2HMOA

Crystal structure of naphthalene 1,2-dioxygenase bound to 3-nitrotoluene.
Total Genus 163
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
446
structure length
446
Chain Sequence
b'MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase alpha subunit
publication title Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase.
pubmed doi rcsb
source organism Pseudomonas sp.
molecule tags Oxidoreductase
total genus 163
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2006-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2hmoA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2hmoA01
4NBAA 1VM9A 3C0DA 3FOUA 4AAYB 2XSHA 3GZXA 4QURA 4H44D 3GOBA 2DE7D 4QUQA 4U3FE 4NBED 1SJGA 4HM7A 1WQLA 3BCCE 4HM2A 3GKEA 2QJKC 3VMHA 1O7HA 1G8JB 3VMGA 4NBDD 1O7WA 3L70E 1ULIA 2HMOA 2Q3WA 2XRXA 1SQXE 4HM8A 1Z03A 1O7PA 4NBCD 2YFIA 4H13D 4P1BH 4QDDA 3H1KE 4QCKA 1EG9A 2E75D 4P1CH 2YVJB 3DQYA 4NBBD 2JZAA 4QDFB 1ZRTE 5KLVE 1RIEA 4HM6A 2BMRA 3VMID 3EQQA 4NB9A 2ZYLA 2DE6A 1SQVE 4QDFA 5KLIC 1EZVE 1NTME 1BE3E 2NUKA 3CWBE 1NTKE 3CXHE 2GBWA 1G8KB 2NVEA 2XR8A 4PD4E 2NVGA 2ZT9D 1Z01A 4NBBA 1JM1A 3GCEA 4H0LD 2HMNA 1SQBE 2HMKA 1O7NA 2DE5D 2QPZA 2NWFA 2FYUE 4QDCA 2E4QA 1SQPE 1WW9A 4AIVA 2I7FA 2E4PA 2B24A 3GKQA 3H1LE 2DE7A 4NBEA 4HKVA 4EMJB 2IBZE 2B1XA 2HMJA 1Q90C 3L71E 4NBDA 3H1HE 4HM0A 4NB8D 5CXMA 1PP9E 3GCFA 3L74E 1NDOA 1UUVA 3H1JE 4HM3A 2DE5A 4HM4A 2HMLA 3D89A 4NBHD 4NBCA 5AEWA 2E76D 3VCPA 1Z02A 2YFLA 2CKFA 1O7GA 3N0QA 1SQQE 1O7MA 4NBFD 3VCAA 1KB9E 3GL2A 4HM1A 2E74D 1NYKA 5HL4A 4QUPA 2NUMA 3H1IE 3AZCA 5AEUA 3VMIA 1RFSA 3VMHD 4NBGD 3GZYA 2HMMA 4NB8A 2FYNC 3TGUE 2BCCE 3L75E 4NBHA 3EN1A 2QJPC 2NVFA 1NTZE 2YFJA 1PPJE 1VCKA 3GL0A 3L73E 4NBFA 1BCCE 4OGQD 1UUWA 1P84E 1VF5D 2BMOA 4NBAD 2BMQA 3GB4A 3GTSA 2XSOA 2D2CD 4NBGA 2A06E 3GTEA 1FQTA 4NB9D 1ULJA 2DE6D 4PV1D 4HJLA 2QJYC 2YIUC 2GBXA 1NU1E 3L72E 4HM5A 3VMGD 2JO6A 3CX5E 5BOKA 1KYOE 5KKZC 1L0NE 1L0LE
chains in the Genus database with same CATH superfamily
