2HMOA

Crystal structure of naphthalene 1,2-dioxygenase bound to 3-nitrotoluene.
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase alpha subunit
publication title Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase.
pubmed doi rcsb
source organism Pseudomonas sp.
molecule tags Oxidoreductase
total genus 163
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2006-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2hmoA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2hmoA01
3L71E 1SQBE 1RIEA 1NU1E 4NBGD 2YFIA 2XSOA 3GOBA 3VMGD 3VMID 1VCKA 4NBBA 4H13D 1BE3E 2DE7D 2I7FA 2HMLA 3TGUE 3VCAA 4NBHA 2NVFA 3CXHE 4NBFA 3L73E 2DE6A 1Z02A 1BCCE 2HMNA 1Z03A 1FQTA 1VM9A 3EN1A 2NUKA 4NBBD 2YFLA 4OGQD 1SQXE 3GL2A 2HMMA 1PPJE 2XRXA 2ZT9D 4AAYB 4NBAA 4NBHD 3GZXA 1P84E 2IBZE 2E4QA 1UUWA 3VCPA 2YVJB 4HM8A 1O7HA 4P1CH 2E74D 4NBCA 1O7WA 4NBDA 2DE5D 3L70E 1PP9E 3GTEA 2E76D 4H44D 4HM0A 2D2CD 1Z01A 3GCEA 4QURA 3AZCA 5AEWA 4AIVA 3VMHA 3GL0A 3DQYA 3H1HE 4H0LD 5HL4A 4NB9A 2FYNC 2YFJA 1Q90C 2BMRA 2A06E 2GBWA 2YIUC 1ULJA 1L0LE 4QDCA 1O7PA 2HMOA 3H1IE 4HM5A 2XSHA 4PV1D 1EZVE 1L0NE 4EMJB 4HM1A 1JM1A 4QUPA 4NBEA 3N0QA 2QPZA 4U3FE 2BMOA 3L75E 4NBFD 2E75D 1EG9A 2NUMA 4NB8A 1NDOA 2DE6D 2JZAA 2HMKA 3D89A 2E4PA 3CWBE 3GTSA 2Q3WA 2BMQA 1SQQE 2FYUE 2B24A 2HMJA 4NBAD 3GB4A 4HM2A 5KLVE 3VMIA 1WW9A 3GKQA 3H1KE 3H1LE 1G8JB 2DE7A 5CXMA 4NB8D 1NTZE 2NVEA 4NBCD 1NYKA 4NBDD 1ULIA 5BOKA 3GKEA 1O7NA 1WQLA 2CKFA 4QDFB 1NTME 4QDDA 2JO6A 3FOUA 3VMHD 1O7MA 4HJLA 3GCFA 4NB9D 2QJKC 3GZYA 1SQVE 1VF5D 5KKZC 1ZRTE 4PD4E 5KLIC 1G8KB 4QCKA 4QUQA 2ZYLA 1KYOE 1RFSA 1UUVA 2B1XA 3L74E 2GBXA 4NBGA 2NWFA 1SJGA 2XR8A 4NBED 3VMGA 4QDFA 4HM6A 3EQQA 4HKVA 2DE5A 4HM4A 2BCCE 3L72E 2QJPC 2QJYC 3C0DA 1O7GA 1KB9E 4HM7A 1SQPE 5AEUA 4P1BH 3BCCE 3H1JE 3CX5E 1NTKE 4HM3A 2NVGA
chains in the Genus database with same CATH superfamily
