4HKVA

Naphthalene 1,2-dioxygenase bound to benzamide
Total Genus 165
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
165
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase/oxidoreductase inhibitor
molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
publication title Naphthalene 1,2-Dioxygenase bound to benzamide
rcsb
source organism Pseudomonas sp. c18
total genus 165
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hkvA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hkvA01
1NTKE 2JO6A 2QPZA 1RFSA 2BMRA 2E4PA 1EG9A 4H13D 2GBWA 1ULIA 2Q3WA 4HM7A 3L73E 4NB9A 3L75E 4NBDA 3GKEA 2JZAA 4NBHA 2IBZE 4NBAA 4QDFB 5AEWA 3VMGD 2FYNC 4NB8A 1SQVE 4QDDA 1WW9A 2GBXA 4P1BH 3TGUE 1O7WA 1UUWA 3C0DA 3CWBE 2CKFA 4NBEA 1G8KB 2QJKC 4NBFD 2E75D 2DE5D 2HMJA 3GTSA 4HM3A 4QDFA 4QUQA 4NBBD 3GB4A 4NBGD 3EQQA 4QDCA 5CXMA 3GKQA 4NBCA 3VMGA 2BCCE 2FYUE 3L74E 5KLIC 2ZT9D 1O7PA 2YFIA 1VCKA 4H44D 4HM2A 3GL2A 1BCCE 1KB9E 2XR8A 3H1JE 1L0LE 1RIEA 2DE7A 1NYKA 4NBBA 3GOBA 5AEUA 3N0QA 4H0LD 2HMNA 1KYOE 3GL0A 5KKZC 4NBGA 1L0NE 2B1XA 2I7FA 1PP9E 2B24A 1NTME 4HJLA 2DE6D 1SQXE 3CX5E 1NTZE 4U3FE 2YFJA 4HM6A 1JM1A 4HM4A 5BOKA 1SQBE 4HKVA 2NVFA 2BMOA 1SJGA 1Z01A 3GCFA 3DQYA 3CXHE 2NVGA 2XRXA 1ULJA 1O7GA 1Q90C 1SQPE 1Z02A 3D89A 1O7MA 4AIVA 2NUKA 4NB9D 4AAYB 4HM8A 4QURA 1G8JB 1WQLA 4NBDD 3VMID 2QJPC 4PD4E 4NBHD 4P1CH 1UUVA 1Z03A 2QJYC 2NUMA 2HMMA 2YVJB 4NBFA 2HMOA 3VMHD 5KLVE 2DE5A 4NB8D 1SQQE 2E4QA 4OGQD 4EMJB 5HL4A 2HMLA 2YFLA 2D2CD 4HM1A 3VCAA 2NWFA 1BE3E 2XSHA 1EZVE 1VM9A 1NU1E 4NBED 1PPJE 3VMIA 3GTEA 3EN1A 3H1KE 4HM0A 3VCPA 1O7HA 3GZYA 3H1LE 2HMKA 4NBCD 3L71E 2YIUC 1P84E 4HM5A 4QCKA 3L70E 3VMHA 3H1HE 2E76D 1O7NA 2NVEA 3H1IE 2ZYLA 3GZXA 4PV1D 3FOUA 2DE6A 4NBAD 2A06E 3BCCE 2E74D 1NDOA 3AZCA 2XSOA 1ZRTE 1VF5D 4QUPA 2DE7D 3L72E 1FQTA 2BMQA 3GCEA
chains in the Genus database with same CATH superfamily
