1FQTA

Crystal structure of the rieske-type ferredoxin associated with biphenyl dioxygenase
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
109
structure length
109
Chain Sequence
b'MKFTRVCDRRDVPEGEALKVESGGTSVAIFNVDGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSPPPCEALKIFPIRIEDNDVLVDFEAGYLAP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A cluster exposed: structure of the Rieske ferredoxin from biphenyl dioxygenase and the redox properties of Rieske Fe-S proteins.
pubmed doi rcsb
molecule keywords RIESKE-TYPE FERREDOXIN OF BIPHENYL DIOXYGENASE
source organism Burkholderia xenovorans
molecule tags Oxidoreductase
total genus 22
structure length 109
sequence length 109
chains with identical sequence B
ec nomenclature ec 1.14.12.-:
pdb deposition date 2000-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1fqtA00
2BMOA 3BCCE 3GL2A 2IBZE 4HM8A 1O7GA 4NBBD 5BOKA 3DQYA 3GTSA 3H1LE 2JZAA 2XR8A 1ULIA 1PPJE 2I7FA 2YFJA 2HMMA 3VMID 4QDFA 1NTKE 1BCCE 4HM0A 4HM1A 4NBED 4HJLA 4OGQD 1WQLA 1VM9A 2HMOA 3L73E 4PV1D 1NU1E 4HKVA 3VCPA 1P84E 2NVEA 1NTZE 2QPZA 1SQBE 1VCKA 4QUQA 5CXMA 4HM7A 2QJYC 1O7PA 2HMNA 3AZCA 4H0LD 2B24A 1ZRTE 2NVGA 4QDCA 4AAYB 4NBAD 2JO6A 1L0NE 3GZXA 2E75D 1KYOE 1PP9E 3L75E 2D2CD 4HM2A 4NBCD 4EMJB 2NUMA 2HMJA 2FYUE 2E76D 3H1IE 1G8JB 2NWFA 4NBHD 2YFLA 4PD4E 3TGUE 3EN1A 3CWBE 4AIVA 5AEUA 5AEWA 2FYNC 3EQQA 3GB4A 3C0DA 1SQVE 3CXHE 2DE5D 1Q90C 4QURA 3L74E 3CX5E 2BMQA 3L71E 1NTME 1SJGA 1SQQE 2YIUC 2BMRA 2B1XA 4NB8D 2E4PA 2Q3WA 1SQPE 1RIEA 2DE6D 1KB9E 2XSHA 2QJPC 2DE7D 4P1CH 1UUWA 1O7WA 4H44D 1VF5D 4HM5A 3VMGD 1G8KB 5KLIC 1JM1A 4NBDD 3H1HE 2XRXA 5KKZC 3H1JE 3VMHD 1FQTA 4HM3A 3L72E 1NDOA 3H1KE 3GKEA 2QJKC 4QDDA 2CKFA 3GZYA 1O7NA 2E4QA 2YVJB 5KLVE 4HM6A 4NBGD 4H13D 2HMLA 1ULJA 3FOUA 3N0QA 2YFIA 1L0LE 1EG9A 2XSOA 2NUKA 4QDFB 3GOBA 1O7MA 2BCCE 2NVFA 4P1BH 2HMKA 2ZT9D 4HM4A 2GBXA 2ZYLA 2GBWA 1UUVA 1RFSA 1SQXE 3L70E 5HL4A 4QUPA 4QCKA 3GL0A 4NBFD 1NYKA 2A06E 3GTEA 3VCAA 3D89A 1EZVE 4U3FE 3GCEA 1BE3E 4NB9D 1O7HA 2E74D
