2HMOA

Crystal structure of naphthalene 1,2-dioxygenase bound to 3-nitrotoluene.
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase.
pubmed doi rcsb
source organism Pseudomonas sp.
molecule tags Oxidoreductase
molecule keywords Naphthalene 1,2-dioxygenase alpha subunit
total genus 163
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2006-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2hmoA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2hmoA01
3L72E 4QCKA 2NUKA 2XSHA 1NTKE 2NVFA 3L71E 1O7PA 1ULJA 2YIUC 3GOBA 2CKFA 1SQQE 3C0DA 4NBDA 1RIEA 4PD4E 3VMID 2JO6A 4NBHD 3DQYA 2ZT9D 2DE6D 4P1BH 3GTSA 4HM2A 2DE5D 2HMOA 2QJPC 2I7FA 3H1IE 4NBDD 4QDFA 4HJLA 5KLIC 4NBFD 3VCAA 1VF5D 2E4QA 2DE7D 2XRXA 1KYOE 2ZYLA 1SQVE 2BMQA 1Q90C 3GZYA 1SQPE 2NVGA 5CXMA 4HKVA 2BCCE 5KLVE 2E76D 4NBHA 1L0LE 5BOKA 4HM8A 4NBBA 3L73E 1BE3E 2DE6A 1SQXE 3L70E 3CWBE 4H0LD 4QUQA 1L0NE 4NBGD 1BCCE 1ZRTE 3H1HE 4NB9A 4HM4A 4NBEA 2YFJA 3GKQA 3L74E 4OGQD 2NVEA 3H1LE 3AZCA 4HM6A 2E4PA 2YVJB 4AIVA 2HMJA 4QDDA 1Z01A 2FYNC 1PPJE 2A06E 4NBAA 2HMNA 1ULIA 1O7WA 2QPZA 4NBFA 1FQTA 3GTEA 2E75D 2QJKC 5AEUA 2HMMA 3N0QA 3H1KE 1O7HA 3GL0A 5AEWA 1PP9E 4NBCA 2XSOA 4NB9D 4HM3A 4NBED 1WW9A 3VMGA 2DE5A 1NTZE 1O7GA 2GBXA 2HMLA 3BCCE 3GL2A 3L75E 2B1XA 2JZAA 2YFIA 4AAYB 3VMIA 1JM1A 1WQLA 4H44D 3VMGD 2NUMA 1P84E 1NTME 2BMRA 3VCPA 2FYUE 1UUWA 1EG9A 1NYKA 3TGUE 2E74D 2BMOA 1VCKA 3EQQA 1G8JB 4NB8D 3CXHE 4U3FE 2QJYC 2Q3WA 1KB9E 4NBAD 3VMHD 1EZVE 2XR8A 4HM1A 1Z02A 5HL4A 4NBGA 2GBWA 1RFSA 1O7NA 4HM0A 3CX5E 4QDCA 2YFLA 3GZXA 1SQBE 4H13D 4NBBD 3GB4A 2B24A 4QDFB 1NDOA 4NBCD 4HM5A 4PV1D 1UUVA 2IBZE 3GCEA 4EMJB 5KKZC 3EN1A 3VMHA 4QUPA 3H1JE 1G8KB 3GKEA 4HM7A 4NB8A 1NU1E 2DE7A 2D2CD 3GCFA 1Z03A 1O7MA 1VM9A 3D89A 4QURA 2HMKA 1SJGA 2NWFA 3FOUA 4P1CH
chains in the Genus database with same CATH superfamily
