1WQLA

Cumene dioxygenase (cuma1a2) from pseudomonas fluorescens ip01
Total Genus 144
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
144
sequence length
441
structure length
436
Chain Sequence
NWSDEEIKALVDEEKGLLDPRIFSDQDLYEIELERVFARSWLLLGHEGHIPKAGDYLTTYMGEDPVIVVRQKDRSIKVFLNQCRHRGMRIERSDFGNAKSFTCTYHGWAYDTAGNLVNVPYEKEAFCDCGFDKADWGPLQARVDTYKGLIFANWDTEAPDLKTYLSDATPYMDVMLDRTEAVTQVITGMQKTVIPCNWKFAAEQFCSDMYHAGTMAHLSGVLSSLPPEMDLSQVKLPSSGNQFRAKWGGHGTGWFNDDFALLQAIMGPKVVDYWTKGPAAERAKERLGKVLPADRMVAQHMTIFPTCSFLPGINTVRTWHPRGPNEIEVWSFIVVDADAPEDIKEEYRRKNIFTFNQGGTYEQDDGENWVEVQRGLRGYKARSRPLCAQMGAGVPNKNNPEFPGKTSYVYSEEAARGFYHHWSRMMSEPSWDTLKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords iron-sulfur protein large subunit of cumene dioxygenase
publication title Crystal Structure of the Terminal Oxygenase Component of Cumene Dioxygenase from Pseudomonas fluorescens IP01
pubmed doi rcsb
source organism Pseudomonas fluorescens
molecule tags Oxidoreductase
total genus 144
structure length 436
sequence length 441
ec nomenclature ec 1.14.12.-:
pdb deposition date 2004-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1wqlA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1wqlA01
1O7HA 4NBBD 1G8KB 3GKEA 4NB8A 1VCKA 4P1CH 4NBCD 4QDDA 1UUWA 3VMGD 2NVGA 2BMQA 2YFJA 2FYUE 2DE5A 3VMHA 2E75D 3GL0A 1Z02A 1RFSA 4QUQA 2HMOA 1EG9A 1BCCE 1VM9A 4NBAD 4QDFA 4NBFA 2NUKA 1KYOE 3VCAA 4HM3A 3L75E 3H1KE 3GZYA 4P1BH 2YFIA 1WW9A 2HMMA 2B1XA 1NDOA 1UUVA 1Z03A 4HM2A 1Q90C 3EQQA 4H13D 4NBCA 2QPZA 4NBDA 2GBXA 5CXMA 3L74E 5AEUA 4NBEA 3H1JE 2IBZE 1SQPE 1NTME 2FYNC 4NB9A 4NBAA 1EZVE 3GTEA 2GBWA 4HM1A 2DE7A 1O7PA 4AAYB 1O7NA 4HM7A 2CKFA 4HKVA 3N0QA 3CXHE 3H1IE 2YIUC 4QCKA 2DE6D 1O7WA 3H1HE 3AZCA 1P84E 2E76D 2HMJA 1O7MA 2BCCE 3GB4A 4QUPA 5AEWA 2XSHA 4AIVA 1RIEA 1L0LE 2YFLA 5HL4A 1WQLA 3GKQA 1NTKE 4NBBA 5KKZC 4PV1D 4H44D 1L0NE 1PPJE 2E74D 3D89A 4EMJB 4HM5A 3VMGA 1VF5D 2XR8A 2B24A 2E4QA 2E4PA 4NBHD 3FOUA 2DE6A 1FQTA 3GOBA 1SQQE 4PD4E 3VMID 4U3FE 2ZYLA 4NB8D 2QJKC 4HM0A 2QJYC 5KLIC 4HM8A 3L70E 4HJLA 3VMIA 2HMKA 2Q3WA 2DE5D 2HMLA 2ZT9D 4NBHA 2BMOA 1ZRTE 3TGUE 2NUMA 3L73E 4QDFB 1ULIA 3VCPA 1NTZE 1Z01A 1G8JB 4QURA 5BOKA 3C0DA 1KB9E 2XRXA 4NBGD 4H0LD 3BCCE 2YVJB 4HM4A 3H1LE 3DQYA 2HMNA 3GCEA 3GL2A 3L72E 3L71E 4NBDD 2BMRA 4NBED 2I7FA 5KLVE 1ULJA 4NB9D 1SQVE 4QDCA 2DE7D 2XSOA 3GCFA 4OGQD 2JZAA 1SQXE 3VMHD 3CX5E 1NYKA 1JM1A 2NVEA 2D2CD 1NU1E 4NBGA 1PP9E 2NVFA 4NBFD 2JO6A 1BE3E 1O7GA 3CWBE 2QJPC 2NWFA 4HM6A 1SJGA 3GZXA 2A06E 3EN1A 1SQBE 3GTSA
