XSH A;  4QCK A;  1L0N E;  4HM6 A;  2BMO A;  2XR8 A;  4HJL A;  2BMR A;  2D2C D;  5KKZ C;  3VMH A;  2ZYL A;  2NUM A;  3H1L E;  2XRX A;  1G8K B;  4HM8 A;  4NBD D;  3BCC E;  4NBF D;  3VCP A;  1PP9 E;  3L75 E;  4NBG D;  5AEU A;  5KLV E;  1SJG A;  4H0L D;  4H13 D;  4HM5 A;  5HL4 A;  4H44 D;  2B24 A;  1NDO A;  4NBE D;  3GL0 A;  2QJP C;  3GZX A;  3GCE A;  1UUV A;  2YIU C;  4HM3 A;  2HMM A;  4NBB D;  1G8J B;  3GB4 A;  4NBF A;  1SQV E;  2BMQ A;  1BE3 E;  2HMJ A;  3L74 E;  4NBG A;  3GTS A;  4QDF B;  2QJY C;  2YVJ B;  2YFL A;  1NYK A;  3CWB E;  4EMJ B;  1VF5 D;  4HM7 A;  4NBE A;  1O7M A;  2YFJ A;  2QPZ A;  4NBB A;  1VCK A;  4QUQ A;  1KB9 E;  3GZY A;  2FYN C;  3H1I E;  2CKF A;  2NVF A;  3VMI D;  2E4P A;  2HMO A;  2IBZ E;  3FOU A;  2GBX A;  3L70 E;  1SQP E;  4HM0 A;  2ZT9 D;  2FYU E;  3H1J E;  2HML A;  3TGU E;  3VMI A;  1NU1 E;  1O7P A;  2JZA A;  1JM1 A;  3H1H E;  4NB9 D;  1VM9 A;  1NTM E;  4QDC A;  1Z02 A;  1NTZ E;  2YFI A;  2DE5 D;  4NBC D;  4NB8 A;  3GOB A;  4HM2 A;  4PD4 E;  4NBH D;  2NVG A;  2XSO A;  4QUR A;  2E4Q A;  5KLI C;  5BOK A;  1BCC E;  3L73 E;  4AIV A;  1Z03 A;  1O7W A;  1P84 E;  4NB9 A;  2NUK A;  3N0Q A;  3GKQ A;  4U3F E;  1RFS A;  2DE5 A;  4NBC A;  1NTK E;  2DE7 D;  2DE6 D;  4HKV A;  3GL2 A;  4NBH A;  3L72 E;  2BCC E;  3VCA A;  1ZRT E;  2HMK A;  3GCF A;  1L0L E;  3CX5 E;  4P1C H;  5AEW A;  4HM4 A;  4NB8 D;  2NWF A;  2GBW A;  2DE7 A;  2HMN A;  2JO6 A;  2E74 D;  1ULJ A;  2B1X A;  2QJK C;  4QDD A;  3VMG D;  2DE6 A;  1FQT A;  3H1K E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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