4HKVA

Naphthalene 1,2-dioxygenase bound to benzamide
Total Genus 165
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
165
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Naphthalene 1,2-Dioxygenase bound to benzamide
rcsb
source organism Pseudomonas sp. c18
molecule tags Oxidoreductase/oxidoreductase inhibitor
molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
total genus 165
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hkvA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hkvA01
4NB9A 1SQQE 1PP9E 3GZYA 3H1LE 2NVEA 2QJYC 4H13D 1WW9A 2DE6D 1NU1E 3AZCA 4NBHD 2JO6A 4NBEA 1SQBE 2BMQA 4QUPA 4HM5A 2B1XA 2DE5D 2HMJA 4QDCA 1NDOA 2HMLA 4HM2A 4U3FE 2YFLA 1JM1A 1VF5D 3BCCE 3GTSA 3L74E 2DE7A 2YFIA 3L71E 4QDDA 2XRXA 3L70E 4NBFD 4NBDA 4NBBD 3VMID 4NBDD 2YFJA 2ZYLA 1EG9A 4H0LD 1NTKE 2NVGA 1NTME 4HM0A 1G8JB 2Q3WA 5KKZC 2XSHA 4P1CH 2NUMA 2XR8A 3GL2A 2FYUE 3L72E 1SJGA 1VCKA 4QDFB 3EQQA 1BCCE 2YVJB 3GCFA 2HMOA 4NB8D 4NBAA 2HMKA 3N0QA 5HL4A 4AIVA 2BCCE 4HM3A 3CWBE 3GB4A 2B24A 2DE7D 1Q90C 1NYKA 1P84E 4PD4E 2QJKC 3DQYA 4NBAD 4P1BH 5AEUA 3VMIA 1UUWA 4QDFA 2CKFA 5BOKA 4QUQA 1O7PA 1RFSA 4NBFA 1O7GA 1PPJE 1Z01A 1BE3E 4PV1D 4NBCA 3VMHA 1SQVE 4HM1A 4QCKA 1RIEA 3FOUA 3GKEA 3VMHD 3H1KE 2NWFA 1SQPE 2E75D 3VCAA 1O7MA 4NB9D 2E4PA 4OGQD 1ULJA 2I7FA 1L0NE 2JZAA 3GL0A 2YIUC 1ZRTE 2A06E 4HKVA 1NTZE 4NBGA 2GBXA 3C0DA 5KLIC 2FYNC 2QPZA 4HM7A 1WQLA 4EMJB 1Z03A 4NB8A 4NBCD 1SQXE 2E4QA 1VM9A 2HMMA 3CXHE 3GZXA 1O7HA 4HJLA 2XSOA 4H44D 3VCPA 4AAYB 3TGUE 4NBHA 4HM4A 4NBED 2NUKA 2DE6A 4NBGD 1ULIA 4HM6A 3VMGD 2QJPC 2E74D 2HMNA 3L75E 4NBBA 2ZT9D 1O7NA 3GTEA 2D2CD 3L73E 1EZVE 2E76D 3H1IE 4HM8A 5CXMA 3VMGA 5KLVE 3H1HE 2NVFA 3GKQA 1FQTA 5AEWA 3CX5E 2IBZE 3H1JE 1G8KB 4QURA 1Z02A 1KB9E 2BMOA 2DE5A 1KYOE 3EN1A 1L0LE 3GCEA 3D89A 3GOBA 2BMRA 1UUVA 1O7WA 2GBWA
chains in the Genus database with same CATH superfamily
