4HKVA

Naphthalene 1,2-dioxygenase bound to benzamide
Total Genus 165
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
165
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
publication title Naphthalene 1,2-Dioxygenase bound to benzamide
rcsb
source organism Pseudomonas sp. c18
molecule tags Oxidoreductase/oxidoreductase inhibitor
total genus 165
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hkvA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hkvA01
2E4QA 2E75D 2NUMA 5AEUA 4NBAD 2DE7D 1PPJE 2DE6D 3L70E 2QJKC 3CX5E 3GKQA 3L75E 1ULIA 1NTKE 2HMMA 2HMJA 2QPZA 1UUVA 2ZT9D 1VM9A 4AAYB 4NB8A 1JM1A 1O7MA 3VMHD 4H0LD 3D89A 1L0LE 2YIUC 2QJYC 2YVJB 1ZRTE 4NBFD 3AZCA 2D2CD 4NBDA 3GL2A 1ULJA 3GZXA 1NU1E 4QDFB 2HMLA 4PV1D 1NYKA 4NBED 4OGQD 1Z02A 5CXMA 4HM8A 2HMOA 2XR8A 3N0QA 2BMQA 2GBXA 4NBCA 2DE5D 4HM4A 4HM5A 2XRXA 5KLIC 3VMIA 1G8KB 4NBGA 3GTSA 2JZAA 4U3FE 1RFSA 4HM7A 4HM3A 2DE7A 2DE6A 4NBAA 3GCFA 4NBBA 3DQYA 4NB9D 3TGUE 4QUQA 1UUWA 3VMHA 4HKVA 1VCKA 2CKFA 5KLVE 4QUPA 3GCEA 2QJPC 3GTEA 4AIVA 4P1CH 3GZYA 3VCPA 2I7FA 2HMNA 3GL0A 3L72E 4HM2A 2JO6A 2YFIA 1SQXE 4P1BH 5KKZC 3CWBE 3VMID 2XSOA 2FYUE 4NBEA 3H1LE 2NWFA 1KYOE 3VMGD 1O7GA 4PD4E 1VF5D 2HMKA 2DE5A 3H1IE 4QDDA 1EG9A 1PP9E 4QCKA 1O7HA 3GB4A 4HM6A 4HM0A 2NVFA 2B24A 2YFJA 1L0NE 2A06E 2E4PA 4NBHD 3CXHE 2FYNC 1BE3E 1G8JB 4NB9A 1NTME 2YFLA 3L71E 1O7NA 3BCCE 3L74E 4NBFA 4QDCA 5AEWA 4HJLA 3VCAA 2E74D 3H1JE 4NB8D 2XSHA 2Q3WA 3C0DA 4HM1A 4NBBD 2NVEA 1Q90C 4EMJB 1WW9A 1FQTA 1EZVE 1SQQE 2IBZE 1BCCE 2ZYLA 1SQBE 1Z03A 1SQVE 2B1XA 3H1KE 1NDOA 2E76D 2NVGA 4H44D 1SJGA 1O7WA 2BMOA 2NUKA 4NBDD 4H13D 3VMGA 5BOKA 1O7PA 1RIEA 3GKEA 1P84E 1NTZE 3EN1A 3H1HE 1WQLA 2BMRA 3GOBA 3EQQA 5HL4A 4NBHA 4NBCD 4QDFA 1Z01A 3L73E 1SQPE 2BCCE 2GBWA 3FOUA 4NBGD 1KB9E 4QURA
chains in the Genus database with same CATH superfamily