3L71E 1SQBE 1RIEA 1NU1E 4NBGD 2YFIA 2XSOA 3GOBA 3VMGD 3VMID 1VCKA 4NBBA 4H13D 1BE3E 2DE7D 2I7FA 2HMLA 3TGUE 3VCAA 4NBHA 2NVFA 3CXHE 4NBFA 3L73E 2DE6A 1Z02A 1BCCE 2HMNA 1Z03A 1FQTA 1VM9A 3EN1A 2NUKA 4NBBD 2YFLA 4OGQD 1SQXE 3GL2A 2HMMA 1PPJE 2XRXA 2ZT9D 4AAYB 4NBAA 4NBHD 3GZXA 1P84E 2IBZE 2E4QA 1UUWA 3VCPA 2YVJB 4HM8A 1O7HA 4P1CH 2E74D 4NBCA 1O7WA 4NBDA 2DE5D 3L70E 1PP9E 3GTEA 2E76D 4H44D 4HM0A 2D2CD 1Z01A 3GCEA 4QURA 3AZCA 5AEWA 4AIVA 3VMHA 3GL0A 3DQYA 3H1HE 4H0LD 5HL4A 4NB9A 2FYNC 2YFJA 1Q90C 2BMRA 2A06E 2GBWA 2YIUC 1ULJA 1L0LE 4QDCA 1O7PA 2HMOA 3H1IE 4HM5A 2XSHA 4PV1D 1EZVE 1L0NE 4EMJB 4HM1A 1JM1A 4QUPA 4NBEA 3N0QA 2QPZA 4U3FE 2BMOA 3L75E 4NBFD 2E75D 1EG9A 2NUMA 4NB8A 1NDOA 2DE6D 2JZAA 2HMKA 3D89A 2E4PA 3CWBE 3GTSA 2Q3WA 2BMQA 1SQQE 2FYUE 2B24A 2HMJA 4NBAD 3GB4A 4HM2A 5KLVE 3VMIA 1WW9A 3GKQA 3H1KE 3H1LE 1G8JB 2DE7A 5CXMA 4NB8D 1NTZE 2NVEA 4NBCD 1NYKA 4NBDD 1ULIA 5BOKA 3GKEA 1O7NA 1WQLA 2CKFA 4QDFB 1NTME 4QDDA 2JO6A 3FOUA 3VMHD 1O7MA 4HJLA 3GCFA 4NB9D 2QJKC 3GZYA 1SQVE 1VF5D 5KKZC 1ZRTE 4PD4E 5KLIC 1G8KB 4QCKA 4QUQA 2ZYLA 1KYOE 1RFSA 1UUVA 2B1XA 3L74E 2GBXA 4NBGA 2NWFA 1SJGA 2XR8A 4NBED 3VMGA 4QDFA 4HM6A 3EQQA 4HKVA 2DE5A 4HM4A 2BCCE 3L72E 2QJPC 2QJYC 3C0DA 1O7GA 1KB9E 4HM7A 1SQPE 5AEUA 4P1BH 3BCCE 3H1JE 3CX5E 1NTKE 4HM3A 2NVGA
chains in the Genus database with same CATH topology
3L71E 1SQBE 1RIEA 1NU1E 4NBGD 2YFIA 2XSOA 3GOBA 3VMGD 3VMID 1VCKA 4NBBA 4H13D 1BE3E 2DE7D 2I7FA 2HMLA 3TGUE 3VCAA 4NBHA 2NVFA 3CXHE 4NBFA 3L73E 2DE6A 1Z02A 1BCCE 2HMNA 1Z03A 1FQTA 1VM9A 3EN1A 2NUKA 4NBBD 2YFLA 4OGQD 1SQXE 3GL2A 2HMMA 1PPJE 2XRXA 2ZT9D 4AAYB 4NBAA 4NBHD 3GZXA 1P84E 2IBZE 2E4QA 1UUWA 3VCPA 2YVJB 4HM8A 1O7HA 4P1CH 2E74D 4NBCA 1O7WA 4NBDA 2DE5D 3L70E 1PP9E 3GTEA 2E76D 4H44D 4HM0A 2D2CD 1Z01A 3GCEA 4QURA 3AZCA 5AEWA 4AIVA 3VMHA 3GL0A 3DQYA 3H1HE 4H0LD 5HL4A 4NB9A 2FYNC 2YFJA 1Q90C 2BMRA 2A06E 2GBWA 2YIUC 1ULJA 1L0LE 4QDCA 1O7PA 2HMOA 3H1IE 4HM5A 2XSHA 4PV1D 1EZVE 1L0NE 4EMJB 4HM1A 1JM1A 4QUPA 4NBEA 3N0QA 2QPZA 4U3FE 2BMOA 3L75E 4NBFD 2E75D 1EG9A 2NUMA 4NB8A 1NDOA 2DE6D 2JZAA 2HMKA 3D89A 2E4PA 3CWBE 3GTSA 2Q3WA 2BMQA 1SQQE 2FYUE 2B24A 2HMJA 4NBAD 3GB4A 4HM2A 5KLVE 3VMIA 1WW9A 3GKQA 3H1KE 3H1LE 1G8JB 2DE7A 5CXMA 4NB8D 1NTZE 2NVEA 4NBCD 1NYKA 4NBDD 1ULIA 5BOKA 3GKEA 1O7NA 1WQLA 2CKFA 4QDFB 1NTME 4QDDA 2JO6A 3FOUA 3VMHD 1O7MA 4HJLA 3GCFA 4NB9D 2QJKC 3GZYA 1SQVE 1VF5D 