3EN1A

Crystal structure of toluene 2,3-dioxygenase
Total Genus 147
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
147
sequence length
426
structure length
424
Chain Sequence
b'WNTSEIEALFDEHAGRIDPRIYTDEDLYQLELERVFARSWLLLGHETQIRKPGDYITTYMGEDPVVVVRQKDASIAVFLNQCRHRGMRICRADAGNAKAFTCSYHGWAYDTAGNLVNVPYEAESFACLNKKEWSPLKARVETYKGLIFANWDENAVDLDTYLGEAKFYMDHMLDRTEAGTEAIPGVQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGILAGLPEEMADLAPPTVGKQYRASWGGHGSGFYVGDPNLMLAIMGPKVTSYWTEGPASEKAAERLGSVERGSKLMVEHMTVFPTCSFLPGINTVRTWHPRGPNEVEVWAFTVVDADAPDDIKEEFRRQTLRTFSAGGVFEQDDGENWVEIQHILRGHKARSRPFNAEMSMDQTVDNDPVYPGRISNNVYSEEAARGLYAHWLRMMTS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Benzene 1,2-dioxygenase subunit alpha
publication title Structures of the multicomponent Rieske non-heme iron toluene 2,3-dioxygenase enzyme system
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Oxidoreductase
total genus 147
structure length 424
sequence length 426
ec nomenclature ec 1.14.12.11: Toluene dioxygenase.
pdb deposition date 2008-09-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3en1A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 3en1A01
2NVFA 4PV1D 2ZT9D 4QCKA 1BCCE 4P1BH 4OGQD 3H1LE 3VMGA 2GBXA 3GCFA 2NUKA 2QPZA 1JM1A 2E75D 1SQXE 2FYNC 3L74E 4NBFA 3GL2A 4NBCD 4QDFA 2YFJA 3GZXA 4H13D 3GKQA 1O7GA 1G8JB 1UUVA 2NVEA 3L73E 2DE6D 1NTZE 4HM0A 1G8KB 3GTEA 5CXMA 4NBAD 2IBZE 3L72E 4QURA 4NBHA 5AEWA 2XSOA 1SQQE 1VF5D 2DE5A 3L71E 2XR8A 1SJGA 5KLVE 1KYOE 4QUQA 2BCCE 1KB9E 3H1IE 2YFLA 2HMLA 3VMHD 2E4PA 4QDCA 1ULIA 4HM8A 1L0LE 3DQYA 4HM7A 3VMGD 2BMQA 4EMJB 2HMKA 4NB9A 2QJYC 3N0QA 1WQLA 4AAYB 1O7NA 4NBFD 2A06E 2BMOA 4NB8A 1Z03A 1ZRTE 2XSHA 4QUPA 5BOKA 1VM9A 5KKZC 1WW9A 4NBBA 2QJKC 4QDDA 3AZCA 3EQQA 1NDOA 2JZAA 2I7FA 3TGUE 4NBHD 1SQVE 2DE5D 4HKVA 2B24A 4HM4A 3GZYA 1Z02A 2YFIA 4H44D 2HMNA 3GTSA 1SQBE 1RFSA 2B1XA 3FOUA 1UUWA 1EG9A 1O7MA 1L0NE 4NBEA 1ULJA 1Q90C 1O7PA 3CXHE 1NYKA 2GBWA 2HMMA 3GL0A 3VCPA 4NBED 2HMJA 2XRXA 3L75E 2Q3WA 1NU1E 4HM1A 1P84E 1FQTA 3EN1A 4NB9D 3GOBA 1Z01A 1SQPE 4NBGA 4NB8D 2DE7A 4PD4E 4NBGD 2E4QA 4HM5A 3GB4A 4HJLA 2HMOA 4NBBD 2FYUE 2ZYLA 2NVGA 1NTME 2YIUC 2YVJB 3GKEA 4P1CH 1PP9E 3BCCE 4HM6A 4U3FE 3C0DA 3H1HE 2E76D 2NUMA 4HM3A 2QJPC 3H1JE 1O7HA 1BE3E 2D2CD 4HM2A 4NBCA 1RIEA 4QDFB 5AEUA 3VCAA 1NTKE 2JO6A 2DE6A 4NBDA 3GCEA 1VCKA 4NBAA 3D89A 3L70E 2CKFA 3CX5E 4NBDD 3VMIA 3CWBE 4H0LD 2BMRA 1PPJE 3VMID 4AIVA 2E74D 5HL4A 1O7WA 3VMHA 1EZVE 2DE7D 3H1KE 5KLIC 2NWFA