1NTKE 2JO6A 2QPZA 1RFSA 2BMRA 2E4PA 1EG9A 4H13D 2GBWA 1ULIA 2Q3WA 4HM7A 3L73E 4NB9A 3L75E 4NBDA 3GKEA 2JZAA 4NBHA 2IBZE 4NBAA 4QDFB 5AEWA 3VMGD 2FYNC 4NB8A 1SQVE 4QDDA 1WW9A 2GBXA 4P1BH 3TGUE 1O7WA 1UUWA 3C0DA 3CWBE 2CKFA 4NBEA 1G8KB 2QJKC 4NBFD 2E75D 2DE5D 2HMJA 3GTSA 4HM3A 4QDFA 4QUQA 4NBBD 3GB4A 4NBGD 3EQQA 4QDCA 5CXMA 3GKQA 4NBCA 3VMGA 2BCCE 2FYUE 3L74E 5KLIC 2ZT9D 1O7PA 2YFIA 1VCKA 4H44D 4HM2A 3GL2A 1BCCE 1KB9E 2XR8A 3H1JE 1L0LE 1RIEA 2DE7A 1NYKA 4NBBA 3GOBA 5AEUA 3N0QA 4H0LD 2HMNA 1KYOE 3GL0A 5KKZC 4NBGA 1L0NE 2B1XA 2I7FA 1PP9E 2B24A 1NTME 4HJLA 2DE6D 1SQXE 3CX5E 1NTZE 4U3FE 2YFJA 4HM6A 1JM1A 4HM4A 5BOKA 1SQBE 4HKVA 2NVFA 2BMOA 1SJGA 1Z01A 3GCFA 3DQYA 3CXHE 2NVGA 2XRXA 1ULJA 1O7GA 1Q90C 1SQPE 1Z02A 3D89A 1O7MA 4AIVA 2NUKA 4NB9D 4AAYB 4HM8A 4QURA 1G8JB 1WQLA 4NBDD 3VMID 2QJPC 4PD4E 4NBHD 4P1CH 1UUVA 1Z03A 2QJYC 2NUMA 2HMMA 2YVJB 4NBFA 2HMOA 3VMHD 5KLVE 2DE5A 4NB8D 1SQQE 2E4QA 4OGQD 4EMJB 5HL4A 2HMLA 2YFLA 2D2CD 4HM1A 3VCAA 2NWFA 1BE3E 2XSHA 1EZVE 1VM9A 1NU1E 4NBED 1PPJE 3VMIA 3GTEA 3EN1A 3H1KE 4HM0A 3VCPA 1O7HA 3GZYA 3H1LE 2HMKA 4NBCD 3L71E 2YIUC 1P84E 4HM5A 4QCKA 3L70E 3VMHA 3H1HE 2E76D 1O7NA 2NVEA 3H1IE 2ZYLA 3GZXA 4PV1D 3FOUA 2DE6A 4NBAD 2A06E 3BCCE 2E74D 1NDOA 3AZCA 2XSOA 1ZRTE 1VF5D 4QUPA 2DE7D 3L72E 1FQTA 2BMQA 3GCEA
chains in the Genus database with same CATH topology
1NTKE 2JO6A 2QPZA 1RFSA 2BMRA 2E4PA 1EG9A 4H13D 2GBWA 1ULIA 2Q3WA 4HM7A 3L73E 4NB9A 3L75E 4NBDA 3GKEA 2JZAA 4NBHA 2IBZE 4NBAA 4QDFB 5AEWA 3VMGD 2FYNC 4NB8A 1SQVE 4QDDA 1WW9A 2GBXA 4P1BH 3TGUE 1O7WA 1UUWA 3C0DA 3CWBE 2CKFA 4NBEA 1G8KB 2QJKC 4NBFD 2E75D 2DE5D 2HMJA 3GTSA 4HM3A 4QDFA 4QUQA 4NBBD 3GB4A 4NBGD 3EQQA 4QDCA 5CXMA 3GKQA 4NBCA 3VMGA 2BCCE 2FYUE 3L74E 5KLIC 2ZT9D 1O7PA 2YFIA 1VCKA 4H44D 4HM2A 3GL2A 1BCCE 1KB9E 2XR8A 3H1JE 1L0LE 1RIEA 2DE7A 1NYKA 4NBBA 3GOBA 5AEUA 3N0QA 4H0LD 2HMNA 1KYOE 3GL0A 5KKZC 4NBGA 1L0NE 2B1XA 2I7FA 1PP9E 2B24A 1NTME 4HJLA 2DE6D 1SQXE 3CX5E 1NTZE 4U3FE 2YFJA 4HM6A 1JM1A 4HM4A 5BOKA 1SQBE 4HKVA 2NVFA 2BMOA 1SJGA 1Z01A 3GCFA 3DQYA 3CXHE 2NVGA 2XRXA 1ULJA 1O7GA 1Q90C 1SQPE 1Z02A 3D89A 1O7MA 4AIVA 2NUKA 4NB9D 4AAYB 4HM8A 4QURA 1G8JB 1WQLA 4NBDD 3VMID 2QJPC 4PD4E 4NBHD 4P1CH 1UUVA 1Z03A 2QJYC 2NUMA 2HMMA 2YVJB 4NBFA 2HMOA 3VMHD 5KLVE 2DE5A 4NB8D 1SQQE 2E4QA 4OGQD 4EMJB 5HL4A 2HMLA 2YFLA 2D2CD 4HM1A 3VCAA 2NWFA 1BE3E 2XSHA 1EZVE 1VM9A 1NU1E 4NBED 