3EN1A

Crystal structure of toluene 2,3-dioxygenase
Total Genus 147
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
147
sequence length
426
structure length
424
Chain Sequence
WNTSEIEALFDEHAGRIDPRIYTDEDLYQLELERVFARSWLLLGHETQIRKPGDYITTYMGEDPVVVVRQKDASIAVFLNQCRHRGMRICRADAGNAKAFTCSYHGWAYDTAGNLVNVPYEAESFACLNKKEWSPLKARVETYKGLIFANWDENAVDLDTYLGEAKFYMDHMLDRTEAGTEAIPGVQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGILAGLPEEMADLAPPTVGKQYRASWGGHGSGFYVGDPNLMLAIMGPKVTSYWTEGPASEKAAERLGSVERGSKLMVEHMTVFPTCSFLPGINTVRTWHPRGPNEVEVWAFTVVDADAPDDIKEEFRRQTLRTFSAGGVFEQDDGENWVEIQHILRGHKARSRPFNAEMSMDQTVDNDPVYPGRISNNVYSEEAARGLYAHWLRMMTS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structures of the multicomponent Rieske non-heme iron toluene 2,3-dioxygenase enzyme system
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Pseudomonas putida
molecule keywords Benzene 1,2-dioxygenase subunit alpha
total genus 147
structure length 424
sequence length 426
ec nomenclature ec 1.14.12.11: Toluene dioxygenase.
pdb deposition date 2008-09-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3en1A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 3en1A01
1EG9A 1ULJA 1O7HA 4H13D 4NBDA 1O7PA 3H1HE 4NBHA 2HMNA 3H1IE 4HM0A 2E4QA 5KLIC 2D2CD 2JZAA 3GOBA 4HM4A 2QJKC 4OGQD 5KLVE 4NBGA 3CX5E 3H1KE 4NB9A 4H0LD 3VMGA 1G8JB 1EZVE 3AZCA 3L75E 4HJLA 4HM5A 4QDFA 4NBDD 4EMJB 4NBBA 1BE3E 1Z02A 4NBHD 1NYKA 4PV1D 2FYNC 1UUVA 5KKZC 1FQTA 3H1JE 3EN1A 2DE7A 2HMMA 2YFIA 3H1LE 1VF5D 2E74D 2DE5A 1RIEA 4NBGD 1NU1E 4U3FE 1O7MA 1RFSA 4NB9D 1L0NE 3VMGD 5HL4A 3L73E 4NBBD 1SQXE 2BMOA 3L74E 1PPJE 2NUKA 2XSHA 1Q90C 1WQLA 1SQBE 2Q3WA 2QJPC 2DE7D 2GBXA 3GL2A 2DE5D 3L72E 1BCCE 3EQQA 4NBFA 1PP9E 1NTME 4QURA 3GB4A 1NTKE 1G8KB 4P1BH 4QDCA 3CXHE 2HMLA 1O7WA 2DE6A 2E75D 1UUWA 2B24A 4NBCA 2YFJA 2BCCE 1L0LE 3L70E 4QUPA 4QUQA 2ZT9D 4NBFD 2HMOA 3VMIA 3GTSA 3GZYA 1JM1A 1O7GA 1NDOA 3L71E 3GCFA 3GKQA 2NVEA 2QJYC 2YFLA 1Z03A 3BCCE 2DE6D 3VMHA 4NBCD 4HM3A 3GCEA 2I7FA 4HM7A 2XR8A 1KB9E 1SQPE 2B1XA 1NTZE 4HM2A 4AAYB 4AIVA 5AEUA 1SQQE 3C0DA 3GZXA 4HM6A 3VMID 2HMKA 2E76D 2NUMA 3GL0A 3VCAA 5AEWA 4QDDA 1SQVE 3FOUA 3VMHD 1SJGA 1Z01A 2IBZE 3VCPA 3N0QA 2NWFA 2YVJB 4NB8A 2CKFA 2BMQA 2JO6A 2ZYLA 3D89A 4HM1A 2YIUC 2QPZA 4QDFB 3GKEA 4NBEA 4NBAA 2GBWA 4HKVA 1O7NA 2BMRA 4QCKA 3TGUE 4NB8D 1P84E 3DQYA 1KYOE 2HMJA 2FYUE 2A06E 2NVFA 4P1CH 5BOKA 2NVGA 1ULIA 3GTEA 4H44D 1WW9A 1VCKA 2E4PA 1VM9A 2XSOA 4HM8A 2XRXA 4PD4E 1ZRTE 5CXMA 4NBED 4NBAD 3CWBE
