1NYKA

Crystal structure of the rieske protein from thermus thermophilus
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
156
structure length
156
Chain Sequence
TPEKEPLKPGDILVYAQGGGEPKPIRLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVARFDPEELAPEVAQHAAEGVVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPPPRPVPQLPVRVEDGVLVAAGEFLGPVGVQA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords Rieske iron-sulfur protein
publication title High resolution structure of the soluble, respiratory-type Rieske protein from Thermus thermophilus: Analysis and Comparison
pubmed doi rcsb
source organism Thermus thermophilus
total genus 36
structure length 156
sequence length 156
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-02-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1nykA00
5AEUA 2HMOA 1NTKE 3EQQA 3L72E 4OGQD 3FOUA 3BCCE 4HM8A 3H1HE 3CWBE 4HM0A 1SJGA 2NWFA 4AAYB 5BOKA 4U3FE 1WQLA 1ZRTE 2E75D 2BCCE 2BMOA 3H1IE 1O7WA 4NB8D 4QUPA 1G8KB 2QPZA 1FQTA 3GTEA 3GTSA 4PV1D 3EN1A 3L71E 3AZCA 2YFIA 1BE3E 1ULJA 3GZXA 3CX5E 2IBZE 4NBDD 4H13D 3VMID 3H1KE 4HM4A 4P1BH 5KLIC 1UUVA 4HJLA 2HMKA 1RFSA 3GL2A 3L75E 2B1XA 4NBBD 4QDCA 2E74D 3GL0A 2FYNC 2YFJA 2E76D 1NYKA 1EG9A 2QJYC 2FYUE 1L0NE 1EZVE 1SQXE 3H1JE 4HM6A 2Q3WA 2XSOA 3VCPA 4H44D 4NBAD 1RIEA 1Q90C 2CKFA 2DE5D 2XSHA 5AEWA 4AIVA 4QDFB 4HM7A 3L74E 1NTZE 4H0LD 2B24A 3C0DA 4HM2A 3VCAA 3DQYA 3GB4A 3VMGD 2HMJA 1SQPE 3CXHE 1ULIA 2QJKC 2YFLA 1BCCE 2NVEA 1SQBE 2YVJB 3L73E 5CXMA 3L70E 1VF5D 4HM3A 2DE7D 1O7MA 2XRXA 2BMQA 2I7FA 1O7PA 1SQVE 3GKEA 3GOBA 2NUKA 3TGUE 4QUQA 2DE6D 2JZAA 4NBFD 1L0LE 2YIUC 4NB9D 4NBCD 3GZYA 1NDOA 4NBGD 1JM1A 3N0QA 2QJPC 1KB9E 2E4QA 2ZYLA 4NBED 4HM5A 2E4PA 1PP9E 1P84E 2ZT9D 2A06E 1VCKA 4QURA 5HL4A 2XR8A 3H1LE 4HM1A 2D2CD 2NVFA 2NUMA 3VMHD 1O7NA 2BMRA 4QCKA 2HMMA 1NTME 1PPJE 4QDFA 4HKVA 2HMNA 4QDDA 1O7HA 1SQQE 4EMJB 2GBXA 2GBWA 4NBHD 4P1CH 1O7GA 2HMLA 2NVGA 1UUWA 2JO6A 5KLVE 1KYOE 4PD4E 1NU1E 1VM9A 3GCEA 1G8JB 3D89A 5KKZC