chains in the Genus database with same CATH superfamily
2BMOA 3BCCE 3GL2A 2IBZE 4HM8A 1O7GA 4NBBD 5BOKA 3DQYA 3GTSA 3H1LE 2JZAA 2XR8A 1ULIA 1PPJE 2I7FA 2YFJA 2HMMA 3VMID 4QDFA 1NTKE 1BCCE 4HM0A 4HM1A 4NBED 4HJLA 4OGQD 1WQLA 1VM9A 2HMOA 3L73E 4PV1D 1NU1E 4HKVA 3VCPA 1P84E 2NVEA 1NTZE 2QPZA 1SQBE 1VCKA 4QUQA 5CXMA 4HM7A 2QJYC 1O7PA 2HMNA 3AZCA 4H0LD 2B24A 1ZRTE 2NVGA 4QDCA 4AAYB 4NBAD 2JO6A 1L0NE 3GZXA 2E75D 1KYOE 1PP9E 3L75E 2D2CD 4HM2A 4NBCD 4EMJB 2NUMA 2HMJA 2FYUE 2E76D 3H1IE 1G8JB 2NWFA 4NBHD 2YFLA 4PD4E 3TGUE 3EN1A 3CWBE 4AIVA 5AEUA 5AEWA 2FYNC 3EQQA 3GB4A 3C0DA 1SQVE 3CXHE 2DE5D 1Q90C 4QURA 3L74E 3CX5E 2BMQA 3L71E 1NTME 1SJGA 1SQQE 2YIUC 2BMRA 2B1XA 4NB8D 2E4PA 2Q3WA 1SQPE 1RIEA 2DE6D 1KB9E 2XSHA 2QJPC 2DE7D 4P1CH 1UUWA 1O7WA 4H44D 1VF5D 4HM5A 3VMGD 1G8KB 5KLIC 1JM1A 4NBDD 3H1HE 2XRXA 5KKZC 3H1JE 3VMHD 1FQTA 4HM3A 3L72E 1NDOA 3H1KE 3GKEA 2QJKC 4QDDA 2CKFA 3GZYA 1O7NA 2E4QA 2YVJB 5KLVE 4HM6A 4NBGD 4H13D 2HMLA 1ULJA 3FOUA 3N0QA 2YFIA 1L0LE 1EG9A 2XSOA 2NUKA 4QDFB 3GOBA 1O7MA 2BCCE 2NVFA 4P1BH 2HMKA 2ZT9D 4HM4A 2GBXA 2ZYLA 2GBWA 1UUVA 1RFSA 1SQXE 3L70E 5HL4A 4QUPA 4QCKA 3GL0A 4NBFD 1NYKA 2A06E 3GTEA 3VCAA 3D89A 1EZVE 4U3FE 3GCEA 1BE3E 4NB9D 1O7HA 2E74D
chains in the Genus database with same CATH topology
2BMOA 3BCCE 3GL2A 2IBZE 4HM8A 1O7GA 4NBBD 5BOKA 3DQYA 3GTSA 3H1LE 2JZAA 2XR8A 1ULIA 1PPJE 2I7FA 2YFJA 2HMMA 3VMID 4QDFA 1NTKE 1BCCE 4HM0A 4HM1A 4NBED 4HJLA 4OGQD 1WQLA 1VM9A 2HMOA 3L73E 4PV1D 1NU1E 4HKVA 3VCPA 1P84E 2NVEA 1NTZE 2QPZA 1SQBE 1VCKA 4QUQA 5CXMA 4HM7A 2QJYC 1O7PA 2HMNA 3AZCA 4H0LD 2B24A 1ZRTE 2NVGA 4QDCA 4AAYB 4NBAD 2JO6A 1L0NE 3GZXA 2E75D 1KYOE 1PP9E 3L75E 2D2CD 4HM2A 4NBCD 4EMJB 2NUMA 2HMJA 2FYUE 2E76D 3H1IE 1G8JB 2NWFA 4NBHD 2YFLA 4PD4E 3TGUE 3EN1A 3CWBE 4AIVA 5AEUA 5AEWA 2FYNC 3EQQA 3GB4A 3C0DA 1SQVE 3CXHE 2DE5D 1Q90C 4QURA 3L74E 3CX5E 2BMQA 3L71E 1NTME 1SJGA 1SQQE 2YIUC 2BMRA 2B1XA 4NB8D 2E4PA 2Q3WA 1SQPE 1RIEA 2DE6D 1KB9E 