4HM8A

Naphthalene 1,2-dioxygenase bound to thioanisole
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
446
structure length
446
Chain Sequence
b'MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
publication title Naphthalene 1,2-Dioxygenase bound to thioanisole
rcsb
source organism Pseudomonas sp. c18
molecule tags Oxidoreductase/oxidoreductase inhibitor
total genus 160
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm8A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm8A01
1SQBE 1FQTA 1EG9A 4HM4A 4QUPA 2DE7D 3GKEA 3L71E 5BOKA 2YFIA 1VF5D 3GB4A 2YIUC 2JZAA 1KB9E 1ZRTE 2HMLA 3GTSA 1NTKE 1Z02A 2BMOA 1RIEA 2QPZA 2ZYLA 4NBAD 4HM5A 1SQPE 2HMMA 4PD4E 1PPJE 4QDCA 2B24A 3VCPA 2NUMA 3H1LE 4EMJB 4NBHA 3H1IE 2NVGA 5KKZC 2JO6A 1WW9A 3GL2A 3H1JE 3EQQA 3FOUA 4AAYB 1KYOE 2IBZE 2DE7A 2BMQA 2E4PA 4NBCD 2BMRA 1EZVE 1NYKA 5AEUA 2NWFA 2E74D 2XSHA 4QUQA 1O7MA 1L0NE 1NU1E 2I7FA 3CX5E 1VM9A 4H13D 4HM1A 3L70E 4HM6A 3GCFA 1VCKA 3TGUE 2E75D 4HM3A 2GBXA 1NTZE 4NB8D 2XRXA 4HJLA 4AIVA 2B1XA 3H1KE 2NVEA 1WQLA 3VMGD 4NBDD 3AZCA 4PV1D 1O7HA 4NBCA 2DE5D 4OGQD 3D89A 4HKVA 4HM8A 3VMID 1JM1A 1G8KB 1G8JB 4HM0A 1NTME 4NB9D 5AEWA 4H44D 1O7WA 3CWBE 4U3FE 2XSOA 2ZT9D 3BCCE 4QCKA 4HM7A 2FYNC 1UUVA 2BCCE 2YVJB 2HMOA 4QDFA 2YFJA 4H0LD 5HL4A 4NBAA 3VCAA 4QDFB 2XR8A 5KLVE 3C0DA 4NBBD 3GCEA 3DQYA 2HMNA 3VMGA 1O7NA 1PP9E 2DE5A 1SQVE 3N0QA 5KLIC 1Q90C 4NBFD 4NB9A 3GKQA 1L0LE 1P84E 1Z01A 1BCCE 2Q3WA 4NBED 2QJKC 1O7GA 3CXHE 2E4QA 3GZXA 3H1HE 4NBGD 3GZYA 2GBWA 2E76D 2NUKA 4P1CH 1UUWA 2DE6D 3VMHD 1SJGA 4NBBA 2CKFA 1RFSA 5CXMA 1SQXE 1O7PA 1NDOA 2A06E 4HM2A 1SQQE 2FYUE 3GTEA 4NB8A 3L73E 3GOBA 1ULIA 3L72E 4QURA 4NBFA 3GL0A 3L74E 4NBDA 1ULJA 3EN1A 3L75E 2YFLA 1BE3E 4P1BH 4NBEA 3VMIA 2QJPC 2HMJA 4NBHD 4NBGA 4QDDA 2QJYC 1Z03A 2D2CD 2HMKA 3VMHA 2DE6A 2NVFA
chains in the Genus database with same CATH superfamily