1PPJE 3VMIA 3GTEA 3EN1A 3H1KE 4HM0A 3VCPA 1O7HA 3GZYA 3H1LE 2HMKA 4NBCD 3L71E 2YIUC 1P84E 4HM5A 4QCKA 3L70E 3VMHA 3H1HE 2E76D 1O7NA 2NVEA 3H1IE 2ZYLA 3GZXA 4PV1D 3FOUA 2DE6A 4NBAD 2A06E 3BCCE 2E74D 1NDOA 3AZCA 2XSOA 1ZRTE 1VF5D 4QUPA 2DE7D 3L72E 1FQTA 2BMQA 3GCEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NTK E;  2JO6 A;  2QPZ A;  1RFS A;  2BMR A;  2E4P A;  1EG9 A;  4H13 D;  2GBW A;  1ULI A;  2Q3W A;  4HM7 A;  3L73 E;  4NB9 A;  3L75 E;  4NBD A;  3GKE A;  2JZA A;  4NBH A;  2IBZ E;  4NBA A;  4QDF B;  5AEW A;  3VMG D;  2FYN C;  4NB8 A;  1SQV E;  4QDD A;  1WW9 A;  2GBX A;  4P1B H;  3TGU E;  1O7W A;  1UUW A;  3C0D A;  3CWB E;  2CKF A;  4NBE A;  1G8K B;  2QJK C;  4NBF D;  2E75 D;  2DE5 D;  2HMJ A;  3GTS A;  4HM3 A;  4QDF A;  4QUQ A;  4NBB D;  3GB4 A;  4NBG D;  3EQQ A;  4QDC A;  5CXM A;  3GKQ A;  4NBC A;  3VMG A;  2BCC E;  2FYU E;  3L74 E;  5KLI C;  2ZT9 D;  1O7P A;  2YFI A;  1VCK A;  4H44 D;  4HM2 A;  3GL2 A;  1BCC E;  1KB9 E;  2XR8 A;  3H1J E;  1L0L E;  1RIE A;  2DE7 A;  1NYK A;  4NBB A;  3GOB A;  5AEU A;  3N0Q A;  4H0L D;  2HMN A;  1KYO E;  3GL0 A;  5KKZ C;  4NBG A;  1L0N E;  2B1X A;  2I7F A;  1PP9 E;  2B24 A;  1NTM E;  4HJL A;  2DE6 D;  1SQX E;  3CX5 E;  1NTZ E;  4U3F E;  2YFJ A;  4HM6 A;  1JM1 A;  4HM4 A;  5BOK A;  1SQB E;  4HKV A;  2NVF A;  2BMO A;  1SJG A;  1Z01 A;  3GCF A;  3DQY A;  3CXH E;  2NVG A;  2XRX A;  1ULJ A;  1O7G A;  1Q90 C;  1SQP E;  1Z02 A;  3D89 A;  1O7M A;  4AIV A;  2NUK A;  4NB9 D;  4AAY B;  4HM8 A;  4QUR A;  1G8J B;  1WQL A;  4NBD D;  3VMI D;  2QJP C;  4PD4 E;  4NBH D;  4P1C H;  1UUV A;  1Z03 A;  2QJY C;  2NUM A;  2HMM A;  2YVJ B;  4NBF A;  2HMO A;  3VMH D;  5KLV E;  2DE5 A;  4NB8 D;  1SQQ E;  2E4Q A;  4OGQ D;  4EMJ B;  5HL4 A;  2HML A;  2YFL A;  2D2C D;  4HM1 A;  3VCA A;  2NWF A;  1BE3 E;  2XSH A;  1EZV E;  1VM9 A;  1NU1 E;  4NBE D;  1PPJ E;  3VMI A;  3GTE A;  3EN1 A;  3H1K E;  4HM0 A;  3VCP A;  1O7H A;  3GZY A;  3H1L E;  2HMK A;  4NBC D;  3L71 E;  2YIU C;  1P84 E;  4HM5 A;  4QCK A;  3L70 E;  3VMH A;  3H1H E;  2E76 D;  1O7N A;  2NVE A;  3H1I E;  2ZYL A;  3GZX A;  4PV1 D;  3FOU A;  2DE6 A;  4NBA D;  2A06 E;  3BCC E;  2E74 D;  1NDO A;  3AZC A;  2XSO A;  1ZRT E;  1VF5 D;  4QUP A;  2DE7 D;  3L72 E;  1FQT A;  2BMQ A;  3GCE A; 
