1O7HA

Naphthalene 1,2-dioxygenase with oxidized rieske iron sulphur center site.
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
publication title Crystal Structure of Naphthalene Dioxygenase: Side-on Binding of Dioxygen to Iron
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Oxidoreductase
total genus 163
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2002-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1o7hA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1o7hA01
2DE7D 2NUKA 3CX5E 2HMKA 3GOBA 4NB8A 1KB9E 4P1BH 4QUPA 3AZCA 2DE7A 2YFJA 3GCFA 4NBFD 3VMID 1NU1E 2E4PA 4HM5A 4QUQA 3EQQA 3N0QA 4NBGD 2QJYC 4OGQD 5AEWA 4NBFA 3L75E 3VMIA 1VM9A 2Q3WA 4NBGA 1NTME 2HMLA 2YVJB 3BCCE 4NBBD 3L71E 1G8KB 4NBHD 2IBZE 1SQXE 1SJGA 3GL2A 4NBBA 1BE3E 2BMQA 4NBHA 4QDCA 2JZAA 5HL4A 1SQBE 1SQPE 3H1HE 4HM0A 4QDDA 1EZVE 1O7PA 3GB4A 1UUWA 1ZRTE 4PV1D 3VMGD 5KKZC 2DE6D 2B1XA 1NYKA 4NBDD 3L73E 1WQLA 2XRXA 3VMGA 1P84E 2DE6A 4HKVA 2XSHA 4NBDA 2CKFA 1ULJA 2A06E 2BMOA 1KYOE 1VF5D 4NB9D 2E76D 2NVEA 4QDFB 3GCEA 4HM8A 4NB9A 2ZT9D 2YFIA 2YFLA 2HMJA 3C0DA 3D89A 3H1IE 3GZXA 3CWBE 2HMNA 4AAYB 2QJKC 2GBXA 3L72E 1ULIA 4U3FE 4PD4E 2BMRA 5KLVE 1SQQE 2HMMA 1Z03A 2NUMA 3GTSA 3TGUE 2GBWA 1RIEA 2E75D 2XSOA 3EN1A 1O7GA 2NWFA 3H1JE 4P1CH 4H0LD 1SQVE 2QJPC 4HM7A 3L74E 5AEUA 1BCCE 4HM4A 1O7NA 4EMJB 1PPJE 2FYNC 1NTKE 1O7MA 4NBCD 1L0LE 2ZYLA 4HM1A 5CXMA 3VCAA 4NBCA 4HM2A 1Z01A 3GL0A 1O7HA 2HMOA 2D2CD 1RFSA 2YIUC 3DQYA 1Q90C 1EG9A 1VCKA 2E74D 5KLIC 2QPZA 2I7FA 3H1KE 2JO6A 4QDFA 2E4QA 2FYUE 2BCCE 1G8JB 3FOUA 1NDOA 4H44D 3CXHE 4NBAD 5BOKA 4QCKA 3VCPA 1UUVA 3VMHD 1Z02A 1O7WA 2NVGA 4HM6A 2DE5D 2XR8A 4HM3A 4NBAA 4QURA 1NTZE 3GTEA 3VMHA 4HJLA 2NVFA 1FQTA 1L0NE 2DE5A 1WW9A 3GKQA 2B24A 4AIVA 1PP9E 3GZYA 1JM1A 3H1LE 4NBED 4NB8D 4NBEA 3L70E 3GKEA 4H13D
chains in the Genus database with same CATH superfamily