1SQBE 1FQTA 1EG9A 4HM4A 4QUPA 2DE7D 3GKEA 3L71E 5BOKA 2YFIA 1VF5D 3GB4A 2YIUC 2JZAA 1KB9E 1ZRTE 2HMLA 3GTSA 1NTKE 1Z02A 2BMOA 1RIEA 2QPZA 2ZYLA 4NBAD 4HM5A 1SQPE 2HMMA 4PD4E 1PPJE 4QDCA 2B24A 3VCPA 2NUMA 3H1LE 4EMJB 4NBHA 3H1IE 2NVGA 5KKZC 2JO6A 1WW9A 3GL2A 3H1JE 3EQQA 3FOUA 4AAYB 1KYOE 2IBZE 2DE7A 2BMQA 2E4PA 4NBCD 2BMRA 1EZVE 1NYKA 5AEUA 2NWFA 2E74D 2XSHA 4QUQA 1O7MA 1L0NE 1NU1E 2I7FA 3CX5E 1VM9A 4H13D 4HM1A 3L70E 4HM6A 3GCFA 1VCKA 3TGUE 2E75D 4HM3A 2GBXA 1NTZE 4NB8D 2XRXA 4HJLA 4AIVA 2B1XA 3H1KE 2NVEA 1WQLA 3VMGD 4NBDD 3AZCA 4PV1D 1O7HA 4NBCA 2DE5D 4OGQD 3D89A 4HKVA 4HM8A 3VMID 1JM1A 1G8KB 1G8JB 4HM0A 1NTME 4NB9D 5AEWA 4H44D 1O7WA 3CWBE 4U3FE 2XSOA 2ZT9D 3BCCE 4QCKA 4HM7A 2FYNC 1UUVA 2BCCE 2YVJB 2HMOA 4QDFA 2YFJA 4H0LD 5HL4A 4NBAA 3VCAA 4QDFB 2XR8A 5KLVE 3C0DA 4NBBD 3GCEA 3DQYA 2HMNA 3VMGA 1O7NA 1PP9E 2DE5A 1SQVE 3N0QA 5KLIC 1Q90C 4NBFD 4NB9A 3GKQA 1L0LE 1P84E 1Z01A 1BCCE 2Q3WA 4NBED 2QJKC 1O7GA 3CXHE 2E4QA 3GZXA 3H1HE 4NBGD 3GZYA 2GBWA 2E76D 2NUKA 4P1CH 1UUWA 2DE6D 3VMHD 1SJGA 4NBBA 2CKFA 1RFSA 5CXMA 1SQXE 1O7PA 1NDOA 2A06E 4HM2A 1SQQE 2FYUE 3GTEA 4NB8A 3L73E 3GOBA 1ULIA 3L72E 4QURA 4NBFA 3GL0A 3L74E 4NBDA 1ULJA 3EN1A 3L75E 2YFLA 1BE3E 4P1BH 4NBEA 3VMIA 2QJPC 2HMJA 4NBHD 4NBGA 4QDDA 2QJYC 1Z03A 2D2CD 2HMKA 3VMHA 2DE6A 2NVFA
chains in the Genus database with same CATH topology
1SQBE 1FQTA 1EG9A 4HM4A 4QUPA 2DE7D 3GKEA 3L71E 5BOKA 2YFIA 1VF5D 3GB4A 2YIUC 2JZAA 1KB9E 1ZRTE 2HMLA 3GTSA 1NTKE 1Z02A 2BMOA 1RIEA 2QPZA 2ZYLA 4NBAD 4HM5A 1SQPE 2HMMA 4PD4E 1PPJE 4QDCA 2B24A 3VCPA 2NUMA 3H1LE 4EMJB 4NBHA 3H1IE 2NVGA 5KKZC 2JO6A 1WW9A 3GL2A 3H1JE 3EQQA 3FOUA 4AAYB 1KYOE 2IBZE 2DE7A 2BMQA 2E4PA 4NBCD 2BMRA 1EZVE 1NYKA 5AEUA 2NWFA 2E74D 2XSHA 4QUQA 1O7MA 1L0NE 1NU1E 2I7FA 3CX5E 1VM9A 4H13D 4HM1A 3L70E 4HM6A 3GCFA 1VCKA 3TGUE 2E75D 4HM3A 2GBXA 1NTZE 4NB8D 2XRXA 4HJLA 4AIVA 2B1XA 3H1KE 2NVEA 1WQLA 3VMGD 4NBDD 3AZCA 4PV1D 1O7HA 4NBCA 2DE5D 4OGQD 3D89A 4HKVA 4HM8A 3VMID 1JM1A 1G8KB 1G8JB 4HM0A 1NTME 4NB9D 5AEWA 4H44D 1O7WA 3CWBE 4U3FE 2XSOA 2ZT9D 3BCCE 4QCKA 4HM7A 2FYNC 1UUVA 2BCCE 2YVJB 2HMOA 4QDFA 2YFJA 4H0LD 5HL4A 4NBAA 3VCAA 4QDFB 2XR8A 5KLVE 3C0DA 4NBBD 3GCEA 3DQYA 2HMNA 3VMGA 1O7NA 1PP9E 2DE5A 1SQVE 3N0QA 5KLIC 1Q90C 4NBFD 4NB9A 3GKQA 1L0LE 1P84E 1Z01A 1BCCE 2Q3WA 4NBED 2QJKC 1O7GA 3CXHE 2E4QA 3GZXA 3H1HE 4NBGD 3GZYA 2GBWA 2E76D 2NUKA 4P1CH 1UUWA 2DE6D 