#chains in the Genus database with same CATH topology
 1NTK E;  2JO6 A;  2QPZ A;  1RFS A;  2BMR A;  2E4P A;  1EG9 A;  4H13 D;  2GBW A;  1ULI A;  2Q3W A;  4HM7 A;  3L73 E;  4NB9 A;  3L75 E;  4NBD A;  3GKE A;  2JZA A;  4NBH A;  2IBZ E;  4NBA A;  4QDF B;  5AEW A;  3VMG D;  2FYN C;  4NB8 A;  1SQV E;  4QDD A;  1WW9 A;  2GBX A;  4P1B H;  3TGU E;  1O7W A;  1UUW A;  3C0D A;  3CWB E;  2CKF A;  4NBE A;  1G8K B;  2QJK C;  4NBF D;  2E75 D;  2DE5 D;  2HMJ A;  3GTS A;  4HM3 A;  4QDF A;  4QUQ A;  4NBB D;  3GB4 A;  4NBG D;  3EQQ A;  4QDC A;  5CXM A;  3GKQ A;  4NBC A;  3VMG A;  2BCC E;  2FYU E;  3L74 E;  5KLI C;  2ZT9 D;  1O7P A;  2YFI A;  1VCK A;  4H44 D;  4HM2 A;  3GL2 A;  1BCC E;  1KB9 E;  2XR8 A;  3H1J E;  1L0L E;  1RIE A;  2DE7 A;  1NYK A;  4NBB A;  3GOB A;  5AEU A;  3N0Q A;  4H0L D;  2HMN A;  1KYO E;  3GL0 A;  5KKZ C;  4NBG A;  1L0N E;  2B1X A;  2I7F A;  1PP9 E;  2B24 A;  1NTM E;  4HJL A;  2DE6 D;  1SQX E;  3CX5 E;  1NTZ E;  4U3F E;  2YFJ A;  4HM6 A;  1JM1 A;  4HM4 A;  5BOK A;  1SQB E;  4HKV A;  2NVF A;  2BMO A;  1SJG A;  1Z01 A;  3GCF A;  3DQY A;  3CXH E;  2NVG A;  2XRX A;  1ULJ A;  1O7G A;  1Q90 C;  1SQP E;  1Z02 A;  3D89 A;  1O7M A;  4AIV A;  2NUK A;  4NB9 D;  4AAY B;  4HM8 A;  4QUR A;  1G8J B;  1WQL A;  4NBD D;  3VMI D;  2QJP C;  4PD4 E;  4NBH D;  4P1C H;  1UUV A;  1Z03 A;  2QJY C;  2NUM A;  2HMM A;  2YVJ B;  4NBF A;  2HMO A;  3VMH D;  5KLV E;  2DE5 A;  4NB8 D;  1SQQ E;  2E4Q A;  4OGQ D;  4EMJ B;  5HL4 A;  2HML A;  2YFL A;  2D2C D;  4HM1 A;  3VCA A;  2NWF A;  1BE3 E;  2XSH A;  1EZV E;  1VM9 A;  1NU1 E;  4NBE D;  1PPJ E;  3VMI A;  3GTE A;  3EN1 A;  3H1K E;  4HM0 A;  3VCP A;  1O7H A;  3GZY A;  3H1L E;  2HMK A;  4NBC D;  3L71 E;  2YIU C;  1P84 E;  4HM5 A;  4QCK A;  3L70 E;  3VMH A;  3H1H E;  2E76 D;  1O7N A;  2NVE A;  3H1I E;  2ZYL A;  3GZX A;  4PV1 D;  3FOU A;  2DE6 A;  4NBA D;  2A06 E;  3BCC E;  2E74 D;  1NDO A;  3AZC A;  2XSO A;  1ZRT E;  1VF5 D;  4QUP A;  2DE7 D;  3L72 E;  1FQT A;  2BMQ A;  3GCE A; 