3L72E 4QCKA 2NUKA 2XSHA 1NTKE 2NVFA 3L71E 1O7PA 1ULJA 2YIUC 3GOBA 2CKFA 1SQQE 3C0DA 4NBDA 1RIEA 4PD4E 3VMID 2JO6A 4NBHD 3DQYA 2ZT9D 2DE6D 4P1BH 3GTSA 4HM2A 2DE5D 2HMOA 2QJPC 2I7FA 3H1IE 4NBDD 4QDFA 4HJLA 5KLIC 4NBFD 3VCAA 1VF5D 2E4QA 2DE7D 2XRXA 1KYOE 2ZYLA 1SQVE 2BMQA 1Q90C 3GZYA 1SQPE 2NVGA 5CXMA 4HKVA 2BCCE 5KLVE 2E76D 4NBHA 1L0LE 5BOKA 4HM8A 4NBBA 3L73E 1BE3E 2DE6A 1SQXE 3L70E 3CWBE 4H0LD 4QUQA 1L0NE 4NBGD 1BCCE 1ZRTE 3H1HE 4NB9A 4HM4A 4NBEA 2YFJA 3GKQA 3L74E 4OGQD 2NVEA 3H1LE 3AZCA 4HM6A 2E4PA 2YVJB 4AIVA 2HMJA 4QDDA 1Z01A 2FYNC 1PPJE 2A06E 4NBAA 2HMNA 1ULIA 1O7WA 2QPZA 4NBFA 1FQTA 3GTEA 2E75D 2QJKC 5AEUA 2HMMA 3N0QA 3H1KE 1O7HA 3GL0A 5AEWA 1PP9E 4NBCA 2XSOA 4NB9D 4HM3A 4NBED 1WW9A 3VMGA 2DE5A 1NTZE 1O7GA 2GBXA 2HMLA 3BCCE 3GL2A 3L75E 2B1XA 2JZAA 2YFIA 4AAYB 3VMIA 1JM1A 1WQLA 4H44D 3VMGD 2NUMA 1P84E 1NTME 2BMRA 3VCPA 2FYUE 1UUWA 1EG9A 1NYKA 3TGUE 2E74D 2BMOA 1VCKA 3EQQA 1G8JB 4NB8D 3CXHE 4U3FE 2QJYC 2Q3WA 1KB9E 4NBAD 3VMHD 1EZVE 2XR8A 4HM1A 1Z02A 5HL4A 4NBGA 2GBWA 1RFSA 1O7NA 4HM0A 3CX5E 4QDCA 2YFLA 3GZXA 1SQBE 4H13D 4NBBD 3GB4A 2B24A 4QDFB 1NDOA 4NBCD 4HM5A 4PV1D 1UUVA 2IBZE 3GCEA 4EMJB 5KKZC 3EN1A 3VMHA 4QUPA 3H1JE 1G8KB 3GKEA 4HM7A 4NB8A 1NU1E 2DE7A 2D2CD 3GCFA 1Z03A 1O7MA 1VM9A 3D89A 4QURA 2HMKA 1SJGA 2NWFA 3FOUA 4P1CH
chains in the Genus database with same CATH topology
3L72E 4QCKA 2NUKA 2XSHA 1NTKE 2NVFA 3L71E 1O7PA 1ULJA 2YIUC 3GOBA 2CKFA 1SQQE 3C0DA 4NBDA 1RIEA 4PD4E 3VMID 2JO6A 4NBHD 3DQYA 2ZT9D 2DE6D 4P1BH 3GTSA 4HM2A 2DE5D 2HMOA 2QJPC 2I7FA 3H1IE 4NBDD 4QDFA 4HJLA 5KLIC 4NBFD 3VCAA 1VF5D 2E4QA 2DE7D 2XRXA 1KYOE 2ZYLA 1SQVE 2BMQA 1Q90C 3GZYA 1SQPE 2NVGA 5CXMA 4HKVA 2BCCE 5KLVE 2E76D 4NBHA 1L0LE 5BOKA 4HM8A 4NBBA 3L73E 1BE3E 2DE6A 1SQXE 3L70E 3CWBE 4H0LD 4QUQA 1L0NE 4NBGD 1BCCE 1ZRTE 3H1HE 4NB9A 4HM4A 4NBEA 2YFJA 3GKQA 3L74E 4OGQD 2NVEA 3H1LE 3AZCA 4HM6A 2E4PA 2YVJB 4AIVA 2HMJA 4QDDA 1Z01A 2FYNC 1PPJE 2A06E 4NBAA 2HMNA 1ULIA 1O7WA 2QPZA 4NBFA 1FQTA 3GTEA 2E75D 2QJKC 5AEUA 2HMMA 3N0QA 3H1KE 1O7HA 3GL0A 5AEWA 1PP9E 4NBCA 2XSOA 4NB9D 4HM3A 4NBED 1WW9A 3VMGA 2DE5A 1NTZE 1O7GA 2GBXA 2HMLA 3BCCE 3GL2A 3L75E 2B1XA 2JZAA 2YFIA 4AAYB 3VMIA 1JM1A 1WQLA 4H44D 3VMGD 2NUMA 1P84E 1NTME 2BMRA 3VCPA 2FYUE 1UUWA 1EG9A 1NYKA 3TGUE 2E74D 2BMOA 1VCKA 3EQQA 1G8JB 4NB8D 3CXHE 4U3FE 2QJYC 2Q3WA 1KB9E 4NBAD 3VMHD 1EZVE 2XR8A 4HM1A 1Z02A 5HL4A 4NBGA 2GBWA 1RFSA 1O7NA 4HM0A 3CX5E 