chains in the Genus database with same CATH superfamily
5AEUA 2HMOA 1NTKE 3EQQA 3L72E 4OGQD 3FOUA 3BCCE 4HM8A 3H1HE 3CWBE 4HM0A 1SJGA 2NWFA 4AAYB 5BOKA 4U3FE 1WQLA 1ZRTE 2E75D 2BCCE 2BMOA 3H1IE 1O7WA 4NB8D 4QUPA 1G8KB 2QPZA 1FQTA 3GTEA 3GTSA 4PV1D 3EN1A 3L71E 3AZCA 2YFIA 1BE3E 1ULJA 3GZXA 3CX5E 2IBZE 4NBDD 4H13D 3VMID 3H1KE 4HM4A 4P1BH 5KLIC 1UUVA 4HJLA 2HMKA 1RFSA 3GL2A 3L75E 2B1XA 4NBBD 4QDCA 2E74D 3GL0A 2FYNC 2YFJA 2E76D 1NYKA 1EG9A 2QJYC 2FYUE 1L0NE 1EZVE 1SQXE 3H1JE 4HM6A 2Q3WA 2XSOA 3VCPA 4H44D 4NBAD 1RIEA 1Q90C 2CKFA 2DE5D 2XSHA 5AEWA 4AIVA 4QDFB 4HM7A 3L74E 1NTZE 4H0LD 2B24A 3C0DA 4HM2A 3VCAA 3DQYA 3GB4A 3VMGD 2HMJA 1SQPE 3CXHE 1ULIA 2QJKC 2YFLA 1BCCE 2NVEA 1SQBE 2YVJB 3L73E 5CXMA 3L70E 1VF5D 4HM3A 2DE7D 1O7MA 2XRXA 2BMQA 2I7FA 1O7PA 1SQVE 3GKEA 3GOBA 2NUKA 3TGUE 4QUQA 2DE6D 2JZAA 4NBFD 1L0LE 2YIUC 4NB9D 4NBCD 3GZYA 1NDOA 4NBGD 1JM1A 3N0QA 2QJPC 1KB9E 2E4QA 2ZYLA 4NBED 4HM5A 2E4PA 1PP9E 1P84E 2ZT9D 2A06E 1VCKA 4QURA 5HL4A 2XR8A 3H1LE 4HM1A 2D2CD 2NVFA 2NUMA 3VMHD 1O7NA 2BMRA 4QCKA 2HMMA 1NTME 1PPJE 4QDFA 4HKVA 2HMNA 4QDDA 1O7HA 1SQQE 4EMJB 2GBXA 2GBWA 4NBHD 4P1CH 1O7GA 2HMLA 2NVGA 1UUWA 2JO6A 5KLVE 1KYOE 4PD4E 1NU1E 1VM9A 3GCEA 1G8JB 3D89A 5KKZC
chains in the Genus database with same CATH topology
5AEUA 2HMOA 1NTKE 3EQQA 3L72E 4OGQD 3FOUA 3BCCE 4HM8A 3H1HE 3CWBE 4HM0A 1SJGA 2NWFA 4AAYB 5BOKA 4U3FE 1WQLA 1ZRTE 2E75D 2BCCE 2BMOA 3H1IE 1O7WA 4NB8D 4QUPA 1G8KB 2QPZA 1FQTA 3GTEA 3GTSA 4PV1D 3EN1A 3L71E 3AZCA 2YFIA 1BE3E 1ULJA 3GZXA 3CX5E 2IBZE 4NBDD 4H13D 3VMID 3H1KE 4HM4A 4P1BH 5KLIC 1UUVA 4HJLA 2HMKA 1RFSA 3GL2A 3L75E 2B1XA 4NBBD 4QDCA 2E74D 3GL0A 2FYNC 2YFJA 2E76D 1NYKA 1EG9A 2QJYC 2FYUE 1L0NE 1EZVE 1SQXE 3H1JE 4HM6A 2Q3WA 2XSOA 3VCPA 4H44D 4NBAD 1RIEA 1Q90C 2CKFA 2DE5D 2XSHA 5AEWA 4AIVA 4QDFB 4HM7A 3L74E 1NTZE 4H0LD 2B24A 3C0DA 4HM2A 3VCAA 3DQYA 3GB4A 3VMGD 2HMJA 1SQPE 3CXHE 1ULIA 2QJKC 2YFLA 1BCCE 2NVEA 1SQBE 2YVJB 3L73E 5CXMA 3L70E 1VF5D 4HM3A 2DE7D 1O7MA 