2DE7D 2NUKA 3CX5E 2HMKA 3GOBA 4NB8A 1KB9E 4P1BH 4QUPA 3AZCA 2DE7A 2YFJA 3GCFA 4NBFD 3VMID 1NU1E 2E4PA 4HM5A 4QUQA 3EQQA 3N0QA 4NBGD 2QJYC 4OGQD 5AEWA 4NBFA 3L75E 3VMIA 1VM9A 2Q3WA 4NBGA 1NTME 2HMLA 2YVJB 3BCCE 4NBBD 3L71E 1G8KB 4NBHD 2IBZE 1SQXE 1SJGA 3GL2A 4NBBA 1BE3E 2BMQA 4NBHA 4QDCA 2JZAA 5HL4A 1SQBE 1SQPE 3H1HE 4HM0A 4QDDA 1EZVE 1O7PA 3GB4A 1UUWA 1ZRTE 4PV1D 3VMGD 5KKZC 2DE6D 2B1XA 1NYKA 4NBDD 3L73E 1WQLA 2XRXA 3VMGA 1P84E 2DE6A 4HKVA 2XSHA 4NBDA 2CKFA 1ULJA 2A06E 2BMOA 1KYOE 1VF5D 4NB9D 2E76D 2NVEA 4QDFB 3GCEA 4HM8A 4NB9A 2ZT9D 2YFIA 2YFLA 2HMJA 3C0DA 3D89A 3H1IE 3GZXA 3CWBE 2HMNA 4AAYB 2QJKC 2GBXA 3L72E 1ULIA 4U3FE 4PD4E 2BMRA 5KLVE 1SQQE 2HMMA 1Z03A 2NUMA 3GTSA 3TGUE 2GBWA 1RIEA 2E75D 2XSOA 3EN1A 1O7GA 2NWFA 3H1JE 4P1CH 4H0LD 1SQVE 2QJPC 4HM7A 3L74E 5AEUA 1BCCE 4HM4A 1O7NA 4EMJB 1PPJE 2FYNC 1NTKE 1O7MA 4NBCD 1L0LE 2ZYLA 4HM1A 5CXMA 3VCAA 4NBCA 4HM2A 1Z01A 3GL0A 1O7HA 2HMOA 2D2CD 1RFSA 2YIUC 3DQYA 1Q90C 1EG9A 1VCKA 2E74D 5KLIC 2QPZA 2I7FA 3H1KE 2JO6A 4QDFA 2E4QA 2FYUE 2BCCE 1G8JB 3FOUA 1NDOA 4H44D 3CXHE 4NBAD 5BOKA 4QCKA 3VCPA 1UUVA 3VMHD 1Z02A 1O7WA 2NVGA 4HM6A 2DE5D 2XR8A 4HM3A 4NBAA 4QURA 1NTZE 3GTEA 3VMHA 4HJLA 2NVFA 1FQTA 1L0NE 2DE5A 1WW9A 3GKQA 2B24A 4AIVA 1PP9E 3GZYA 1JM1A 3H1LE 4NBED 4NB8D 4NBEA 3L70E 3GKEA 4H13D
chains in the Genus database with same CATH topology
2DE7D 2NUKA 3CX5E 2HMKA 3GOBA 4NB8A 1KB9E 4P1BH 4QUPA 3AZCA 2DE7A 2YFJA 3GCFA 4NBFD 3VMID 1NU1E 2E4PA 4HM5A 4QUQA 3EQQA 3N0QA 4NBGD 2QJYC 4OGQD 5AEWA 4NBFA 3L75E 3VMIA 1VM9A 2Q3WA 4NBGA 1NTME 2HMLA 2YVJB 3BCCE 4NBBD 3L71E 1G8KB 4NBHD 2IBZE 1SQXE 1SJGA 3GL2A 4NBBA 1BE3E 2BMQA 4NBHA 4QDCA 2JZAA 5HL4A 1SQBE 1SQPE 3H1HE 4HM0A 4QDDA 1EZVE 1O7PA 3GB4A 1UUWA 1ZRTE 4PV1D 3VMGD 5KKZC 2DE6D 2B1XA 1NYKA 4NBDD 3L73E 1WQLA 2XRXA 3VMGA 1P84E 2DE6A 4HKVA 2XSHA 4NBDA 2CKFA 1ULJA 2A06E 2BMOA 1KYOE 1VF5D 4NB9D 2E76D 2NVEA 4QDFB 3GCEA 4HM8A 4NB9A 2ZT9D 2YFIA 2YFLA 2HMJA 3C0DA 3D89A 3H1IE 3GZXA 3CWBE 2HMNA 4AAYB 2QJKC 2GBXA 3L72E 1ULIA 4U3FE 4PD4E 2BMRA 5KLVE 1SQQE 2HMMA 1Z03A 2NUMA 3GTSA 3TGUE 2GBWA 1RIEA 2E75D 2XSOA 3EN1A 1O7GA 2NWFA 3H1JE 4P1CH 4H0LD 1SQVE 2QJPC 4HM7A 3L74E 5AEUA 1BCCE 4HM4A 1O7NA 4EMJB 1PPJE 2FYNC 1NTKE 1O7MA 4NBCD 1L0LE 2ZYLA 4HM1A 5CXMA 3VCAA 4NBCA 4HM2A 1Z01A 3GL0A 1O7HA 2HMOA 2D2CD 1RFSA 2YIUC 3DQYA 1Q90C 1EG9A 1VCKA 2E74D 5KLIC 2QPZA 2I7FA 3H1KE 2JO6A 4QDFA 2E4QA 2FYUE 