chains in the Genus database with same CATH superfamily
1O7HA 4NBBD 1G8KB 3GKEA 4NB8A 1VCKA 4P1CH 4NBCD 4QDDA 1UUWA 3VMGD 2NVGA 2BMQA 2YFJA 2FYUE 2DE5A 3VMHA 2E75D 3GL0A 1Z02A 1RFSA 4QUQA 2HMOA 1EG9A 1BCCE 1VM9A 4NBAD 4QDFA 4NBFA 2NUKA 1KYOE 3VCAA 4HM3A 3L75E 3H1KE 3GZYA 4P1BH 2YFIA 1WW9A 2HMMA 2B1XA 1NDOA 1UUVA 1Z03A 4HM2A 1Q90C 3EQQA 4H13D 4NBCA 2QPZA 4NBDA 2GBXA 5CXMA 3L74E 5AEUA 4NBEA 3H1JE 2IBZE 1SQPE 1NTME 2FYNC 4NB9A 4NBAA 1EZVE 3GTEA 2GBWA 4HM1A 2DE7A 1O7PA 4AAYB 1O7NA 4HM7A 2CKFA 4HKVA 3N0QA 3CXHE 3H1IE 2YIUC 4QCKA 2DE6D 1O7WA 3H1HE 3AZCA 1P84E 2E76D 2HMJA 1O7MA 2BCCE 3GB4A 4QUPA 5AEWA 2XSHA 4AIVA 1RIEA 1L0LE 2YFLA 5HL4A 1WQLA 3GKQA 1NTKE 4NBBA 5KKZC 4PV1D 4H44D 1L0NE 1PPJE 2E74D 3D89A 4EMJB 4HM5A 3VMGA 1VF5D 2XR8A 2B24A 2E4QA 2E4PA 4NBHD 3FOUA 2DE6A 1FQTA 3GOBA 1SQQE 4PD4E 3VMID 4U3FE 2ZYLA 4NB8D 2QJKC 4HM0A 2QJYC 5KLIC 4HM8A 3L70E 4HJLA 3VMIA 2HMKA 2Q3WA 2DE5D 2HMLA 2ZT9D 4NBHA 2BMOA 1ZRTE 3TGUE 2NUMA 3L73E 4QDFB 1ULIA 3VCPA 1NTZE 1Z01A 1G8JB 4QURA 5BOKA 3C0DA 1KB9E 2XRXA 4NBGD 4H0LD 3BCCE 2YVJB 4HM4A 3H1LE 3DQYA 2HMNA 3GCEA 3GL2A 3L72E 3L71E 4NBDD 2BMRA 4NBED 2I7FA 5KLVE 1ULJA 4NB9D 1SQVE 4QDCA 2DE7D 2XSOA 3GCFA 4OGQD 2JZAA 1SQXE 3VMHD 3CX5E 1NYKA 1JM1A 2NVEA 2D2CD 1NU1E 4NBGA 1PP9E 2NVFA 4NBFD 2JO6A 1BE3E 1O7GA 3CWBE 2QJPC 2NWFA 4HM6A 1SJGA 3GZXA 2A06E 3EN1A 1SQBE 3GTSA
chains in the Genus database with same CATH topology
1O7HA 4NBBD 1G8KB 3GKEA 4NB8A 1VCKA 4P1CH 4NBCD 4QDDA 1UUWA 3VMGD 2NVGA 2BMQA 2YFJA 2FYUE 2DE5A 3VMHA 2E75D 3GL0A 1Z02A 1RFSA 4QUQA 2HMOA 1EG9A 1BCCE 1VM9A 4NBAD 4QDFA 4NBFA 2NUKA 1KYOE 3VCAA 4HM3A 3L75E 3H1KE 3GZYA 4P1BH 2YFIA 1WW9A 2HMMA 2B1XA 1NDOA 1UUVA 1Z03A 4HM2A 1Q90C 3EQQA 4H13D 4NBCA 2QPZA 4NBDA 2GBXA 5CXMA 3L74E 5AEUA 4NBEA 3H1JE 2IBZE 1SQPE 1NTME 2FYNC 4NB9A 4NBAA 1EZVE 3GTEA 2GBWA 4HM1A 2DE7A 1O7PA 4AAYB 1O7NA 4HM7A 2CKFA 4HKVA 3N0QA 3CXHE 3H1IE 2YIUC 4QCKA 2DE6D 1O7WA 3H1HE 3AZCA 1P84E 2E76D 2HMJA 1O7MA 2BCCE 3GB4A 4QUPA 5AEWA 2XSHA 4AIVA 1RIEA 1L0LE 