4NB8D

Oxygenase with ile262 replaced by leu and ferredoxin complex of carbazole 1,9a-dioxygenase
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
105
structure length
105
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEKKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Terminal oxygenase component of carbazole
publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 19
structure length 105
sequence length 105
chains with identical sequence E, F
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nb8D00
5HL4A 3GCEA 2CKFA 2BMOA 2D2CD 1PP9E 1Q90C 2DE7D 2XR8A 4HM7A 3FOUA 2NVGA 1WQLA 3BCCE 2NWFA 4NBED 1ULJA 1NTME 4EMJB 2QJKC 3CX5E 1P84E 2HMOA 2NVEA 3H1JE 3L72E 2I7FA 2HMJA 2DE6D 1ZRTE 4QDFB 5BOKA 4HM0A 2JZAA 1RFSA 4HJLA 3VMHD 1BCCE 4HM5A 4HKVA 1EG9A 3D89A 1BE3E 1SQBE 3GTEA 1JM1A 2B24A 2QPZA 4HM1A 2FYUE 1SQPE 2YFIA 2YIUC 3VMID 4NBBD 3EQQA 4QDCA 2HMMA 1EZVE 1O7NA 3VCPA 4HM2A 2QJYC 4H44D 4NB9D 1ULIA 3L75E 4PD4E 1KYOE 2DE5D 2XSOA 4H0LD 2QJPC 4QCKA 3GOBA 2BMRA 1O7PA 2YFJA 1O7MA 3GZXA 2IBZE 4PV1D 1UUWA 1O7GA 4HM8A 2BMQA 3GTSA 1NTKE 4HM4A 4NBHD 1FQTA 3TGUE 3H1HE 1G8KB 2E74D 3H1LE 4QDFA 1NDOA 2FYNC 4NBAD 5KLVE 4NBCD 2NUMA 4NB8D 4HM6A 1SQVE 1PPJE 5CXMA 2E4QA 2B1XA 3H1KE 3N0QA 2NUKA 4AAYB 3VMGD 3VCAA 1SQXE 4QDDA 4NBFD 4QUPA 2JO6A 4HM3A 3GL0A 3H1IE 1SQQE 2E76D 3AZCA 4NBGD 5KKZC 2BCCE 2YVJB 2GBWA 4NBDD 3L74E 1NYKA 3GL2A 2Q3WA 3GKEA 2XRXA 4AIVA 1VM9A 5AEUA 1NU1E 3EN1A 1O7WA 4QUQA 1O7HA 2NVFA 3CWBE 1L0NE 1NTZE 2E75D 2GBXA 1L0LE 2E4PA 2HMKA 2ZT9D 3C0DA 3DQYA 1RIEA 1UUVA 4OGQD 3L73E 2ZYLA 4P1CH 5AEWA 1G8JB 1VF5D 2A06E 3L71E 4QURA 4U3FE 1SJGA 2XSHA 2YFLA 3GZYA 2HMNA 1VCKA 1KB9E 4H13D 3GB4A 3L70E 2HMLA 5KLIC 3CXHE 4P1BH
chains in the Genus database with same CATH superfamily
5HL4A 3GCEA 2CKFA 2BMOA 2D2CD 1PP9E 1Q90C 2DE7D 2XR8A 4HM7A 3FOUA 2NVGA 1WQLA 3BCCE 2NWFA 4NBED 1ULJA 1NTME 4EMJB 2QJKC 3CX5E 1P84E 2HMOA 2NVEA 3H1JE 3L72E 2I7FA 2HMJA 2DE6D 1ZRTE 4QDFB 5BOKA 4HM0A 2JZAA 1RFSA 4HJLA 3VMHD 1BCCE 4HM5A 4HKVA 1EG9A 3D89A 1BE3E 1SQBE 3GTEA 1JM1A 2B24A 2QPZA 4HM1A 2FYUE 1SQPE 2YFIA 2YIUC 3VMID 4NBBD 3EQQA 4QDCA 2HMMA 1EZVE 1O7NA 3VCPA 4HM2A 2QJYC 4H44D 4NB9D 1ULIA 3L75E 4PD4E 1KYOE 2DE5D 2XSOA 4H0LD 2QJPC 4QCKA 3GOBA 2BMRA 1O7PA 2YFJA 1O7MA 3GZXA 2IBZE 4PV1D 1UUWA 1O7GA 4HM8A 2BMQA 3GTSA 1NTKE 4HM4A 4NBHD 1FQTA 3TGUE 3H1HE 1G8KB 2E74D 3H1LE 4QDFA 1NDOA 2FYNC 4NBAD 5KLVE 4NBCD 2NUMA 