chains in the Genus database with same CATH superfamily
2NVFA 4PV1D 2ZT9D 4QCKA 1BCCE 4P1BH 4OGQD 3H1LE 3VMGA 2GBXA 3GCFA 2NUKA 2QPZA 1JM1A 2E75D 1SQXE 2FYNC 3L74E 4NBFA 3GL2A 4NBCD 4QDFA 2YFJA 3GZXA 4H13D 3GKQA 1O7GA 1G8JB 1UUVA 2NVEA 3L73E 2DE6D 1NTZE 4HM0A 1G8KB 3GTEA 5CXMA 4NBAD 2IBZE 3L72E 4QURA 4NBHA 5AEWA 2XSOA 1SQQE 1VF5D 2DE5A 3L71E 2XR8A 1SJGA 5KLVE 1KYOE 4QUQA 2BCCE 1KB9E 3H1IE 2YFLA 2HMLA 3VMHD 2E4PA 4QDCA 1ULIA 4HM8A 1L0LE 3DQYA 4HM7A 3VMGD 2BMQA 4EMJB 2HMKA 4NB9A 2QJYC 3N0QA 1WQLA 4AAYB 1O7NA 4NBFD 2A06E 2BMOA 4NB8A 1Z03A 1ZRTE 2XSHA 4QUPA 5BOKA 1VM9A 5KKZC 1WW9A 4NBBA 2QJKC 4QDDA 3AZCA 3EQQA 1NDOA 2JZAA 2I7FA 3TGUE 4NBHD 1SQVE 2DE5D 4HKVA 2B24A 4HM4A 3GZYA 1Z02A 2YFIA 4H44D 2HMNA 3GTSA 1SQBE 1RFSA 2B1XA 3FOUA 1UUWA 1EG9A 1O7MA 1L0NE 4NBEA 1ULJA 1Q90C 1O7PA 3CXHE 1NYKA 2GBWA 2HMMA 3GL0A 3VCPA 4NBED 2HMJA 2XRXA 3L75E 2Q3WA 1NU1E 4HM1A 1P84E 1FQTA 3EN1A 4NB9D 3GOBA 1Z01A 1SQPE 4NBGA 4NB8D 2DE7A 4PD4E 4NBGD 2E4QA 4HM5A 3GB4A 4HJLA 2HMOA 4NBBD 2FYUE 2ZYLA 2NVGA 1NTME 2YIUC 2YVJB 3GKEA 4P1CH 1PP9E 3BCCE 4HM6A 4U3FE 3C0DA 3H1HE 2E76D 2NUMA 4HM3A 2QJPC 3H1JE 1O7HA 1BE3E 2D2CD 4HM2A 4NBCA 1RIEA 4QDFB 5AEUA 3VCAA 1NTKE 2JO6A 2DE6A 4NBDA 3GCEA 1VCKA 4NBAA 3D89A 3L70E 2CKFA 3CX5E 4NBDD 3VMIA 3CWBE 4H0LD 2BMRA 1PPJE 3VMID 4AIVA 2E74D 5HL4A 1O7WA 3VMHA 1EZVE 2DE7D 3H1KE 5KLIC 2NWFA
chains in the Genus database with same CATH topology
2NVFA 4PV1D 2ZT9D 4QCKA 1BCCE 4P1BH 4OGQD 3H1LE 3VMGA 2GBXA 3GCFA 2NUKA 2QPZA 1JM1A 2E75D 1SQXE 2FYNC 3L74E 4NBFA 3GL2A 4NBCD 4QDFA 2YFJA 3GZXA 4H13D 3GKQA 1O7GA 1G8JB 1UUVA 2NVEA 3L73E 2DE6D 1NTZE 4HM0A 1G8KB 3GTEA 5CXMA 4NBAD 2IBZE 3L72E 4QURA 4NBHA 5AEWA 2XSOA 1SQQE 1VF5D 2DE5A 3L71E 2XR8A 1SJGA 5KLVE 1KYOE 4QUQA 2BCCE 1KB9E 3H1IE 2YFLA 2HMLA 3VMHD 2E4PA 4QDCA 1ULIA 4HM8A 1L0LE 3DQYA 4HM7A 3VMGD 2BMQA 4EMJB 2HMKA 4NB9A 2QJYC 3N0QA 1WQLA 4AAYB 1O7NA 4NBFD 2A06E 2BMOA 4NB8A 1Z03A 1ZRTE 2XSHA 4QUPA 5BOKA 1VM9A 5KKZC 1WW9A 4NBBA 2QJKC 4QDDA 3AZCA 3EQQA 1NDOA 2JZAA 2I7FA 3TGUE 4NBHD 1SQVE 