#chains in the Genus database with same CATH homology
 1NTK E;  2JO6 A;  2QPZ A;  1RFS A;  2BMR A;  2E4P A;  1EG9 A;  4H13 D;  2GBW A;  1ULI A;  2Q3W A;  4HM7 A;  3L73 E;  4NB9 A;  3L75 E;  4NBD A;  3GKE A;  2JZA A;  4NBH A;  2IBZ E;  4NBA A;  4QDF B;  5AEW A;  3VMG D;  2FYN C;  4NB8 A;  1SQV E;  4QDD A;  1WW9 A;  2GBX A;  4P1B H;  3TGU E;  1O7W A;  1UUW A;  3C0D A;  3CWB E;  2CKF A;  4NBE A;  1G8K B;  2QJK C;  4NBF D;  2E75 D;  2DE5 D;  2HMJ A;  3GTS A;  4HM3 A;  4QDF A;  4QUQ A;  4NBB D;  3GB4 A;  4NBG D;  3EQQ A;  4QDC A;  5CXM A;  3GKQ A;  4NBC A;  3VMG A;  2BCC E;  2FYU E;  3L74 E;  5KLI C;  2ZT9 D;  1O7P A;  2YFI A;  1VCK A;  4H44 D;  4HM2 A;  3GL2 A;  1BCC E;  1KB9 E;  2XR8 A;  3H1J E;  1L0L E;  1RIE A;  2DE7 A;  1NYK A;  4NBB A;  3GOB A;  5AEU A;  3N0Q A;  4H0L D;  2HMN A;  1KYO E;  3GL0 A;  5KKZ C;  4NBG A;  1L0N E;  2B1X A;  2I7F A;  1PP9 E;  2B24 A;  1NTM E;  4HJL A;  2DE6 D;  1SQX E;  3CX5 E;  1NTZ E;  4U3F E;  2YFJ A;  4HM6 A;  1JM1 A;  4HM4 A;  5BOK A;  1SQB E;  4HKV A;  2NVF A;  2BMO A;  1SJG A;  1Z01 A;  3GCF A;  3DQY A;  3CXH E;  2NVG A;  2XRX A;  1ULJ A;  1O7G A;  1Q90 C;  1SQP E;  1Z02 A;  3D89 A;  1O7M A;  4AIV A;  2NUK A;  4NB9 D;  4AAY B;  4HM8 A;  4QUR A;  1G8J B;  1WQL A;  4NBD D;  3VMI D;  2QJP C;  4PD4 E;  4NBH D;  4P1C H;  1UUV A;  1Z03 A;  2QJY C;  2NUM A;  2HMM A;  2YVJ B;  4NBF A;  2HMO A;  3VMH D;  5KLV E;  2DE5 A;  4NB8 D;  1SQQ E;  2E4Q A;  4OGQ D;  4EMJ B;  5HL4 A;  2HML A;  2YFL A;  2D2C D;  4HM1 A;  3VCA A;  2NWF A;  1BE3 E;  2XSH A;  1EZV E;  1VM9 A;  1NU1 E;  4NBE D;  1PPJ E;  3VMI A;  3GTE A;  3EN1 A;  3H1K E;  4HM0 A;  3VCP A;  1O7H A;  3GZY A;  3H1L E;  2HMK A;  4NBC D;  3L71 E;  2YIU C;  1P84 E;  4HM5 A;  4QCK A;  3L70 E;  3VMH A;  3H1H E;  2E76 D;  1O7N A;  2NVE A;  3H1I E;  2ZYL A;  3GZX A;  4PV1 D;  3FOU A;  2DE6 A;  4NBA D;  2A06 E;  3BCC E;  2E74 D;  1NDO A;  3AZC A;  2XSO A;  1ZRT E;  1VF5 D;  4QUP A;  2DE7 D;  3L72 E;  1FQT A;  2BMQ A;  3GCE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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