1O7HA

Naphthalene 1,2-dioxygenase with oxidized rieske iron sulphur center site.
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
447
structure length
447
Chain Sequence
b'MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
publication title Crystal Structure of Naphthalene Dioxygenase: Side-on Binding of Dioxygen to Iron
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Oxidoreductase
total genus 163
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2002-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1o7hA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1o7hA01
2XRXA 4P1BH 4NBEA 2DE7D 1EG9A 2IBZE 2QPZA 3GTEA 3VMGD 1Z03A 2DE6A 2YFJA 4H0LD 4NB8A 1SQXE 1RIEA 2BCCE 4QUPA 3EQQA 1PPJE 1O7MA 4NBED 1G8KB 2NUKA 1O7HA 2DE6D 5CXMA 4NB8D 2FYUE 2E4QA 4PD4E 3VCAA 2JO6A 4HKVA 4HM7A 3GB4A 1O7NA 3DQYA 1SQPE 1VF5D 2ZYLA 2A06E 2BMQA 4HM8A 1VM9A 3N0QA 1WW9A 5HL4A 3FOUA 4PV1D 3GOBA 1O7GA 4AAYB 2E75D 1ULJA 2E76D 4HM1A 3H1HE 3L75E 1O7PA 5KLIC 4H44D 2YIUC 3L73E 2HMNA 2BMOA 4QURA 1Z02A 4NBFA 1KYOE 1RFSA 2NVEA 2NWFA 4EMJB 4QDFA 4HM6A 1O7WA 5AEUA 1SQBE 1P84E 1NYKA 1L0NE 1VCKA 3AZCA 2Q3WA 4QCKA 1NU1E 5BOKA 1SQQE 4U3FE 3TGUE 3H1JE 1ZRTE 2E74D 5AEWA 4HM0A 3L71E 3C0DA 3VCPA 3L72E 4NBFD 4NBAA 2DE5A 1SQVE 4HJLA 1BE3E 3GCEA 2HMMA 1SJGA 3GKEA 3VMIA 2NUMA 4H13D 5KLVE 1NTKE 2XR8A 3H1IE 2B1XA 4NBAD 5KKZC 2DE5D 2ZT9D 3VMHA 3GTSA 1KB9E 2HMKA 2YFIA 3D89A 2CKFA 3EN1A 2GBXA 1FQTA 4QDFB 4QDCA 3VMID 2YFLA 1G8JB 4QUQA 3L70E 4NB9A 4P1CH 3GL0A 3VMHD 1BCCE 1WQLA 4NBBA 2GBWA 1NTME 4OGQD 3CXHE 4NB9D 1Z01A 4NBCA 2HMOA 2JZAA 3L74E 1EZVE 3GKQA 4QDDA 1Q90C 2B24A 4NBBD 2D2CD 4HM5A 1L0LE 2NVFA 3CWBE 1PP9E 2HMLA 4HM3A 4NBHA 1NDOA 4NBCD 1ULIA 4NBDA 2NVGA 2QJYC 3H1KE 2E4PA 2FYNC 1UUWA 2BMRA 2QJKC 3CX5E 4NBGA 3BCCE 2XSHA 3GZYA 4HM2A 3GZXA 3GCFA 4NBHD 4NBDD 4HM4A 2I7FA 2DE7A 3VMGA 2QJPC 2XSOA 2YVJB 3GL2A 4NBGD 1UUVA 2HMJA 3H1LE 1JM1A 4AIVA 1NTZE
chains in the Genus database with same CATH superfamily