4NB9A 1SQQE 1PP9E 3GZYA 3H1LE 2NVEA 2QJYC 4H13D 1WW9A 2DE6D 1NU1E 3AZCA 4NBHD 2JO6A 4NBEA 1SQBE 2BMQA 4QUPA 4HM5A 2B1XA 2DE5D 2HMJA 4QDCA 1NDOA 2HMLA 4HM2A 4U3FE 2YFLA 1JM1A 1VF5D 3BCCE 3GTSA 3L74E 2DE7A 2YFIA 3L71E 4QDDA 2XRXA 3L70E 4NBFD 4NBDA 4NBBD 3VMID 4NBDD 2YFJA 2ZYLA 1EG9A 4H0LD 1NTKE 2NVGA 1NTME 4HM0A 1G8JB 2Q3WA 5KKZC 2XSHA 4P1CH 2NUMA 2XR8A 3GL2A 2FYUE 3L72E 1SJGA 1VCKA 4QDFB 3EQQA 1BCCE 2YVJB 3GCFA 2HMOA 4NB8D 4NBAA 2HMKA 3N0QA 5HL4A 4AIVA 2BCCE 4HM3A 3CWBE 3GB4A 2B24A 2DE7D 1Q90C 1NYKA 1P84E 4PD4E 2QJKC 3DQYA 4NBAD 4P1BH 5AEUA 3VMIA 1UUWA 4QDFA 2CKFA 5BOKA 4QUQA 1O7PA 1RFSA 4NBFA 1O7GA 1PPJE 1Z01A 1BE3E 4PV1D 4NBCA 3VMHA 1SQVE 4HM1A 4QCKA 1RIEA 3FOUA 3GKEA 3VMHD 3H1KE 2NWFA 1SQPE 2E75D 3VCAA 1O7MA 4NB9D 2E4PA 4OGQD 1ULJA 2I7FA 1L0NE 2JZAA 3GL0A 2YIUC 1ZRTE 2A06E 4HKVA 1NTZE 4NBGA 2GBXA 3C0DA 5KLIC 2FYNC 2QPZA 4HM7A 1WQLA 4EMJB 1Z03A 4NB8A 4NBCD 1SQXE 2E4QA 1VM9A 2HMMA 3CXHE 3GZXA 1O7HA 4HJLA 2XSOA 4H44D 3VCPA 4AAYB 3TGUE 4NBHA 4HM4A 4NBED 2NUKA 2DE6A 4NBGD 1ULIA 4HM6A 3VMGD 2QJPC 2E74D 2HMNA 3L75E 4NBBA 2ZT9D 1O7NA 3GTEA 2D2CD 3L73E 1EZVE 2E76D 3H1IE 4HM8A 5CXMA 3VMGA 5KLVE 3H1HE 2NVFA 3GKQA 1FQTA 5AEWA 3CX5E 2IBZE 3H1JE 1G8KB 4QURA 1Z02A 1KB9E 2BMOA 2DE5A 1KYOE 3EN1A 1L0LE 3GCEA 3D89A 3GOBA 2BMRA 1UUVA 1O7WA 2GBWA
chains in the Genus database with same CATH topology
4NB9A 1SQQE 1PP9E 3GZYA 3H1LE 2NVEA 2QJYC 4H13D 1WW9A 2DE6D 1NU1E 3AZCA 4NBHD 2JO6A 4NBEA 1SQBE 2BMQA 4QUPA 4HM5A 2B1XA 2DE5D 2HMJA 4QDCA 1NDOA 2HMLA 4HM2A 4U3FE 2YFLA 1JM1A 1VF5D 3BCCE 3GTSA 3L74E 2DE7A 2YFIA 3L71E 4QDDA 2XRXA 3L70E 4NBFD 4NBDA 4NBBD 3VMID 4NBDD 2YFJA 2ZYLA 1EG9A 4H0LD 1NTKE 2NVGA 1NTME 4HM0A 1G8JB 2Q3WA 5KKZC 2XSHA 4P1CH 2NUMA 2XR8A 3GL2A 2FYUE 3L72E 1SJGA 1VCKA 4QDFB 3EQQA 1BCCE 2YVJB 3GCFA 2HMOA 4NB8D 4NBAA 2HMKA 3N0QA 5HL4A 4AIVA 2BCCE 4HM3A 3CWBE 3GB4A 2B24A 2DE7D 1Q90C 1NYKA 1P84E 4PD4E 2QJKC 3DQYA 4NBAD 4P1BH 5AEUA 3VMIA 1UUWA 4QDFA 2CKFA 5BOKA 4QUQA 1O7PA 1RFSA 4NBFA 1O7GA 1PPJE 1Z01A 1BE3E 4PV1D 4NBCA 3VMHA 1SQVE 4HM1A 4QCKA 1RIEA 3FOUA 3GKEA 3VMHD 3H1KE 2NWFA 1SQPE 2E75D 3VCAA 1O7MA 4NB9D 2E4PA 4OGQD 1ULJA 2I7FA 1L0NE 2JZAA 3GL0A 2YIUC 1ZRTE 2A06E 4HKVA 1NTZE 4NBGA 2GBXA 3C0DA 5KLIC 2FYNC 2QPZA 4HM7A 1WQLA 4EMJB 1Z03A 4NB8A 4NBCD 1SQXE 2E4QA 1VM9A 2HMMA 3CXHE 3GZXA 1O7HA 4HJLA 2XSOA 4H44D 3VCPA 4AAYB 3TGUE 4NBHA 4HM4A 4NBED 2NUKA 2DE6A 