2DE5D 4HKVA 2B24A 4HM4A 3GZYA 1Z02A 2YFIA 4H44D 2HMNA 3GTSA 1SQBE 1RFSA 2B1XA 3FOUA 1UUWA 1EG9A 1O7MA 1L0NE 4NBEA 1ULJA 1Q90C 1O7PA 3CXHE 1NYKA 2GBWA 2HMMA 3GL0A 3VCPA 4NBED 2HMJA 2XRXA 3L75E 2Q3WA 1NU1E 4HM1A 1P84E 1FQTA 3EN1A 4NB9D 3GOBA 1Z01A 1SQPE 4NBGA 4NB8D 2DE7A 4PD4E 4NBGD 2E4QA 4HM5A 3GB4A 4HJLA 2HMOA 4NBBD 2FYUE 2ZYLA 2NVGA 1NTME 2YIUC 2YVJB 3GKEA 4P1CH 1PP9E 3BCCE 4HM6A 4U3FE 3C0DA 3H1HE 2E76D 2NUMA 4HM3A 2QJPC 3H1JE 1O7HA 1BE3E 2D2CD 4HM2A 4NBCA 1RIEA 4QDFB 5AEUA 3VCAA 1NTKE 2JO6A 2DE6A 4NBDA 3GCEA 1VCKA 4NBAA 3D89A 3L70E 2CKFA 3CX5E 4NBDD 3VMIA 3CWBE 4H0LD 2BMRA 1PPJE 3VMID 4AIVA 2E74D 5HL4A 1O7WA 3VMHA 1EZVE 2DE7D 3H1KE 5KLIC 2NWFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NVF A;  4PV1 D;  2ZT9 D;  4QCK A;  1BCC E;  4P1B H;  4OGQ D;  3H1L E;  3VMG A;  2GBX A;  3GCF A;  2NUK A;  2QPZ A;  1JM1 A;  2E75 D;  1SQX E;  2FYN C;  3L74 E;  4NBF A;  3GL2 A;  4NBC D;  4QDF A;  2YFJ A;  3GZX A;  4H13 D;  3GKQ A;  1O7G A;  1G8J B;  1UUV A;  2NVE A;  3L73 E;  2DE6 D;  1NTZ E;  4HM0 A;  1G8K B;  3GTE A;  5CXM A;  4NBA D;  2IBZ E;  3L72 E;  4QUR A;  4NBH A;  5AEW A;  2XSO A;  1SQQ E;  1VF5 D;  2DE5 A;  3L71 E;  2XR8 A;  1SJG A;  5KLV E;  1KYO E;  4QUQ A;  2BCC E;  1KB9 E;  3H1I E;  2YFL A;  2HML A;  3VMH D;  2E4P A;  4QDC A;  1ULI A;  4HM8 A;  1L0L E;  3DQY A;  4HM7 A;  3VMG D;  2BMQ A;  4EMJ B;  2HMK A;  4NB9 A;  2QJY C;  3N0Q A;  1WQL A;  4AAY B;  1O7N A;  4NBF D;  2A06 E;  2BMO A;  4NB8 A;  1Z03 A;  1ZRT E;  2XSH A;  4QUP A;  5BOK A;  1VM9 A;  5KKZ C;  1WW9 A;  4NBB A;  2QJK C;  4QDD A;  3AZC A;  3EQQ A;  1NDO A;  2JZA A;  2I7F A;  3TGU E;  4NBH D;  1SQV E;  2DE5 D;  4HKV A;  2B24 A;  4HM4 A;  3GZY A;  1Z02 A;  2YFI A;  4H44 D;  2HMN A;  3GTS A;  1SQB E;  1RFS A;  2B1X A;  3FOU A;  1UUW A;  1EG9 A;  1O7M A;  1L0N E;  4NBE A;  1ULJ A;  1Q90 C;  1O7P A;  3CXH E;  1NYK A;  2GBW A;  2HMM A;  3GL0 A;  3VCP A;  4NBE D;  2HMJ A;  2XRX A;  3L75 E;  2Q3W A;  1NU1 E;  4HM1 A;  1P84 E;  1FQT A;  3EN1 A;  4NB9 D;  3GOB A;  1Z01 A;  1SQP E;  4NBG A;  4NB8 D;  2DE7 A;  4PD4 E;  4NBG D;  2E4Q A;  4HM5 A;  3GB4 A;  4HJL A;  2HMO A;  4NBB D;  2FYU E;  2ZYL A;  2NVG A;  1NTM E;  2YIU C;  2YVJ B;  3GKE A;  4P1C H;  1PP9 E;  3BCC E;  4HM6 A;  4U3F