5KKZC 1ZRTE 4PD4E 5KLIC 1G8KB 4QCKA 4QUQA 2ZYLA 1KYOE 1RFSA 1UUVA 2B1XA 3L74E 2GBXA 4NBGA 2NWFA 1SJGA 2XR8A 4NBED 3VMGA 4QDFA 4HM6A 3EQQA 4HKVA 2DE5A 4HM4A 2BCCE 3L72E 2QJPC 2QJYC 3C0DA 1O7GA 1KB9E 4HM7A 1SQPE 5AEUA 4P1BH 3BCCE 3H1JE 3CX5E 1NTKE 4HM3A 2NVGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L71 E;  1SQB E;  1RIE A;  1NU1 E;  4NBG D;  2YFI A;  2XSO A;  3GOB A;  3VMG D;  3VMI D;  1VCK A;  4NBB A;  4H13 D;  1BE3 E;  2DE7 D;  2I7F A;  2HML A;  3TGU E;  3VCA A;  4NBH A;  2NVF A;  3CXH E;  4NBF A;  3L73 E;  2DE6 A;  1Z02 A;  1BCC E;  2HMN A;  1Z03 A;  1FQT A;  1VM9 A;  3EN1 A;  2NUK A;  4NBB D;  2YFL A;  4OGQ D;  1SQX E;  3GL2 A;  2HMM A;  1PPJ E;  2XRX A;  2ZT9 D;  4AAY B;  4NBA A;  4NBH D;  3GZX A;  1P84 E;  2IBZ E;  2E4Q A;  1UUW A;  3VCP A;  2YVJ B;  4HM8 A;  1O7H A;  4P1C H;  2E74 D;  4NBC A;  1O7W A;  4NBD A;  2DE5 D;  3L70 E;  1PP9 E;  3GTE A;  2E76 D;  4H44 D;  4HM0 A;  2D2C D;  1Z01 A;  3GCE A;  4QUR A;  3AZC A;  5AEW A;  4AIV A;  3VMH A;  3GL0 A;  3DQY A;  3H1H E;  4H0L D;  5HL4 A;  4NB9 A;  2FYN C;  2YFJ A;  1Q90 C;  2BMR A;  2A06 E;  2GBW A;  2YIU C;  1ULJ A;  1L0L E;  4QDC A;  1O7P A;  2HMO A;  3H1I E;  4HM5 A;  2XSH A;  4PV1 D;  1EZV E;  1L0N E;  4EMJ B;  4HM1 A;  1JM1 A;  4QUP A;  4NBE A;  3N0Q A;  2QPZ A;  4U3F E;  2BMO A;  3L75 E;  4NBF D;  2E75 D;  1EG9 A;  2NUM A;  4NB8 A;  1NDO A;  2DE6 D;  2JZA A;  2HMK A;  3D89 A;  2E4P A;  3CWB E;  3GTS A;  2Q3W A;  2BMQ A;  1SQQ E;  2FYU E;  2B24 A;  2HMJ A;  4NBA D;  3GB4 A;  4HM2 A;  5KLV E;  3VMI A;  1WW9 A;  3GKQ A;  3H1K E;  3H1L E;  1G8J B;  2DE7 A;  5CXM A;  4NB8 D;  1NTZ E;  2NVE A;  4NBC D;  1NYK A;  4NBD D;  1ULI A;  5BOK A;  3GKE A;  1O7N A;  1WQL A;  2CKF A;  4QDF B;  1NTM E;  4QDD A;  2JO6 A;  3FOU A;  3VMH D;  1O7M A;  4HJL A;  3GCF A;  4NB9 D;  2QJK C;  3GZY A;  1SQV E;  1VF5 D;  5KKZ C;  1ZRT E;  4PD4 E;  5KLI C;  1G8K B;  4QCK A;  4QUQ A;  2ZYL A;  1KYO E;  1RFS A;  1UUV A;  2B1X A;  3L74 E;  2GBX A;  4NBG A;  2NWF A;  1SJG A;  2XR8 A;  4NBE D;  3VMG A;  4QDF A;  4HM6 A;  3EQQ A;  4HKV A;  2DE5 A;  4HM4 A;  2BCC E;  3L72 E;  2QJP C;  2QJY C;  3C0D A;  1O7G A;  1KB9 E;  4HM7 A;  1SQP E;  5AEU A;  4P1B H;  3BCC E;  3H1J E;  3CX5 E;  1NTK E;  4HM3 A;  2NVG A; 