4NB8D 4HM6A 1SQVE 1PPJE 5CXMA 2E4QA 2B1XA 3H1KE 3N0QA 2NUKA 4AAYB 3VMGD 3VCAA 1SQXE 4QDDA 4NBFD 4QUPA 2JO6A 4HM3A 3GL0A 3H1IE 1SQQE 2E76D 3AZCA 4NBGD 5KKZC 2BCCE 2YVJB 2GBWA 4NBDD 3L74E 1NYKA 3GL2A 2Q3WA 3GKEA 2XRXA 4AIVA 1VM9A 5AEUA 1NU1E 3EN1A 1O7WA 4QUQA 1O7HA 2NVFA 3CWBE 1L0NE 1NTZE 2E75D 2GBXA 1L0LE 2E4PA 2HMKA 2ZT9D 3C0DA 3DQYA 1RIEA 1UUVA 4OGQD 3L73E 2ZYLA 4P1CH 5AEWA 1G8JB 1VF5D 2A06E 3L71E 4QURA 4U3FE 1SJGA 2XSHA 2YFLA 3GZYA 2HMNA 1VCKA 1KB9E 4H13D 3GB4A 3L70E 2HMLA 5KLIC 3CXHE 4P1BH
chains in the Genus database with same CATH topology
5HL4A 3GCEA 2CKFA 2BMOA 2D2CD 1PP9E 1Q90C 2DE7D 2XR8A 4HM7A 3FOUA 2NVGA 1WQLA 3BCCE 2NWFA 4NBED 1ULJA 1NTME 4EMJB 2QJKC 3CX5E 1P84E 2HMOA 2NVEA 3H1JE 3L72E 2I7FA 2HMJA 2DE6D 1ZRTE 4QDFB 5BOKA 4HM0A 2JZAA 1RFSA 4HJLA 3VMHD 1BCCE 4HM5A 4HKVA 1EG9A 3D89A 1BE3E 1SQBE 3GTEA 1JM1A 2B24A 2QPZA 4HM1A 2FYUE 1SQPE 2YFIA 2YIUC 3VMID 4NBBD 3EQQA 4QDCA 2HMMA 1EZVE 1O7NA 3VCPA 4HM2A 2QJYC 4H44D 4NB9D 1ULIA 3L75E 4PD4E 1KYOE 2DE5D 2XSOA 4H0LD 2QJPC 4QCKA 3GOBA 2BMRA 1O7PA 2YFJA 1O7MA 3GZXA 2IBZE 4PV1D 1UUWA 1O7GA 4HM8A 2BMQA 3GTSA 1NTKE 4HM4A 4NBHD 1FQTA 3TGUE 3H1HE 1G8KB 2E74D 3H1LE 4QDFA 1NDOA 2FYNC 4NBAD 5KLVE 4NBCD 2NUMA 4NB8D 4HM6A 1SQVE 1PPJE 5CXMA 2E4QA 2B1XA 3H1KE 3N0QA 2NUKA 4AAYB 3VMGD 3VCAA 1SQXE 4QDDA 4NBFD 4QUPA 2JO6A 4HM3A 3GL0A 3H1IE 1SQQE 2E76D 3AZCA 4NBGD 5KKZC 2BCCE 2YVJB 2GBWA 4NBDD 3L74E 1NYKA 3GL2A 2Q3WA 3GKEA 2XRXA 4AIVA 1VM9A 5AEUA 1NU1E 3EN1A 1O7WA 4QUQA 1O7HA 2NVFA 3CWBE 1L0NE 1NTZE 2E75D 2GBXA 1L0LE 2E4PA 2HMKA 2ZT9D 3C0DA 3DQYA 1RIEA 1UUVA 4OGQD 3L73E 2ZYLA 4P1CH 5AEWA 1G8JB 1VF5D 2A06E 3L71E 4QURA 4U3FE 1SJGA 2XSHA 2YFLA 3GZYA 2HMNA 1VCKA 1KB9E 4H13D 3GB4A 3L70E 2HMLA 5KLIC 3CXHE 4P1BH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HL4 A;  3GCE A;  2CKF A;  2BMO A;  2D2C D;  1PP9 E;  1Q90 C;  2DE7 D;  2XR8 A;  4HM7 A;  3FOU A;  2NVG A;  1WQL A;  3BCC E;  2NWF A;  4NBE D;  1ULJ A;  1NTM E;  4EMJ B;  2QJK C;  3CX5 E;  1P84 E;  2HMO A;  2NVE A;  3H1J E;  3L72 E;  2I7F A;  2HMJ A;  2DE6 D;  1ZRT E;  4QDF B;  5BOK A;  4HM0 A;  2JZA A;  1RFS A;  4HJL A;  3VMH D;  1BCC E;  4HM5 A;  4HKV A;  1EG9 A;  3D89 A;  1BE3 E;  1SQB E;  3GTE A;  1JM1 A;  2B24 A;  2QPZ A;  4HM1 A;  2FYU E;  1SQP E;  2YFI A;  2YIU C;  3VMI D;  4NBB D;  3EQQ A;  4QDC A;  2HMM A;  1EZV E;  1O7N A;  3VCP A;  4HM2 A;  2QJY C;  4H44 D;  4NB9 D;  1ULI A;  3L75 