4HM8A

Naphthalene 1,2-dioxygenase bound to thioanisole
Total Genus 160
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
publication title Naphthalene 1,2-Dioxygenase bound to thioanisole
rcsb
source organism Pseudomonas sp. c18
molecule tags Oxidoreductase/oxidoreductase inhibitor
total genus 160
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm8A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm8A01
1G8KB 2E75D 2E76D 2DE5A 1P84E 2QPZA 1ULIA 1UUWA 2BMQA 1ZRTE 4QCKA 4NBDA 1SQXE 2NUMA 2QJYC 3L74E 4HM6A 1O7HA 2E74D 4NBED 4PV1D 4AIVA 2XSOA 1PP9E 4H44D 2GBWA 2DE6A 3VMHA 1SQQE 3H1KE 3EN1A 3EQQA 3GOBA 3GTEA 2JO6A 4NB8D 2DE7D 4QDCA 1UUVA 2A06E 1G8JB 1PPJE 4NBCA 4P1CH 4NBEA 4U3FE 2D2CD 3GKQA 3GL0A 4HM7A 3VMIA 2NWFA 1SQVE 4NBBA 2HMKA 3CXHE 2FYUE 1WQLA 3GB4A 2BCCE 3GZYA 2HMMA 2YFIA 4HM5A 2B24A 1VCKA 2DE7A 2I7FA 2JZAA 4HKVA 1SJGA 1SQBE 3D89A 1JM1A 4H13D 3H1HE 4NBFD 4NBAD 3L73E 2FYNC 3H1IE 4HM2A 1VF5D 4NBHD 5KKZC 2ZT9D 4HM4A 1RFSA 3GZXA 4H0LD 4HJLA 4PD4E 2NVFA 2QJPC 3VCPA 4QUQA 3H1JE 5BOKA 2HMJA 2Q3WA 4NBGD 3L71E 3VCAA 3GTSA 3CWBE 5CXMA 5KLVE 2GBXA 1EG9A 4HM0A 2NUKA 2NVEA 3TGUE 4NB8A 3GCEA 4EMJB 3BCCE 2B1XA 2BMOA 1NTKE 3CX5E 1NYKA 3VMGD 1KB9E 4NBGA 3GCFA 3FOUA 4NB9D 2HMOA 1NTZE 2YFLA 3GKEA 1O7NA 4NBDD 2NVGA 2YVJB 2IBZE 1ULJA 1NTME 2E4PA 1Z01A 1KYOE 1VM9A 3DQYA 2CKFA 3VMHD 2DE6D 5HL4A 3AZCA 3L70E 1Z03A 1O7GA 3VMGA 2YIUC 1L0LE 2QJKC 4NBFA 3N0QA 1BCCE 4NBAA 2ZYLA 4NB9A 5AEWA 4NBHA 3L72E 4NBCD 1BE3E 1EZVE 1NDOA 2XRXA 3L75E 4HM1A 1Z02A 3GL2A 3VMID 4NBBD 1Q90C 4QURA 2HMLA 1SQPE 4P1BH 1O7WA 4HM8A 1O7MA 3C0DA 1RIEA 2DE5D 4HM3A 4QDFA 4QUPA 2E4QA 1L0NE 2YFJA 2XSHA 4QDDA 3H1LE 5KLIC 4QDFB 2HMNA 4AAYB 4OGQD 5AEUA 1NU1E 1WW9A 1O7PA 1FQTA 2BMRA 2XR8A
chains in the Genus database with same CATH superfamily