4NBAA 1VM9A 3C0DA 3FOUA 4AAYB 2XSHA 3GZXA 4QURA 4H44D 3GOBA 2DE7D 4QUQA 4U3FE 4NBED 1SJGA 4HM7A 1WQLA 3BCCE 4HM2A 3GKEA 2QJKC 3VMHA 1O7HA 1G8JB 3VMGA 4NBDD 1O7WA 3L70E 1ULIA 2HMOA 2Q3WA 2XRXA 1SQXE 4HM8A 1Z03A 1O7PA 4NBCD 2YFIA 4H13D 4P1BH 4QDDA 3H1KE 4QCKA 1EG9A 2E75D 4P1CH 2YVJB 3DQYA 4NBBD 2JZAA 4QDFB 1ZRTE 5KLVE 1RIEA 4HM6A 2BMRA 3VMID 3EQQA 4NB9A 2ZYLA 2DE6A 1SQVE 4QDFA 5KLIC 1EZVE 1NTME 1BE3E 2NUKA 3CWBE 1NTKE 3CXHE 2GBWA 1G8KB 2NVEA 2XR8A 4PD4E 2NVGA 2ZT9D 1Z01A 4NBBA 1JM1A 3GCEA 4H0LD 2HMNA 1SQBE 2HMKA 1O7NA 2DE5D 2QPZA 2NWFA 2FYUE 4QDCA 2E4QA 1SQPE 1WW9A 4AIVA 2I7FA 2E4PA 2B24A 3GKQA 3H1LE 2DE7A 4NBEA 4HKVA 4EMJB 2IBZE 2B1XA 2HMJA 1Q90C 3L71E 4NBDA 3H1HE 4HM0A 4NB8D 5CXMA 1PP9E 3GCFA 3L74E 1NDOA 1UUVA 3H1JE 4HM3A 2DE5A 4HM4A 2HMLA 3D89A 4NBHD 4NBCA 5AEWA 2E76D 3VCPA 1Z02A 2YFLA 2CKFA 1O7GA 3N0QA 1SQQE 1O7MA 4NBFD 3VCAA 1KB9E 3GL2A 4HM1A 2E74D 1NYKA 5HL4A 4QUPA 2NUMA 3H1IE 3AZCA 5AEUA 3VMIA 1RFSA 3VMHD 4NBGD 3GZYA 2HMMA 4NB8A 2FYNC 3TGUE 2BCCE 3L75E 4NBHA 3EN1A 2QJPC 2NVFA 1NTZE 2YFJA 1PPJE 1VCKA 3GL0A 3L73E 4NBFA 1BCCE 4OGQD 1UUWA 1P84E 1VF5D 2BMOA 4NBAD 2BMQA 3GB4A 3GTSA 2XSOA 2D2CD 4NBGA 2A06E 3GTEA 1FQTA 4NB9D 1ULJA 2DE6D 4PV1D 4HJLA 2QJYC 2YIUC 2GBXA 1NU1E 3L72E 4HM5A 3VMGD 2JO6A 3CX5E 5BOKA 1KYOE 5KKZC 1L0NE 1L0LE
chains in the Genus database with same CATH topology
4NBAA 1VM9A 3C0DA 3FOUA 4AAYB 2XSHA 3GZXA 4QURA 4H44D 3GOBA 2DE7D 4QUQA 4U3FE 4NBED 1SJGA 4HM7A 1WQLA 3BCCE 4HM2A 3GKEA 2QJKC 3VMHA 1O7HA 1G8JB 3VMGA 4NBDD 1O7WA 3L70E 1ULIA 2HMOA 2Q3WA 2XRXA 1SQXE 4HM8A 1Z03A 1O7PA 4NBCD 2YFIA 4H13D 4P1BH 4QDDA 3H1KE 4QCKA 1EG9A 2E75D 4P1CH 2YVJB 3DQYA 4NBBD 2JZAA 4QDFB 1ZRTE 5KLVE 1RIEA 4HM6A 2BMRA 3VMID 3EQQA 4NB9A 2ZYLA 2DE6A 1SQVE 4QDFA 5KLIC 1EZVE 1NTME 1BE3E 2NUKA 3CWBE 1NTKE 3CXHE 2GBWA 1G8KB 2NVEA 2XR8A 4PD4E 2NVGA 2ZT9D 1Z01A 4NBBA 1JM1A 3GCEA 4H0LD 2HMNA 1SQBE 2HMKA 1O7NA 2DE5D 2QPZA 2NWFA 2FYUE 4QDCA 2E4QA 1SQPE 1WW9A 4AIVA 2I7FA 2E4PA 2B24A 3GKQA 3H1LE 2DE7A 4NBEA 4HKVA 4EMJB 2IBZE 2B1XA 2HMJA 1Q90C 3L71E 4NBDA 3H1HE 4HM0A 4NB8D 5CXMA 1PP9E 3GCFA 3L74E 1NDOA 1UUVA 3H1JE 4HM3A 2DE5A 4HM4A 2HMLA 3D89A 4NBHD 4NBCA 5AEWA 2E76D 3VCPA 1Z02A 2YFLA 2CKFA 1O7GA 3N0QA 1SQQE 1O7MA 4NBFD 3VCAA 1KB9E 3GL2A 4HM1A 2E74D 1NYKA 5HL4A 4QUPA 2NUMA 3H1IE 3AZCA 5AEUA 3VMIA 1RFSA 3VMHD 