1WQLA

Cumene dioxygenase (cuma1a2) from pseudomonas fluorescens ip01
Total Genus 144
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
144
sequence length
441
structure length
436
Chain Sequence
NWSDEEIKALVDEEKGLLDPRIFSDQDLYEIELERVFARSWLLLGHEGHIPKAGDYLTTYMGEDPVIVVRQKDRSIKVFLNQCRHRGMRIERSDFGNAKSFTCTYHGWAYDTAGNLVNVPYEKEAFCDCGFDKADWGPLQARVDTYKGLIFANWDTEAPDLKTYLSDATPYMDVMLDRTEAVTQVITGMQKTVIPCNWKFAAEQFCSDMYHAGTMAHLSGVLSSLPPEMDLSQVKLPSSGNQFRAKWGGHGTGWFNDDFALLQAIMGPKVVDYWTKGPAAERAKERLGKVLPADRMVAQHMTIFPTCSFLPGINTVRTWHPRGPNEIEVWSFIVVDADAPEDIKEEYRRKNIFTFNQGGTYEQDDGENWVEVQRGLRGYKARSRPLCAQMGAGVPNKNNPEFPGKTSYVYSEEAARGFYHHWSRMMSEPSWDTLKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords iron-sulfur protein large subunit of cumene dioxygenase
publication title Crystal Structure of the Terminal Oxygenase Component of Cumene Dioxygenase from Pseudomonas fluorescens IP01
pubmed doi rcsb
source organism Pseudomonas fluorescens
total genus 144
structure length 436
sequence length 441
ec nomenclature ec 1.14.12.-:
pdb deposition date 2004-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1wqlA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1wqlA01
1L0LE 2QJPC 3L74E 4NBDD 3L71E 1BE3E 4NBEA 3VMHA 4NBGD 2I7FA 1UUVA 1G8KB 1KYOE 2BMOA 3GL2A 3H1KE 4QDDA 3VMID 3N0QA 1SQVE 2HMJA 4NBFA 2HMKA 1Z02A 4NBBA 4NBCA 3FOUA 3GL0A 1Z03A 4NB8D 2BCCE 5KLVE 2DE5A 1BCCE 3H1LE 1Q90C 4HM6A 4H13D 3GTEA 3VMGD 2NWFA 2ZT9D 3GZYA 4PV1D 1SQQE 4QUPA 1O7WA 3GKQA 1O7NA 2Q3WA 2B1XA 4NBDA 1O7PA 4OGQD 4NBGA 1O7HA 4HM8A 1NDOA 1L0NE 1RFSA 1PP9E 1SQPE 5HL4A 2JZAA 1NU1E 3D89A 2BMRA 4P1BH 2HMLA 2NVGA 3CXHE 1ZRTE 4NB8A 2YFLA 2QPZA 4NBHD 5BOKA 1EG9A 4HM4A 1SQBE 1P84E 3EQQA 3VMGA 3L70E 2QJYC 2XR8A 1VM9A 2DE7A 4HKVA 5CXMA 2DE6A 3DQYA 4QDCA 2FYNC 3H1JE 1G8JB 1PPJE 3C0DA 3GTSA 2IBZE 1VCKA 2YIUC 5AEWA 3GOBA 3GCEA 4HM0A 4EMJB 2BMQA 2NVFA 5AEUA 1RIEA 4P1CH 4QURA 4H0LD 2HMMA 3BCCE 3EN1A 3VMIA 2XSOA 1FQTA 4HM3A 4HM7A 4PD4E 4NBHA 3L73E 1NTME 2E4PA 3TGUE 4NBED 4AAYB 2ZYLA 3H1HE 5KLIC 1SQXE 2DE7D 4NBFD 3VCAA 2YFIA 4QUQA 2E4QA 4NBBD 4NBCD 2E74D 3VCPA 2HMNA 1O7MA 2E75D 2E76D 2FYUE 2GBWA 4HJLA 2D2CD 4QCKA 2HMOA 1Z01A 4HM1A 1WW9A 1ULJA 4QDFA 3GB4A 4NBAD 2YVJB 3CWBE 4H44D 4QDFB 2GBXA 2QJKC 4NB9D 3AZCA 1JM1A 2JO6A 1EZVE 2NVEA 4AIVA 4HM5A 3CX5E 1NYKA 2CKFA 3L72E 3VMHD 1NTZE 4U3FE 2XSHA 2NUMA 3L75E 2XRXA 5KKZC 1KB9E 2B24A 3GCFA 1UUWA 3H1IE 2NUKA 3GZXA 4HM2A 2A06E 2YFJA 1O7GA 1ULIA 1WQLA 1NTKE 4NBAA 2DE6D 2DE5D 1VF5D 1SJGA 3GKEA 4NB9A