E;  3C0D A;  3H1H E;  2E76 D;  2NUM A;  4HM3 A;  2QJP C;  3H1J E;  1O7H A;  1BE3 E;  2D2C D;  4HM2 A;  4NBC A;  1RIE A;  4QDF B;  5AEU A;  3VCA A;  1NTK E;  2JO6 A;  2DE6 A;  4NBD A;  3GCE A;  1VCK A;  4NBA A;  3D89 A;  3L70 E;  2CKF A;  3CX5 E;  4NBD D;  3VMI A;  3CWB E;  4H0L D;  2BMR A;  1PPJ E;  3VMI D;  4AIV A;  2E74 D;  5HL4 A;  1O7W A;  3VMH A;  1EZV E;  2DE7 D;  3H1K E;  5KLI C;  2NWF A; 
#chains in the Genus database with same CATH topology
 2NVF A;  4PV1 D;  2ZT9 D;  4QCK A;  1BCC E;  4P1B H;  4OGQ D;  3H1L E;  3VMG A;  2GBX A;  3GCF A;  2NUK A;  2QPZ A;  1JM1 A;  2E75 D;  1SQX E;  2FYN C;  3L74 E;  4NBF A;  3GL2 A;  4NBC D;  4QDF A;  2YFJ A;  3GZX A;  4H13 D;  3GKQ A;  1O7G A;  1G8J B;  1UUV A;  2NVE A;  3L73 E;  2DE6 D;  1NTZ E;  4HM0 A;  1G8K B;  3GTE A;  5CXM A;  4NBA D;  2IBZ E;  3L72 E;  4QUR A;  4NBH A;  5AEW A;  2XSO A;  1SQQ E;  1VF5 D;  2DE5 A;  3L71 E;  2XR8 A;  1SJG A;  5KLV E;  1KYO E;  4QUQ A;  2BCC E;  1KB9 E;  3H1I E;  2YFL A;  2HML A;  3VMH D;  2E4P A;  4QDC A;  1ULI A;  4HM8 A;  1L0L E;  3DQY A;  4HM7 A;  3VMG D;  2BMQ A;  4EMJ B;  2HMK A;  4NB9 A;  2QJY C;  3N0Q A;  1WQL A;  4AAY B;  1O7N A;  4NBF D;  2A06 E;  2BMO A;  4NB8 A;  1Z03 A;  1ZRT E;  2XSH A;  4QUP A;  5BOK A;  1VM9 A;  5KKZ C;  1WW9 A;  4NBB A;  2QJK C;  4QDD A;  3AZC A;  3EQQ A;  1NDO A;  2JZA A;  2I7F A;  3TGU E;  4NBH D;  1SQV E;  2DE5 D;  4HKV A;  2B24 A;  4HM4 A;  3GZY A;  1Z02 A;  2YFI A;  4H44 D;  2HMN A;  3GTS A;  1SQB E;  1RFS A;  2B1X A;  3FOU A;  1UUW A;  1EG9 A;  1O7M A;  1L0N E;  4NBE A;  1ULJ A;  1Q90 C;  1O7P A;  3CXH E;  1NYK A;  2GBW A;  2HMM A;  3GL0 A;  3VCP A;  4NBE D;  2HMJ A;  2XRX A;  3L75 E;  2Q3W A;  1NU1 E;  4HM1 A;  1P84 E;  1FQT A;  3EN1 A;  4NB9 D;  3GOB A;  1Z01 A;  1SQP E;  4NBG A;  4NB8 D;  2DE7 A;  4PD4 E;  4NBG D;  2E4Q A;  4HM5 A;  3GB4 A;  4HJL A;  2HMO A;  4NBB D;  2FYU E;  2ZYL A;  2NVG A;  1NTM E;  2YIU C;  2YVJ B;  3GKE A;  4P1C H;  1PP9 E;  3BCC E;  4HM6 A;  4U3F E;  3C0D A;  3H1H E;  2E76 D;  2NUM A;  4HM3 A;  2QJP C;  3H1J E;  1O7H A;  1BE3 E;  2D2C D;  4HM2 A;  4NBC A;  1RIE A;  4QDF B;  5AEU A;  3VCA A;  1NTK E;  2JO6 A;  2DE6 A;  4NBD A;  3GCE A;  1VCK A;  4NBA A;  3D89 A;  3L70 E;  2CKF A;  3CX5 E;  4NBD D;  3VMI A;  3CWB E;  4H0L D;  2BMR A;  1PPJ E;  3VMI D;  4AIV A;  2E74 D;  5HL4 A;  1O7W A;  3VMH A;  1EZV E;  2DE7 D;  3H1K E;  5KLI C;  2NWF A; 