2BCCE 1G8JB 3FOUA 1NDOA 4H44D 3CXHE 4NBAD 5BOKA 4QCKA 3VCPA 1UUVA 3VMHD 1Z02A 1O7WA 2NVGA 4HM6A 2DE5D 2XR8A 4HM3A 4NBAA 4QURA 1NTZE 3GTEA 3VMHA 4HJLA 2NVFA 1FQTA 1L0NE 2DE5A 1WW9A 3GKQA 2B24A 4AIVA 1PP9E 3GZYA 1JM1A 3H1LE 4NBED 4NB8D 4NBEA 3L70E 3GKEA 4H13D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DE7 D;  2NUK A;  3CX5 E;  2HMK A;  3GOB A;  4NB8 A;  1KB9 E;  4P1B H;  4QUP A;  3AZC A;  2DE7 A;  2YFJ A;  3GCF A;  4NBF D;  3VMI D;  1NU1 E;  2E4P A;  4HM5 A;  4QUQ A;  3EQQ A;  3N0Q A;  4NBG D;  2QJY C;  4OGQ D;  5AEW A;  4NBF A;  3L75 E;  3VMI A;  1VM9 A;  2Q3W A;  4NBG A;  1NTM E;  2HML A;  2YVJ B;  3BCC E;  4NBB D;  3L71 E;  1G8K B;  4NBH D;  2IBZ E;  1SQX E;  1SJG A;  3GL2 A;  4NBB A;  1BE3 E;  2BMQ A;  4NBH A;  4QDC A;  2JZA A;  5HL4 A;  1SQB E;  1SQP E;  3H1H E;  4HM0 A;  4QDD A;  1EZV E;  1O7P A;  3GB4 A;  1UUW A;  1ZRT E;  4PV1 D;  3VMG D;  5KKZ C;  2DE6 D;  2B1X A;  1NYK A;  4NBD D;  3L73 E;  1WQL A;  2XRX A;  3VMG A;  1P84 E;  2DE6 A;  4HKV A;  2XSH A;  4NBD A;  2CKF A;  1ULJ A;  2A06 E;  2BMO A;  1KYO E;  1VF5 D;  4NB9 D;  2E76 D;  2NVE A;  4QDF B;  3GCE A;  4HM8 A;  4NB9 A;  2ZT9 D;  2YFI A;  2YFL A;  2HMJ A;  3C0D A;  3D89 A;  3H1I E;  3GZX A;  3CWB E;  2HMN A;  4AAY B;  2QJK C;  2GBX A;  3L72 E;  1ULI A;  4U3F E;  4PD4 E;  2BMR A;  5KLV E;  1SQQ E;  2HMM A;  1Z03 A;  2NUM A;  3GTS A;  3TGU E;  2GBW A;  1RIE A;  2E75 D;  2XSO A;  3EN1 A;  1O7G A;  2NWF A;  3H1J E;  4P1C H;  4H0L D;  1SQV E;  2QJP C;  4HM7 A;  3L74 E;  5AEU A;  1BCC E;  4HM4 A;  1O7N A;  4EMJ B;  1PPJ E;  2FYN C;  1NTK E;  1O7M A;  4NBC D;  1L0L E;  2ZYL A;  4HM1 A;  5CXM A;  3VCA A;  4NBC A;  4HM2 A;  1Z01 A;  3GL0 A;  1O7H A;  2HMO A;  2D2C D;  1RFS A;  2YIU C;  3DQY A;  1Q90 C;  1EG9 A;  1VCK A;  2E74 D;  5KLI C;  2QPZ A;  2I7F A;  3H1K E;  2JO6 A;  4QDF A;  2E4Q A;  2FYU E;  2BCC E;  1G8J B;  3FOU A;  1NDO A;  4H44 D;  3CXH E;  4NBA D;  5BOK A;  4QCK A;  3VCP A;  1UUV A;  3VMH D;  1Z02 A;  1O7W A;  2NVG A;  4HM6 A;  2DE5 D;  2XR8 A;  4HM3 A;  4NBA A;  4QUR A;  1NTZ E;  3GTE A;  3VMH A;  4HJL A;  2NVF A;  1FQT A;  1L0N E;  2DE5 A;  1WW9 A;  3GKQ A;  2B24 A;  4AIV A;  1PP9 E;  3GZY A;  1JM1 A;  3H1L E;  4NBE D;  4NB8 D;  4NBE A;  3L70 E;  3GKE A;  4H13 D; 