4NBGD 3GZYA 2HMMA 4NB8A 2FYNC 3TGUE 2BCCE 3L75E 4NBHA 3EN1A 2QJPC 2NVFA 1NTZE 2YFJA 1PPJE 1VCKA 3GL0A 3L73E 4NBFA 1BCCE 4OGQD 1UUWA 1P84E 1VF5D 2BMOA 4NBAD 2BMQA 3GB4A 3GTSA 2XSOA 2D2CD 4NBGA 2A06E 3GTEA 1FQTA 4NB9D 1ULJA 2DE6D 4PV1D 4HJLA 2QJYC 2YIUC 2GBXA 1NU1E 3L72E 4HM5A 3VMGD 2JO6A 3CX5E 5BOKA 1KYOE 5KKZC 1L0NE 1L0LE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NBA A;  1VM9 A;  3C0D A;  3FOU A;  4AAY B;  2XSH A;  3GZX A;  4QUR A;  4H44 D;  3GOB A;  2DE7 D;  4QUQ A;  4U3F E;  4NBE D;  1SJG A;  4HM7 A;  1WQL A;  3BCC E;  4HM2 A;  3GKE A;  2QJK C;  3VMH A;  1O7H A;  1G8J B;  3VMG A;  4NBD D;  1O7W A;  3L70 E;  1ULI A;  2HMO A;  2Q3W A;  2XRX A;  1SQX E;  4HM8 A;  1Z03 A;  1O7P A;  4NBC D;  2YFI A;  4H13 D;  4P1B H;  4QDD A;  3H1K E;  4QCK A;  1EG9 A;  2E75 D;  4P1C H;  2YVJ B;  3DQY A;  4NBB D;  2JZA A;  4QDF B;  1ZRT E;  5KLV E;  1RIE A;  4HM6 A;  2BMR A;  3VMI D;  3EQQ A;  4NB9 A;  2ZYL A;  2DE6 A;  1SQV E;  4QDF A;  5KLI C;  1EZV E;  1NTM E;  1BE3 E;  2NUK A;  3CWB E;  1NTK E;  3CXH E;  2GBW A;  1G8K B;  2NVE A;  2XR8 A;  4PD4 E;  2NVG A;  2ZT9 D;  1Z01 A;  4NBB A;  1JM1 A;  3GCE A;  4H0L D;  2HMN A;  1SQB E;  2HMK A;  1O7N A;  2DE5 D;  2QPZ A;  2NWF A;  2FYU E;  4QDC A;  2E4Q A;  1SQP E;  1WW9 A;  4AIV A;  2I7F A;  2E4P A;  2B24 A;  3GKQ A;  3H1L E;  2DE7 A;  4NBE A;  4HKV A;  4EMJ B;  2IBZ E;  2B1X A;  2HMJ A;  1Q90 C;  3L71 E;  4NBD A;  3H1H E;  4HM0 A;  4NB8 D;  5CXM A;  1PP9 E;  3GCF A;  3L74 E;  1NDO A;  1UUV A;  3H1J E;  4HM3 A;  2DE5 A;  4HM4 A;  2HML A;  3D89 A;  4NBH D;  4NBC A;  5AEW A;  2E76 D;  3VCP A;  1Z02 A;  2YFL A;  2CKF A;  1O7G A;  3N0Q A;  1SQQ E;  1O7M A;  4NBF D;  3VCA A;  1KB9 E;  3GL2 A;  4HM1 A;  2E74 D;  1NYK A;  5HL4 A;  4QUP A;  2NUM A;  3H1I E;  3AZC A;  5AEU A;  3VMI A;  1RFS A;  3VMH D;  4NBG D;  3GZY A;  2HMM A;  4NB8 A;  2FYN C;  3TGU E;  2BCC E;  3L75 E;  4NBH A;  3EN1 A;  2QJP C;  2NVF A;  1NTZ E;  2YFJ A;  1PPJ E;  1VCK A;  3GL0 A;  3L73 E;  4NBF A;  1BCC E;  4OGQ D;  1UUW A;  1P84 E;  1VF5 D;  2BMO A;  4NBA D;  2BMQ A;  3GB4 A;  3GTS A;  2XSO A;  2D2C D;  4NBG A;  2A06 E;  3GTE A;  1FQT A;  4NB9 D;  1ULJ A;  2DE6 D;  4PV1 D;  4HJL A;  2QJY C;  2YIU C;  2GBX A;  1NU1 E;  3L72 E;  4HM5 A;  3VMG D;  2JO6 A;  3CX5 E;  5BOK A;  1KYO E;  5KKZ C;  1L0N E;  1L0L E; 
