3N0QA

Crystal structure of a putative aromatic-ring hydroxylating dioxygenase (tm1040_3219) from silicibacter sp. tm1040 at 1.80 a resolution
Total Genus 131
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
131
sequence length
402
structure length
402
Chain Sequence
MHSNINTLIANHRAGHALDQAFYTDAEVFQTDLQEIFYKEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIRAFHNACRHRGSVICKAKKGNNPKLVCPYHQWTYELDGRLLWARDMGPDFEPSRHGLKTVHCRELAGLIYICLADEAPDFERFAEVARPYLEVHDLSNAKVAHESSIVERGNWKLVWENNRECYHCGGNHPALCRTFPDDPSVTGIEGGETPSNLQAHFDRCEQAGMPSGFHLSGDGQFRVARMPLKEGAESYTMDGKTAVRRWLGRAAFADAGSLLKFHYPTTWNHFLSDHSIVFRVTPISPTETEVTTKWLVHKDAVEGVDYDLQRLTEVWIATNDEDREVVEFNQMGINSPAYEPGPYSPTQESGVLQFVEWYLSTLKRNSGP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
source organism Ruegeria sp. tm1040
publication title Crystal structure of a Putative aromatic-ring hydroxylating dioxygenase (TM1040_3219) from SILICIBACTER SP. TM1040 at 1.80 A resolution
rcsb
molecule keywords Putative aromatic-ring hydroxylating dioxygenase
total genus 131
structure length 402
sequence length 402
ec nomenclature
pdb deposition date 2010-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3n0qA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 3n0qA01
2BMOA 4QUQA 2DE6D 1Z01A 3N0QA 1O7GA 4NBBA 3VMHD 4NBED 4P1CH 2BMRA 3H1IE 4AIVA 3L74E 2YFJA 4NB9A 1KYOE 2DE5D 4HJLA 2GBXA 2HMMA 1UUWA 1KB9E 3GOBA 2YFLA 4PV1D 4NB8A 2FYNC 1RFSA 1SQBE 3VCPA 3GKEA 2HMNA 4HM0A 4QCKA 2YVJB 2E4QA 4NBCD 3GB4A 2HMOA 1G8JB 3L70E 4EMJB 1EZVE 2NWFA 2DE7D 2FYUE 4QDCA 1RIEA 1WW9A 1EG9A 3GTSA 3CWBE 1Z02A 1O7WA 2XSOA 4NBGD 4HM2A 3VCAA 4NBFA 2YIUC 1G8KB 2HMLA 5KKZC 3GKQA 1NYKA 2D2CD 2XSHA 1O7MA 2E76D 3D89A 3DQYA 4H0LD 1SQPE 3EN1A 1FQTA 1PPJE 1ULJA 2JZAA 4QDDA 4HM4A 4HM3A 2DE6A 4OGQD 2QPZA 4NBEA 3VMHA 2CKFA 2A06E 1ZRTE 4QUPA 3VMID 1BCCE 1NTKE 3GL2A 4NBAD 2DE5A 5HL4A 3L72E 3GZXA 3L75E 1UUVA 2NVFA 4NBCA 5KLIC 3GZYA 2HMJA 3GCFA 4HM5A 3CX5E 2NUKA 3L73E 4HKVA 3VMGD 3BCCE 4NBAA 3H1JE 2DE7A 1L0LE 2JO6A 1NTZE 2ZYLA 1P84E 4NBDD 4AAYB 2ZT9D 2QJPC 4U3FE 1NTME 4NBGA 2E74D 1PP9E 2QJYC 1JM1A 1SQQE 2XR8A 4NBHD 5KLVE 3H1HE 3EQQA 2NVEA 4NBBD 4QDFA 2E4PA 2GBWA 5BOKA 3C0DA 1L0NE 4P1BH 3GL0A 4NB9D 1O7PA 1WQLA 2BMQA 3L71E 2E75D 2I7FA 4HM7A 4NB8D 2NUMA 3AZCA 3GCEA 1O7NA 3VMIA 1SJGA 4QURA 2QJKC 3CXHE 1O7HA 1NDOA 2Q3WA 4HM1A 2IBZE 2B1XA 3FOUA 2B24A 4QDFB 3H1LE 3H1KE 1SQVE 2NVGA 2YFIA 5AEUA 5CXMA 1Q90C 4PD4E 4H13D 3TGUE 4NBFD 1BE3E 3VMGA 1NU1E 1ULIA 2XRXA 1VM9A 3GTEA 4NBDA 1Z03A 5AEWA 2BCCE 2HMKA 4HM8A 4HM6A 1VCKA 4H44D 4NBHA 1SQXE 1VF5D