chains in the Genus database with same CATH superfamily
1EG9A 1ULJA 1O7HA 4H13D 4NBDA 1O7PA 3H1HE 4NBHA 2HMNA 3H1IE 4HM0A 2E4QA 5KLIC 2D2CD 2JZAA 3GOBA 4HM4A 2QJKC 4OGQD 5KLVE 4NBGA 3CX5E 3H1KE 4NB9A 4H0LD 3VMGA 1G8JB 1EZVE 3AZCA 3L75E 4HJLA 4HM5A 4QDFA 4NBDD 4EMJB 4NBBA 1BE3E 1Z02A 4NBHD 1NYKA 4PV1D 2FYNC 1UUVA 5KKZC 1FQTA 3H1JE 3EN1A 2DE7A 2HMMA 2YFIA 3H1LE 1VF5D 2E74D 2DE5A 1RIEA 4NBGD 1NU1E 4U3FE 1O7MA 1RFSA 4NB9D 1L0NE 3VMGD 5HL4A 3L73E 4NBBD 1SQXE 2BMOA 3L74E 1PPJE 2NUKA 2XSHA 1Q90C 1WQLA 1SQBE 2Q3WA 2QJPC 2DE7D 2GBXA 3GL2A 2DE5D 3L72E 1BCCE 3EQQA 4NBFA 1PP9E 1NTME 4QURA 3GB4A 1NTKE 1G8KB 4P1BH 4QDCA 3CXHE 2HMLA 1O7WA 2DE6A 2E75D 1UUWA 2B24A 4NBCA 2YFJA 2BCCE 1L0LE 3L70E 4QUPA 4QUQA 2ZT9D 4NBFD 2HMOA 3VMIA 3GTSA 3GZYA 1JM1A 1O7GA 1NDOA 3L71E 3GCFA 3GKQA 2NVEA 2QJYC 2YFLA 1Z03A 3BCCE 2DE6D 3VMHA 4NBCD 4HM3A 3GCEA 2I7FA 4HM7A 2XR8A 1KB9E 1SQPE 2B1XA 1NTZE 4HM2A 4AAYB 4AIVA 5AEUA 1SQQE 3C0DA 3GZXA 4HM6A 3VMID 2HMKA 2E76D 2NUMA 3GL0A 3VCAA 5AEWA 4QDDA 1SQVE 3FOUA 3VMHD 1SJGA 1Z01A 2IBZE 3VCPA 3N0QA 2NWFA 2YVJB 4NB8A 2CKFA 2BMQA 2JO6A 2ZYLA 3D89A 4HM1A 2YIUC 2QPZA 4QDFB 3GKEA 4NBEA 4NBAA 2GBWA 4HKVA 1O7NA 2BMRA 4QCKA 3TGUE 4NB8D 1P84E 3DQYA 1KYOE 2HMJA 2FYUE 2A06E 2NVFA 4P1CH 5BOKA 2NVGA 1ULIA 3GTEA 4H44D 1WW9A 1VCKA 2E4PA 1VM9A 2XSOA 4HM8A 2XRXA 4PD4E 1ZRTE 5CXMA 4NBED 4NBAD 3CWBE
chains in the Genus database with same CATH topology
1EG9A 1ULJA 1O7HA 4H13D 4NBDA 1O7PA 3H1HE 4NBHA 2HMNA 3H1IE 4HM0A 2E4QA 5KLIC 2D2CD 2JZAA 3GOBA 4HM4A 2QJKC 4OGQD 5KLVE 4NBGA 3CX5E 3H1KE 4NB9A 4H0LD 3VMGA 1G8JB 1EZVE 3AZCA 3L75E 4HJLA 4HM5A 4QDFA 4NBDD 4EMJB 4NBBA 1BE3E 1Z02A 4NBHD 1NYKA 4PV1D 2FYNC 1UUVA 5KKZC 1FQTA 3H1JE 3EN1A 2DE7A 2HMMA 2YFIA 3H1LE 1VF5D 2E74D 2DE5A 1RIEA 4NBGD 1NU1E 4U3FE 1O7MA 1RFSA 4NB9D 1L0NE 3VMGD 5HL4A 3L73E 4NBBD 1SQXE 2BMOA 3L74E 1PPJE 2NUKA 2XSHA 1Q90C 1WQLA 1SQBE 2Q3WA 2QJPC 2DE7D 2GBXA 3GL2A 2DE5D 3L72E 1BCCE 3EQQA 4NBFA 1PP9E 1NTME 4QURA 3GB4A 1NTKE 1G8KB 4P1BH 4QDCA 3CXHE 2HMLA 1O7WA 2DE6A 2E75D 1UUWA 