2XRXA 2BMQA 2I7FA 1O7PA 1SQVE 3GKEA 3GOBA 2NUKA 3TGUE 4QUQA 2DE6D 2JZAA 4NBFD 1L0LE 2YIUC 4NB9D 4NBCD 3GZYA 1NDOA 4NBGD 1JM1A 3N0QA 2QJPC 1KB9E 2E4QA 2ZYLA 4NBED 4HM5A 2E4PA 1PP9E 1P84E 2ZT9D 2A06E 1VCKA 4QURA 5HL4A 2XR8A 3H1LE 4HM1A 2D2CD 2NVFA 2NUMA 3VMHD 1O7NA 2BMRA 4QCKA 2HMMA 1NTME 1PPJE 4QDFA 4HKVA 2HMNA 4QDDA 1O7HA 1SQQE 4EMJB 2GBXA 2GBWA 4NBHD 4P1CH 1O7GA 2HMLA 2NVGA 1UUWA 2JO6A 5KLVE 1KYOE 4PD4E 1NU1E 1VM9A 3GCEA 1G8JB 3D89A 5KKZC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AEU A;  2HMO A;  1NTK E;  3EQQ A;  3L72 E;  4OGQ D;  3FOU A;  3BCC E;  4HM8 A;  3H1H E;  3CWB E;  4HM0 A;  1SJG A;  2NWF A;  4AAY B;  5BOK A;  4U3F E;  1WQL A;  1ZRT E;  2E75 D;  2BCC E;  2BMO A;  3H1I E;  1O7W A;  4NB8 D;  4QUP A;  1G8K B;  2QPZ A;  1FQT A;  3GTE A;  3GTS A;  4PV1 D;  3EN1 A;  3L71 E;  3AZC A;  2YFI A;  1BE3 E;  1ULJ A;  3GZX A;  3CX5 E;  2IBZ E;  4NBD D;  4H13 D;  3VMI D;  3H1K E;  4HM4 A;  4P1B H;  5KLI C;  1UUV A;  4HJL A;  2HMK A;  1RFS A;  3GL2 A;  3L75 E;  2B1X A;  4NBB D;  4QDC A;  2E74 D;  3GL0 A;  2FYN C;  2YFJ A;  2E76 D;  1NYK A;  1EG9 A;  2QJY C;  2FYU E;  1L0N E;  1EZV E;  1SQX E;  3H1J E;  4HM6 A;  2Q3W A;  2XSO A;  3VCP A;  4H44 D;  4NBA D;  1RIE A;  1Q90 C;  2CKF A;  2DE5 D;  2XSH A;  5AEW A;  4AIV A;  4QDF B;  4HM7 A;  3L74 E;  1NTZ E;  4H0L D;  2B24 A;  3C0D A;  4HM2 A;  3VCA A;  3DQY A;  3GB4 A;  3VMG D;  2HMJ A;  1SQP E;  3CXH E;  1ULI A;  2QJK C;  2YFL A;  1BCC E;  2NVE A;  1SQB E;  2YVJ B;  3L73 E;  5CXM A;  3L70 E;  1VF5 D;  4HM3 A;  2DE7 D;  1O7M A;  2XRX A;  2BMQ A;  2I7F A;  1O7P A;  1SQV E;  3GKE A;  3GOB A;  2NUK A;  3TGU E;  4QUQ A;  2DE6 D;  2JZA A;  4NBF D;  1L0L E;  2YIU C;  4NB9 D;  4NBC D;  3GZY A;  1NDO A;  4NBG D;  1JM1 A;  3N0Q A;  2QJP C;  1KB9 E;  2E4Q A;  2ZYL A;  4NBE D;  4HM5 A;  2E4P A;  1PP9 E;  1P84 E;  2ZT9 D;  2A06 E;  1VCK A;  4QUR A;  5HL4 A;  2XR8 A;  3H1L E;  4HM1 A;  2D2C D;  2NVF A;  2NUM A;  3VMH D;  1O7N A;  2BMR A;  4QCK A;  2HMM A;  1NTM E;  1PPJ E;  4QDF A;  4HKV A;  2HMN A;  4QDD A;  1O7H A;  1SQQ E;  4EMJ B;  2GBX A;  2GBW A;  4NBH D;  4P1C H;  1O7G A;  2HML A;  2NVG A;  1UUW A;  2JO6 A;  5KLV E;  1KYO E;  4PD4 E;  1NU1 E;  1VM9 A;  3GCE A;  1G8J B;  3D89 A;  5KKZ C; 