#chains in the Genus database with same CATH topology
 3L71 E;  1SQB E;  1RIE A;  1NU1 E;  4NBG D;  2YFI A;  2XSO A;  3GOB A;  3VMG D;  3VMI D;  1VCK A;  4NBB A;  4H13 D;  1BE3 E;  2DE7 D;  2I7F A;  2HML A;  3TGU E;  3VCA A;  4NBH A;  2NVF A;  3CXH E;  4NBF A;  3L73 E;  2DE6 A;  1Z02 A;  1BCC E;  2HMN A;  1Z03 A;  1FQT A;  1VM9 A;  3EN1 A;  2NUK A;  4NBB D;  2YFL A;  4OGQ D;  1SQX E;  3GL2 A;  2HMM A;  1PPJ E;  2XRX A;  2ZT9 D;  4AAY B;  4NBA A;  4NBH D;  3GZX A;  1P84 E;  2IBZ E;  2E4Q A;  1UUW A;  3VCP A;  2YVJ B;  4HM8 A;  1O7H A;  4P1C H;  2E74 D;  4NBC A;  1O7W A;  4NBD A;  2DE5 D;  3L70 E;  1PP9 E;  3GTE A;  2E76 D;  4H44 D;  4HM0 A;  2D2C D;  1Z01 A;  3GCE A;  4QUR A;  3AZC A;  5AEW A;  4AIV A;  3VMH A;  3GL0 A;  3DQY A;  3H1H E;  4H0L D;  5HL4 A;  4NB9 A;  2FYN C;  2YFJ A;  1Q90 C;  2BMR A;  2A06 E;  2GBW A;  2YIU C;  1ULJ A;  1L0L E;  4QDC A;  1O7P A;  2HMO A;  3H1I E;  4HM5 A;  2XSH A;  4PV1 D;  1EZV E;  1L0N E;  4EMJ B;  4HM1 A;  1JM1 A;  4QUP A;  4NBE A;  3N0Q A;  2QPZ A;  4U3F E;  2BMO A;  3L75 E;  4NBF D;  2E75 D;  1EG9 A;  2NUM A;  4NB8 A;  1NDO A;  2DE6 D;  2JZA A;  2HMK A;  3D89 A;  2E4P A;  3CWB E;  3GTS A;  2Q3W A;  2BMQ A;  1SQQ E;  2FYU E;  2B24 A;  2HMJ A;  4NBA D;  3GB4 A;  4HM2 A;  5KLV E;  3VMI A;  1WW9 A;  3GKQ A;  3H1K E;  3H1L E;  1G8J B;  2DE7 A;  5CXM A;  4NB8 D;  1NTZ E;  2NVE A;  4NBC D;  1NYK A;  4NBD D;  1ULI A;  5BOK A;  3GKE A;  1O7N A;  1WQL A;  2CKF A;  4QDF B;  1NTM E;  4QDD A;  2JO6 A;  3FOU A;  3VMH D;  1O7M A;  4HJL A;  3GCF A;  4NB9 D;  2QJK C;  3GZY A;  1SQV E;  1VF5 D;  5KKZ C;  1ZRT E;  4PD4 E;  5KLI C;  1G8K B;  4QCK A;  4QUQ A;  2ZYL A;  1KYO E;  1RFS A;  1UUV A;  2B1X A;  3L74 E;  2GBX A;  4NBG A;  2NWF A;  1SJG A;  2XR8 A;  4NBE D;  3VMG A;  4QDF A;  4HM6 A;  3EQQ A;  4HKV A;  2DE5 A;  4HM4 A;  2BCC E;  3L72 E;  2QJP C;  2QJY C;  3C0D A;  1O7G A;  1KB9 E;  4HM7 A;  1SQP E;  5AEU A;  4P1B H;  3BCC E;  3H1J E;  3CX5 E;  1NTK E;  4HM3 A;  2NVG A; 