2E4QA 2E75D 2NUMA 5AEUA 4NBAD 2DE7D 1PPJE 2DE6D 3L70E 2QJKC 3CX5E 3GKQA 3L75E 1ULIA 1NTKE 2HMMA 2HMJA 2QPZA 1UUVA 2ZT9D 1VM9A 4AAYB 4NB8A 1JM1A 1O7MA 3VMHD 4H0LD 3D89A 1L0LE 2YIUC 2QJYC 2YVJB 1ZRTE 4NBFD 3AZCA 2D2CD 4NBDA 3GL2A 1ULJA 3GZXA 1NU1E 4QDFB 2HMLA 4PV1D 1NYKA 4NBED 4OGQD 1Z02A 5CXMA 4HM8A 2HMOA 2XR8A 3N0QA 2BMQA 2GBXA 4NBCA 2DE5D 4HM4A 4HM5A 2XRXA 5KLIC 3VMIA 1G8KB 4NBGA 3GTSA 2JZAA 4U3FE 1RFSA 4HM7A 4HM3A 2DE7A 2DE6A 4NBAA 3GCFA 4NBBA 3DQYA 4NB9D 3TGUE 4QUQA 1UUWA 3VMHA 4HKVA 1VCKA 2CKFA 5KLVE 4QUPA 3GCEA 2QJPC 3GTEA 4AIVA 4P1CH 3GZYA 3VCPA 2I7FA 2HMNA 3GL0A 3L72E 4HM2A 2JO6A 2YFIA 1SQXE 4P1BH 5KKZC 3CWBE 3VMID 2XSOA 2FYUE 4NBEA 3H1LE 2NWFA 1KYOE 3VMGD 1O7GA 4PD4E 1VF5D 2HMKA 2DE5A 3H1IE 4QDDA 1EG9A 1PP9E 4QCKA 1O7HA 3GB4A 4HM6A 4HM0A 2NVFA 2B24A 2YFJA 1L0NE 2A06E 2E4PA 4NBHD 3CXHE 2FYNC 1BE3E 1G8JB 4NB9A 1NTME 2YFLA 3L71E 1O7NA 3BCCE 3L74E 4NBFA 4QDCA 5AEWA 4HJLA 3VCAA 2E74D 3H1JE 4NB8D 2XSHA 2Q3WA 3C0DA 4HM1A 4NBBD 2NVEA 1Q90C 4EMJB 1WW9A 1FQTA 1EZVE 1SQQE 2IBZE 1BCCE 2ZYLA 1SQBE 1Z03A 1SQVE 2B1XA 3H1KE 1NDOA 2E76D 2NVGA 4H44D 1SJGA 1O7WA 2BMOA 2NUKA 4NBDD 4H13D 3VMGA 5BOKA 1O7PA 1RIEA 3GKEA 1P84E 1NTZE 3EN1A 3H1HE 1WQLA 2BMRA 3GOBA 3EQQA 5HL4A 4NBHA 4NBCD 4QDFA 1Z01A 3L73E 1SQPE 2BCCE 2GBWA 3FOUA 4NBGD 1KB9E 4QURA
chains in the Genus database with same CATH topology
2E4QA 2E75D 2NUMA 5AEUA 4NBAD 2DE7D 1PPJE 2DE6D 3L70E 2QJKC 3CX5E 3GKQA 3L75E 1ULIA 1NTKE 2HMMA 2HMJA 2QPZA 1UUVA 2ZT9D 1VM9A 4AAYB 4NB8A 1JM1A 1O7MA 3VMHD 4H0LD 3D89A 1L0LE 2YIUC 2QJYC 2YVJB 1ZRTE 4NBFD 3AZCA 2D2CD 4NBDA 3GL2A 1ULJA 3GZXA 1NU1E 4QDFB 2HMLA 4PV1D 1NYKA 4NBED 4OGQD 1Z02A 5CXMA 4HM8A 2HMOA 2XR8A 3N0QA 2BMQA 2GBXA 4NBCA 2DE5D 4HM4A 4HM5A 2XRXA 5KLIC 3VMIA 1G8KB 4NBGA 3GTSA 2JZAA 4U3FE 1RFSA 4HM7A 4HM3A 2DE7A 2DE6A 4NBAA 3GCFA 4NBBA 3DQYA 4NB9D 3TGUE 4QUQA 1UUWA 3VMHA 4HKVA 1VCKA 2CKFA 5KLVE 4QUPA 3GCEA 2QJPC 3GTEA 4AIVA 4P1CH 3GZYA 3VCPA 2I7FA 2HMNA 3GL0A 3L72E 4HM2A 2JO6A 2YFIA 1SQXE 4P1BH 5KKZC 3CWBE 3VMID 2XSOA 2FYUE 4NBEA 3H1LE 2NWFA 1KYOE 3VMGD 1O7GA 4PD4E 1VF5D 2HMKA 2DE5A 3H1IE 4QDDA 1EG9A 1PP9E 4QCKA 1O7HA 3GB4A 4HM6A 4HM0A 2NVFA 2B24A 2YFJA 1L0NE 2A06E 2E4PA 4NBHD 3CXHE 2FYNC 1BE3E 1G8JB 4NB9A 1NTME 2YFLA 3L71E 1O7NA 3BCCE 3L74E 4NBFA 4QDCA 5AEWA 4HJLA 3VCAA 2E74D 3H1JE 4NB8D 2XSHA 2Q3WA 3C0DA 4HM1A 4NBBD 2NVEA 1Q90C 4EMJB 1WW9A 1FQTA 1EZVE 1SQQE 2IBZE 1BCCE 2ZYLA 