1FQTA

Crystal structure of the rieske-type ferredoxin associated with biphenyl dioxygenase
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
109
structure length
109
Chain Sequence
MKFTRVCDRRDVPEGEALKVESGGTSVAIFNVDGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSPPPCEALKIFPIRIEDNDVLVDFEAGYLAP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
source organism Burkholderia xenovorans
publication title A cluster exposed: structure of the Rieske ferredoxin from biphenyl dioxygenase and the redox properties of Rieske Fe-S proteins.
pubmed doi rcsb
molecule keywords RIESKE-TYPE FERREDOXIN OF BIPHENYL DIOXYGENASE
total genus 22
structure length 109
sequence length 109
chains with identical sequence B
ec nomenclature ec 1.14.12.-:
pdb deposition date 2000-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1fqtA00
1G8KB 1BCCE 3C0DA 2HMOA 1ULJA 1EZVE 4HM1A 2NVEA 1KYOE 3GL0A 2QPZA 1SQQE 4QDFB 4QCKA 2YVJB 2IBZE 1L0LE 2XSOA 1ULIA 2E74D 5BOKA 2ZYLA 2I7FA 4HM3A 2BMOA 5HL4A 2B1XA 3L71E 4HM0A 2B24A 2FYNC 4AIVA 2YFJA 1O7MA 3GZXA 3L74E 3L72E 2QJYC 2XSHA 3GZYA 2NUMA 1PPJE 3GTSA 1SQVE 1SQBE 1UUWA 2D2CD 2E4QA 1P84E 2NWFA 1O7GA 2HMJA 2NVFA 4NB9D 2GBWA 2QJPC 2XRXA 1PP9E 3L75E 3CX5E 2E4PA 4AAYB 3EQQA 1G8JB 3VCAA 2JZAA 3CWBE 3H1KE 2BCCE 2GBXA 4NBDD 4OGQD 1O7NA 2JO6A 3GCEA 3GB4A 4PD4E 2E75D 1NDOA 1NTZE 1VF5D 4NBED 3TGUE 5KKZC 2CKFA 1VCKA 1FQTA 1BE3E 1ZRTE 4HM4A 1NTKE 3AZCA 4NBAD 4QUQA 1SJGA 5AEWA 4NBFD 1WQLA 1L0NE 4NB8D 1UUVA 2HMNA 3VMID 3GKEA 4HM6A 2ZT9D 4QURA 1RFSA 2BMQA 2YIUC 3N0QA 4P1BH 5KLIC 3H1LE 4QDCA 1RIEA 3L73E 2A06E 1KB9E 1EG9A 5CXMA 1O7HA 2XR8A 2YFIA 4H0LD 2FYUE 3VCPA 2HMLA 2Q3WA 4NBCD 4H44D 4HM7A 1NYKA 3DQYA 2NVGA 4U3FE 3GOBA 2NUKA 4HM2A 3FOUA 2HMMA 4HJLA 5KLVE 2HMKA 1VM9A 4P1CH 4HM8A 3EN1A 1JM1A 1SQXE 2E76D 3H1JE 1O7WA 3L70E 3GL2A 4H13D 4QUPA 3GTEA 4NBBD 3H1IE 3VMHD 4QDDA 2BMRA 3H1HE 2YFLA 3D89A 1Q90C 4PV1D 4HM5A 5AEUA 2DE5D 3BCCE 2QJKC 4EMJB 1SQPE 1NU1E 4QDFA 3CXHE 1NTME 1O7PA 4NBGD 4HKVA 4NBHD 2DE6D 3VMGD 2DE7D