4QDCA 2YFLA 3GZXA 1SQBE 4H13D 4NBBD 3GB4A 2B24A 4QDFB 1NDOA 4NBCD 4HM5A 4PV1D 1UUVA 2IBZE 3GCEA 4EMJB 5KKZC 3EN1A 3VMHA 4QUPA 3H1JE 1G8KB 3GKEA 4HM7A 4NB8A 1NU1E 2DE7A 2D2CD 3GCFA 1Z03A 1O7MA 1VM9A 3D89A 4QURA 2HMKA 1SJGA 2NWFA 3FOUA 4P1CH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L72 E;  4QCK A;  2NUK A;  2XSH A;  1NTK E;  2NVF A;  3L71 E;  1O7P A;  1ULJ A;  2YIU C;  3GOB A;  2CKF A;  1SQQ E;  3C0D A;  4NBD A;  1RIE A;  4PD4 E;  3VMI D;  2JO6 A;  4NBH D;  3DQY A;  2ZT9 D;  2DE6 D;  4P1B H;  3GTS A;  4HM2 A;  2DE5 D;  2HMO A;  2QJP C;  2I7F A;  3H1I E;  4NBD D;  4QDF A;  4HJL A;  5KLI C;  4NBF D;  3VCA A;  1VF5 D;  2E4Q A;  2DE7 D;  2XRX A;  1KYO E;  2ZYL A;  1SQV E;  2BMQ A;  1Q90 C;  3GZY A;  1SQP E;  2NVG A;  5CXM A;  4HKV A;  2BCC E;  5KLV E;  2E76 D;  4NBH A;  1L0L E;  5BOK A;  4HM8 A;  4NBB A;  3L73 E;  1BE3 E;  2DE6 A;  1SQX E;  3L70 E;  3CWB E;  4H0L D;  4QUQ A;  1L0N E;  4NBG D;  1BCC E;  1ZRT E;  3H1H E;  4NB9 A;  4HM4 A;  4NBE A;  2YFJ A;  3GKQ A;  3L74 E;  4OGQ D;  2NVE A;  3H1L E;  3AZC A;  4HM6 A;  2E4P A;  2YVJ B;  4AIV A;  2HMJ A;  4QDD A;  1Z01 A;  2FYN C;  1PPJ E;  2A06 E;  4NBA A;  2HMN A;  1ULI A;  1O7W A;  2QPZ A;  4NBF A;  1FQT A;  3GTE A;  2E75 D;  2QJK C;  5AEU A;  2HMM A;  3N0Q A;  3H1K E;  1O7H A;  3GL0 A;  5AEW A;  1PP9 E;  4NBC A;  2XSO A;  4NB9 D;  4HM3 A;  4NBE D;  1WW9 A;  3VMG A;  2DE5 A;  1NTZ E;  1O7G A;  2GBX A;  2HML A;  3BCC E;  3GL2 A;  3L75 E;  2B1X A;  2JZA A;  2YFI A;  4AAY B;  3VMI A;  1JM1 A;  1WQL A;  4H44 D;  3VMG D;  2NUM A;  1P84 E;  1NTM E;  2BMR A;  3VCP A;  2FYU E;  1UUW A;  1EG9 A;  1NYK A;  3TGU E;  2E74 D;  2BMO A;  1VCK A;  3EQQ A;  1G8J B;  4NB8 D;  3CXH E;  4U3F E;  2QJY C;  2Q3W A;  1KB9 E;  4NBA D;  3VMH D;  1EZV E;  2XR8 A;  4HM1 A;  1Z02 A;  5HL4 A;  4NBG A;  2GBW A;  1RFS A;  1O7N A;  4HM0 A;  3CX5 E;  4QDC A;  2YFL A;  3GZX A;  1SQB E;  4H13 D;  4NBB D;  3GB4 A;  2B24 A;  4QDF B;  1NDO A;  4NBC D;  4HM5 A;  4PV1 D;  1UUV A;  2IBZ E;  3GCE A;  4EMJ B;  5KKZ C;  3EN1 A;  3VMH A;  4QUP A;  3H1J E;  1G8K B;  3GKE A;  4HM7 A;  4NB8 A;  1NU1 E;  2DE7 A;  2D2C D;  3GCF A;  1Z03 A;  1O7M A;  1VM9 A;  3D89 A;  4QUR A;  2HMK A;  1SJG A;  2NWF A;  3FOU A;  4P1C H; 