4NBGD 1ULIA 4HM6A 3VMGD 2QJPC 2E74D 2HMNA 3L75E 4NBBA 2ZT9D 1O7NA 3GTEA 2D2CD 3L73E 1EZVE 2E76D 3H1IE 4HM8A 5CXMA 3VMGA 5KLVE 3H1HE 2NVFA 3GKQA 1FQTA 5AEWA 3CX5E 2IBZE 3H1JE 1G8KB 4QURA 1Z02A 1KB9E 2BMOA 2DE5A 1KYOE 3EN1A 1L0LE 3GCEA 3D89A 3GOBA 2BMRA 1UUVA 1O7WA 2GBWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NB9 A;  1SQQ E;  1PP9 E;  3GZY A;  3H1L E;  2NVE A;  2QJY C;  4H13 D;  1WW9 A;  2DE6 D;  1NU1 E;  3AZC A;  4NBH D;  2JO6 A;  4NBE A;  1SQB E;  2BMQ A;  4QUP A;  4HM5 A;  2B1X A;  2DE5 D;  2HMJ A;  4QDC A;  1NDO A;  2HML A;  4HM2 A;  4U3F E;  2YFL A;  1JM1 A;  1VF5 D;  3BCC E;  3GTS A;  3L74 E;  2DE7 A;  2YFI A;  3L71 E;  4QDD A;  2XRX A;  3L70 E;  4NBF D;  4NBD A;  4NBB D;  3VMI D;  4NBD D;  2YFJ A;  2ZYL A;  1EG9 A;  4H0L D;  1NTK E;  2NVG A;  1NTM E;  4HM0 A;  1G8J B;  2Q3W A;  5KKZ C;  2XSH A;  4P1C H;  2NUM A;  2XR8 A;  3GL2 A;  2FYU E;  3L72 E;  1SJG A;  1VCK A;  4QDF B;  3EQQ A;  1BCC E;  2YVJ B;  3GCF A;  2HMO A;  4NB8 D;  4NBA A;  2HMK A;  3N0Q A;  5HL4 A;  4AIV A;  2BCC E;  4HM3 A;  3CWB E;  3GB4 A;  2B24 A;  2DE7 D;  1Q90 C;  1NYK A;  1P84 E;  4PD4 E;  2QJK C;  3DQY A;  4NBA D;  4P1B H;  5AEU A;  3VMI A;  1UUW A;  4QDF A;  2CKF A;  5BOK A;  4QUQ A;  1O7P A;  1RFS A;  4NBF A;  1O7G A;  1PPJ E;  1Z01 A;  1BE3 E;  4PV1 D;  4NBC A;  3VMH A;  1SQV E;  4HM1 A;  4QCK A;  1RIE A;  3FOU A;  3GKE A;  3VMH D;  3H1K E;  2NWF A;  1SQP E;  2E75 D;  3VCA A;  1O7M A;  4NB9 D;  2E4P A;  4OGQ D;  1ULJ A;  2I7F A;  1L0N E;  2JZA A;  3GL0 A;  2YIU C;  1ZRT E;  2A06 E;  4HKV A;  1NTZ E;  4NBG A;  2GBX A;  3C0D A;  5KLI C;  2FYN C;  2QPZ A;  4HM7 A;  1WQL A;  4EMJ B;  1Z03 A;  4NB8 A;  4NBC D;  1SQX E;  2E4Q A;  1VM9 A;  2HMM A;  3CXH E;  3GZX A;  1O7H A;  4HJL A;  2XSO A;  4H44 D;  3VCP A;  4AAY B;  3TGU E;  4NBH A;  4HM4 A;  4NBE D;  2NUK A;  2DE6 A;  4NBG D;  1ULI A;  4HM6 A;  3VMG D;  2QJP C;  2E74 D;  2HMN A;  3L75 E;  4NBB A;  2ZT9 D;  1O7N A;  3GTE A;  2D2C D;  3L73 E;  1EZV E;  2E76 D;  3H1I E;  4HM8 A;  5CXM A;  3VMG A;  5KLV E;  3H1H E;  2NVF A;  3GKQ A;  1FQT A;  5AEW A;  3CX5 E;  2IBZ E;  3H1J E;  1G8K B;  4QUR A;  1Z02 A;  1KB9 E;  2BMO A;  2DE5 A;  1KYO E;  3EN1 A;  1L0L E;  3GCE A;  3D89 A;  3GOB A;  2BMR A;  1UUV A;  1O7W A;  2GBW A; 