#chains in the Genus database with same CATH homology
 2NVF A;  4PV1 D;  2ZT9 D;  4QCK A;  1BCC E;  4P1B H;  4OGQ D;  3H1L E;  3VMG A;  2GBX A;  3GCF A;  2NUK A;  2QPZ A;  1JM1 A;  2E75 D;  1SQX E;  2FYN C;  3L74 E;  4NBF A;  3GL2 A;  4NBC D;  4QDF A;  2YFJ A;  3GZX A;  4H13 D;  3GKQ A;  1O7G A;  1G8J B;  1UUV A;  2NVE A;  3L73 E;  2DE6 D;  1NTZ E;  4HM0 A;  1G8K B;  3GTE A;  5CXM A;  4NBA D;  2IBZ E;  3L72 E;  4QUR A;  4NBH A;  5AEW A;  2XSO A;  1SQQ E;  1VF5 D;  2DE5 A;  3L71 E;  2XR8 A;  1SJG A;  5KLV E;  1KYO E;  4QUQ A;  2BCC E;  1KB9 E;  3H1I E;  2YFL A;  2HML A;  3VMH D;  2E4P A;  4QDC A;  1ULI A;  4HM8 A;  1L0L E;  3DQY A;  4HM7 A;  3VMG D;  2BMQ A;  4EMJ B;  2HMK A;  4NB9 A;  2QJY C;  3N0Q A;  1WQL A;  4AAY B;  1O7N A;  4NBF D;  2A06 E;  2BMO A;  4NB8 A;  1Z03 A;  1ZRT E;  2XSH A;  4QUP A;  5BOK A;  1VM9 A;  5KKZ C;  1WW9 A;  4NBB A;  2QJK C;  4QDD A;  3AZC A;  3EQQ A;  1NDO A;  2JZA A;  2I7F A;  3TGU E;  4NBH D;  1SQV E;  2DE5 D;  4HKV A;  2B24 A;  4HM4 A;  3GZY A;  1Z02 A;  2YFI A;  4H44 D;  2HMN A;  3GTS A;  1SQB E;  1RFS A;  2B1X A;  3FOU A;  1UUW A;  1EG9 A;  1O7M A;  1L0N E;  4NBE A;  1ULJ A;  1Q90 C;  1O7P A;  3CXH E;  1NYK A;  2GBW A;  2HMM A;  3GL0 A;  3VCP A;  4NBE D;  2HMJ A;  2XRX A;  3L75 E;  2Q3W A;  1NU1 E;  4HM1 A;  1P84 E;  1FQT A;  3EN1 A;  4NB9 D;  3GOB A;  1Z01 A;  1SQP E;  4NBG A;  4NB8 D;  2DE7 A;  4PD4 E;  4NBG D;  2E4Q A;  4HM5 A;  3GB4 A;  4HJL A;  2HMO A;  4NBB D;  2FYU E;  2ZYL A;  2NVG A;  1NTM E;  2YIU C;  2YVJ B;  3GKE A;  4P1C H;  1PP9 E;  3BCC E;  4HM6 A;  4U3F E;  3C0D A;  3H1H E;  2E76 D;  2NUM A;  4HM3 A;  2QJP C;  3H1J E;  1O7H A;  1BE3 E;  2D2C D;  4HM2 A;  4NBC A;  1RIE A;  4QDF B;  5AEU A;  3VCA A;  1NTK E;  2JO6 A;  2DE6 A;  4NBD A;  3GCE A;  1VCK A;  4NBA A;  3D89 A;  3L70 E;  2CKF A;  3CX5 E;  4NBD D;  3VMI A;  3CWB E;  4H0L D;  2BMR A;  1PPJ E;  3VMI D;  4AIV A;  2E74 D;  5HL4 A;  1O7W A;  3VMH A;  1EZV E;  2DE7 D;  3H1K E;  5KLI C;  2NWF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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