#chains in the Genus database with same CATH topology
 3L72 E;  4QCK A;  2NUK A;  2XSH A;  1NTK E;  2NVF A;  3L71 E;  1O7P A;  1ULJ A;  2YIU C;  3GOB A;  2CKF A;  1SQQ E;  3C0D A;  4NBD A;  1RIE A;  4PD4 E;  3VMI D;  2JO6 A;  4NBH D;  3DQY A;  2ZT9 D;  2DE6 D;  4P1B H;  3GTS A;  4HM2 A;  2DE5 D;  2HMO A;  2QJP C;  2I7F A;  3H1I E;  4NBD D;  4QDF A;  4HJL A;  5KLI C;  4NBF D;  3VCA A;  1VF5 D;  2E4Q A;  2DE7 D;  2XRX A;  1KYO E;  2ZYL A;  1SQV E;  2BMQ A;  1Q90 C;  3GZY A;  1SQP E;  2NVG A;  5CXM A;  4HKV A;  2BCC E;  5KLV E;  2E76 D;  4NBH A;  1L0L E;  5BOK A;  4HM8 A;  4NBB A;  3L73 E;  1BE3 E;  2DE6 A;  1SQX E;  3L70 E;  3CWB E;  4H0L D;  4QUQ A;  1L0N E;  4NBG D;  1BCC E;  1ZRT E;  3H1H E;  4NB9 A;  4HM4 A;  4NBE A;  2YFJ A;  3GKQ A;  3L74 E;  4OGQ D;  2NVE A;  3H1L E;  3AZC A;  4HM6 A;  2E4P A;  2YVJ B;  4AIV A;  2HMJ A;  4QDD A;  1Z01 A;  2FYN C;  1PPJ E;  2A06 E;  4NBA A;  2HMN A;  1ULI A;  1O7W A;  2QPZ A;  4NBF A;  1FQT A;  3GTE A;  2E75 D;  2QJK C;  5AEU A;  2HMM A;  3N0Q A;  3H1K E;  1O7H A;  3GL0 A;  5AEW A;  1PP9 E;  4NBC A;  2XSO A;  4NB9 D;  4HM3 A;  4NBE D;  1WW9 A;  3VMG A;  2DE5 A;  1NTZ E;  1O7G A;  2GBX A;  2HML A;  3BCC E;  3GL2 A;  3L75 E;  2B1X A;  2JZA A;  2YFI A;  4AAY B;  3VMI A;  1JM1 A;  1WQL A;  4H44 D;  3VMG D;  2NUM A;  1P84 E;  1NTM E;  2BMR A;  3VCP A;  2FYU E;  1UUW A;  1EG9 A;  1NYK A;  3TGU E;  2E74 D;  2BMO A;  1VCK A;  3EQQ A;  1G8J B;  4NB8 D;  3CXH E;  4U3F E;  2QJY C;  2Q3W A;  1KB9 E;  4NBA D;  3VMH D;  1EZV E;  2XR8 A;  4HM1 A;  1Z02 A;  5HL4 A;  4NBG A;  2GBW A;  1RFS A;  1O7N A;  4HM0 A;  3CX5 E;  4QDC A;  2YFL A;  3GZX A;  1SQB E;  4H13 D;  4NBB D;  3GB4 A;  2B24 A;  4QDF B;  1NDO A;  4NBC D;  4HM5 A;  4PV1 D;  1UUV A;  2IBZ E;  3GCE A;  4EMJ B;  5KKZ C;  3EN1 A;  3VMH A;  4QUP A;  3H1J E;  1G8K B;  3GKE A;  4HM7 A;  4NB8 A;  1NU1 E;  2DE7 A;  2D2C D;  3GCF A;  1Z03 A;  1O7M A;  1VM9 A;  3D89 A;  4QUR A;  2HMK A;  1SJG A;  2NWF A;  3FOU A;  4P1C H; 