#chains in the Genus database with same CATH topology
 4NB9 A;  1SQQ E;  1PP9 E;  3GZY A;  3H1L E;  2NVE A;  2QJY C;  4H13 D;  1WW9 A;  2DE6 D;  1NU1 E;  3AZC A;  4NBH D;  2JO6 A;  4NBE A;  1SQB E;  2BMQ A;  4QUP A;  4HM5 A;  2B1X A;  2DE5 D;  2HMJ A;  4QDC A;  1NDO A;  2HML A;  4HM2 A;  4U3F E;  2YFL A;  1JM1 A;  1VF5 D;  3BCC E;  3GTS A;  3L74 E;  2DE7 A;  2YFI A;  3L71 E;  4QDD A;  2XRX A;  3L70 E;  4NBF D;  4NBD A;  4NBB D;  3VMI D;  4NBD D;  2YFJ A;  2ZYL A;  1EG9 A;  4H0L D;  1NTK E;  2NVG A;  1NTM E;  4HM0 A;  1G8J B;  2Q3W A;  5KKZ C;  2XSH A;  4P1C H;  2NUM A;  2XR8 A;  3GL2 A;  2FYU E;  3L72 E;  1SJG A;  1VCK A;  4QDF B;  3EQQ A;  1BCC E;  2YVJ B;  3GCF A;  2HMO A;  4NB8 D;  4NBA A;  2HMK A;  3N0Q A;  5HL4 A;  4AIV A;  2BCC E;  4HM3 A;  3CWB E;  3GB4 A;  2B24 A;  2DE7 D;  1Q90 C;  1NYK A;  1P84 E;  4PD4 E;  2QJK C;  3DQY A;  4NBA D;  4P1B H;  5AEU A;  3VMI A;  1UUW A;  4QDF A;  2CKF A;  5BOK A;  4QUQ A;  1O7P A;  1RFS A;  4NBF A;  1O7G A;  1PPJ E;  1Z01 A;  1BE3 E;  4PV1 D;  4NBC A;  3VMH A;  1SQV E;  4HM1 A;  4QCK A;  1RIE A;  3FOU A;  3GKE A;  3VMH D;  3H1K E;  2NWF A;  1SQP E;  2E75 D;  3VCA A;  1O7M A;  4NB9 D;  2E4P A;  4OGQ D;  1ULJ A;  2I7F A;  1L0N E;  2JZA A;  3GL0 A;  2YIU C;  1ZRT E;  2A06 E;  4HKV A;  1NTZ E;  4NBG A;  2GBX A;  3C0D A;  5KLI C;  2FYN C;  2QPZ A;  4HM7 A;  1WQL A;  4EMJ B;  1Z03 A;  4NB8 A;  4NBC D;  1SQX E;  2E4Q A;  1VM9 A;  2HMM A;  3CXH E;  3GZX A;  1O7H A;  4HJL A;  2XSO A;  4H44 D;  3VCP A;  4AAY B;  3TGU E;  4NBH A;  4HM4 A;  4NBE D;  2NUK A;  2DE6 A;  4NBG D;  1ULI A;  4HM6 A;  3VMG D;  2QJP C;  2E74 D;  2HMN A;  3L75 E;  4NBB A;  2ZT9 D;  1O7N A;  3GTE A;  2D2C D;  3L73 E;  1EZV E;  2E76 D;  3H1I E;  4HM8 A;  5CXM A;  3VMG A;  5KLV E;  3H1H E;  2NVF A;  3GKQ A;  1FQT A;  5AEW A;  3CX5 E;  2IBZ E;  3H1J E;  1G8K B;  4QUR A;  1Z02 A;  1KB9 E;  2BMO A;  2DE5 A;  1KYO E;  3EN1 A;  1L0L E;  3GCE A;  3D89 A;  3GOB A;  2BMR A;  1UUV A;  1O7W A;  2GBW A; 