2YFLA 5HL4A 1WQLA 3GKQA 1NTKE 4NBBA 5KKZC 4PV1D 4H44D 1L0NE 1PPJE 2E74D 3D89A 4EMJB 4HM5A 3VMGA 1VF5D 2XR8A 2B24A 2E4QA 2E4PA 4NBHD 3FOUA 2DE6A 1FQTA 3GOBA 1SQQE 4PD4E 3VMID 4U3FE 2ZYLA 4NB8D 2QJKC 4HM0A 2QJYC 5KLIC 4HM8A 3L70E 4HJLA 3VMIA 2HMKA 2Q3WA 2DE5D 2HMLA 2ZT9D 4NBHA 2BMOA 1ZRTE 3TGUE 2NUMA 3L73E 4QDFB 1ULIA 3VCPA 1NTZE 1Z01A 1G8JB 4QURA 5BOKA 3C0DA 1KB9E 2XRXA 4NBGD 4H0LD 3BCCE 2YVJB 4HM4A 3H1LE 3DQYA 2HMNA 3GCEA 3GL2A 3L72E 3L71E 4NBDD 2BMRA 4NBED 2I7FA 5KLVE 1ULJA 4NB9D 1SQVE 4QDCA 2DE7D 2XSOA 3GCFA 4OGQD 2JZAA 1SQXE 3VMHD 3CX5E 1NYKA 1JM1A 2NVEA 2D2CD 1NU1E 4NBGA 1PP9E 2NVFA 4NBFD 2JO6A 1BE3E 1O7GA 3CWBE 2QJPC 2NWFA 4HM6A 1SJGA 3GZXA 2A06E 3EN1A 1SQBE 3GTSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O7H A;  4NBB D;  1G8K B;  3GKE A;  4NB8 A;  1VCK A;  4P1C H;  4NBC D;  4QDD A;  1UUW A;  3VMG D;  2NVG A;  2BMQ A;  2YFJ A;  2FYU E;  2DE5 A;  3VMH A;  2E75 D;  3GL0 A;  1Z02 A;  1RFS A;  4QUQ A;  2HMO A;  1EG9 A;  1BCC E;  1VM9 A;  4NBA D;  4QDF A;  4NBF A;  2NUK A;  1KYO E;  3VCA A;  4HM3 A;  3L75 E;  3H1K E;  3GZY A;  4P1B H;  2YFI A;  1WW9 A;  2HMM A;  2B1X A;  1NDO A;  1UUV A;  1Z03 A;  4HM2 A;  1Q90 C;  3EQQ A;  4H13 D;  4NBC A;  2QPZ A;  4NBD A;  2GBX A;  5CXM A;  3L74 E;  5AEU A;  4NBE A;  3H1J E;  2IBZ E;  1SQP E;  1NTM E;  2FYN C;  4NB9 A;  4NBA A;  1EZV E;  3GTE A;  2GBW A;  4HM1 A;  2DE7 A;  1O7P A;  4AAY B;  1O7N A;  4HM7 A;  2CKF A;  4HKV A;  3N0Q A;  3CXH E;  3H1I E;  2YIU C;  4QCK A;  2DE6 D;  1O7W A;  3H1H E;  3AZC A;  1P84 E;  2E76 D;  2HMJ A;  1O7M A;  2BCC E;  3GB4 A;  4QUP A;  5AEW A;  2XSH A;  4AIV A;  1RIE A;  1L0L E;  2YFL A;  5HL4 A;  1WQL A;  3GKQ A;  1NTK E;  4NBB A;  5KKZ C;  4PV1 D;  4H44 D;  1L0N E;  1PPJ E;  2E74 D;  3D89 A;  4EMJ B;  4HM5 A;  3VMG A;  1VF5 D;  2XR8 A;  2B24 A;  2E4Q A;  2E4P A;  4NBH D;  3FOU A;  2DE6 A;  1FQT A;  3GOB A;  1SQQ E;  4PD4 E;  3VMI D;  4U3F E;  2ZYL A;  4NB8 D;  2QJK C;  4HM0 A;  2QJY C;  5KLI C;  4HM8 A;  3L70 E;  4HJL A;  3VMI A;  2HMK A;  2Q3W A;  2DE5 D;  2HML A;  2ZT9 D;  4NBH A;  2BMO A;  1ZRT E;  3TGU E;  2NUM A;  3L73 E;  4QDF B;  1ULI A;  3VCP A;  1NTZ E;  1Z01 A;  1G8J B;  4QUR A;  5BOK A;  3C0D A;  1KB9 E;  2XRX A;  4NBG D;  4H0L D;  3BCC E;  2YVJ B;  4HM4 A;  