2XRXA 4P1BH 4NBEA 2DE7D 1EG9A 2IBZE 2QPZA 3GTEA 3VMGD 1Z03A 2DE6A 2YFJA 4H0LD 4NB8A 1SQXE 1RIEA 2BCCE 4QUPA 3EQQA 1PPJE 1O7MA 4NBED 1G8KB 2NUKA 1O7HA 2DE6D 5CXMA 4NB8D 2FYUE 2E4QA 4PD4E 3VCAA 2JO6A 4HKVA 4HM7A 3GB4A 1O7NA 3DQYA 1SQPE 1VF5D 2ZYLA 2A06E 2BMQA 4HM8A 1VM9A 3N0QA 1WW9A 5HL4A 3FOUA 4PV1D 3GOBA 1O7GA 4AAYB 2E75D 1ULJA 2E76D 4HM1A 3H1HE 3L75E 1O7PA 5KLIC 4H44D 2YIUC 3L73E 2HMNA 2BMOA 4QURA 1Z02A 4NBFA 1KYOE 1RFSA 2NVEA 2NWFA 4EMJB 4QDFA 4HM6A 1O7WA 5AEUA 1SQBE 1P84E 1NYKA 1L0NE 1VCKA 3AZCA 2Q3WA 4QCKA 1NU1E 5BOKA 1SQQE 4U3FE 3TGUE 3H1JE 1ZRTE 2E74D 5AEWA 4HM0A 3L71E 3C0DA 3VCPA 3L72E 4NBFD 4NBAA 2DE5A 1SQVE 4HJLA 1BE3E 3GCEA 2HMMA 1SJGA 3GKEA 3VMIA 2NUMA 4H13D 5KLVE 1NTKE 2XR8A 3H1IE 2B1XA 4NBAD 5KKZC 2DE5D 2ZT9D 3VMHA 3GTSA 1KB9E 2HMKA 2YFIA 3D89A 2CKFA 3EN1A 2GBXA 1FQTA 4QDFB 4QDCA 3VMID 2YFLA 1G8JB 4QUQA 3L70E 4NB9A 4P1CH 3GL0A 3VMHD 1BCCE 1WQLA 4NBBA 2GBWA 1NTME 4OGQD 3CXHE 4NB9D 1Z01A 4NBCA 2HMOA 2JZAA 3L74E 1EZVE 3GKQA 4QDDA 1Q90C 2B24A 4NBBD 2D2CD 4HM5A 1L0LE 2NVFA 3CWBE 1PP9E 2HMLA 4HM3A 4NBHA 1NDOA 4NBCD 1ULIA 4NBDA 2NVGA 2QJYC 3H1KE 2E4PA 2FYNC 1UUWA 2BMRA 2QJKC 3CX5E 4NBGA 3BCCE 2XSHA 3GZYA 4HM2A 3GZXA 3GCFA 4NBHD 4NBDD 4HM4A 2I7FA 2DE7A 3VMGA 2QJPC 2XSOA 2YVJB 3GL2A 4NBGD 1UUVA 2HMJA 3H1LE 1JM1A 4AIVA 1NTZE
chains in the Genus database with same CATH topology
2XRXA 4P1BH 4NBEA 2DE7D 1EG9A 2IBZE 2QPZA 3GTEA 3VMGD 1Z03A 2DE6A 2YFJA 4H0LD 4NB8A 1SQXE 1RIEA 2BCCE 4QUPA 3EQQA 1PPJE 1O7MA 4NBED 1G8KB 2NUKA 1O7HA 2DE6D 5CXMA 4NB8D 2FYUE 2E4QA 4PD4E 3VCAA 2JO6A 4HKVA 4HM7A 3GB4A 1O7NA 3DQYA 1SQPE 1VF5D 2ZYLA 2A06E 2BMQA 4HM8A 1VM9A 3N0QA 1WW9A 5HL4A 3FOUA 4PV1D 3GOBA 1O7GA 4AAYB 2E75D 1ULJA 2E76D 4HM1A 3H1HE 3L75E 1O7PA 5KLIC 4H44D 2YIUC 3L73E 2HMNA 2BMOA 4QURA 1Z02A 4NBFA 1KYOE 1RFSA 2NVEA 2NWFA 4EMJB 4QDFA 4HM6A 1O7WA 5AEUA 1SQBE 1P84E 1NYKA 1L0NE 1VCKA 3AZCA 2Q3WA 4QCKA 1NU1E 5BOKA 1SQQE 4U3FE 3TGUE 3H1JE 1ZRTE 2E74D 5AEWA 4HM0A 3L71E 3C0DA 3VCPA 3L72E 4NBFD 4NBAA 2DE5A 1SQVE 4HJLA 1BE3E 3GCEA 2HMMA 1SJGA 3GKEA 3VMIA 2NUMA 4H13D 5KLVE 1NTKE 2XR8A 3H1IE 2B1XA 4NBAD 5KKZC 2DE5D 2ZT9D 3VMHA 3GTSA 1KB9E 2HMKA 2YFIA 3D89A 2CKFA 3EN1A 2GBXA 1FQTA 4QDFB 4QDCA 3VMID 2YFLA 1G8JB 4QUQA 3L70E 4NB9A 4P1CH 3GL0A 3VMHD 1BCCE 1WQLA 4NBBA 2GBWA 1NTME 4OGQD 3CXHE 4NB9D 1Z01A 4NBCA 2HMOA 2JZAA 