#chains in the Genus database with same CATH homology
 3L71 E;  1SQB E;  1RIE A;  1NU1 E;  4NBG D;  2YFI A;  2XSO A;  3GOB A;  3VMG D;  3VMI D;  1VCK A;  4NBB A;  4H13 D;  1BE3 E;  2DE7 D;  2I7F A;  2HML A;  3TGU E;  3VCA A;  4NBH A;  2NVF A;  3CXH E;  4NBF A;  3L73 E;  2DE6 A;  1Z02 A;  1BCC E;  2HMN A;  1Z03 A;  1FQT A;  1VM9 A;  3EN1 A;  2NUK A;  4NBB D;  2YFL A;  4OGQ D;  1SQX E;  3GL2 A;  2HMM A;  1PPJ E;  2XRX A;  2ZT9 D;  4AAY B;  4NBA A;  4NBH D;  3GZX A;  1P84 E;  2IBZ E;  2E4Q A;  1UUW A;  3VCP A;  2YVJ B;  4HM8 A;  1O7H A;  4P1C H;  2E74 D;  4NBC A;  1O7W A;  4NBD A;  2DE5 D;  3L70 E;  1PP9 E;  3GTE A;  2E76 D;  4H44 D;  4HM0 A;  2D2C D;  1Z01 A;  3GCE A;  4QUR A;  3AZC A;  5AEW A;  4AIV A;  3VMH A;  3GL0 A;  3DQY A;  3H1H E;  4H0L D;  5HL4 A;  4NB9 A;  2FYN C;  2YFJ A;  1Q90 C;  2BMR A;  2A06 E;  2GBW A;  2YIU C;  1ULJ A;  1L0L E;  4QDC A;  1O7P A;  2HMO A;  3H1I E;  4HM5 A;  2XSH A;  4PV1 D;  1EZV E;  1L0N E;  4EMJ B;  4HM1 A;  1JM1 A;  4QUP A;  4NBE A;  3N0Q A;  2QPZ A;  4U3F E;  2BMO A;  3L75 E;  4NBF D;  2E75 D;  1EG9 A;  2NUM A;  4NB8 A;  1NDO A;  2DE6 D;  2JZA A;  2HMK A;  3D89 A;  2E4P A;  3CWB E;  3GTS A;  2Q3W A;  2BMQ A;  1SQQ E;  2FYU E;  2B24 A;  2HMJ A;  4NBA D;  3GB4 A;  4HM2 A;  5KLV E;  3VMI A;  1WW9 A;  3GKQ A;  3H1K E;  3H1L E;  1G8J B;  2DE7 A;  5CXM A;  4NB8 D;  1NTZ E;  2NVE A;  4NBC D;  1NYK A;  4NBD D;  1ULI A;  5BOK A;  3GKE A;  1O7N A;  1WQL A;  2CKF A;  4QDF B;  1NTM E;  4QDD A;  2JO6 A;  3FOU A;  3VMH D;  1O7M A;  4HJL A;  3GCF A;  4NB9 D;  2QJK C;  3GZY A;  1SQV E;  1VF5 D;  5KKZ C;  1ZRT E;  4PD4 E;  5KLI C;  1G8K B;  4QCK A;  4QUQ A;  2ZYL A;  1KYO E;  1RFS A;  1UUV A;  2B1X A;  3L74 E;  2GBX A;  4NBG A;  2NWF A;  1SJG A;  2XR8 A;  4NBE D;  3VMG A;  4QDF A;  4HM6 A;  3EQQ A;  4HKV A;  2DE5 A;  4HM4 A;  2BCC E;  3L72 E;  2QJP C;  2QJY C;  3C0D A;  1O7G A;  1KB9 E;  4HM7 A;  1SQP E;  5AEU A;  4P1B H;  3BCC E;  3H1J E;  3CX5 E;  1NTK E;  4HM3 A;  2NVG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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