E;  4PD4 E;  1KYO E;  2DE5 D;  2XSO A;  4H0L D;  2QJP C;  4QCK A;  3GOB A;  2BMR A;  1O7P A;  2YFJ A;  1O7M A;  3GZX A;  2IBZ E;  4PV1 D;  1UUW A;  1O7G A;  4HM8 A;  2BMQ A;  3GTS A;  1NTK E;  4HM4 A;  4NBH D;  1FQT A;  3TGU E;  3H1H E;  1G8K B;  2E74 D;  3H1L E;  4QDF A;  1NDO A;  2FYN C;  4NBA D;  5KLV E;  4NBC D;  2NUM A;  4NB8 D;  4HM6 A;  1SQV E;  1PPJ E;  5CXM A;  2E4Q A;  2B1X A;  3H1K E;  3N0Q A;  2NUK A;  4AAY B;  3VMG D;  3VCA A;  1SQX E;  4QDD A;  4NBF D;  4QUP A;  2JO6 A;  4HM3 A;  3GL0 A;  3H1I E;  1SQQ E;  2E76 D;  3AZC A;  4NBG D;  5KKZ C;  2BCC E;  2YVJ B;  2GBW A;  4NBD D;  3L74 E;  1NYK A;  3GL2 A;  2Q3W A;  3GKE A;  2XRX A;  4AIV A;  1VM9 A;  5AEU A;  1NU1 E;  3EN1 A;  1O7W A;  4QUQ A;  1O7H A;  2NVF A;  3CWB E;  1L0N E;  1NTZ E;  2E75 D;  2GBX A;  1L0L E;  2E4P A;  2HMK A;  2ZT9 D;  3C0D A;  3DQY A;  1RIE A;  1UUV A;  4OGQ D;  3L73 E;  2ZYL A;  4P1C H;  5AEW A;  1G8J B;  1VF5 D;  2A06 E;  3L71 E;  4QUR A;  4U3F E;  1SJG A;  2XSH A;  2YFL A;  3GZY A;  2HMN A;  1VCK A;  1KB9 E;  4H13 D;  3GB4 A;  3L70 E;  2HML A;  5KLI C;  3CXH E;  4P1B H; 
#chains in the Genus database with same CATH topology
 5HL4 A;  3GCE A;  2CKF A;  2BMO A;  2D2C D;  1PP9 E;  1Q90 C;  2DE7 D;  2XR8 A;  4HM7 A;  3FOU A;  2NVG A;  1WQL A;  3BCC E;  2NWF A;  4NBE D;  1ULJ A;  1NTM E;  4EMJ B;  2QJK C;  3CX5 E;  1P84 E;  2HMO A;  2NVE A;  3H1J E;  3L72 E;  2I7F A;  2HMJ A;  2DE6 D;  1ZRT E;  4QDF B;  5BOK A;  4HM0 A;  2JZA A;  1RFS A;  4HJL A;  3VMH D;  1BCC E;  4HM5 A;  4HKV A;  1EG9 A;  3D89 A;  1BE3 E;  1SQB E;  3GTE A;  1JM1 A;  2B24 A;  2QPZ A;  4HM1 A;  2FYU E;  1SQP E;  2YFI A;  2YIU C;  3VMI D;  4NBB D;  3EQQ A;  4QDC A;  2HMM A;  1EZV E;  1O7N A;  3VCP A;  4HM2 A;  2QJY C;  4H44 D;  4NB9 D;  1ULI A;  3L75 E;  4PD4 E;  1KYO E;  2DE5 D;  2XSO A;  4H0L D;  2QJP C;  4QCK A;  3GOB A;  2BMR A;  1O7P A;  2YFJ A;  1O7M A;  3GZX A;  2IBZ E;  4PV1 D;  1UUW A;  1O7G A;  4HM8 A;  2BMQ A;  3GTS A;  1NTK E;  4HM4 A;  4NBH D;  1FQT A;  3TGU E;  3H1H E;  1G8K B;  2E74 D;  3H1L E;  4QDF A;  1NDO A;  2FYN C;  4NBA D;  5KLV E;  4NBC D;  2NUM A;  4NB8 D;  4HM6 A;  1SQV E;  1PPJ E;  5CXM A;  2E4Q A;  2B1X A;  3H1K E;  3N0Q A;  2NUK A;  4AAY B;  3VMG D;  3VCA A;  1SQX E;  4QDD A;  4NBF D;  4QUP A;  2JO6 A;  4HM3 A;  3GL0 A;  3H1I E;  1SQQ E;  2E76 D;  3AZC A;  4NBG D;  5KKZ C;  2BCC E;  2YVJ B;  2GBW A;  