chains in the Genus database with same CATH superfamily
1G8KB 1BCCE 3C0DA 2HMOA 1ULJA 1EZVE 4HM1A 2NVEA 1KYOE 3GL0A 2QPZA 1SQQE 4QDFB 4QCKA 2YVJB 2IBZE 1L0LE 2XSOA 1ULIA 2E74D 5BOKA 2ZYLA 2I7FA 4HM3A 2BMOA 5HL4A 2B1XA 3L71E 4HM0A 2B24A 2FYNC 4AIVA 2YFJA 1O7MA 3GZXA 3L74E 3L72E 2QJYC 2XSHA 3GZYA 2NUMA 1PPJE 3GTSA 1SQVE 1SQBE 1UUWA 2D2CD 2E4QA 1P84E 2NWFA 1O7GA 2HMJA 2NVFA 4NB9D 2GBWA 2QJPC 2XRXA 1PP9E 3L75E 3CX5E 2E4PA 4AAYB 3EQQA 1G8JB 3VCAA 2JZAA 3CWBE 3H1KE 2BCCE 2GBXA 4NBDD 4OGQD 1O7NA 2JO6A 3GCEA 3GB4A 4PD4E 2E75D 1NDOA 1NTZE 1VF5D 4NBED 3TGUE 5KKZC 2CKFA 1VCKA 1FQTA 1BE3E 1ZRTE 4HM4A 1NTKE 3AZCA 4NBAD 4QUQA 1SJGA 5AEWA 4NBFD 1WQLA 1L0NE 4NB8D 1UUVA 2HMNA 3VMID 3GKEA 4HM6A 2ZT9D 4QURA 1RFSA 2BMQA 2YIUC 3N0QA 4P1BH 5KLIC 3H1LE 4QDCA 1RIEA 3L73E 2A06E 1KB9E 1EG9A 5CXMA 1O7HA 2XR8A 2YFIA 4H0LD 2FYUE 3VCPA 2HMLA 2Q3WA 4NBCD 4H44D 4HM7A 1NYKA 3DQYA 2NVGA 4U3FE 3GOBA 2NUKA 4HM2A 3FOUA 2HMMA 4HJLA 5KLVE 2HMKA 1VM9A 4P1CH 4HM8A 3EN1A 1JM1A 1SQXE 2E76D 3H1JE 1O7WA 3L70E 3GL2A 4H13D 4QUPA 3GTEA 4NBBD 3H1IE 3VMHD 4QDDA 2BMRA 3H1HE 2YFLA 3D89A 1Q90C 4PV1D 4HM5A 5AEUA 2DE5D 3BCCE 2QJKC 4EMJB 1SQPE 1NU1E 4QDFA 3CXHE 1NTME 1O7PA 4NBGD 4HKVA 4NBHD 2DE6D 3VMGD 2DE7D
chains in the Genus database with same CATH topology
1G8KB 1BCCE 3C0DA 2HMOA 1ULJA 1EZVE 4HM1A 2NVEA 1KYOE 3GL0A 2QPZA 1SQQE 4QDFB 4QCKA 2YVJB 2IBZE 1L0LE 2XSOA 1ULIA 2E74D 5BOKA 2ZYLA 2I7FA 4HM3A 2BMOA 5HL4A 2B1XA 3L71E 4HM0A 2B24A 2FYNC 4AIVA 2YFJA 1O7MA 3GZXA 3L74E 3L72E 2QJYC 2XSHA 3GZYA 2NUMA 1PPJE 3GTSA 1SQVE 1SQBE 1UUWA 2D2CD 2E4QA 1P84E 2NWFA 1O7GA 2HMJA 2NVFA 4NB9D 2GBWA 2QJPC 2XRXA 1PP9E 3L75E 3CX5E 2E4PA 4AAYB 3EQQA 1G8JB 3VCAA 2JZAA 3CWBE 3H1KE 2BCCE 2GBXA 4NBDD 4OGQD 1O7NA 2JO6A 3GCEA 3GB4A 4PD4E 2E75D 1NDOA 1NTZE 1VF5D 4NBED 3TGUE 5KKZC 2CKFA 1VCKA 1FQTA 1BE3E 1ZRTE 4HM4A 1NTKE 3AZCA 4NBAD 4QUQA 1SJGA 5AEWA 4NBFD 1WQLA 1L0NE 4NB8D 1UUVA 2HMNA 3VMID 3GKEA 4HM6A 2ZT9D 4QURA 1RFSA 2BMQA 