1G8KB 2E75D 2E76D 2DE5A 1P84E 2QPZA 1ULIA 1UUWA 2BMQA 1ZRTE 4QCKA 4NBDA 1SQXE 2NUMA 2QJYC 3L74E 4HM6A 1O7HA 2E74D 4NBED 4PV1D 4AIVA 2XSOA 1PP9E 4H44D 2GBWA 2DE6A 3VMHA 1SQQE 3H1KE 3EN1A 3EQQA 3GOBA 3GTEA 2JO6A 4NB8D 2DE7D 4QDCA 1UUVA 2A06E 1G8JB 1PPJE 4NBCA 4P1CH 4NBEA 4U3FE 2D2CD 3GKQA 3GL0A 4HM7A 3VMIA 2NWFA 1SQVE 4NBBA 2HMKA 3CXHE 2FYUE 1WQLA 3GB4A 2BCCE 3GZYA 2HMMA 2YFIA 4HM5A 2B24A 1VCKA 2DE7A 2I7FA 2JZAA 4HKVA 1SJGA 1SQBE 3D89A 1JM1A 4H13D 3H1HE 4NBFD 4NBAD 3L73E 2FYNC 3H1IE 4HM2A 1VF5D 4NBHD 5KKZC 2ZT9D 4HM4A 1RFSA 3GZXA 4H0LD 4HJLA 4PD4E 2NVFA 2QJPC 3VCPA 4QUQA 3H1JE 5BOKA 2HMJA 2Q3WA 4NBGD 3L71E 3VCAA 3GTSA 3CWBE 5CXMA 5KLVE 2GBXA 1EG9A 4HM0A 2NUKA 2NVEA 3TGUE 4NB8A 3GCEA 4EMJB 3BCCE 2B1XA 2BMOA 1NTKE 3CX5E 1NYKA 3VMGD 1KB9E 4NBGA 3GCFA 3FOUA 4NB9D 2HMOA 1NTZE 2YFLA 3GKEA 1O7NA 4NBDD 2NVGA 2YVJB 2IBZE 1ULJA 1NTME 2E4PA 1Z01A 1KYOE 1VM9A 3DQYA 2CKFA 3VMHD 2DE6D 5HL4A 3AZCA 3L70E 1Z03A 1O7GA 3VMGA 2YIUC 1L0LE 2QJKC 4NBFA 3N0QA 1BCCE 4NBAA 2ZYLA 4NB9A 5AEWA 4NBHA 3L72E 4NBCD 1BE3E 1EZVE 1NDOA 2XRXA 3L75E 4HM1A 1Z02A 3GL2A 3VMID 4NBBD 1Q90C 4QURA 2HMLA 1SQPE 4P1BH 1O7WA 4HM8A 1O7MA 3C0DA 1RIEA 2DE5D 4HM3A 4QDFA 4QUPA 2E4QA 1L0NE 2YFJA 2XSHA 4QDDA 3H1LE 5KLIC 4QDFB 2HMNA 4AAYB 4OGQD 5AEUA 1NU1E 1WW9A 1O7PA 1FQTA 2BMRA 2XR8A
chains in the Genus database with same CATH topology
1G8KB 2E75D 2E76D 2DE5A 1P84E 2QPZA 1ULIA 1UUWA 2BMQA 1ZRTE 4QCKA 4NBDA 1SQXE 2NUMA 2QJYC 3L74E 4HM6A 1O7HA 2E74D 4NBED 4PV1D 4AIVA 2XSOA 1PP9E 4H44D 2GBWA 2DE6A 3VMHA 1SQQE 3H1KE 3EN1A 3EQQA 3GOBA 3GTEA 2JO6A 4NB8D 2DE7D 4QDCA 1UUVA 2A06E 1G8JB 1PPJE 4NBCA 4P1CH 4NBEA 4U3FE 2D2CD 3GKQA 3GL0A 4HM7A 3VMIA 2NWFA 1SQVE 4NBBA 2HMKA 3CXHE 2FYUE 1WQLA 3GB4A 2BCCE 3GZYA 2HMMA 2YFIA 4HM5A 2B24A 1VCKA 2DE7A 2I7FA 2JZAA 4HKVA 1SJGA 1SQBE 3D89A 1JM1A 4H13D 3H1HE 4NBFD 4NBAD 3L73E 2FYNC 3H1IE 4HM2A 1VF5D 4NBHD 5KKZC 2ZT9D 4HM4A 1RFSA 3GZXA 4H0LD 4HJLA 4PD4E 2NVFA 2QJPC 3VCPA 4QUQA 3H1JE 5BOKA 2HMJA 2Q3WA 4NBGD 3L71E 3VCAA 3GTSA 3CWBE 5CXMA 5KLVE 2GBXA 1EG9A 4HM0A 2NUKA 2NVEA 3TGUE 4NB8A 3GCEA 4EMJB 3BCCE 2B1XA 2BMOA 1NTKE 3CX5E 1NYKA 3VMGD 1KB9E 4NBGA 3GCFA 3FOUA 4NB9D 2HMOA 1NTZE 2YFLA 3GKEA 1O7NA 4NBDD 2NVGA 2YVJB 2IBZE 1ULJA 1NTME 2E4PA 1Z01A 1KYOE 1VM9A 3DQYA 2CKFA 3VMHD 2DE6D 5HL4A 3AZCA 3L70E 1Z03A 1O7GA 3VMGA 2YIUC 1L0LE 2QJKC 4NBFA 3N0QA 1BCCE 4NBAA 2ZYLA 4NB9A 5AEWA 4NBHA 3L72E 4NBCD 1BE3E 1EZVE 1NDOA 