chains in the Genus database with same CATH superfamily
1L0LE 2QJPC 3L74E 4NBDD 3L71E 1BE3E 4NBEA 3VMHA 4NBGD 2I7FA 1UUVA 1G8KB 1KYOE 2BMOA 3GL2A 3H1KE 4QDDA 3VMID 3N0QA 1SQVE 2HMJA 4NBFA 2HMKA 1Z02A 4NBBA 4NBCA 3FOUA 3GL0A 1Z03A 4NB8D 2BCCE 5KLVE 2DE5A 1BCCE 3H1LE 1Q90C 4HM6A 4H13D 3GTEA 3VMGD 2NWFA 2ZT9D 3GZYA 4PV1D 1SQQE 4QUPA 1O7WA 3GKQA 1O7NA 2Q3WA 2B1XA 4NBDA 1O7PA 4OGQD 4NBGA 1O7HA 4HM8A 1NDOA 1L0NE 1RFSA 1PP9E 1SQPE 5HL4A 2JZAA 1NU1E 3D89A 2BMRA 4P1BH 2HMLA 2NVGA 3CXHE 1ZRTE 4NB8A 2YFLA 2QPZA 4NBHD 5BOKA 1EG9A 4HM4A 1SQBE 1P84E 3EQQA 3VMGA 3L70E 2QJYC 2XR8A 1VM9A 2DE7A 4HKVA 5CXMA 2DE6A 3DQYA 4QDCA 2FYNC 3H1JE 1G8JB 1PPJE 3C0DA 3GTSA 2IBZE 1VCKA 2YIUC 5AEWA 3GOBA 3GCEA 4HM0A 4EMJB 2BMQA 2NVFA 5AEUA 1RIEA 4P1CH 4QURA 4H0LD 2HMMA 3BCCE 3EN1A 3VMIA 2XSOA 1FQTA 4HM3A 4HM7A 4PD4E 4NBHA 3L73E 1NTME 2E4PA 3TGUE 4NBED 4AAYB 2ZYLA 3H1HE 5KLIC 1SQXE 2DE7D 4NBFD 3VCAA 2YFIA 4QUQA 2E4QA 4NBBD 4NBCD 2E74D 3VCPA 2HMNA 1O7MA 2E75D 2E76D 2FYUE 2GBWA 4HJLA 2D2CD 4QCKA 2HMOA 1Z01A 4HM1A 1WW9A 1ULJA 4QDFA 3GB4A 4NBAD 2YVJB 3CWBE 4H44D 4QDFB 2GBXA 2QJKC 4NB9D 3AZCA 1JM1A 2JO6A 1EZVE 2NVEA 4AIVA 4HM5A 3CX5E 1NYKA 2CKFA 3L72E 3VMHD 1NTZE 4U3FE 2XSHA 2NUMA 3L75E 2XRXA 5KKZC 1KB9E 2B24A 3GCFA 1UUWA 3H1IE 2NUKA 3GZXA 4HM2A 2A06E 2YFJA 1O7GA 1ULIA 1WQLA 1NTKE 4NBAA 2DE6D 2DE5D 1VF5D 1SJGA 3GKEA 4NB9A
chains in the Genus database with same CATH topology
1L0LE 2QJPC 3L74E 4NBDD 3L71E 1BE3E 4NBEA 3VMHA 4NBGD 2I7FA 1UUVA 1G8KB 1KYOE 2BMOA 3GL2A 3H1KE 4QDDA 3VMID 3N0QA 1SQVE 2HMJA 4NBFA 2HMKA 1Z02A 4NBBA 4NBCA 3FOUA 3GL0A 1Z03A 4NB8D 2BCCE 5KLVE 2DE5A 1BCCE 3H1LE 1Q90C 4HM6A 4H13D 3GTEA 3VMGD 2NWFA 2ZT9D 3GZYA 4PV1D 1SQQE 4QUPA 1O7WA 3GKQA 1O7NA 2Q3WA 2B1XA 4NBDA 1O7PA 4OGQD 4NBGA 1O7HA 4HM8A 1NDOA 1L0NE 1RFSA 1PP9E 1SQPE 5HL4A 2JZAA 1NU1E 3D89A 2BMRA 4P1BH 2HMLA 2NVGA 3CXHE 1ZRTE 4NB8A 2YFLA 2QPZA 4NBHD 5BOKA 1EG9A 4HM4A 1SQBE 1P84E 3EQQA 3VMGA 3L70E 2QJYC 2XR8A 1VM9A 2DE7A 4HKVA 5CXMA 2DE6A 3DQYA 4QDCA 2FYNC 3H1JE 1G8JB 1PPJE 3C0DA 