2YIUC 3N0QA 4P1BH 5KLIC 3H1LE 4QDCA 1RIEA 3L73E 2A06E 1KB9E 1EG9A 5CXMA 1O7HA 2XR8A 2YFIA 4H0LD 2FYUE 3VCPA 2HMLA 2Q3WA 4NBCD 4H44D 4HM7A 1NYKA 3DQYA 2NVGA 4U3FE 3GOBA 2NUKA 4HM2A 3FOUA 2HMMA 4HJLA 5KLVE 2HMKA 1VM9A 4P1CH 4HM8A 3EN1A 1JM1A 1SQXE 2E76D 3H1JE 1O7WA 3L70E 3GL2A 4H13D 4QUPA 3GTEA 4NBBD 3H1IE 3VMHD 4QDDA 2BMRA 3H1HE 2YFLA 3D89A 1Q90C 4PV1D 4HM5A 5AEUA 2DE5D 3BCCE 2QJKC 4EMJB 1SQPE 1NU1E 4QDFA 3CXHE 1NTME 1O7PA 4NBGD 4HKVA 4NBHD 2DE6D 3VMGD 2DE7D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1G8K B;  1BCC E;  3C0D A;  2HMO A;  1ULJ A;  1EZV E;  4HM1 A;  2NVE A;  1KYO E;  3GL0 A;  2QPZ A;  1SQQ E;  4QDF B;  4QCK A;  2YVJ B;  2IBZ E;  1L0L E;  2XSO A;  1ULI A;  2E74 D;  5BOK A;  2ZYL A;  2I7F A;  4HM3 A;  2BMO A;  5HL4 A;  2B1X A;  3L71 E;  4HM0 A;  2B24 A;  2FYN C;  4AIV A;  2YFJ A;  1O7M A;  3GZX A;  3L74 E;  3L72 E;  2QJY C;  2XSH A;  3GZY A;  2NUM A;  1PPJ E;  3GTS A;  1SQV E;  1SQB E;  1UUW A;  2D2C D;  2E4Q A;  1P84 E;  2NWF A;  1O7G A;  2HMJ A;  2NVF A;  4NB9 D;  2GBW A;  2QJP C;  2XRX A;  1PP9 E;  3L75 E;  3CX5 E;  2E4P A;  4AAY B;  3EQQ A;  1G8J B;  3VCA A;  2JZA A;  3CWB E;  3H1K E;  2BCC E;  2GBX A;  4NBD D;  4OGQ D;  1O7N A;  2JO6 A;  3GCE A;  3GB4 A;  4PD4 E;  2E75 D;  1NDO A;  1NTZ E;  1VF5 D;  4NBE D;  3TGU E;  5KKZ C;  2CKF A;  1VCK A;  1FQT A;  1BE3 E;  1ZRT E;  4HM4 A;  1NTK E;  3AZC A;  4NBA D;  4QUQ A;  1SJG A;  5AEW A;  4NBF D;  1WQL A;  1L0N E;  4NB8 D;  1UUV A;  2HMN A;  3VMI D;  3GKE A;  4HM6 A;  2ZT9 D;  4QUR A;  1RFS A;  2BMQ A;  2YIU C;  3N0Q A;  4P1B H;  5KLI C;  3H1L E;  4QDC A;  1RIE A;  3L73 E;  2A06 E;  1KB9 E;  1EG9 A;  5CXM A;  1O7H A;  2XR8 A;  2YFI A;  4H0L D;  2FYU E;  3VCP A;  2HML A;  2Q3W A;  4NBC D;  4H44 D;  4HM7 A;  1NYK A;  3DQY A;  2NVG A;  4U3F E;  3GOB A;  2NUK A;  4HM2 A;  3FOU A;  2HMM A;  4HJL A;  5KLV E;  2HMK A;  1VM9 A;  4P1C H;  4HM8 A;  3EN1 A;  1JM1 A;  1SQX E;  2E76 D;  3H1J E;  1O7W A;  3L70 E;  3GL2 A;  4H13 D;  4QUP A;  3GTE A;  4NBB D;  3H1I E;  3VMH D;  4QDD A;  2BMR A;  3H1H E;  2YFL A;  3D89 A;  1Q90 C;  4PV1 D;  4HM5 A;  5AEU A;  2DE5 D;  3BCC E;  2QJK C;  4EMJ B;  1SQP E;  1NU1 E;  4QDF A;  3CXH E;  1NTM E;  1O7P A;  4NBG D;  4HKV A;  4NBH D;  2DE6 D;  3VMG D;  2DE7 D; 