2XSHA 2QJPC 2DE7D 4P1CH 1UUWA 1O7WA 4H44D 1VF5D 4HM5A 3VMGD 1G8KB 5KLIC 1JM1A 4NBDD 3H1HE 2XRXA 5KKZC 3H1JE 3VMHD 1FQTA 4HM3A 3L72E 1NDOA 3H1KE 3GKEA 2QJKC 4QDDA 2CKFA 3GZYA 1O7NA 2E4QA 2YVJB 5KLVE 4HM6A 4NBGD 4H13D 2HMLA 1ULJA 3FOUA 3N0QA 2YFIA 1L0LE 1EG9A 2XSOA 2NUKA 4QDFB 3GOBA 1O7MA 2BCCE 2NVFA 4P1BH 2HMKA 2ZT9D 4HM4A 2GBXA 2ZYLA 2GBWA 1UUVA 1RFSA 1SQXE 3L70E 5HL4A 4QUPA 4QCKA 3GL0A 4NBFD 1NYKA 2A06E 3GTEA 3VCAA 3D89A 1EZVE 4U3FE 3GCEA 1BE3E 4NB9D 1O7HA 2E74D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BMO A;  3BCC E;  3GL2 A;  2IBZ E;  4HM8 A;  1O7G A;  4NBB D;  5BOK A;  3DQY A;  3GTS A;  3H1L E;  2JZA A;  2XR8 A;  1ULI A;  1PPJ E;  2I7F A;  2YFJ A;  2HMM A;  3VMI D;  4QDF A;  1NTK E;  1BCC E;  4HM0 A;  4HM1 A;  4NBE D;  4HJL A;  4OGQ D;  1WQL A;  1VM9 A;  2HMO A;  3L73 E;  4PV1 D;  1NU1 E;  4HKV A;  3VCP A;  1P84 E;  2NVE A;  1NTZ E;  2QPZ A;  1SQB E;  1VCK A;  4QUQ A;  5CXM A;  4HM7 A;  2QJY C;  1O7P A;  2HMN A;  3AZC A;  4H0L D;  2B24 A;  1ZRT E;  2NVG A;  4QDC A;  4AAY B;  4NBA D;  2JO6 A;  1L0N E;  3GZX A;  2E75 D;  1KYO E;  1PP9 E;  3L75 E;  2D2C D;  4HM2 A;  4NBC D;  4EMJ B;  2NUM A;  2HMJ A;  2FYU E;  2E76 D;  3H1I E;  1G8J B;  2NWF A;  4NBH D;  2YFL A;  4PD4 E;  3TGU E;  3EN1 A;  3CWB E;  4AIV A;  5AEU A;  5AEW A;  2FYN C;  3EQQ A;  3GB4 A;  3C0D A;  1SQV E;  3CXH E;  2DE5 D;  1Q90 C;  4QUR A;  3L74 E;  3CX5 E;  2BMQ A;  3L71 E;  1NTM E;  1SJG A;  1SQQ E;  2YIU C;  2BMR A;  2B1X A;  4NB8 D;  2E4P A;  2Q3W A;  1SQP E;  1RIE A;  2DE6 D;  1KB9 E;  2XSH A;  2QJP C;  2DE7 D;  4P1C H;  1UUW A;  1O7W A;  4H44 D;  1VF5 D;  4HM5 A;  3VMG D;  1G8K B;  5KLI C;  1JM1 A;  4NBD D;  3H1H E;  2XRX A;  5KKZ C;  3H1J E;  3VMH D;  1FQT A;  4HM3 A;  3L72 E;  1NDO A;  3H1K E;  3GKE A;  2QJK C;  4QDD A;  2CKF A;  3GZY A;  1O7N A;  2E4Q A;  2YVJ B;  5KLV E;  4HM6 A;  4NBG D;  4H13 D;  2HML A;  1ULJ A;  3FOU A;  3N0Q A;  2YFI A;  1L0L E;  1EG9 A;  2XSO A;  2NUK A;  4QDF B;  3GOB A;  1O7M A;  2BCC E;  2NVF A;  4P1B H;  2HMK A;  2ZT9 D;  4HM4 A;  2GBX A;  2ZYL A;  2GBW A;  1UUV A;  1RFS A;  1SQX E;  3L70 E;  5HL4 A;  4QUP A;  4QCK A;  3GL0 A;  4NBF D;  1NYK A;  2A06 E;  3GTE A;  3VCA A;  3D89 A;  1EZV E;  4U3F E;  3GCE A;  1BE3 E;  4NB9 D;  1O7H A;  2E74 D; 