3GTSA 2IBZE 1VCKA 2YIUC 5AEWA 3GOBA 3GCEA 4HM0A 4EMJB 2BMQA 2NVFA 5AEUA 1RIEA 4P1CH 4QURA 4H0LD 2HMMA 3BCCE 3EN1A 3VMIA 2XSOA 1FQTA 4HM3A 4HM7A 4PD4E 4NBHA 3L73E 1NTME 2E4PA 3TGUE 4NBED 4AAYB 2ZYLA 3H1HE 5KLIC 1SQXE 2DE7D 4NBFD 3VCAA 2YFIA 4QUQA 2E4QA 4NBBD 4NBCD 2E74D 3VCPA 2HMNA 1O7MA 2E75D 2E76D 2FYUE 2GBWA 4HJLA 2D2CD 4QCKA 2HMOA 1Z01A 4HM1A 1WW9A 1ULJA 4QDFA 3GB4A 4NBAD 2YVJB 3CWBE 4H44D 4QDFB 2GBXA 2QJKC 4NB9D 3AZCA 1JM1A 2JO6A 1EZVE 2NVEA 4AIVA 4HM5A 3CX5E 1NYKA 2CKFA 3L72E 3VMHD 1NTZE 4U3FE 2XSHA 2NUMA 3L75E 2XRXA 5KKZC 1KB9E 2B24A 3GCFA 1UUWA 3H1IE 2NUKA 3GZXA 4HM2A 2A06E 2YFJA 1O7GA 1ULIA 1WQLA 1NTKE 4NBAA 2DE6D 2DE5D 1VF5D 1SJGA 3GKEA 4NB9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1L0L E;  2QJP C;  3L74 E;  4NBD D;  3L71 E;  1BE3 E;  4NBE A;  3VMH A;  4NBG D;  2I7F A;  1UUV A;  1G8K B;  1KYO E;  2BMO A;  3GL2 A;  3H1K E;  4QDD A;  3VMI D;  3N0Q A;  1SQV E;  2HMJ A;  4NBF A;  2HMK A;  1Z02 A;  4NBB A;  4NBC A;  3FOU A;  3GL0 A;  1Z03 A;  4NB8 D;  2BCC E;  5KLV E;  2DE5 A;  1BCC E;  3H1L E;  1Q90 C;  4HM6 A;  4H13 D;  3GTE A;  3VMG D;  2NWF A;  2ZT9 D;  3GZY A;  4PV1 D;  1SQQ E;  4QUP A;  1O7W A;  3GKQ A;  1O7N A;  2Q3W A;  2B1X A;  4NBD A;  1O7P A;  4OGQ D;  4NBG A;  1O7H A;  4HM8 A;  1NDO A;  1L0N E;  1RFS A;  1PP9 E;  1SQP E;  5HL4 A;  2JZA A;  1NU1 E;  3D89 A;  2BMR A;  4P1B H;  2HML A;  2NVG A;  3CXH E;  1ZRT E;  4NB8 A;  2YFL A;  2QPZ A;  4NBH D;  5BOK A;  1EG9 A;  4HM4 A;  1SQB E;  1P84 E;  3EQQ A;  3VMG A;  3L70 E;  2QJY C;  2XR8 A;  1VM9 A;  2DE7 A;  4HKV A;  5CXM A;  2DE6 A;  3DQY A;  4QDC A;  2FYN C;  3H1J E;  1G8J B;  1PPJ E;  3C0D A;  3GTS A;  2IBZ E;  1VCK A;  2YIU C;  5AEW A;  3GOB A;  3GCE A;  4HM0 A;  4EMJ B;  2BMQ A;  2NVF A;  5AEU A;  1RIE A;  4P1C H;  4QUR A;  4H0L D;  2HMM A;  3BCC E;  3EN1 A;  3VMI A;  2XSO A;  1FQT A;  4HM3 A;  4HM7 A;  4PD4 E;  4NBH A;  3L73 E;  1NTM E;  2E4P A;  3TGU E;  4NBE D;  4AAY B;  2ZYL A;  3H1H E;  5KLI C;  1SQX E;  2DE7 D;  4NBF D;  3VCA A;  2YFI A;  4QUQ A;  2E4Q A;  4NBB D;  4NBC D;  2E74 D;  3VCP A;  2HMN A;  1O7M A;  2E75 D;  2E76 D;  2FYU E;  2GBW A;  4HJL A;  2D2C D;  4QCK A;  2HMO A;  1Z01 A;  4HM1 A;  1WW9 A;  1ULJ A;  4QDF A;  3GB4 A;  4NBA D;  2YVJ B;  3CWB E;  