3VMHD 1SJGA 4NBBA 2CKFA 1RFSA 5CXMA 1SQXE 1O7PA 1NDOA 2A06E 4HM2A 1SQQE 2FYUE 3GTEA 4NB8A 3L73E 3GOBA 1ULIA 3L72E 4QURA 4NBFA 3GL0A 3L74E 4NBDA 1ULJA 3EN1A 3L75E 2YFLA 1BE3E 4P1BH 4NBEA 3VMIA 2QJPC 2HMJA 4NBHD 4NBGA 4QDDA 2QJYC 1Z03A 2D2CD 2HMKA 3VMHA 2DE6A 2NVFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SQB E;  1FQT A;  1EG9 A;  4HM4 A;  4QUP A;  2DE7 D;  3GKE A;  3L71 E;  5BOK A;  2YFI A;  1VF5 D;  3GB4 A;  2YIU C;  2JZA A;  1KB9 E;  1ZRT E;  2HML A;  3GTS A;  1NTK E;  1Z02 A;  2BMO A;  1RIE A;  2QPZ A;  2ZYL A;  4NBA D;  4HM5 A;  1SQP E;  2HMM A;  4PD4 E;  1PPJ E;  4QDC A;  2B24 A;  3VCP A;  2NUM A;  3H1L E;  4EMJ B;  4NBH A;  3H1I E;  2NVG A;  5KKZ C;  2JO6 A;  1WW9 A;  3GL2 A;  3H1J E;  3EQQ A;  3FOU A;  4AAY B;  1KYO E;  2IBZ E;  2DE7 A;  2BMQ A;  2E4P A;  4NBC D;  2BMR A;  1EZV E;  1NYK A;  5AEU A;  2NWF A;  2E74 D;  2XSH A;  4QUQ A;  1O7M A;  1L0N E;  1NU1 E;  2I7F A;  3CX5 E;  1VM9 A;  4H13 D;  4HM1 A;  3L70 E;  4HM6 A;  3GCF A;  1VCK A;  3TGU E;  2E75 D;  4HM3 A;  2GBX A;  1NTZ E;  4NB8 D;  2XRX A;  4HJL A;  4AIV A;  2B1X A;  3H1K E;  2NVE A;  1WQL A;  3VMG D;  4NBD D;  3AZC A;  4PV1 D;  1O7H A;  4NBC A;  2DE5 D;  4OGQ D;  3D89 A;  4HKV A;  4HM8 A;  3VMI D;  1JM1 A;  1G8K B;  1G8J B;  4HM0 A;  1NTM E;  4NB9 D;  5AEW A;  4H44 D;  1O7W A;  3CWB E;  4U3F E;  2XSO A;  2ZT9 D;  3BCC E;  4QCK A;  4HM7 A;  2FYN C;  1UUV A;  2BCC E;  2YVJ B;  2HMO A;  4QDF A;  2YFJ A;  4H0L D;  5HL4 A;  4NBA A;  3VCA A;  4QDF B;  2XR8 A;  5KLV E;  3C0D A;  4NBB D;  3GCE A;  3DQY A;  2HMN A;  3VMG A;  1O7N A;  1PP9 E;  2DE5 A;  1SQV E;  3N0Q A;  5KLI C;  1Q90 C;  4NBF D;  4NB9 A;  3GKQ A;  1L0L E;  1P84 E;  1Z01 A;  1BCC E;  2Q3W A;  4NBE D;  2QJK C;  1O7G A;  3CXH E;  2E4Q A;  3GZX A;  3H1H E;  4NBG D;  3GZY A;  2GBW A;  2E76 D;  2NUK A;  4P1C H;  1UUW A;  2DE6 D;  3VMH D;  1SJG A;  4NBB A;  2CKF A;  1RFS A;  5CXM A;  1SQX E;  1O7P A;  1NDO A;  2A06 E;  4HM2 A;  1SQQ E;  2FYU E;  3GTE A;  4NB8 A;  3L73 E;  3GOB A;  1ULI A;  3L72 E;  4QUR A;  4NBF A;  3GL0 A;  3L74 E;  4NBD A;  1ULJ A;  3EN1 A;  3L75 E;  2YFL A;  1BE3 E;  4P1B H;  4NBE A;  3VMI A;  2QJP C;  2HMJ A;  4NBH D;  4NBG A;  4QDD A;  2QJY C;  1Z03 A;  2D2C D;  2HMK A;  3VMH A;  2DE6 A;  2NVF A; 