#chains in the Genus database with same CATH topology
 2DE7 D;  2NUK A;  3CX5 E;  2HMK A;  3GOB A;  4NB8 A;  1KB9 E;  4P1B H;  4QUP A;  3AZC A;  2DE7 A;  2YFJ A;  3GCF A;  4NBF D;  3VMI D;  1NU1 E;  2E4P A;  4HM5 A;  4QUQ A;  3EQQ A;  3N0Q A;  4NBG D;  2QJY C;  4OGQ D;  5AEW A;  4NBF A;  3L75 E;  3VMI A;  1VM9 A;  2Q3W A;  4NBG A;  1NTM E;  2HML A;  2YVJ B;  3BCC E;  4NBB D;  3L71 E;  1G8K B;  4NBH D;  2IBZ E;  1SQX E;  1SJG A;  3GL2 A;  4NBB A;  1BE3 E;  2BMQ A;  4NBH A;  4QDC A;  2JZA A;  5HL4 A;  1SQB E;  1SQP E;  3H1H E;  4HM0 A;  4QDD A;  1EZV E;  1O7P A;  3GB4 A;  1UUW A;  1ZRT E;  4PV1 D;  3VMG D;  5KKZ C;  2DE6 D;  2B1X A;  1NYK A;  4NBD D;  3L73 E;  1WQL A;  2XRX A;  3VMG A;  1P84 E;  2DE6 A;  4HKV A;  2XSH A;  4NBD A;  2CKF A;  1ULJ A;  2A06 E;  2BMO A;  1KYO E;  1VF5 D;  4NB9 D;  2E76 D;  2NVE A;  4QDF B;  3GCE A;  4HM8 A;  4NB9 A;  2ZT9 D;  2YFI A;  2YFL A;  2HMJ A;  3C0D A;  3D89 A;  3H1I E;  3GZX A;  3CWB E;  2HMN A;  4AAY B;  2QJK C;  2GBX A;  3L72 E;  1ULI A;  4U3F E;  4PD4 E;  2BMR A;  5KLV E;  1SQQ E;  2HMM A;  1Z03 A;  2NUM A;  3GTS A;  3TGU E;  2GBW A;  1RIE A;  2E75 D;  2XSO A;  3EN1 A;  1O7G A;  2NWF A;  3H1J E;  4P1C H;  4H0L D;  1SQV E;  2QJP C;  4HM7 A;  3L74 E;  5AEU A;  1BCC E;  4HM4 A;  1O7N A;  4EMJ B;  1PPJ E;  2FYN C;  1NTK E;  1O7M A;  4NBC D;  1L0L E;  2ZYL A;  4HM1 A;  5CXM A;  3VCA A;  4NBC A;  4HM2 A;  1Z01 A;  3GL0 A;  1O7H A;  2HMO A;  2D2C D;  1RFS A;  2YIU C;  3DQY A;  1Q90 C;  1EG9 A;  1VCK A;  2E74 D;  5KLI C;  2QPZ A;  2I7F A;  3H1K E;  2JO6 A;  4QDF A;  2E4Q A;  2FYU E;  2BCC E;  1G8J B;  3FOU A;  1NDO A;  4H44 D;  3CXH E;  4NBA D;  5BOK A;  4QCK A;  3VCP A;  1UUV A;  3VMH D;  1Z02 A;  1O7W A;  2NVG A;  4HM6 A;  2DE5 D;  2XR8 A;  4HM3 A;  4NBA A;  4QUR A;  1NTZ E;  3GTE A;  3VMH A;  4HJL A;  2NVF A;  1FQT A;  1L0N E;  2DE5 A;  1WW9 A;  3GKQ A;  2B24 A;  4AIV A;  1PP9 E;  3GZY A;  1JM1 A;  3H1L E;  4NBE D;  4NB8 D;  4NBE A;  3L70 E;  3GKE A;  4H13 D; 