1SQBE 1Z03A 1SQVE 2B1XA 3H1KE 1NDOA 2E76D 2NVGA 4H44D 1SJGA 1O7WA 2BMOA 2NUKA 4NBDD 4H13D 3VMGA 5BOKA 1O7PA 1RIEA 3GKEA 1P84E 1NTZE 3EN1A 3H1HE 1WQLA 2BMRA 3GOBA 3EQQA 5HL4A 4NBHA 4NBCD 4QDFA 1Z01A 3L73E 1SQPE 2BCCE 2GBWA 3FOUA 4NBGD 1KB9E 4QURA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E4Q A;  2E75 D;  2NUM A;  5AEU A;  4NBA D;  2DE7 D;  1PPJ E;  2DE6 D;  3L70 E;  2QJK C;  3CX5 E;  3GKQ A;  3L75 E;  1ULI A;  1NTK E;  2HMM A;  2HMJ A;  2QPZ A;  1UUV A;  2ZT9 D;  1VM9 A;  4AAY B;  4NB8 A;  1JM1 A;  1O7M A;  3VMH D;  4H0L D;  3D89 A;  1L0L E;  2YIU C;  2QJY C;  2YVJ B;  1ZRT E;  4NBF D;  3AZC A;  2D2C D;  4NBD A;  3GL2 A;  1ULJ A;  3GZX A;  1NU1 E;  4QDF B;  2HML A;  4PV1 D;  1NYK A;  4NBE D;  4OGQ D;  1Z02 A;  5CXM A;  4HM8 A;  2HMO A;  2XR8 A;  3N0Q A;  2BMQ A;  2GBX A;  4NBC A;  2DE5 D;  4HM4 A;  4HM5 A;  2XRX A;  5KLI C;  3VMI A;  1G8K B;  4NBG A;  3GTS A;  2JZA A;  4U3F E;  1RFS A;  4HM7 A;  4HM3 A;  2DE7 A;  2DE6 A;  4NBA A;  3GCF A;  4NBB A;  3DQY A;  4NB9 D;  3TGU E;  4QUQ A;  1UUW A;  3VMH A;  4HKV A;  1VCK A;  2CKF A;  5KLV E;  4QUP A;  3GCE A;  2QJP C;  3GTE A;  4AIV A;  4P1C H;  3GZY A;  3VCP A;  2I7F A;  2HMN A;  3GL0 A;  3L72 E;  4HM2 A;  2JO6 A;  2YFI A;  1SQX E;  4P1B H;  5KKZ C;  3CWB E;  3VMI D;  2XSO A;  2FYU E;  4NBE A;  3H1L E;  2NWF A;  1KYO E;  3VMG D;  1O7G A;  4PD4 E;  1VF5 D;  2HMK A;  2DE5 A;  3H1I E;  4QDD A;  1EG9 A;  1PP9 E;  4QCK A;  1O7H A;  3GB4 A;  4HM6 A;  4HM0 A;  2NVF A;  2B24 A;  2YFJ A;  1L0N E;  2A06 E;  2E4P A;  4NBH D;  3CXH E;  2FYN C;  1BE3 E;  1G8J B;  4NB9 A;  1NTM E;  2YFL A;  3L71 E;  1O7N A;  3BCC E;  3L74 E;  4NBF A;  4QDC A;  5AEW A;  4HJL A;  3VCA A;  2E74 D;  3H1J E;  4NB8 D;  2XSH A;  2Q3W A;  3C0D A;  4HM1 A;  4NBB D;  2NVE A;  1Q90 C;  4EMJ B;  1WW9 A;  1FQT A;  1EZV E;  1SQQ E;  2IBZ E;  1BCC E;  2ZYL A;  1SQB E;  1Z03 A;  1SQV E;  2B1X A;  3H1K E;  1NDO A;  2E76 D;  2NVG A;  4H44 D;  1SJG A;  1O7W A;  2BMO A;  2NUK A;  4NBD D;  4H13 D;  3VMG A;  5BOK A;  1O7P A;  1RIE A;  3GKE A;  1P84 E;  1NTZ E;  3EN1 A;  3H1H E;  1WQL A;  2BMR A;  3GOB A;  3EQQ A;  5HL4 A;  4NBH A;  4NBC D;  4QDF A;  1Z01 A;  3L73 E;  1SQP E;  2BCC E;  2GBW A;  3FOU A;  4NBG D;  1KB9 E;  4QUR A; 