2B24A 4NBCA 2YFJA 2BCCE 1L0LE 3L70E 4QUPA 4QUQA 2ZT9D 4NBFD 2HMOA 3VMIA 3GTSA 3GZYA 1JM1A 1O7GA 1NDOA 3L71E 3GCFA 3GKQA 2NVEA 2QJYC 2YFLA 1Z03A 3BCCE 2DE6D 3VMHA 4NBCD 4HM3A 3GCEA 2I7FA 4HM7A 2XR8A 1KB9E 1SQPE 2B1XA 1NTZE 4HM2A 4AAYB 4AIVA 5AEUA 1SQQE 3C0DA 3GZXA 4HM6A 3VMID 2HMKA 2E76D 2NUMA 3GL0A 3VCAA 5AEWA 4QDDA 1SQVE 3FOUA 3VMHD 1SJGA 1Z01A 2IBZE 3VCPA 3N0QA 2NWFA 2YVJB 4NB8A 2CKFA 2BMQA 2JO6A 2ZYLA 3D89A 4HM1A 2YIUC 2QPZA 4QDFB 3GKEA 4NBEA 4NBAA 2GBWA 4HKVA 1O7NA 2BMRA 4QCKA 3TGUE 4NB8D 1P84E 3DQYA 1KYOE 2HMJA 2FYUE 2A06E 2NVFA 4P1CH 5BOKA 2NVGA 1ULIA 3GTEA 4H44D 1WW9A 1VCKA 2E4PA 1VM9A 2XSOA 4HM8A 2XRXA 4PD4E 1ZRTE 5CXMA 4NBED 4NBAD 3CWBE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EG9 A;  1ULJ A;  1O7H A;  4H13 D;  4NBD A;  1O7P A;  3H1H E;  4NBH A;  2HMN A;  3H1I E;  4HM0 A;  2E4Q A;  5KLI C;  2D2C D;  2JZA A;  3GOB A;  4HM4 A;  2QJK C;  4OGQ D;  5KLV E;  4NBG A;  3CX5 E;  3H1K E;  4NB9 A;  4H0L D;  3VMG A;  1G8J B;  1EZV E;  3AZC A;  3L75 E;  4HJL A;  4HM5 A;  4QDF A;  4NBD D;  4EMJ B;  4NBB A;  1BE3 E;  1Z02 A;  4NBH D;  1NYK A;  4PV1 D;  2FYN C;  1UUV A;  5KKZ C;  1FQT A;  3H1J E;  3EN1 A;  2DE7 A;  2HMM A;  2YFI A;  3H1L E;  1VF5 D;  2E74 D;  2DE5 A;  1RIE A;  4NBG D;  1NU1 E;  4U3F E;  1O7M A;  1RFS A;  4NB9 D;  1L0N E;  3VMG D;  5HL4 A;  3L73 E;  4NBB D;  1SQX E;  2BMO A;  3L74 E;  1PPJ E;  2NUK A;  2XSH A;  1Q90 C;  1WQL A;  1SQB E;  2Q3W A;  2QJP C;  2DE7 D;  2GBX A;  3GL2 A;  2DE5 D;  3L72 E;  1BCC E;  3EQQ A;  4NBF A;  1PP9 E;  1NTM E;  4QUR A;  3GB4 A;  1NTK E;  1G8K B;  4P1B H;  4QDC A;  3CXH E;  2HML A;  1O7W A;  2DE6 A;  2E75 D;  1UUW A;  2B24 A;  4NBC A;  2YFJ A;  2BCC E;  1L0L E;  3L70 E;  4QUP A;  4QUQ A;  2ZT9 D;  4NBF D;  2HMO A;  3VMI A;  3GTS A;  3GZY A;  1JM1 A;  1O7G A;  1NDO A;  3L71 E;  3GCF A;  3GKQ A;  2NVE A;  2QJY C;  2YFL A;  1Z03 A;  3BCC E;  2DE6 D;  3VMH A;  4NBC D;  4HM3 A;  3GCE A;  2I7F A;  4HM7 A;  2XR8 A;  1KB9 E;  1SQP E;  2B1X A;  1NTZ E;  4HM2 A;  4AAY B;  4AIV A;  5AEU A;  1SQQ E;  3C0D A;  3GZX A;  4HM6 A;  3VMI D;  2HMK A;  2E76 D;  2NUM A;  3GL0 A;  3VCA A;  5AEW A;  4QDD A;  1SQV E;  3FOU A;  3VMH D;  1SJG A;  1Z01 A;  2IBZ E;  3VCP A;  3N0Q A;  2NWF A;  2YVJ B;  4NB8 A;  2CKF