3H1L E;  3DQY A;  2HMN A;  3GCE A;  3GL2 A;  3L72 E;  3L71 E;  4NBD D;  2BMR A;  4NBE D;  2I7F A;  5KLV E;  1ULJ A;  4NB9 D;  1SQV E;  4QDC A;  2DE7 D;  2XSO A;  3GCF A;  4OGQ D;  2JZA A;  1SQX E;  3VMH D;  3CX5 E;  1NYK A;  1JM1 A;  2NVE A;  2D2C D;  1NU1 E;  4NBG A;  1PP9 E;  2NVF A;  4NBF D;  2JO6 A;  1BE3 E;  1O7G A;  3CWB E;  2QJP C;  2NWF A;  4HM6 A;  1SJG A;  3GZX A;  2A06 E;  3EN1 A;  1SQB E;  3GTS A; 
#chains in the Genus database with same CATH topology
 1O7H A;  4NBB D;  1G8K B;  3GKE A;  4NB8 A;  1VCK A;  4P1C H;  4NBC D;  4QDD A;  1UUW A;  3VMG D;  2NVG A;  2BMQ A;  2YFJ A;  2FYU E;  2DE5 A;  3VMH A;  2E75 D;  3GL0 A;  1Z02 A;  1RFS A;  4QUQ A;  2HMO A;  1EG9 A;  1BCC E;  1VM9 A;  4NBA D;  4QDF A;  4NBF A;  2NUK A;  1KYO E;  3VCA A;  4HM3 A;  3L75 E;  3H1K E;  3GZY A;  4P1B H;  2YFI A;  1WW9 A;  2HMM A;  2B1X A;  1NDO A;  1UUV A;  1Z03 A;  4HM2 A;  1Q90 C;  3EQQ A;  4H13 D;  4NBC A;  2QPZ A;  4NBD A;  2GBX A;  5CXM A;  3L74 E;  5AEU A;  4NBE A;  3H1J E;  2IBZ E;  1SQP E;  1NTM E;  2FYN C;  4NB9 A;  4NBA A;  1EZV E;  3GTE A;  2GBW A;  4HM1 A;  2DE7 A;  1O7P A;  4AAY B;  1O7N A;  4HM7 A;  2CKF A;  4HKV A;  3N0Q A;  3CXH E;  3H1I E;  2YIU C;  4QCK A;  2DE6 D;  1O7W A;  3H1H E;  3AZC A;  1P84 E;  2E76 D;  2HMJ A;  1O7M A;  2BCC E;  3GB4 A;  4QUP A;  5AEW A;  2XSH A;  4AIV A;  1RIE A;  1L0L E;  2YFL A;  5HL4 A;  1WQL A;  3GKQ A;  1NTK E;  4NBB A;  5KKZ C;  4PV1 D;  4H44 D;  1L0N E;  1PPJ E;  2E74 D;  3D89 A;  4EMJ B;  4HM5 A;  3VMG A;  1VF5 D;  2XR8 A;  2B24 A;  2E4Q A;  2E4P A;  4NBH D;  3FOU A;  2DE6 A;  1FQT A;  3GOB A;  1SQQ E;  4PD4 E;  3VMI D;  4U3F E;  2ZYL A;  4NB8 D;  2QJK C;  4HM0 A;  2QJY C;  5KLI C;  4HM8 A;  3L70 E;  4HJL A;  3VMI A;  2HMK A;  2Q3W A;  2DE5 D;  2HML A;  2ZT9 D;  4NBH A;  2BMO A;  1ZRT E;  3TGU E;  2NUM A;  3L73 E;  4QDF B;  1ULI A;  3VCP A;  1NTZ E;  1Z01 A;  1G8J B;  4QUR A;  5BOK A;  3C0D A;  1KB9 E;  2XRX A;  4NBG D;  4H0L D;  3BCC E;  2YVJ B;  4HM4 A;  3H1L E;  3DQY A;  2HMN A;  3GCE A;  3GL2 A;  3L72 E;  3L71 E;  4NBD D;  2BMR A;  4NBE D;  2I7F A;  5KLV E;  1ULJ A;  4NB9 D;  1SQV E;  4QDC A;  2DE7 D;  2XSO A;  3GCF A;  4OGQ D;  2JZA A;  1SQX E;  3VMH D;  3CX5 E;  1NYK A;  1JM1 A;  2NVE A;  2D2C D;  1NU1 E;  4NBG A;  1PP9 E;  2NVF A;  4NBF D;  2JO6 A;  1BE3 E;  1O7G A;  3CWB E;  2QJP C;  2NWF A;  4HM6 A;  1SJG A;  3GZX A;  2A06 E;  3EN1 A;  1SQB E;  3GTS A; 