#chains in the Genus database with same CATH homology
 2DE7 D;  2NUK A;  3CX5 E;  2HMK A;  3GOB A;  4NB8 A;  1KB9 E;  4P1B H;  4QUP A;  3AZC A;  2DE7 A;  2YFJ A;  3GCF A;  4NBF D;  3VMI D;  1NU1 E;  2E4P A;  4HM5 A;  4QUQ A;  3EQQ A;  3N0Q A;  4NBG D;  2QJY C;  4OGQ D;  5AEW A;  4NBF A;  3L75 E;  3VMI A;  1VM9 A;  2Q3W A;  4NBG A;  1NTM E;  2HML A;  2YVJ B;  3BCC E;  4NBB D;  3L71 E;  1G8K B;  4NBH D;  2IBZ E;  1SQX E;  1SJG A;  3GL2 A;  4NBB A;  1BE3 E;  2BMQ A;  4NBH A;  4QDC A;  2JZA A;  5HL4 A;  1SQB E;  1SQP E;  3H1H E;  4HM0 A;  4QDD A;  1EZV E;  1O7P A;  3GB4 A;  1UUW A;  1ZRT E;  4PV1 D;  3VMG D;  5KKZ C;  2DE6 D;  2B1X A;  1NYK A;  4NBD D;  3L73 E;  1WQL A;  2XRX A;  3VMG A;  1P84 E;  2DE6 A;  4HKV A;  2XSH A;  4NBD A;  2CKF A;  1ULJ A;  2A06 E;  2BMO A;  1KYO E;  1VF5 D;  4NB9 D;  2E76 D;  2NVE A;  4QDF B;  3GCE A;  4HM8 A;  4NB9 A;  2ZT9 D;  2YFI A;  2YFL A;  2HMJ A;  3C0D A;  3D89 A;  3H1I E;  3GZX A;  3CWB E;  2HMN A;  4AAY B;  2QJK C;  2GBX A;  3L72 E;  1ULI A;  4U3F E;  4PD4 E;  2BMR A;  5KLV E;  1SQQ E;  2HMM A;  1Z03 A;  2NUM A;  3GTS A;  3TGU E;  2GBW A;  1RIE A;  2E75 D;  2XSO A;  3EN1 A;  1O7G A;  2NWF A;  3H1J E;  4P1C H;  4H0L D;  1SQV E;  2QJP C;  4HM7 A;  3L74 E;  5AEU A;  1BCC E;  4HM4 A;  1O7N A;  4EMJ B;  1PPJ E;  2FYN C;  1NTK E;  1O7M A;  4NBC D;  1L0L E;  2ZYL A;  4HM1 A;  5CXM A;  3VCA A;  4NBC A;  4HM2 A;  1Z01 A;  3GL0 A;  1O7H A;  2HMO A;  2D2C D;  1RFS A;  2YIU C;  3DQY A;  1Q90 C;  1EG9 A;  1VCK A;  2E74 D;  5KLI C;  2QPZ A;  2I7F A;  3H1K E;  2JO6 A;  4QDF A;  2E4Q A;  2FYU E;  2BCC E;  1G8J B;  3FOU A;  1NDO A;  4H44 D;  3CXH E;  4NBA D;  5BOK A;  4QCK A;  3VCP A;  1UUV A;  3VMH D;  1Z02 A;  1O7W A;  2NVG A;  4HM6 A;  2DE5 D;  2XR8 A;  4HM3 A;  4NBA A;  4QUR A;  1NTZ E;  3GTE A;  3VMH A;  4HJL A;  2NVF A;  1FQT A;  1L0N E;  2DE5 A;  1WW9 A;  3GKQ A;  2B24 A;  4AIV A;  1PP9 E;  3GZY A;  1JM1 A;  3H1L E;  4NBE D;  4NB8 D;  4NBE A;  3L70 E;  3GKE A;  4H13 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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