#chains in the Genus database with same CATH topology
 1SQB E;  1FQT A;  1EG9 A;  4HM4 A;  4QUP A;  2DE7 D;  3GKE A;  3L71 E;  5BOK A;  2YFI A;  1VF5 D;  3GB4 A;  2YIU C;  2JZA A;  1KB9 E;  1ZRT E;  2HML A;  3GTS A;  1NTK E;  1Z02 A;  2BMO A;  1RIE A;  2QPZ A;  2ZYL A;  4NBA D;  4HM5 A;  1SQP E;  2HMM A;  4PD4 E;  1PPJ E;  4QDC A;  2B24 A;  3VCP A;  2NUM A;  3H1L E;  4EMJ B;  4NBH A;  3H1I E;  2NVG A;  5KKZ C;  2JO6 A;  1WW9 A;  3GL2 A;  3H1J E;  3EQQ A;  3FOU A;  4AAY B;  1KYO E;  2IBZ E;  2DE7 A;  2BMQ A;  2E4P A;  4NBC D;  2BMR A;  1EZV E;  1NYK A;  5AEU A;  2NWF A;  2E74 D;  2XSH A;  4QUQ A;  1O7M A;  1L0N E;  1NU1 E;  2I7F A;  3CX5 E;  1VM9 A;  4H13 D;  4HM1 A;  3L70 E;  4HM6 A;  3GCF A;  1VCK A;  3TGU E;  2E75 D;  4HM3 A;  2GBX A;  1NTZ E;  4NB8 D;  2XRX A;  4HJL A;  4AIV A;  2B1X A;  3H1K E;  2NVE A;  1WQL A;  3VMG D;  4NBD D;  3AZC A;  4PV1 D;  1O7H A;  4NBC A;  2DE5 D;  4OGQ D;  3D89 A;  4HKV A;  4HM8 A;  3VMI D;  1JM1 A;  1G8K B;  1G8J B;  4HM0 A;  1NTM E;  4NB9 D;  5AEW A;  4H44 D;  1O7W A;  3CWB E;  4U3F E;  2XSO A;  2ZT9 D;  3BCC E;  4QCK A;  4HM7 A;  2FYN C;  1UUV A;  2BCC E;  2YVJ B;  2HMO A;  4QDF A;  2YFJ A;  4H0L D;  5HL4 A;  4NBA A;  3VCA A;  4QDF B;  2XR8 A;  5KLV E;  3C0D A;  4NBB D;  3GCE A;  3DQY A;  2HMN A;  3VMG A;  1O7N A;  1PP9 E;  2DE5 A;  1SQV E;  3N0Q A;  5KLI C;  1Q90 C;  4NBF D;  4NB9 A;  3GKQ A;  1L0L E;  1P84 E;  1Z01 A;  1BCC E;  2Q3W A;  4NBE D;  2QJK C;  1O7G A;  3CXH E;  2E4Q A;  3GZX A;  3H1H E;  4NBG D;  3GZY A;  2GBW A;  2E76 D;  2NUK A;  4P1C H;  1UUW A;  2DE6 D;  3VMH D;  1SJG A;  4NBB A;  2CKF A;  1RFS A;  5CXM A;  1SQX E;  1O7P A;  1NDO A;  2A06 E;  4HM2 A;  1SQQ E;  2FYU E;  3GTE A;  4NB8 A;  3L73 E;  3GOB A;  1ULI A;  3L72 E;  4QUR A;  4NBF A;  3GL0 A;  3L74 E;  4NBD A;  1ULJ A;  3EN1 A;  3L75 E;  2YFL A;  1BE3 E;  4P1B H;  4NBE A;  3VMI A;  2QJP C;  2HMJ A;  4NBH D;  4NBG A;  4QDD A;  2QJY C;  1Z03 A;  2D2C D;  2HMK A;  3VMH A;  2DE6 A;  2NVF A; 