#chains in the Genus database with same CATH homology
 4NB9 A;  1SQQ E;  1PP9 E;  3GZY A;  3H1L E;  2NVE A;  2QJY C;  4H13 D;  1WW9 A;  2DE6 D;  1NU1 E;  3AZC A;  4NBH D;  2JO6 A;  4NBE A;  1SQB E;  2BMQ A;  4QUP A;  4HM5 A;  2B1X A;  2DE5 D;  2HMJ A;  4QDC A;  1NDO A;  2HML A;  4HM2 A;  4U3F E;  2YFL A;  1JM1 A;  1VF5 D;  3BCC E;  3GTS A;  3L74 E;  2DE7 A;  2YFI A;  3L71 E;  4QDD A;  2XRX A;  3L70 E;  4NBF D;  4NBD A;  4NBB D;  3VMI D;  4NBD D;  2YFJ A;  2ZYL A;  1EG9 A;  4H0L D;  1NTK E;  2NVG A;  1NTM E;  4HM0 A;  1G8J B;  2Q3W A;  5KKZ C;  2XSH A;  4P1C H;  2NUM A;  2XR8 A;  3GL2 A;  2FYU E;  3L72 E;  1SJG A;  1VCK A;  4QDF B;  3EQQ A;  1BCC E;  2YVJ B;  3GCF A;  2HMO A;  4NB8 D;  4NBA A;  2HMK A;  3N0Q A;  5HL4 A;  4AIV A;  2BCC E;  4HM3 A;  3CWB E;  3GB4 A;  2B24 A;  2DE7 D;  1Q90 C;  1NYK A;  1P84 E;  4PD4 E;  2QJK C;  3DQY A;  4NBA D;  4P1B H;  5AEU A;  3VMI A;  1UUW A;  4QDF A;  2CKF A;  5BOK A;  4QUQ A;  1O7P A;  1RFS A;  4NBF A;  1O7G A;  1PPJ E;  1Z01 A;  1BE3 E;  4PV1 D;  4NBC A;  3VMH A;  1SQV E;  4HM1 A;  4QCK A;  1RIE A;  3FOU A;  3GKE A;  3VMH D;  3H1K E;  2NWF A;  1SQP E;  2E75 D;  3VCA A;  1O7M A;  4NB9 D;  2E4P A;  4OGQ D;  1ULJ A;  2I7F A;  1L0N E;  2JZA A;  3GL0 A;  2YIU C;  1ZRT E;  2A06 E;  4HKV A;  1NTZ E;  4NBG A;  2GBX A;  3C0D A;  5KLI C;  2FYN C;  2QPZ A;  4HM7 A;  1WQL A;  4EMJ B;  1Z03 A;  4NB8 A;  4NBC D;  1SQX E;  2E4Q A;  1VM9 A;  2HMM A;  3CXH E;  3GZX A;  1O7H A;  4HJL A;  2XSO A;  4H44 D;  3VCP A;  4AAY B;  3TGU E;  4NBH A;  4HM4 A;  4NBE D;  2NUK A;  2DE6 A;  4NBG D;  1ULI A;  4HM6 A;  3VMG D;  2QJP C;  2E74 D;  2HMN A;  3L75 E;  4NBB A;  2ZT9 D;  1O7N A;  3GTE A;  2D2C D;  3L73 E;  1EZV E;  2E76 D;  3H1I E;  4HM8 A;  5CXM A;  3VMG A;  5KLV E;  3H1H E;  2NVF A;  3GKQ A;  1FQT A;  5AEW A;  3CX5 E;  2IBZ E;  3H1J E;  1G8K B;  4QUR A;  1Z02 A;  1KB9 E;  2BMO A;  2DE5 A;  1KYO E;  3EN1 A;  1L0L E;  3GCE A;  3D89 A;  3GOB A;  2BMR A;  1UUV A;  1O7W A;  2GBW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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