#chains in the Genus database with same CATH topology
 4NBA A;  1VM9 A;  3C0D A;  3FOU A;  4AAY B;  2XSH A;  3GZX A;  4QUR A;  4H44 D;  3GOB A;  2DE7 D;  4QUQ A;  4U3F E;  4NBE D;  1SJG A;  4HM7 A;  1WQL A;  3BCC E;  4HM2 A;  3GKE A;  2QJK C;  3VMH A;  1O7H A;  1G8J B;  3VMG A;  4NBD D;  1O7W A;  3L70 E;  1ULI A;  2HMO A;  2Q3W A;  2XRX A;  1SQX E;  4HM8 A;  1Z03 A;  1O7P A;  4NBC D;  2YFI A;  4H13 D;  4P1B H;  4QDD A;  3H1K E;  4QCK A;  1EG9 A;  2E75 D;  4P1C H;  2YVJ B;  3DQY A;  4NBB D;  2JZA A;  4QDF B;  1ZRT E;  5KLV E;  1RIE A;  4HM6 A;  2BMR A;  3VMI D;  3EQQ A;  4NB9 A;  2ZYL A;  2DE6 A;  1SQV E;  4QDF A;  5KLI C;  1EZV E;  1NTM E;  1BE3 E;  2NUK A;  3CWB E;  1NTK E;  3CXH E;  2GBW A;  1G8K B;  2NVE A;  2XR8 A;  4PD4 E;  2NVG A;  2ZT9 D;  1Z01 A;  4NBB A;  1JM1 A;  3GCE A;  4H0L D;  2HMN A;  1SQB E;  2HMK A;  1O7N A;  2DE5 D;  2QPZ A;  2NWF A;  2FYU E;  4QDC A;  2E4Q A;  1SQP E;  1WW9 A;  4AIV A;  2I7F A;  2E4P A;  2B24 A;  3GKQ A;  3H1L E;  2DE7 A;  4NBE A;  4HKV A;  4EMJ B;  2IBZ E;  2B1X A;  2HMJ A;  1Q90 C;  3L71 E;  4NBD A;  3H1H E;  4HM0 A;  4NB8 D;  5CXM A;  1PP9 E;  3GCF A;  3L74 E;  1NDO A;  1UUV A;  3H1J E;  4HM3 A;  2DE5 A;  4HM4 A;  2HML A;  3D89 A;  4NBH D;  4NBC A;  5AEW A;  2E76 D;  3VCP A;  1Z02 A;  2YFL A;  2CKF A;  1O7G A;  3N0Q A;  1SQQ E;  1O7M A;  4NBF D;  3VCA A;  1KB9 E;  3GL2 A;  4HM1 A;  2E74 D;  1NYK A;  5HL4 A;  4QUP A;  2NUM A;  3H1I E;  3AZC A;  5AEU A;  3VMI A;  1RFS A;  3VMH D;  4NBG D;  3GZY A;  2HMM A;  4NB8 A;  2FYN C;  3TGU E;  2BCC E;  3L75 E;  4NBH A;  3EN1 A;  2QJP C;  2NVF A;  1NTZ E;  2YFJ A;  1PPJ E;  1VCK A;  3GL0 A;  3L73 E;  4NBF A;  1BCC E;  4OGQ D;  1UUW A;  1P84 E;  1VF5 D;  2BMO A;  4NBA D;  2BMQ A;  3GB4 A;  3GTS A;  2XSO A;  2D2C D;  4NBG A;  2A06 E;  3GTE A;  1FQT A;  4NB9 D;  1ULJ A;  2DE6 D;  4PV1 D;  4HJL A;  2QJY C;  2YIU C;  2GBX A;  1NU1 E;  3L72 E;  4HM5 A;  3VMG D;  2JO6 A;  3CX5 E;  5BOK A;  1KYO E;  5KKZ C;  1L0N E;  1L0L E; 