#chains in the Genus database with same CATH homology
 1O7H A;  4NBB D;  1G8K B;  3GKE A;  4NB8 A;  1VCK A;  4P1C H;  4NBC D;  4QDD A;  1UUW A;  3VMG D;  2NVG A;  2BMQ A;  2YFJ A;  2FYU E;  2DE5 A;  3VMH A;  2E75 D;  3GL0 A;  1Z02 A;  1RFS A;  4QUQ A;  2HMO A;  1EG9 A;  1BCC E;  1VM9 A;  4NBA D;  4QDF A;  4NBF A;  2NUK A;  1KYO E;  3VCA A;  4HM3 A;  3L75 E;  3H1K E;  3GZY A;  4P1B H;  2YFI A;  1WW9 A;  2HMM A;  2B1X A;  1NDO A;  1UUV A;  1Z03 A;  4HM2 A;  1Q90 C;  3EQQ A;  4H13 D;  4NBC A;  2QPZ A;  4NBD A;  2GBX A;  5CXM A;  3L74 E;  5AEU A;  4NBE A;  3H1J E;  2IBZ E;  1SQP E;  1NTM E;  2FYN C;  4NB9 A;  4NBA A;  1EZV E;  3GTE A;  2GBW A;  4HM1 A;  2DE7 A;  1O7P A;  4AAY B;  1O7N A;  4HM7 A;  2CKF A;  4HKV A;  3N0Q A;  3CXH E;  3H1I E;  2YIU C;  4QCK A;  2DE6 D;  1O7W A;  3H1H E;  3AZC A;  1P84 E;  2E76 D;  2HMJ A;  1O7M A;  2BCC E;  3GB4 A;  4QUP A;  5AEW A;  2XSH A;  4AIV A;  1RIE A;  1L0L E;  2YFL A;  5HL4 A;  1WQL A;  3GKQ A;  1NTK E;  4NBB A;  5KKZ C;  4PV1 D;  4H44 D;  1L0N E;  1PPJ E;  2E74 D;  3D89 A;  4EMJ B;  4HM5 A;  3VMG A;  1VF5 D;  2XR8 A;  2B24 A;  2E4Q A;  2E4P A;  4NBH D;  3FOU A;  2DE6 A;  1FQT A;  3GOB A;  1SQQ E;  4PD4 E;  3VMI D;  4U3F E;  2ZYL A;  4NB8 D;  2QJK C;  4HM0 A;  2QJY C;  5KLI C;  4HM8 A;  3L70 E;  4HJL A;  3VMI A;  2HMK A;  2Q3W A;  2DE5 D;  2HML A;  2ZT9 D;  4NBH A;  2BMO A;  1ZRT E;  3TGU E;  2NUM A;  3L73 E;  4QDF B;  1ULI A;  3VCP A;  1NTZ E;  1Z01 A;  1G8J B;  4QUR A;  5BOK A;  3C0D A;  1KB9 E;  2XRX A;  4NBG D;  4H0L D;  3BCC E;  2YVJ B;  4HM4 A;  3H1L E;  3DQY A;  2HMN A;  3GCE A;  3GL2 A;  3L72 E;  3L71 E;  4NBD D;  2BMR A;  4NBE D;  2I7F A;  5KLV E;  1ULJ A;  4NB9 D;  1SQV E;  4QDC A;  2DE7 D;  2XSO A;  3GCF A;  4OGQ D;  2JZA A;  1SQX E;  3VMH D;  3CX5 E;  1NYK A;  1JM1 A;  2NVE A;  2D2C D;  1NU1 E;  4NBG A;  1PP9 E;  2NVF A;  4NBF D;  2JO6 A;  1BE3 E;  1O7G A;  3CWB E;  2QJP C;  2NWF A;  4HM6 A;  1SJG A;  3GZX A;  2A06 E;  3EN1 A;  1SQB E;  3GTS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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