A;  2BMQ A;  2JO6 A;  2ZYL A;  3D89 A;  4HM1 A;  2YIU C;  2QPZ A;  4QDF B;  3GKE A;  4NBE A;  4NBA A;  2GBW A;  4HKV A;  1O7N A;  2BMR A;  4QCK A;  3TGU E;  4NB8 D;  1P84 E;  3DQY A;  1KYO E;  2HMJ A;  2FYU E;  2A06 E;  2NVF A;  4P1C H;  5BOK A;  2NVG A;  1ULI A;  3GTE A;  4H44 D;  1WW9 A;  1VCK A;  2E4P A;  1VM9 A;  2XSO A;  4HM8 A;  2XRX A;  4PD4 E;  1ZRT E;  5CXM A;  4NBE D;  4NBA D;  3CWB E; 
#chains in the Genus database with same CATH topology
 1EG9 A;  1ULJ A;  1O7H A;  4H13 D;  4NBD A;  1O7P A;  3H1H E;  4NBH A;  2HMN A;  3H1I E;  4HM0 A;  2E4Q A;  5KLI C;  2D2C D;  2JZA A;  3GOB A;  4HM4 A;  2QJK C;  4OGQ D;  5KLV E;  4NBG A;  3CX5 E;  3H1K E;  4NB9 A;  4H0L D;  3VMG A;  1G8J B;  1EZV E;  3AZC A;  3L75 E;  4HJL A;  4HM5 A;  4QDF A;  4NBD D;  4EMJ B;  4NBB A;  1BE3 E;  1Z02 A;  4NBH D;  1NYK A;  4PV1 D;  2FYN C;  1UUV A;  5KKZ C;  1FQT A;  3H1J E;  3EN1 A;  2DE7 A;  2HMM A;  2YFI A;  3H1L E;  1VF5 D;  2E74 D;  2DE5 A;  1RIE A;  4NBG D;  1NU1 E;  4U3F E;  1O7M A;  1RFS A;  4NB9 D;  1L0N E;  3VMG D;  5HL4 A;  3L73 E;  4NBB D;  1SQX E;  2BMO A;  3L74 E;  1PPJ E;  2NUK A;  2XSH A;  1Q90 C;  1WQL A;  1SQB E;  2Q3W A;  2QJP C;  2DE7 D;  2GBX A;  3GL2 A;  2DE5 D;  3L72 E;  1BCC E;  3EQQ A;  4NBF A;  1PP9 E;  1NTM E;  4QUR A;  3GB4 A;  1NTK E;  1G8K B;  4P1B H;  4QDC A;  3CXH E;  2HML A;  1O7W A;  2DE6 A;  2E75 D;  1UUW A;  2B24 A;  4NBC A;  2YFJ A;  2BCC E;  1L0L E;  3L70 E;  4QUP A;  4QUQ A;  2ZT9 D;  4NBF D;  2HMO A;  3VMI A;  3GTS A;  3GZY A;  1JM1 A;  1O7G A;  1NDO A;  3L71 E;  3GCF A;  3GKQ A;  2NVE A;  2QJY C;  2YFL A;  1Z03 A;  3BCC E;  2DE6 D;  3VMH A;  4NBC D;  4HM3 A;  3GCE A;  2I7F A;  4HM7 A;  2XR8 A;  1KB9 E;  1SQP E;  2B1X A;  1NTZ E;  4HM2 A;  4AAY B;  4AIV A;  5AEU A;  1SQQ E;  3C0D A;  3GZX A;  4HM6 A;  3VMI D;  2HMK A;  2E76 D;  2NUM A;  3GL0 A;  3VCA A;  5AEW A;  4QDD A;  1SQV E;  3FOU A;  3VMH D;  1SJG A;  1Z01 A;  2IBZ E;  3VCP A;  3N0Q A;  2NWF A;  2YVJ B;  4NB8 A;  2CKF A;  2BMQ A;  2JO6 A;  2ZYL A;  3D89 A;  4HM1 A;  2YIU C;  2QPZ A;  4QDF B;  3GKE A;  4NBE A;  4NBA A;  2GBW A;  4HKV A;  1O7N A;  2BMR A;  4QCK A;  3TGU E;  4NB8 D;  1P84 E;  3DQY A;  1KYO E;  2HMJ A;  2FYU E;  2A06 E;  2NVF A;  4P1C H;  5BOK A;  2NVG A;  1ULI A;  3GTE A;  4H44 D;  1WW9 A;  1VCK A;  2E4P A;  1VM9 A;  2XSO A;  4HM8 A;  2XRX A;  4PD4 E;  1ZRT E;  5CXM A;  4NBE D;  4NBA D;  3CWB E; 