3L74E 1EZVE 3GKQA 4QDDA 1Q90C 2B24A 4NBBD 2D2CD 4HM5A 1L0LE 2NVFA 3CWBE 1PP9E 2HMLA 4HM3A 4NBHA 1NDOA 4NBCD 1ULIA 4NBDA 2NVGA 2QJYC 3H1KE 2E4PA 2FYNC 1UUWA 2BMRA 2QJKC 3CX5E 4NBGA 3BCCE 2XSHA 3GZYA 4HM2A 3GZXA 3GCFA 4NBHD 4NBDD 4HM4A 2I7FA 2DE7A 3VMGA 2QJPC 2XSOA 2YVJB 3GL2A 4NBGD 1UUVA 2HMJA 3H1LE 1JM1A 4AIVA 1NTZE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XRX A;  4P1B H;  4NBE A;  2DE7 D;  1EG9 A;  2IBZ E;  2QPZ A;  3GTE A;  3VMG D;  1Z03 A;  2DE6 A;  2YFJ A;  4H0L D;  4NB8 A;  1SQX E;  1RIE A;  2BCC E;  4QUP A;  3EQQ A;  1PPJ E;  1O7M A;  4NBE D;  1G8K B;  2NUK A;  1O7H A;  2DE6 D;  5CXM A;  4NB8 D;  2FYU E;  2E4Q A;  4PD4 E;  3VCA A;  2JO6 A;  4HKV A;  4HM7 A;  3GB4 A;  1O7N A;  3DQY A;  1SQP E;  1VF5 D;  2ZYL A;  2A06 E;  2BMQ A;  4HM8 A;  1VM9 A;  3N0Q A;  1WW9 A;  5HL4 A;  3FOU A;  4PV1 D;  3GOB A;  1O7G A;  4AAY B;  2E75 D;  1ULJ A;  2E76 D;  4HM1 A;  3H1H E;  3L75 E;  1O7P A;  5KLI C;  4H44 D;  2YIU C;  3L73 E;  2HMN A;  2BMO A;  4QUR A;  1Z02 A;  4NBF A;  1KYO E;  1RFS A;  2NVE A;  2NWF A;  4EMJ B;  4QDF A;  4HM6 A;  1O7W A;  5AEU A;  1SQB E;  1P84 E;  1NYK A;  1L0N E;  1VCK A;  3AZC A;  2Q3W A;  4QCK A;  1NU1 E;  5BOK A;  1SQQ E;  4U3F E;  3TGU E;  3H1J E;  1ZRT E;  2E74 D;  5AEW A;  4HM0 A;  3L71 E;  3C0D A;  3VCP A;  3L72 E;  4NBF D;  4NBA A;  2DE5 A;  1SQV E;  4HJL A;  1BE3 E;  3GCE A;  2HMM A;  1SJG A;  3GKE A;  3VMI A;  2NUM A;  4H13 D;  5KLV E;  1NTK E;  2XR8 A;  3H1I E;  2B1X A;  4NBA D;  5KKZ C;  2DE5 D;  2ZT9 D;  3VMH A;  3GTS A;  1KB9 E;  2HMK A;  2YFI A;  3D89 A;  2CKF A;  3EN1 A;  2GBX A;  1FQT A;  4QDF B;  4QDC A;  3VMI D;  2YFL A;  1G8J B;  4QUQ A;  3L70 E;  4NB9 A;  4P1C H;  3GL0 A;  3VMH D;  1BCC E;  1WQL A;  4NBB A;  2GBW A;  1NTM E;  4OGQ D;  3CXH E;  4NB9 D;  1Z01 A;  4NBC A;  2HMO A;  2JZA A;  3L74 E;  1EZV E;  3GKQ A;  4QDD A;  1Q90 C;  2B24 A;  4NBB D;  2D2C D;  4HM5 A;  1L0L E;  2NVF A;  3CWB E;  1PP9 E;  2HML A;  4HM3 A;  4NBH A;  1NDO A;  4NBC D;  1ULI A;  4NBD A;  2NVG A;  2QJY C;  3H1K E;  2E4P A;  2FYN C;  1UUW A;  2BMR A;  2QJK C;  3CX5 E;  4NBG A;  3BCC E;  2XSH A;  3GZY A;  4HM2 A;  3GZX A;  3GCF A;  4NBH D;  4NBD D;  4HM4 A;  2I7F A;  2DE7 A;  3VMG A;  2QJP C;  2XSO A;  2YVJ B;  3GL2 A;  4NBG D;  1UUV A;  2HMJ A;  3H1L E;  1JM1 A;  4AIV A;  1NTZ E; 