4H44 D;  4QDF B;  2GBX A;  2QJK C;  4NB9 D;  3AZC A;  1JM1 A;  2JO6 A;  1EZV E;  2NVE A;  4AIV A;  4HM5 A;  3CX5 E;  1NYK A;  2CKF A;  3L72 E;  3VMH D;  1NTZ E;  4U3F E;  2XSH A;  2NUM A;  3L75 E;  2XRX A;  5KKZ C;  1KB9 E;  2B24 A;  3GCF A;  1UUW A;  3H1I E;  2NUK A;  3GZX A;  4HM2 A;  2A06 E;  2YFJ A;  1O7G A;  1ULI A;  1WQL A;  1NTK E;  4NBA A;  2DE6 D;  2DE5 D;  1VF5 D;  1SJG A;  3GKE A;  4NB9 A; 
#chains in the Genus database with same CATH topology
 1L0L E;  2QJP C;  3L74 E;  4NBD D;  3L71 E;  1BE3 E;  4NBE A;  3VMH A;  4NBG D;  2I7F A;  1UUV A;  1G8K B;  1KYO E;  2BMO A;  3GL2 A;  3H1K E;  4QDD A;  3VMI D;  3N0Q A;  1SQV E;  2HMJ A;  4NBF A;  2HMK A;  1Z02 A;  4NBB A;  4NBC A;  3FOU A;  3GL0 A;  1Z03 A;  4NB8 D;  2BCC E;  5KLV E;  2DE5 A;  1BCC E;  3H1L E;  1Q90 C;  4HM6 A;  4H13 D;  3GTE A;  3VMG D;  2NWF A;  2ZT9 D;  3GZY A;  4PV1 D;  1SQQ E;  4QUP A;  1O7W A;  3GKQ A;  1O7N A;  2Q3W A;  2B1X A;  4NBD A;  1O7P A;  4OGQ D;  4NBG A;  1O7H A;  4HM8 A;  1NDO A;  1L0N E;  1RFS A;  1PP9 E;  1SQP E;  5HL4 A;  2JZA A;  1NU1 E;  3D89 A;  2BMR A;  4P1B H;  2HML A;  2NVG A;  3CXH E;  1ZRT E;  4NB8 A;  2YFL A;  2QPZ A;  4NBH D;  5BOK A;  1EG9 A;  4HM4 A;  1SQB E;  1P84 E;  3EQQ A;  3VMG A;  3L70 E;  2QJY C;  2XR8 A;  1VM9 A;  2DE7 A;  4HKV A;  5CXM A;  2DE6 A;  3DQY A;  4QDC A;  2FYN C;  3H1J E;  1G8J B;  1PPJ E;  3C0D A;  3GTS A;  2IBZ E;  1VCK A;  2YIU C;  5AEW A;  3GOB A;  3GCE A;  4HM0 A;  4EMJ B;  2BMQ A;  2NVF A;  5AEU A;  1RIE A;  4P1C H;  4QUR A;  4H0L D;  2HMM A;  3BCC E;  3EN1 A;  3VMI A;  2XSO A;  1FQT A;  4HM3 A;  4HM7 A;  4PD4 E;  4NBH A;  3L73 E;  1NTM E;  2E4P A;  3TGU E;  4NBE D;  4AAY B;  2ZYL A;  3H1H E;  5KLI C;  1SQX E;  2DE7 D;  4NBF D;  3VCA A;  2YFI A;  4QUQ A;  2E4Q A;  4NBB D;  4NBC D;  2E74 D;  3VCP A;  2HMN A;  1O7M A;  2E75 D;  2E76 D;  2FYU E;  2GBW A;  4HJL A;  2D2C D;  4QCK A;  2HMO A;  1Z01 A;  4HM1 A;  1WW9 A;  1ULJ A;  4QDF A;  3GB4 A;  4NBA D;  2YVJ B;  3CWB E;  4H44 D;  4QDF B;  2GBX A;  2QJK C;  4NB9 D;  3AZC A;  1JM1 A;  2JO6 A;  1EZV E;  2NVE A;  4AIV A;  4HM5 A;  3CX5 E;  1NYK A;  2CKF A;  3L72 E;  3VMH D;  1NTZ E;  4U3F E;  2XSH A;  2NUM A;  3L75 E;  2XRX A;  5KKZ C;  1KB9 E;  2B24 A;  3GCF A;  1UUW A;  3H1I E;  2NUK A;  3GZX A;  4HM2 A;  2A06 E;  2YFJ A;  1O7G A;  1ULI A;  1WQL A;  1NTK E;  4NBA A;  2DE6 D;  2DE5 D;  1VF5 D;  1SJG A;  3GKE A;  4NB9 A; 