#chains in the Genus database with same CATH homology
 1SQB E;  1FQT A;  1EG9 A;  4HM4 A;  4QUP A;  2DE7 D;  3GKE A;  3L71 E;  5BOK A;  2YFI A;  1VF5 D;  3GB4 A;  2YIU C;  2JZA A;  1KB9 E;  1ZRT E;  2HML A;  3GTS A;  1NTK E;  1Z02 A;  2BMO A;  1RIE A;  2QPZ A;  2ZYL A;  4NBA D;  4HM5 A;  1SQP E;  2HMM A;  4PD4 E;  1PPJ E;  4QDC A;  2B24 A;  3VCP A;  2NUM A;  3H1L E;  4EMJ B;  4NBH A;  3H1I E;  2NVG A;  5KKZ C;  2JO6 A;  1WW9 A;  3GL2 A;  3H1J E;  3EQQ A;  3FOU A;  4AAY B;  1KYO E;  2IBZ E;  2DE7 A;  2BMQ A;  2E4P A;  4NBC D;  2BMR A;  1EZV E;  1NYK A;  5AEU A;  2NWF A;  2E74 D;  2XSH A;  4QUQ A;  1O7M A;  1L0N E;  1NU1 E;  2I7F A;  3CX5 E;  1VM9 A;  4H13 D;  4HM1 A;  3L70 E;  4HM6 A;  3GCF A;  1VCK A;  3TGU E;  2E75 D;  4HM3 A;  2GBX A;  1NTZ E;  4NB8 D;  2XRX A;  4HJL A;  4AIV A;  2B1X A;  3H1K E;  2NVE A;  1WQL A;  3VMG D;  4NBD D;  3AZC A;  4PV1 D;  1O7H A;  4NBC A;  2DE5 D;  4OGQ D;  3D89 A;  4HKV A;  4HM8 A;  3VMI D;  1JM1 A;  1G8K B;  1G8J B;  4HM0 A;  1NTM E;  4NB9 D;  5AEW A;  4H44 D;  1O7W A;  3CWB E;  4U3F E;  2XSO A;  2ZT9 D;  3BCC E;  4QCK A;  4HM7 A;  2FYN C;  1UUV A;  2BCC E;  2YVJ B;  2HMO A;  4QDF A;  2YFJ A;  4H0L D;  5HL4 A;  4NBA A;  3VCA A;  4QDF B;  2XR8 A;  5KLV E;  3C0D A;  4NBB D;  3GCE A;  3DQY A;  2HMN A;  3VMG A;  1O7N A;  1PP9 E;  2DE5 A;  1SQV E;  3N0Q A;  5KLI C;  1Q90 C;  4NBF D;  4NB9 A;  3GKQ A;  1L0L E;  1P84 E;  1Z01 A;  1BCC E;  2Q3W A;  4NBE D;  2QJK C;  1O7G A;  3CXH E;  2E4Q A;  3GZX A;  3H1H E;  4NBG D;  3GZY A;  2GBW A;  2E76 D;  2NUK A;  4P1C H;  1UUW A;  2DE6 D;  3VMH D;  1SJG A;  4NBB A;  2CKF A;  1RFS A;  5CXM A;  1SQX E;  1O7P A;  1NDO A;  2A06 E;  4HM2 A;  1SQQ E;  2FYU E;  3GTE A;  4NB8 A;  3L73 E;  3GOB A;  1ULI A;  3L72 E;  4QUR A;  4NBF A;  3GL0 A;  3L74 E;  4NBD A;  1ULJ A;  3EN1 A;  3L75 E;  2YFL A;  1BE3 E;  4P1B H;  4NBE A;  3VMI A;  2QJP C;  2HMJ A;  4NBH D;  4NBG A;  4QDD A;  2QJY C;  1Z03 A;  2D2C D;  2HMK A;  3VMH A;  2DE6 A;  2NVF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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