#chains in the Genus database with same CATH topology
 5AEU A;  2HMO A;  1NTK E;  3EQQ A;  3L72 E;  4OGQ D;  3FOU A;  3BCC E;  4HM8 A;  3H1H E;  3CWB E;  4HM0 A;  1SJG A;  2NWF A;  4AAY B;  5BOK A;  4U3F E;  1WQL A;  1ZRT E;  2E75 D;  2BCC E;  2BMO A;  3H1I E;  1O7W A;  4NB8 D;  4QUP A;  1G8K B;  2QPZ A;  1FQT A;  3GTE A;  3GTS A;  4PV1 D;  3EN1 A;  3L71 E;  3AZC A;  2YFI A;  1BE3 E;  1ULJ A;  3GZX A;  3CX5 E;  2IBZ E;  4NBD D;  4H13 D;  3VMI D;  3H1K E;  4HM4 A;  4P1B H;  5KLI C;  1UUV A;  4HJL A;  2HMK A;  1RFS A;  3GL2 A;  3L75 E;  2B1X A;  4NBB D;  4QDC A;  2E74 D;  3GL0 A;  2FYN C;  2YFJ A;  2E76 D;  1NYK A;  1EG9 A;  2QJY C;  2FYU E;  1L0N E;  1EZV E;  1SQX E;  3H1J E;  4HM6 A;  2Q3W A;  2XSO A;  3VCP A;  4H44 D;  4NBA D;  1RIE A;  1Q90 C;  2CKF A;  2DE5 D;  2XSH A;  5AEW A;  4AIV A;  4QDF B;  4HM7 A;  3L74 E;  1NTZ E;  4H0L D;  2B24 A;  3C0D A;  4HM2 A;  3VCA A;  3DQY A;  3GB4 A;  3VMG D;  2HMJ A;  1SQP E;  3CXH E;  1ULI A;  2QJK C;  2YFL A;  1BCC E;  2NVE A;  1SQB E;  2YVJ B;  3L73 E;  5CXM A;  3L70 E;  1VF5 D;  4HM3 A;  2DE7 D;  1O7M A;  2XRX A;  2BMQ A;  2I7F A;  1O7P A;  1SQV E;  3GKE A;  3GOB A;  2NUK A;  3TGU E;  4QUQ A;  2DE6 D;  2JZA A;  4NBF D;  1L0L E;  2YIU C;  4NB9 D;  4NBC D;  3GZY A;  1NDO A;  4NBG D;  1JM1 A;  3N0Q A;  2QJP C;  1KB9 E;  2E4Q A;  2ZYL A;  4NBE D;  4HM5 A;  2E4P A;  1PP9 E;  1P84 E;  2ZT9 D;  2A06 E;  1VCK A;  4QUR A;  5HL4 A;  2XR8 A;  3H1L E;  4HM1 A;  2D2C D;  2NVF A;  2NUM A;  3VMH D;  1O7N A;  2BMR A;  4QCK A;  2HMM A;  1NTM E;  1PPJ E;  4QDF A;  4HKV A;  2HMN A;  4QDD A;  1O7H A;  1SQQ E;  4EMJ B;  2GBX A;  2GBW A;  4NBH D;  4P1C H;  1O7G A;  2HML A;  2NVG A;  1UUW A;  2JO6 A;  5KLV E;  1KYO E;  4PD4 E;  1NU1 E;  1VM9 A;  3GCE A;  1G8J B;  3D89 A;  5KKZ C; 