#chains in the Genus database with same CATH topology
 2E4Q A;  2E75 D;  2NUM A;  5AEU A;  4NBA D;  2DE7 D;  1PPJ E;  2DE6 D;  3L70 E;  2QJK C;  3CX5 E;  3GKQ A;  3L75 E;  1ULI A;  1NTK E;  2HMM A;  2HMJ A;  2QPZ A;  1UUV A;  2ZT9 D;  1VM9 A;  4AAY B;  4NB8 A;  1JM1 A;  1O7M A;  3VMH D;  4H0L D;  3D89 A;  1L0L E;  2YIU C;  2QJY C;  2YVJ B;  1ZRT E;  4NBF D;  3AZC A;  2D2C D;  4NBD A;  3GL2 A;  1ULJ A;  3GZX A;  1NU1 E;  4QDF B;  2HML A;  4PV1 D;  1NYK A;  4NBE D;  4OGQ D;  1Z02 A;  5CXM A;  4HM8 A;  2HMO A;  2XR8 A;  3N0Q A;  2BMQ A;  2GBX A;  4NBC A;  2DE5 D;  4HM4 A;  4HM5 A;  2XRX A;  5KLI C;  3VMI A;  1G8K B;  4NBG A;  3GTS A;  2JZA A;  4U3F E;  1RFS A;  4HM7 A;  4HM3 A;  2DE7 A;  2DE6 A;  4NBA A;  3GCF A;  4NBB A;  3DQY A;  4NB9 D;  3TGU E;  4QUQ A;  1UUW A;  3VMH A;  4HKV A;  1VCK A;  2CKF A;  5KLV E;  4QUP A;  3GCE A;  2QJP C;  3GTE A;  4AIV A;  4P1C H;  3GZY A;  3VCP A;  2I7F A;  2HMN A;  3GL0 A;  3L72 E;  4HM2 A;  2JO6 A;  2YFI A;  1SQX E;  4P1B H;  5KKZ C;  3CWB E;  3VMI D;  2XSO A;  2FYU E;  4NBE A;  3H1L E;  2NWF A;  1KYO E;  3VMG D;  1O7G A;  4PD4 E;  1VF5 D;  2HMK A;  2DE5 A;  3H1I E;  4QDD A;  1EG9 A;  1PP9 E;  4QCK A;  1O7H A;  3GB4 A;  4HM6 A;  4HM0 A;  2NVF A;  2B24 A;  2YFJ A;  1L0N E;  2A06 E;  2E4P A;  4NBH D;  3CXH E;  2FYN C;  1BE3 E;  1G8J B;  4NB9 A;  1NTM E;  2YFL A;  3L71 E;  1O7N A;  3BCC E;  3L74 E;  4NBF A;  4QDC A;  5AEW A;  4HJL A;  3VCA A;  2E74 D;  3H1J E;  4NB8 D;  2XSH A;  2Q3W A;  3C0D A;  4HM1 A;  4NBB D;  2NVE A;  1Q90 C;  4EMJ B;  1WW9 A;  1FQT A;  1EZV E;  1SQQ E;  2IBZ E;  1BCC E;  2ZYL A;  1SQB E;  1Z03 A;  1SQV E;  2B1X A;  3H1K E;  1NDO A;  2E76 D;  2NVG A;  4H44 D;  1SJG A;  1O7W A;  2BMO A;  2NUK A;  4NBD D;  4H13 D;  3VMG A;  5BOK A;  1O7P A;  1RIE A;  3GKE A;  1P84 E;  1NTZ E;  3EN1 A;  3H1H E;  1WQL A;  2BMR A;  3GOB A;  3EQQ A;  5HL4 A;  4NBH A;  4NBC D;  4QDF A;  1Z01 A;  3L73 E;  1SQP E;  2BCC E;  2GBW A;  3FOU A;  4NBG D;  1KB9 E;  4QUR A; 