4NBD D;  3L74 E;  1NYK A;  3GL2 A;  2Q3W A;  3GKE A;  2XRX A;  4AIV A;  1VM9 A;  5AEU A;  1NU1 E;  3EN1 A;  1O7W A;  4QUQ A;  1O7H A;  2NVF A;  3CWB E;  1L0N E;  1NTZ E;  2E75 D;  2GBX A;  1L0L E;  2E4P A;  2HMK A;  2ZT9 D;  3C0D A;  3DQY A;  1RIE A;  1UUV A;  4OGQ D;  3L73 E;  2ZYL A;  4P1C H;  5AEW A;  1G8J B;  1VF5 D;  2A06 E;  3L71 E;  4QUR A;  4U3F E;  1SJG A;  2XSH A;  2YFL A;  3GZY A;  2HMN A;  1VCK A;  1KB9 E;  4H13 D;  3GB4 A;  3L70 E;  2HML A;  5KLI C;  3CXH E;  4P1B H; 
#chains in the Genus database with same CATH homology
 5HL4 A;  3GCE A;  2CKF A;  2BMO A;  2D2C D;  1PP9 E;  1Q90 C;  2DE7 D;  2XR8 A;  4HM7 A;  3FOU A;  2NVG A;  1WQL A;  3BCC E;  2NWF A;  4NBE D;  1ULJ A;  1NTM E;  4EMJ B;  2QJK C;  3CX5 E;  1P84 E;  2HMO A;  2NVE A;  3H1J E;  3L72 E;  2I7F A;  2HMJ A;  2DE6 D;  1ZRT E;  4QDF B;  5BOK A;  4HM0 A;  2JZA A;  1RFS A;  4HJL A;  3VMH D;  1BCC E;  4HM5 A;  4HKV A;  1EG9 A;  3D89 A;  1BE3 E;  1SQB E;  3GTE A;  1JM1 A;  2B24 A;  2QPZ A;  4HM1 A;  2FYU E;  1SQP E;  2YFI A;  2YIU C;  3VMI D;  4NBB D;  3EQQ A;  4QDC A;  2HMM A;  1EZV E;  1O7N A;  3VCP A;  4HM2 A;  2QJY C;  4H44 D;  4NB9 D;  1ULI A;  3L75 E;  4PD4 E;  1KYO E;  2DE5 D;  2XSO A;  4H0L D;  2QJP C;  4QCK A;  3GOB A;  2BMR A;  1O7P A;  2YFJ A;  1O7M A;  3GZX A;  2IBZ E;  4PV1 D;  1UUW A;  1O7G A;  4HM8 A;  2BMQ A;  3GTS A;  1NTK E;  4HM4 A;  4NBH D;  1FQT A;  3TGU E;  3H1H E;  1G8K B;  2E74 D;  3H1L E;  4QDF A;  1NDO A;  2FYN C;  4NBA D;  5KLV E;  4NBC D;  2NUM A;  4NB8 D;  4HM6 A;  1SQV E;  1PPJ E;  5CXM A;  2E4Q A;  2B1X A;  3H1K E;  3N0Q A;  2NUK A;  4AAY B;  3VMG D;  3VCA A;  1SQX E;  4QDD A;  4NBF D;  4QUP A;  2JO6 A;  4HM3 A;  3GL0 A;  3H1I E;  1SQQ E;  2E76 D;  3AZC A;  4NBG D;  5KKZ C;  2BCC E;  2YVJ B;  2GBW A;  4NBD D;  3L74 E;  1NYK A;  3GL2 A;  2Q3W A;  3GKE A;  2XRX A;  4AIV A;  1VM9 A;  5AEU A;  1NU1 E;  3EN1 A;  1O7W A;  4QUQ A;  1O7H A;  2NVF A;  3CWB E;  1L0N E;  1NTZ E;  2E75 D;  2GBX A;  1L0L E;  2E4P A;  2HMK A;  2ZT9 D;  3C0D A;  3DQY A;  1RIE A;  1UUV A;  4OGQ D;  3L73 E;  2ZYL A;  4P1C H;  5AEW A;  1G8J B;  1VF5 D;  2A06 E;  3L71 E;  4QUR A;  4U3F E;  1SJG A;  2XSH A;  2YFL A;  3GZY A;  2HMN A;  1VCK A;  1KB9 E;  4H13 D;  3GB4 A;  3L70 E;  2HML A;  5KLI C;  3CXH E;  4P1B H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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