#chains in the Genus database with same CATH homology
 4NBA A;  1VM9 A;  3C0D A;  3FOU A;  4AAY B;  2XSH A;  3GZX A;  4QUR A;  4H44 D;  3GOB A;  2DE7 D;  4QUQ A;  4U3F E;  4NBE D;  1SJG A;  4HM7 A;  1WQL A;  3BCC E;  4HM2 A;  3GKE A;  2QJK C;  3VMH A;  1O7H A;  1G8J B;  3VMG A;  4NBD D;  1O7W A;  3L70 E;  1ULI A;  2HMO A;  2Q3W A;  2XRX A;  1SQX E;  4HM8 A;  1Z03 A;  1O7P A;  4NBC D;  2YFI A;  4H13 D;  4P1B H;  4QDD A;  3H1K E;  4QCK A;  1EG9 A;  2E75 D;  4P1C H;  2YVJ B;  3DQY A;  4NBB D;  2JZA A;  4QDF B;  1ZRT E;  5KLV E;  1RIE A;  4HM6 A;  2BMR A;  3VMI D;  3EQQ A;  4NB9 A;  2ZYL A;  2DE6 A;  1SQV E;  4QDF A;  5KLI C;  1EZV E;  1NTM E;  1BE3 E;  2NUK A;  3CWB E;  1NTK E;  3CXH E;  2GBW A;  1G8K B;  2NVE A;  2XR8 A;  4PD4 E;  2NVG A;  2ZT9 D;  1Z01 A;  4NBB A;  1JM1 A;  3GCE A;  4H0L D;  2HMN A;  1SQB E;  2HMK A;  1O7N A;  2DE5 D;  2QPZ A;  2NWF A;  2FYU E;  4QDC A;  2E4Q A;  1SQP E;  1WW9 A;  4AIV A;  2I7F A;  2E4P A;  2B24 A;  3GKQ A;  3H1L E;  2DE7 A;  4NBE A;  4HKV A;  4EMJ B;  2IBZ E;  2B1X A;  2HMJ A;  1Q90 C;  3L71 E;  4NBD A;  3H1H E;  4HM0 A;  4NB8 D;  5CXM A;  1PP9 E;  3GCF A;  3L74 E;  1NDO A;  1UUV A;  3H1J E;  4HM3 A;  2DE5 A;  4HM4 A;  2HML A;  3D89 A;  4NBH D;  4NBC A;  5AEW A;  2E76 D;  3VCP A;  1Z02 A;  2YFL A;  2CKF A;  1O7G A;  3N0Q A;  1SQQ E;  1O7M A;  4NBF D;  3VCA A;  1KB9 E;  3GL2 A;  4HM1 A;  2E74 D;  1NYK A;  5HL4 A;  4QUP A;  2NUM A;  3H1I E;  3AZC A;  5AEU A;  3VMI A;  1RFS A;  3VMH D;  4NBG D;  3GZY A;  2HMM A;  4NB8 A;  2FYN C;  3TGU E;  2BCC E;  3L75 E;  4NBH A;  3EN1 A;  2QJP C;  2NVF A;  1NTZ E;  2YFJ A;  1PPJ E;  1VCK A;  3GL0 A;  3L73 E;  4NBF A;  1BCC E;  4OGQ D;  1UUW A;  1P84 E;  1VF5 D;  2BMO A;  4NBA D;  2BMQ A;  3GB4 A;  3GTS A;  2XSO A;  2D2C D;  4NBG A;  2A06 E;  3GTE A;  1FQT A;  4NB9 D;  1ULJ A;  2DE6 D;  4PV1 D;  4HJL A;  2QJY C;  2YIU C;  2GBX A;  1NU1 E;  3L72 E;  4HM5 A;  3VMG D;  2JO6 A;  3CX5 E;  5BOK A;  1KYO E;  5KKZ C;  1L0N E;  1L0L E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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