#chains in the Genus database with same CATH homology
 5AEU A;  2HMO A;  1NTK E;  3EQQ A;  3L72 E;  4OGQ D;  3FOU A;  3BCC E;  4HM8 A;  3H1H E;  3CWB E;  4HM0 A;  1SJG A;  2NWF A;  4AAY B;  5BOK A;  4U3F E;  1WQL A;  1ZRT E;  2E75 D;  2BCC E;  2BMO A;  3H1I E;  1O7W A;  4NB8 D;  4QUP A;  1G8K B;  2QPZ A;  1FQT A;  3GTE A;  3GTS A;  4PV1 D;  3EN1 A;  3L71 E;  3AZC A;  2YFI A;  1BE3 E;  1ULJ A;  3GZX A;  3CX5 E;  2IBZ E;  4NBD D;  4H13 D;  3VMI D;  3H1K E;  4HM4 A;  4P1B H;  5KLI C;  1UUV A;  4HJL A;  2HMK A;  1RFS A;  3GL2 A;  3L75 E;  2B1X A;  4NBB D;  4QDC A;  2E74 D;  3GL0 A;  2FYN C;  2YFJ A;  2E76 D;  1NYK A;  1EG9 A;  2QJY C;  2FYU E;  1L0N E;  1EZV E;  1SQX E;  3H1J E;  4HM6 A;  2Q3W A;  2XSO A;  3VCP A;  4H44 D;  4NBA D;  1RIE A;  1Q90 C;  2CKF A;  2DE5 D;  2XSH A;  5AEW A;  4AIV A;  4QDF B;  4HM7 A;  3L74 E;  1NTZ E;  4H0L D;  2B24 A;  3C0D A;  4HM2 A;  3VCA A;  3DQY A;  3GB4 A;  3VMG D;  2HMJ A;  1SQP E;  3CXH E;  1ULI A;  2QJK C;  2YFL A;  1BCC E;  2NVE A;  1SQB E;  2YVJ B;  3L73 E;  5CXM A;  3L70 E;  1VF5 D;  4HM3 A;  2DE7 D;  1O7M A;  2XRX A;  2BMQ A;  2I7F A;  1O7P A;  1SQV E;  3GKE A;  3GOB A;  2NUK A;  3TGU E;  4QUQ A;  2DE6 D;  2JZA A;  4NBF D;  1L0L E;  2YIU C;  4NB9 D;  4NBC D;  3GZY A;  1NDO A;  4NBG D;  1JM1 A;  3N0Q A;  2QJP C;  1KB9 E;  2E4Q A;  2ZYL A;  4NBE D;  4HM5 A;  2E4P A;  1PP9 E;  1P84 E;  2ZT9 D;  2A06 E;  1VCK A;  4QUR A;  5HL4 A;  2XR8 A;  3H1L E;  4HM1 A;  2D2C D;  2NVF A;  2NUM A;  3VMH D;  1O7N A;  2BMR A;  4QCK A;  2HMM A;  1NTM E;  1PPJ E;  4QDF A;  4HKV A;  2HMN A;  4QDD A;  1O7H A;  1SQQ E;  4EMJ B;  2GBX A;  2GBW A;  4NBH D;  4P1C H;  1O7G A;  2HML A;  2NVG A;  1UUW A;  2JO6 A;  5KLV E;  1KYO E;  4PD4 E;  1NU1 E;  1VM9 A;  3GCE A;  1G8J B;  3D89 A;  5KKZ C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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