#chains in the Genus database with same CATH homology
 1L0L E;  2QJP C;  3L74 E;  4NBD D;  3L71 E;  1BE3 E;  4NBE A;  3VMH A;  4NBG D;  2I7F A;  1UUV A;  1G8K B;  1KYO E;  2BMO A;  3GL2 A;  3H1K E;  4QDD A;  3VMI D;  3N0Q A;  1SQV E;  2HMJ A;  4NBF A;  2HMK A;  1Z02 A;  4NBB A;  4NBC A;  3FOU A;  3GL0 A;  1Z03 A;  4NB8 D;  2BCC E;  5KLV E;  2DE5 A;  1BCC E;  3H1L E;  1Q90 C;  4HM6 A;  4H13 D;  3GTE A;  3VMG D;  2NWF A;  2ZT9 D;  3GZY A;  4PV1 D;  1SQQ E;  4QUP A;  1O7W A;  3GKQ A;  1O7N A;  2Q3W A;  2B1X A;  4NBD A;  1O7P A;  4OGQ D;  4NBG A;  1O7H A;  4HM8 A;  1NDO A;  1L0N E;  1RFS A;  1PP9 E;  1SQP E;  5HL4 A;  2JZA A;  1NU1 E;  3D89 A;  2BMR A;  4P1B H;  2HML A;  2NVG A;  3CXH E;  1ZRT E;  4NB8 A;  2YFL A;  2QPZ A;  4NBH D;  5BOK A;  1EG9 A;  4HM4 A;  1SQB E;  1P84 E;  3EQQ A;  3VMG A;  3L70 E;  2QJY C;  2XR8 A;  1VM9 A;  2DE7 A;  4HKV A;  5CXM A;  2DE6 A;  3DQY A;  4QDC A;  2FYN C;  3H1J E;  1G8J B;  1PPJ E;  3C0D A;  3GTS A;  2IBZ E;  1VCK A;  2YIU C;  5AEW A;  3GOB A;  3GCE A;  4HM0 A;  4EMJ B;  2BMQ A;  2NVF A;  5AEU A;  1RIE A;  4P1C H;  4QUR A;  4H0L D;  2HMM A;  3BCC E;  3EN1 A;  3VMI A;  2XSO A;  1FQT A;  4HM3 A;  4HM7 A;  4PD4 E;  4NBH A;  3L73 E;  1NTM E;  2E4P A;  3TGU E;  4NBE D;  4AAY B;  2ZYL A;  3H1H E;  5KLI C;  1SQX E;  2DE7 D;  4NBF D;  3VCA A;  2YFI A;  4QUQ A;  2E4Q A;  4NBB D;  4NBC D;  2E74 D;  3VCP A;  2HMN A;  1O7M A;  2E75 D;  2E76 D;  2FYU E;  2GBW A;  4HJL A;  2D2C D;  4QCK A;  2HMO A;  1Z01 A;  4HM1 A;  1WW9 A;  1ULJ A;  4QDF A;  3GB4 A;  4NBA D;  2YVJ B;  3CWB E;  4H44 D;  4QDF B;  2GBX A;  2QJK C;  4NB9 D;  3AZC A;  1JM1 A;  2JO6 A;  1EZV E;  2NVE A;  4AIV A;  4HM5 A;  3CX5 E;  1NYK A;  2CKF A;  3L72 E;  3VMH D;  1NTZ E;  4U3F E;  2XSH A;  2NUM A;  3L75 E;  2XRX A;  5KKZ C;  1KB9 E;  2B24 A;  3GCF A;  1UUW A;  3H1I E;  2NUK A;  3GZX A;  4HM2 A;  2A06 E;  2YFJ A;  1O7G A;  1ULI A;  1WQL A;  1NTK E;  4NBA A;  2DE6 D;  2DE5 D;  1VF5 D;  1SJG A;  3GKE A;  4NB9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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