2XRXA 3L75E 4HM1A 1Z02A 3GL2A 3VMID 4NBBD 1Q90C 4QURA 2HMLA 1SQPE 4P1BH 1O7WA 4HM8A 1O7MA 3C0DA 1RIEA 2DE5D 4HM3A 4QDFA 4QUPA 2E4QA 1L0NE 2YFJA 2XSHA 4QDDA 3H1LE 5KLIC 4QDFB 2HMNA 4AAYB 4OGQD 5AEUA 1NU1E 1WW9A 1O7PA 1FQTA 2BMRA 2XR8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1G8K B;  2E75 D;  2E76 D;  2DE5 A;  1P84 E;  2QPZ A;  1ULI A;  1UUW A;  2BMQ A;  1ZRT E;  4QCK A;  4NBD A;  1SQX E;  2NUM A;  2QJY C;  3L74 E;  4HM6 A;  1O7H A;  2E74 D;  4NBE D;  4PV1 D;  4AIV A;  2XSO A;  1PP9 E;  4H44 D;  2GBW A;  2DE6 A;  3VMH A;  1SQQ E;  3H1K E;  3EN1 A;  3EQQ A;  3GOB A;  3GTE A;  2JO6 A;  4NB8 D;  2DE7 D;  4QDC A;  1UUV A;  2A06 E;  1G8J B;  1PPJ E;  4NBC A;  4P1C H;  4NBE A;  4U3F E;  2D2C D;  3GKQ A;  3GL0 A;  4HM7 A;  3VMI A;  2NWF A;  1SQV E;  4NBB A;  2HMK A;  3CXH E;  2FYU E;  1WQL A;  3GB4 A;  2BCC E;  3GZY A;  2HMM A;  2YFI A;  4HM5 A;  2B24 A;  1VCK A;  2DE7 A;  2I7F A;  2JZA A;  4HKV A;  1SJG A;  1SQB E;  3D89 A;  1JM1 A;  4H13 D;  3H1H E;  4NBF D;  4NBA D;  3L73 E;  2FYN C;  3H1I E;  4HM2 A;  1VF5 D;  4NBH D;  5KKZ C;  2ZT9 D;  4HM4 A;  1RFS A;  3GZX A;  4H0L D;  4HJL A;  4PD4 E;  2NVF A;  2QJP C;  3VCP A;  4QUQ A;  3H1J E;  5BOK A;  2HMJ A;  2Q3W A;  4NBG D;  3L71 E;  3VCA A;  3GTS A;  3CWB E;  5CXM A;  5KLV E;  2GBX A;  1EG9 A;  4HM0 A;  2NUK A;  2NVE A;  3TGU E;  4NB8 A;  3GCE A;  4EMJ B;  3BCC E;  2B1X A;  2BMO A;  1NTK E;  3CX5 E;  1NYK A;  3VMG D;  1KB9 E;  4NBG A;  3GCF A;  3FOU A;  4NB9 D;  2HMO A;  1NTZ E;  2YFL A;  3GKE A;  1O7N A;  4NBD D;  2NVG A;  2YVJ B;  2IBZ E;  1ULJ A;  1NTM E;  2E4P A;  1Z01 A;  1KYO E;  1VM9 A;  3DQY A;  2CKF A;  3VMH D;  2DE6 D;  5HL4 A;  3AZC A;  3L70 E;  1Z03 A;  1O7G A;  3VMG A;  2YIU C;  1L0L E;  2QJK C;  4NBF A;  3N0Q A;  1BCC E;  4NBA A;  2ZYL A;  4NB9 A;  5AEW A;  4NBH A;  3L72 E;  4NBC D;  1BE3 E;  1EZV E;  1NDO A;  2XRX A;  3L75 E;  4HM1 A;  1Z02 A;  3GL2 A;  3VMI D;  4NBB D;  1Q90 C;  4QUR A;  2HML A;  1SQP E;  4P1B H;  1O7W A;  4HM8 A;  1O7M A;  3C0D A;  1RIE A;  2DE5 D;  4HM3 A;  4QDF A;  4QUP A;  2E4Q A;  1L0N E;  2YFJ A;  2XSH A;  4QDD A;  3H1L E;  5KLI C;  4QDF B;  2HMN A;  4AAY B;  4OGQ D;  5AEU A;  1NU1 E;  1WW9 A;  1O7P A;  1FQT A;  2BMR A;  2XR8 A; 