#chains in the Genus database with same CATH topology
 1G8K B;  1BCC E;  3C0D A;  2HMO A;  1ULJ A;  1EZV E;  4HM1 A;  2NVE A;  1KYO E;  3GL0 A;  2QPZ A;  1SQQ E;  4QDF B;  4QCK A;  2YVJ B;  2IBZ E;  1L0L E;  2XSO A;  1ULI A;  2E74 D;  5BOK A;  2ZYL A;  2I7F A;  4HM3 A;  2BMO A;  5HL4 A;  2B1X A;  3L71 E;  4HM0 A;  2B24 A;  2FYN C;  4AIV A;  2YFJ A;  1O7M A;  3GZX A;  3L74 E;  3L72 E;  2QJY C;  2XSH A;  3GZY A;  2NUM A;  1PPJ E;  3GTS A;  1SQV E;  1SQB E;  1UUW A;  2D2C D;  2E4Q A;  1P84 E;  2NWF A;  1O7G A;  2HMJ A;  2NVF A;  4NB9 D;  2GBW A;  2QJP C;  2XRX A;  1PP9 E;  3L75 E;  3CX5 E;  2E4P A;  4AAY B;  3EQQ A;  1G8J B;  3VCA A;  2JZA A;  3CWB E;  3H1K E;  2BCC E;  2GBX A;  4NBD D;  4OGQ D;  1O7N A;  2JO6 A;  3GCE A;  3GB4 A;  4PD4 E;  2E75 D;  1NDO A;  1NTZ E;  1VF5 D;  4NBE D;  3TGU E;  5KKZ C;  2CKF A;  1VCK A;  1FQT A;  1BE3 E;  1ZRT E;  4HM4 A;  1NTK E;  3AZC A;  4NBA D;  4QUQ A;  1SJG A;  5AEW A;  4NBF D;  1WQL A;  1L0N E;  4NB8 D;  1UUV A;  2HMN A;  3VMI D;  3GKE A;  4HM6 A;  2ZT9 D;  4QUR A;  1RFS A;  2BMQ A;  2YIU C;  3N0Q A;  4P1B H;  5KLI C;  3H1L E;  4QDC A;  1RIE A;  3L73 E;  2A06 E;  1KB9 E;  1EG9 A;  5CXM A;  1O7H A;  2XR8 A;  2YFI A;  4H0L D;  2FYU E;  3VCP A;  2HML A;  2Q3W A;  4NBC D;  4H44 D;  4HM7 A;  1NYK A;  3DQY A;  2NVG A;  4U3F E;  3GOB A;  2NUK A;  4HM2 A;  3FOU A;  2HMM A;  4HJL A;  5KLV E;  2HMK A;  1VM9 A;  4P1C H;  4HM8 A;  3EN1 A;  1JM1 A;  1SQX E;  2E76 D;  3H1J E;  1O7W A;  3L70 E;  3GL2 A;  4H13 D;  4QUP A;  3GTE A;  4NBB D;  3H1I E;  3VMH D;  4QDD A;  2BMR A;  3H1H E;  2YFL A;  3D89 A;  1Q90 C;  4PV1 D;  4HM5 A;  5AEU A;  2DE5 D;  3BCC E;  2QJK C;  4EMJ B;  1SQP E;  1NU1 E;  4QDF A;  3CXH E;  1NTM E;  1O7P A;  4NBG D;  4HKV A;  4NBH D;  2DE6 D;  3VMG D;  2DE7 D; 