#chains in the Genus database with same CATH topology
 2XRX A;  4P1B H;  4NBE A;  2DE7 D;  1EG9 A;  2IBZ E;  2QPZ A;  3GTE A;  3VMG D;  1Z03 A;  2DE6 A;  2YFJ A;  4H0L D;  4NB8 A;  1SQX E;  1RIE A;  2BCC E;  4QUP A;  3EQQ A;  1PPJ E;  1O7M A;  4NBE D;  1G8K B;  2NUK A;  1O7H A;  2DE6 D;  5CXM A;  4NB8 D;  2FYU E;  2E4Q A;  4PD4 E;  3VCA A;  2JO6 A;  4HKV A;  4HM7 A;  3GB4 A;  1O7N A;  3DQY A;  1SQP E;  1VF5 D;  2ZYL A;  2A06 E;  2BMQ A;  4HM8 A;  1VM9 A;  3N0Q A;  1WW9 A;  5HL4 A;  3FOU A;  4PV1 D;  3GOB A;  1O7G A;  4AAY B;  2E75 D;  1ULJ A;  2E76 D;  4HM1 A;  3H1H E;  3L75 E;  1O7P A;  5KLI C;  4H44 D;  2YIU C;  3L73 E;  2HMN A;  2BMO A;  4QUR A;  1Z02 A;  4NBF A;  1KYO E;  1RFS A;  2NVE A;  2NWF A;  4EMJ B;  4QDF A;  4HM6 A;  1O7W A;  5AEU A;  1SQB E;  1P84 E;  1NYK A;  1L0N E;  1VCK A;  3AZC A;  2Q3W A;  4QCK A;  1NU1 E;  5BOK A;  1SQQ E;  4U3F E;  3TGU E;  3H1J E;  1ZRT E;  2E74 D;  5AEW A;  4HM0 A;  3L71 E;  3C0D A;  3VCP A;  3L72 E;  4NBF D;  4NBA A;  2DE5 A;  1SQV E;  4HJL A;  1BE3 E;  3GCE A;  2HMM A;  1SJG A;  3GKE A;  3VMI A;  2NUM A;  4H13 D;  5KLV E;  1NTK E;  2XR8 A;  3H1I E;  2B1X A;  4NBA D;  5KKZ C;  2DE5 D;  2ZT9 D;  3VMH A;  3GTS A;  1KB9 E;  2HMK A;  2YFI A;  3D89 A;  2CKF A;  3EN1 A;  2GBX A;  1FQT A;  4QDF B;  4QDC A;  3VMI D;  2YFL A;  1G8J B;  4QUQ A;  3L70 E;  4NB9 A;  4P1C H;  3GL0 A;  3VMH D;  1BCC E;  1WQL A;  4NBB A;  2GBW A;  1NTM E;  4OGQ D;  3CXH E;  4NB9 D;  1Z01 A;  4NBC A;  2HMO A;  2JZA A;  3L74 E;  1EZV E;  3GKQ A;  4QDD A;  1Q90 C;  2B24 A;  4NBB D;  2D2C D;  4HM5 A;  1L0L E;  2NVF A;  3CWB E;  1PP9 E;  2HML A;  4HM3 A;  4NBH A;  1NDO A;  4NBC D;  1ULI A;  4NBD A;  2NVG A;  2QJY C;  3H1K E;  2E4P A;  2FYN C;  1UUW A;  2BMR A;  2QJK C;  3CX5 E;  4NBG A;  3BCC E;  2XSH A;  3GZY A;  4HM2 A;  3GZX A;  3GCF A;  4NBH D;  4NBD D;  4HM4 A;  2I7F A;  2DE7 A;  3VMG A;  2QJP C;  2XSO A;  2YVJ B;  3GL2 A;  4NBG D;  1UUV A;  2HMJ A;  3H1L E;  1JM1 A;  4AIV A;  1NTZ E; 