#chains in the Genus database with same CATH topology
 1G8K B;  2E75 D;  2E76 D;  2DE5 A;  1P84 E;  2QPZ A;  1ULI A;  1UUW A;  2BMQ A;  1ZRT E;  4QCK A;  4NBD A;  1SQX E;  2NUM A;  2QJY C;  3L74 E;  4HM6 A;  1O7H A;  2E74 D;  4NBE D;  4PV1 D;  4AIV A;  2XSO A;  1PP9 E;  4H44 D;  2GBW A;  2DE6 A;  3VMH A;  1SQQ E;  3H1K E;  3EN1 A;  3EQQ A;  3GOB A;  3GTE A;  2JO6 A;  4NB8 D;  2DE7 D;  4QDC A;  1UUV A;  2A06 E;  1G8J B;  1PPJ E;  4NBC A;  4P1C H;  4NBE A;  4U3F E;  2D2C D;  3GKQ A;  3GL0 A;  4HM7 A;  3VMI A;  2NWF A;  1SQV E;  4NBB A;  2HMK A;  3CXH E;  2FYU E;  1WQL A;  3GB4 A;  2BCC E;  3GZY A;  2HMM A;  2YFI A;  4HM5 A;  2B24 A;  1VCK A;  2DE7 A;  2I7F A;  2JZA A;  4HKV A;  1SJG A;  1SQB E;  3D89 A;  1JM1 A;  4H13 D;  3H1H E;  4NBF D;  4NBA D;  3L73 E;  2FYN C;  3H1I E;  4HM2 A;  1VF5 D;  4NBH D;  5KKZ C;  2ZT9 D;  4HM4 A;  1RFS A;  3GZX A;  4H0L D;  4HJL A;  4PD4 E;  2NVF A;  2QJP C;  3VCP A;  4QUQ A;  3H1J E;  5BOK A;  2HMJ A;  2Q3W A;  4NBG D;  3L71 E;  3VCA A;  3GTS A;  3CWB E;  5CXM A;  5KLV E;  2GBX A;  1EG9 A;  4HM0 A;  2NUK A;  2NVE A;  3TGU E;  4NB8 A;  3GCE A;  4EMJ B;  3BCC E;  2B1X A;  2BMO A;  1NTK E;  3CX5 E;  1NYK A;  3VMG D;  1KB9 E;  4NBG A;  3GCF A;  3FOU A;  4NB9 D;  2HMO A;  1NTZ E;  2YFL A;  3GKE A;  1O7N A;  4NBD D;  2NVG A;  2YVJ B;  2IBZ E;  1ULJ A;  1NTM E;  2E4P A;  1Z01 A;  1KYO E;  1VM9 A;  3DQY A;  2CKF A;  3VMH D;  2DE6 D;  5HL4 A;  3AZC A;  3L70 E;  1Z03 A;  1O7G A;  3VMG A;  2YIU C;  1L0L E;  2QJK C;  4NBF A;  3N0Q A;  1BCC E;  4NBA A;  2ZYL A;  4NB9 A;  5AEW A;  4NBH A;  3L72 E;  4NBC D;  1BE3 E;  1EZV E;  1NDO A;  2XRX A;  3L75 E;  4HM1 A;  1Z02 A;  3GL2 A;  3VMI D;  4NBB D;  1Q90 C;  4QUR A;  2HML A;  1SQP E;  4P1B H;  1O7W A;  4HM8 A;  1O7M A;  3C0D A;  1RIE A;  2DE5 D;  4HM3 A;  4QDF A;  4QUP A;  2E4Q A;  1L0N E;  2YFJ A;  2XSH A;  4QDD A;  3H1L E;  5KLI C;  4QDF B;  2HMN A;  4AAY B;  4OGQ D;  5AEU A;  1NU1 E;  1WW9 A;  1O7P A;  1FQT A;  2BMR A;  2XR8 A; 