#chains in the Genus database with same CATH homology
 1G8K B;  1BCC E;  3C0D A;  2HMO A;  1ULJ A;  1EZV E;  4HM1 A;  2NVE A;  1KYO E;  3GL0 A;  2QPZ A;  1SQQ E;  4QDF B;  4QCK A;  2YVJ B;  2IBZ E;  1L0L E;  2XSO A;  1ULI A;  2E74 D;  5BOK A;  2ZYL A;  2I7F A;  4HM3 A;  2BMO A;  5HL4 A;  2B1X A;  3L71 E;  4HM0 A;  2B24 A;  2FYN C;  4AIV A;  2YFJ A;  1O7M A;  3GZX A;  3L74 E;  3L72 E;  2QJY C;  2XSH A;  3GZY A;  2NUM A;  1PPJ E;  3GTS A;  1SQV E;  1SQB E;  1UUW A;  2D2C D;  2E4Q A;  1P84 E;  2NWF A;  1O7G A;  2HMJ A;  2NVF A;  4NB9 D;  2GBW A;  2QJP C;  2XRX A;  1PP9 E;  3L75 E;  3CX5 E;  2E4P A;  4AAY B;  3EQQ A;  1G8J B;  3VCA A;  2JZA A;  3CWB E;  3H1K E;  2BCC E;  2GBX A;  4NBD D;  4OGQ D;  1O7N A;  2JO6 A;  3GCE A;  3GB4 A;  4PD4 E;  2E75 D;  1NDO A;  1NTZ E;  1VF5 D;  4NBE D;  3TGU E;  5KKZ C;  2CKF A;  1VCK A;  1FQT A;  1BE3 E;  1ZRT E;  4HM4 A;  1NTK E;  3AZC A;  4NBA D;  4QUQ A;  1SJG A;  5AEW A;  4NBF D;  1WQL A;  1L0N E;  4NB8 D;  1UUV A;  2HMN A;  3VMI D;  3GKE A;  4HM6 A;  2ZT9 D;  4QUR A;  1RFS A;  2BMQ A;  2YIU C;  3N0Q A;  4P1B H;  5KLI C;  3H1L E;  4QDC A;  1RIE A;  3L73 E;  2A06 E;  1KB9 E;  1EG9 A;  5CXM A;  1O7H A;  2XR8 A;  2YFI A;  4H0L D;  2FYU E;  3VCP A;  2HML A;  2Q3W A;  4NBC D;  4H44 D;  4HM7 A;  1NYK A;  3DQY A;  2NVG A;  4U3F E;  3GOB A;  2NUK A;  4HM2 A;  3FOU A;  2HMM A;  4HJL A;  5KLV E;  2HMK A;  1VM9 A;  4P1C H;  4HM8 A;  3EN1 A;  1JM1 A;  1SQX E;  2E76 D;  3H1J E;  1O7W A;  3L70 E;  3GL2 A;  4H13 D;  4QUP A;  3GTE A;  4NBB D;  3H1I E;  3VMH D;  4QDD A;  2BMR A;  3H1H E;  2YFL A;  3D89 A;  1Q90 C;  4PV1 D;  4HM5 A;  5AEU A;  2DE5 D;  3BCC E;  2QJK C;  4EMJ B;  1SQP E;  1NU1 E;  4QDF A;  3CXH E;  1NTM E;  1O7P A;  4NBG D;  4HKV A;  4NBH D;  2DE6 D;  3VMG D;  2DE7 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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