#chains in the Genus database with same CATH topology
 2BMO A;  3BCC E;  3GL2 A;  2IBZ E;  4HM8 A;  1O7G A;  4NBB D;  5BOK A;  3DQY A;  3GTS A;  3H1L E;  2JZA A;  2XR8 A;  1ULI A;  1PPJ E;  2I7F A;  2YFJ A;  2HMM A;  3VMI D;  4QDF A;  1NTK E;  1BCC E;  4HM0 A;  4HM1 A;  4NBE D;  4HJL A;  4OGQ D;  1WQL A;  1VM9 A;  2HMO A;  3L73 E;  4PV1 D;  1NU1 E;  4HKV A;  3VCP A;  1P84 E;  2NVE A;  1NTZ E;  2QPZ A;  1SQB E;  1VCK A;  4QUQ A;  5CXM A;  4HM7 A;  2QJY C;  1O7P A;  2HMN A;  3AZC A;  4H0L D;  2B24 A;  1ZRT E;  2NVG A;  4QDC A;  4AAY B;  4NBA D;  2JO6 A;  1L0N E;  3GZX A;  2E75 D;  1KYO E;  1PP9 E;  3L75 E;  2D2C D;  4HM2 A;  4NBC D;  4EMJ B;  2NUM A;  2HMJ A;  2FYU E;  2E76 D;  3H1I E;  1G8J B;  2NWF A;  4NBH D;  2YFL A;  4PD4 E;  3TGU E;  3EN1 A;  3CWB E;  4AIV A;  5AEU A;  5AEW A;  2FYN C;  3EQQ A;  3GB4 A;  3C0D A;  1SQV E;  3CXH E;  2DE5 D;  1Q90 C;  4QUR A;  3L74 E;  3CX5 E;  2BMQ A;  3L71 E;  1NTM E;  1SJG A;  1SQQ E;  2YIU C;  2BMR A;  2B1X A;  4NB8 D;  2E4P A;  2Q3W A;  1SQP E;  1RIE A;  2DE6 D;  1KB9 E;  2XSH A;  2QJP C;  2DE7 D;  4P1C H;  1UUW A;  1O7W A;  4H44 D;  1VF5 D;  4HM5 A;  3VMG D;  1G8K B;  5KLI C;  1JM1 A;  4NBD D;  3H1H E;  2XRX A;  5KKZ C;  3H1J E;  3VMH D;  1FQT A;  4HM3 A;  3L72 E;  1NDO A;  3H1K E;  3GKE A;  2QJK C;  4QDD A;  2CKF A;  3GZY A;  1O7N A;  2E4Q A;  2YVJ B;  5KLV E;  4HM6 A;  4NBG D;  4H13 D;  2HML A;  1ULJ A;  3FOU A;  3N0Q A;  2YFI A;  1L0L E;  1EG9 A;  2XSO A;  2NUK A;  4QDF B;  3GOB A;  1O7M A;  2BCC E;  2NVF A;  4P1B H;  2HMK A;  2ZT9 D;  4HM4 A;  2GBX A;  2ZYL A;  2GBW A;  1UUV A;  1RFS A;  1SQX E;  3L70 E;  5HL4 A;  4QUP A;  4QCK A;  3GL0 A;  4NBF D;  1NYK A;  2A06 E;  3GTE A;  3VCA A;  3D89 A;  1EZV E;  4U3F E;  3GCE A;  1BE3 E;  4NB9 D;  1O7H A;  2E74 D; 