#chains in the Genus database with same CATH homology
 3L72 E;  4QCK A;  2NUK A;  2XSH A;  1NTK E;  2NVF A;  3L71 E;  1O7P A;  1ULJ A;  2YIU C;  3GOB A;  2CKF A;  1SQQ E;  3C0D A;  4NBD A;  1RIE A;  4PD4 E;  3VMI D;  2JO6 A;  4NBH D;  3DQY A;  2ZT9 D;  2DE6 D;  4P1B H;  3GTS A;  4HM2 A;  2DE5 D;  2HMO A;  2QJP C;  2I7F A;  3H1I E;  4NBD D;  4QDF A;  4HJL A;  5KLI C;  4NBF D;  3VCA A;  1VF5 D;  2E4Q A;  2DE7 D;  2XRX A;  1KYO E;  2ZYL A;  1SQV E;  2BMQ A;  1Q90 C;  3GZY A;  1SQP E;  2NVG A;  5CXM A;  4HKV A;  2BCC E;  5KLV E;  2E76 D;  4NBH A;  1L0L E;  5BOK A;  4HM8 A;  4NBB A;  3L73 E;  1BE3 E;  2DE6 A;  1SQX E;  3L70 E;  3CWB E;  4H0L D;  4QUQ A;  1L0N E;  4NBG D;  1BCC E;  1ZRT E;  3H1H E;  4NB9 A;  4HM4 A;  4NBE A;  2YFJ A;  3GKQ A;  3L74 E;  4OGQ D;  2NVE A;  3H1L E;  3AZC A;  4HM6 A;  2E4P A;  2YVJ B;  4AIV A;  2HMJ A;  4QDD A;  1Z01 A;  2FYN C;  1PPJ E;  2A06 E;  4NBA A;  2HMN A;  1ULI A;  1O7W A;  2QPZ A;  4NBF A;  1FQT A;  3GTE A;  2E75 D;  2QJK C;  5AEU A;  2HMM A;  3N0Q A;  3H1K E;  1O7H A;  3GL0 A;  5AEW A;  1PP9 E;  4NBC A;  2XSO A;  4NB9 D;  4HM3 A;  4NBE D;  1WW9 A;  3VMG A;  2DE5 A;  1NTZ E;  1O7G A;  2GBX A;  2HML A;  3BCC E;  3GL2 A;  3L75 E;  2B1X A;  2JZA A;  2YFI A;  4AAY B;  3VMI A;  1JM1 A;  1WQL A;  4H44 D;  3VMG D;  2NUM A;  1P84 E;  1NTM E;  2BMR A;  3VCP A;  2FYU E;  1UUW A;  1EG9 A;  1NYK A;  3TGU E;  2E74 D;  2BMO A;  1VCK A;  3EQQ A;  1G8J B;  4NB8 D;  3CXH E;  4U3F E;  2QJY C;  2Q3W A;  1KB9 E;  4NBA D;  3VMH D;  1EZV E;  2XR8 A;  4HM1 A;  1Z02 A;  5HL4 A;  4NBG A;  2GBW A;  1RFS A;  1O7N A;  4HM0 A;  3CX5 E;  4QDC A;  2YFL A;  3GZX A;  1SQB E;  4H13 D;  4NBB D;  3GB4 A;  2B24 A;  4QDF B;  1NDO A;  4NBC D;  4HM5 A;  4PV1 D;  1UUV A;  2IBZ E;  3GCE A;  4EMJ B;  5KKZ C;  3EN1 A;  3VMH A;  4QUP A;  3H1J E;  1G8K B;  3GKE A;  4HM7 A;  4NB8 A;  1NU1 E;  2DE7 A;  2D2C D;  3GCF A;  1Z03 A;  1O7M A;  1VM9 A;  3D89 A;  4QUR A;  2HMK A;  1SJG A;  2NWF A;  3FOU A;  4P1C H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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