#chains in the Genus database with same CATH homology
 1EG9 A;  1ULJ A;  1O7H A;  4H13 D;  4NBD A;  1O7P A;  3H1H E;  4NBH A;  2HMN A;  3H1I E;  4HM0 A;  2E4Q A;  5KLI C;  2D2C D;  2JZA A;  3GOB A;  4HM4 A;  2QJK C;  4OGQ D;  5KLV E;  4NBG A;  3CX5 E;  3H1K E;  4NB9 A;  4H0L D;  3VMG A;  1G8J B;  1EZV E;  3AZC A;  3L75 E;  4HJL A;  4HM5 A;  4QDF A;  4NBD D;  4EMJ B;  4NBB A;  1BE3 E;  1Z02 A;  4NBH D;  1NYK A;  4PV1 D;  2FYN C;  1UUV A;  5KKZ C;  1FQT A;  3H1J E;  3EN1 A;  2DE7 A;  2HMM A;  2YFI A;  3H1L E;  1VF5 D;  2E74 D;  2DE5 A;  1RIE A;  4NBG D;  1NU1 E;  4U3F E;  1O7M A;  1RFS A;  4NB9 D;  1L0N E;  3VMG D;  5HL4 A;  3L73 E;  4NBB D;  1SQX E;  2BMO A;  3L74 E;  1PPJ E;  2NUK A;  2XSH A;  1Q90 C;  1WQL A;  1SQB E;  2Q3W A;  2QJP C;  2DE7 D;  2GBX A;  3GL2 A;  2DE5 D;  3L72 E;  1BCC E;  3EQQ A;  4NBF A;  1PP9 E;  1NTM E;  4QUR A;  3GB4 A;  1NTK E;  1G8K B;  4P1B H;  4QDC A;  3CXH E;  2HML A;  1O7W A;  2DE6 A;  2E75 D;  1UUW A;  2B24 A;  4NBC A;  2YFJ A;  2BCC E;  1L0L E;  3L70 E;  4QUP A;  4QUQ A;  2ZT9 D;  4NBF D;  2HMO A;  3VMI A;  3GTS A;  3GZY A;  1JM1 A;  1O7G A;  1NDO A;  3L71 E;  3GCF A;  3GKQ A;  2NVE A;  2QJY C;  2YFL A;  1Z03 A;  3BCC E;  2DE6 D;  3VMH A;  4NBC D;  4HM3 A;  3GCE A;  2I7F A;  4HM7 A;  2XR8 A;  1KB9 E;  1SQP E;  2B1X A;  1NTZ E;  4HM2 A;  4AAY B;  4AIV A;  5AEU A;  1SQQ E;  3C0D A;  3GZX A;  4HM6 A;  3VMI D;  2HMK A;  2E76 D;  2NUM A;  3GL0 A;  3VCA A;  5AEW A;  4QDD A;  1SQV E;  3FOU A;  3VMH D;  1SJG A;  1Z01 A;  2IBZ E;  3VCP A;  3N0Q A;  2NWF A;  2YVJ B;  4NB8 A;  2CKF A;  2BMQ A;  2JO6 A;  2ZYL A;  3D89 A;  4HM1 A;  2YIU C;  2QPZ A;  4QDF B;  3GKE A;  4NBE A;  4NBA A;  2GBW A;  4HKV A;  1O7N A;  2BMR A;  4QCK A;  3TGU E;  4NB8 D;  1P84 E;  3DQY A;  1KYO E;  2HMJ A;  2FYU E;  2A06 E;  2NVF A;  4P1C H;  5BOK A;  2NVG A;  1ULI A;  3GTE A;  4H44 D;  1WW9 A;  1VCK A;  2E4P A;  1VM9 A;  2XSO A;  4HM8 A;  2XRX A;  4PD4 E;  1ZRT E;  5CXM A;  4NBE D;  4NBA D;  3CWB E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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