#chains in the Genus database with same CATH homology
 2BMO A;  3BCC E;  3GL2 A;  2IBZ E;  4HM8 A;  1O7G A;  4NBB D;  5BOK A;  3DQY A;  3GTS A;  3H1L E;  2JZA A;  2XR8 A;  1ULI A;  1PPJ E;  2I7F A;  2YFJ A;  2HMM A;  3VMI D;  4QDF A;  1NTK E;  1BCC E;  4HM0 A;  4HM1 A;  4NBE D;  4HJL A;  4OGQ D;  1WQL A;  1VM9 A;  2HMO A;  3L73 E;  4PV1 D;  1NU1 E;  4HKV A;  3VCP A;  1P84 E;  2NVE A;  1NTZ E;  2QPZ A;  1SQB E;  1VCK A;  4QUQ A;  5CXM A;  4HM7 A;  2QJY C;  1O7P A;  2HMN A;  3AZC A;  4H0L D;  2B24 A;  1ZRT E;  2NVG A;  4QDC A;  4AAY B;  4NBA D;  2JO6 A;  1L0N E;  3GZX A;  2E75 D;  1KYO E;  1PP9 E;  3L75 E;  2D2C D;  4HM2 A;  4NBC D;  4EMJ B;  2NUM A;  2HMJ A;  2FYU E;  2E76 D;  3H1I E;  1G8J B;  2NWF A;  4NBH D;  2YFL A;  4PD4 E;  3TGU E;  3EN1 A;  3CWB E;  4AIV A;  5AEU A;  5AEW A;  2FYN C;  3EQQ A;  3GB4 A;  3C0D A;  1SQV E;  3CXH E;  2DE5 D;  1Q90 C;  4QUR A;  3L74 E;  3CX5 E;  2BMQ A;  3L71 E;  1NTM E;  1SJG A;  1SQQ E;  2YIU C;  2BMR A;  2B1X A;  4NB8 D;  2E4P A;  2Q3W A;  1SQP E;  1RIE A;  2DE6 D;  1KB9 E;  2XSH A;  2QJP C;  2DE7 D;  4P1C H;  1UUW A;  1O7W A;  4H44 D;  1VF5 D;  4HM5 A;  3VMG D;  1G8K B;  5KLI C;  1JM1 A;  4NBD D;  3H1H E;  2XRX A;  5KKZ C;  3H1J E;  3VMH D;  1FQT A;  4HM3 A;  3L72 E;  1NDO A;  3H1K E;  3GKE A;  2QJK C;  4QDD A;  2CKF A;  3GZY A;  1O7N A;  2E4Q A;  2YVJ B;  5KLV E;  4HM6 A;  4NBG D;  4H13 D;  2HML A;  1ULJ A;  3FOU A;  3N0Q A;  2YFI A;  1L0L E;  1EG9 A;  2XSO A;  2NUK A;  4QDF B;  3GOB A;  1O7M A;  2BCC E;  2NVF A;  4P1B H;  2HMK A;  2ZT9 D;  4HM4 A;  2GBX A;  2ZYL A;  2GBW A;  1UUV A;  1RFS A;  1SQX E;  3L70 E;  5HL4 A;  4QUP A;  4QCK A;  3GL0 A;  4NBF D;  1NYK A;  2A06 E;  3GTE A;  3VCA A;  3D89 A;  1EZV E;  4U3F E;  3GCE A;  1BE3 E;  4NB9 D;  1O7H A;  2E74 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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