#chains in the Genus database with same CATH homology
 1G8K B;  2E75 D;  2E76 D;  2DE5 A;  1P84 E;  2QPZ A;  1ULI A;  1UUW A;  2BMQ A;  1ZRT E;  4QCK A;  4NBD A;  1SQX E;  2NUM A;  2QJY C;  3L74 E;  4HM6 A;  1O7H A;  2E74 D;  4NBE D;  4PV1 D;  4AIV A;  2XSO A;  1PP9 E;  4H44 D;  2GBW A;  2DE6 A;  3VMH A;  1SQQ E;  3H1K E;  3EN1 A;  3EQQ A;  3GOB A;  3GTE A;  2JO6 A;  4NB8 D;  2DE7 D;  4QDC A;  1UUV A;  2A06 E;  1G8J B;  1PPJ E;  4NBC A;  4P1C H;  4NBE A;  4U3F E;  2D2C D;  3GKQ A;  3GL0 A;  4HM7 A;  3VMI A;  2NWF A;  1SQV E;  4NBB A;  2HMK A;  3CXH E;  2FYU E;  1WQL A;  3GB4 A;  2BCC E;  3GZY A;  2HMM A;  2YFI A;  4HM5 A;  2B24 A;  1VCK A;  2DE7 A;  2I7F A;  2JZA A;  4HKV A;  1SJG A;  1SQB E;  3D89 A;  1JM1 A;  4H13 D;  3H1H E;  4NBF D;  4NBA D;  3L73 E;  2FYN C;  3H1I E;  4HM2 A;  1VF5 D;  4NBH D;  5KKZ C;  2ZT9 D;  4HM4 A;  1RFS A;  3GZX A;  4H0L D;  4HJL A;  4PD4 E;  2NVF A;  2QJP C;  3VCP A;  4QUQ A;  3H1J E;  5BOK A;  2HMJ A;  2Q3W A;  4NBG D;  3L71 E;  3VCA A;  3GTS A;  3CWB E;  5CXM A;  5KLV E;  2GBX A;  1EG9 A;  4HM0 A;  2NUK A;  2NVE A;  3TGU E;  4NB8 A;  3GCE A;  4EMJ B;  3BCC E;  2B1X A;  2BMO A;  1NTK E;  3CX5 E;  1NYK A;  3VMG D;  1KB9 E;  4NBG A;  3GCF A;  3FOU A;  4NB9 D;  2HMO A;  1NTZ E;  2YFL A;  3GKE A;  1O7N A;  4NBD D;  2NVG A;  2YVJ B;  2IBZ E;  1ULJ A;  1NTM E;  2E4P A;  1Z01 A;  1KYO E;  1VM9 A;  3DQY A;  2CKF A;  3VMH D;  2DE6 D;  5HL4 A;  3AZC A;  3L70 E;  1Z03 A;  1O7G A;  3VMG A;  2YIU C;  1L0L E;  2QJK C;  4NBF A;  3N0Q A;  1BCC E;  4NBA A;  2ZYL A;  4NB9 A;  5AEW A;  4NBH A;  3L72 E;  4NBC D;  1BE3 E;  1EZV E;  1NDO A;  2XRX A;  3L75 E;  4HM1 A;  1Z02 A;  3GL2 A;  3VMI D;  4NBB D;  1Q90 C;  4QUR A;  2HML A;  1SQP E;  4P1B H;  1O7W A;  4HM8 A;  1O7M A;  3C0D A;  1RIE A;  2DE5 D;  4HM3 A;  4QDF A;  4QUP A;  2E4Q A;  1L0N E;  2YFJ A;  2XSH A;  4QDD A;  3H1L E;  5KLI C;  4QDF B;  2HMN A;  4AAY B;  4OGQ D;  5AEU A;  1NU1 E;  1WW9 A;  1O7P A;  1FQT A;  2BMR A;  2XR8 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...