#chains in the Genus database with same CATH homology
 2XRX A;  4P1B H;  4NBE A;  2DE7 D;  1EG9 A;  2IBZ E;  2QPZ A;  3GTE A;  3VMG D;  1Z03 A;  2DE6 A;  2YFJ A;  4H0L D;  4NB8 A;  1SQX E;  1RIE A;  2BCC E;  4QUP A;  3EQQ A;  1PPJ E;  1O7M A;  4NBE D;  1G8K B;  2NUK A;  1O7H A;  2DE6 D;  5CXM A;  4NB8 D;  2FYU E;  2E4Q A;  4PD4 E;  3VCA A;  2JO6 A;  4HKV A;  4HM7 A;  3GB4 A;  1O7N A;  3DQY A;  1SQP E;  1VF5 D;  2ZYL A;  2A06 E;  2BMQ A;  4HM8 A;  1VM9 A;  3N0Q A;  1WW9 A;  5HL4 A;  3FOU A;  4PV1 D;  3GOB A;  1O7G A;  4AAY B;  2E75 D;  1ULJ A;  2E76 D;  4HM1 A;  3H1H E;  3L75 E;  1O7P A;  5KLI C;  4H44 D;  2YIU C;  3L73 E;  2HMN A;  2BMO A;  4QUR A;  1Z02 A;  4NBF A;  1KYO E;  1RFS A;  2NVE A;  2NWF A;  4EMJ B;  4QDF A;  4HM6 A;  1O7W A;  5AEU A;  1SQB E;  1P84 E;  1NYK A;  1L0N E;  1VCK A;  3AZC A;  2Q3W A;  4QCK A;  1NU1 E;  5BOK A;  1SQQ E;  4U3F E;  3TGU E;  3H1J E;  1ZRT E;  2E74 D;  5AEW A;  4HM0 A;  3L71 E;  3C0D A;  3VCP A;  3L72 E;  4NBF D;  4NBA A;  2DE5 A;  1SQV E;  4HJL A;  1BE3 E;  3GCE A;  2HMM A;  1SJG A;  3GKE A;  3VMI A;  2NUM A;  4H13 D;  5KLV E;  1NTK E;  2XR8 A;  3H1I E;  2B1X A;  4NBA D;  5KKZ C;  2DE5 D;  2ZT9 D;  3VMH A;  3GTS A;  1KB9 E;  2HMK A;  2YFI A;  3D89 A;  2CKF A;  3EN1 A;  2GBX A;  1FQT A;  4QDF B;  4QDC A;  3VMI D;  2YFL A;  1G8J B;  4QUQ A;  3L70 E;  4NB9 A;  4P1C H;  3GL0 A;  3VMH D;  1BCC E;  1WQL A;  4NBB A;  2GBW A;  1NTM E;  4OGQ D;  3CXH E;  4NB9 D;  1Z01 A;  4NBC A;  2HMO A;  2JZA A;  3L74 E;  1EZV E;  3GKQ A;  4QDD A;  1Q90 C;  2B24 A;  4NBB D;  2D2C D;  4HM5 A;  1L0L E;  2NVF A;  3CWB E;  1PP9 E;  2HML A;  4HM3 A;  4NBH A;  1NDO A;  4NBC D;  1ULI A;  4NBD A;  2NVG A;  2QJY C;  3H1K E;  2E4P A;  2FYN C;  1UUW A;  2BMR A;  2QJK C;  3CX5 E;  4NBG A;  3BCC E;  2XSH A;  3GZY A;  4HM2 A;  3GZX A;  3GCF A;  4NBH D;  4NBD D;  4HM4 A;  2I7F A;  2DE7 A;  3VMG A;  2QJP C;  2XSO A;  2YVJ B;  3GL2 A;  4NBG D;  1UUV A;  2HMJ A;  3H1L E;  1JM1 A;  4AIV A;  1NTZ E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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