#chains in the Genus database with same CATH homology
 2E4Q A;  2E75 D;  2NUM A;  5AEU A;  4NBA D;  2DE7 D;  1PPJ E;  2DE6 D;  3L70 E;  2QJK C;  3CX5 E;  3GKQ A;  3L75 E;  1ULI A;  1NTK E;  2HMM A;  2HMJ A;  2QPZ A;  1UUV A;  2ZT9 D;  1VM9 A;  4AAY B;  4NB8 A;  1JM1 A;  1O7M A;  3VMH D;  4H0L D;  3D89 A;  1L0L E;  2YIU C;  2QJY C;  2YVJ B;  1ZRT E;  4NBF D;  3AZC A;  2D2C D;  4NBD A;  3GL2 A;  1ULJ A;  3GZX A;  1NU1 E;  4QDF B;  2HML A;  4PV1 D;  1NYK A;  4NBE D;  4OGQ D;  1Z02 A;  5CXM A;  4HM8 A;  2HMO A;  2XR8 A;  3N0Q A;  2BMQ A;  2GBX A;  4NBC A;  2DE5 D;  4HM4 A;  4HM5 A;  2XRX A;  5KLI C;  3VMI A;  1G8K B;  4NBG A;  3GTS A;  2JZA A;  4U3F E;  1RFS A;  4HM7 A;  4HM3 A;  2DE7 A;  2DE6 A;  4NBA A;  3GCF A;  4NBB A;  3DQY A;  4NB9 D;  3TGU E;  4QUQ A;  1UUW A;  3VMH A;  4HKV A;  1VCK A;  2CKF A;  5KLV E;  4QUP A;  3GCE A;  2QJP C;  3GTE A;  4AIV A;  4P1C H;  3GZY A;  3VCP A;  2I7F A;  2HMN A;  3GL0 A;  3L72 E;  4HM2 A;  2JO6 A;  2YFI A;  1SQX E;  4P1B H;  5KKZ C;  3CWB E;  3VMI D;  2XSO A;  2FYU E;  4NBE A;  3H1L E;  2NWF A;  1KYO E;  3VMG D;  1O7G A;  4PD4 E;  1VF5 D;  2HMK A;  2DE5 A;  3H1I E;  4QDD A;  1EG9 A;  1PP9 E;  4QCK A;  1O7H A;  3GB4 A;  4HM6 A;  4HM0 A;  2NVF A;  2B24 A;  2YFJ A;  1L0N E;  2A06 E;  2E4P A;  4NBH D;  3CXH E;  2FYN C;  1BE3 E;  1G8J B;  4NB9 A;  1NTM E;  2YFL A;  3L71 E;  1O7N A;  3BCC E;  3L74 E;  4NBF A;  4QDC A;  5AEW A;  4HJL A;  3VCA A;  2E74 D;  3H1J E;  4NB8 D;  2XSH A;  2Q3W A;  3C0D A;  4HM1 A;  4NBB D;  2NVE A;  1Q90 C;  4EMJ B;  1WW9 A;  1FQT A;  1EZV E;  1SQQ E;  2IBZ E;  1BCC E;  2ZYL A;  1SQB E;  1Z03 A;  1SQV E;  2B1X A;  3H1K E;  1NDO A;  2E76 D;  2NVG A;  4H44 D;  1SJG A;  1O7W A;  2BMO A;  2NUK A;  4NBD D;  4H13 D;  3VMG A;  5BOK A;  1O7P A;  1RIE A;  3GKE A;  1P84 E;  1NTZ E;  3EN1 A;  3H1H E;  1WQL A;  2BMR A;  3GOB A;  3EQQ A;  5HL4 A;  4NBH A;  4NBC D;  4QDF A;  1Z01 A;  3L73 E;  1SQP E;  2BCC E;  2GBW A;  3FOU A;  4NBG D;  1KB9 E;  4QUR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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