chains in the Genus database with same CATH superfamily
2BMOA 4QUQA 2DE6D 1Z01A 3N0QA 1O7GA 4NBBA 3VMHD 4NBED 4P1CH 2BMRA 3H1IE 4AIVA 3L74E 2YFJA 4NB9A 1KYOE 2DE5D 4HJLA 2GBXA 2HMMA 1UUWA 1KB9E 3GOBA 2YFLA 4PV1D 4NB8A 2FYNC 1RFSA 1SQBE 3VCPA 3GKEA 2HMNA 4HM0A 4QCKA 2YVJB 2E4QA 4NBCD 3GB4A 2HMOA 1G8JB 3L70E 4EMJB 1EZVE 2NWFA 2DE7D 2FYUE 4QDCA 1RIEA 1WW9A 1EG9A 3GTSA 3CWBE 1Z02A 1O7WA 2XSOA 4NBGD 4HM2A 3VCAA 4NBFA 2YIUC 1G8KB 2HMLA 5KKZC 3GKQA 1NYKA 2D2CD 2XSHA 1O7MA 2E76D 3D89A 3DQYA 4H0LD 1SQPE 3EN1A 1FQTA 1PPJE 1ULJA 2JZAA 4QDDA 4HM4A 4HM3A 2DE6A 4OGQD 2QPZA 4NBEA 3VMHA 2CKFA 2A06E 1ZRTE 4QUPA 3VMID 1BCCE 1NTKE 3GL2A 4NBAD 2DE5A 5HL4A 3L72E 3GZXA 3L75E 1UUVA 2NVFA 4NBCA 5KLIC 3GZYA 2HMJA 3GCFA 4HM5A 3CX5E 2NUKA 3L73E 4HKVA 3VMGD 3BCCE 4NBAA 3H1JE 2DE7A 1L0LE 2JO6A 1NTZE 2ZYLA 1P84E 4NBDD 4AAYB 2ZT9D 2QJPC 4U3FE 1NTME 4NBGA 2E74D 1PP9E 2QJYC 1JM1A 1SQQE 2XR8A 4NBHD 5KLVE 3H1HE 3EQQA 2NVEA 4NBBD 4QDFA 2E4PA 2GBWA 5BOKA 3C0DA 1L0NE 4P1BH 3GL0A 4NB9D 1O7PA 1WQLA 2BMQA 3L71E 2E75D 2I7FA 4HM7A 4NB8D 2NUMA 3AZCA 3GCEA 1O7NA 3VMIA 1SJGA 4QURA 2QJKC 3CXHE 1O7HA 1NDOA 2Q3WA 4HM1A 2IBZE 2B1XA 3FOUA 2B24A 4QDFB 3H1LE 3H1KE 1SQVE 2NVGA 2YFIA 5AEUA 5CXMA 1Q90C 4PD4E 4H13D 3TGUE 4NBFD 1BE3E 3VMGA 1NU1E 1ULIA 2XRXA 1VM9A 3GTEA 4NBDA 1Z03A 5AEWA 2BCCE 2HMKA 4HM8A 4HM6A 1VCKA 4H44D 4NBHA 1SQXE 1VF5D
chains in the Genus database with same CATH topology
2BMOA 4QUQA 2DE6D 1Z01A 3N0QA 1O7GA 4NBBA 3VMHD 4NBED 4P1CH 2BMRA 3H1IE 4AIVA 3L74E 2YFJA 4NB9A 1KYOE 2DE5D 4HJLA 2GBXA 2HMMA 1UUWA 1KB9E 3GOBA 2YFLA 4PV1D 4NB8A 2FYNC 1RFSA 1SQBE 3VCPA 3GKEA 2HMNA 4HM0A 4QCKA 2YVJB 2E4QA 4NBCD 3GB4A 2HMOA 1G8JB 3L70E 4EMJB 1EZVE 2NWFA 2DE7D 2FYUE 4QDCA 1RIEA 1WW9A 1EG9A 3GTSA 3CWBE 1Z02A 1O7WA 2XSOA 4NBGD 4HM2A 3VCAA 4NBFA 2YIUC 1G8KB 2HMLA 5KKZC 3GKQA 1NYKA 2D2CD 2XSHA 1O7MA 2E76D 3D89A 3DQYA 4H0LD 1SQPE 3EN1A 1FQTA 1PPJE 1ULJA 2JZAA 4QDDA 4HM4A 4HM3A 2DE6A 4OGQD 2QPZA 4NBEA 3VMHA 2CKFA 2A06E 1ZRTE 4QUPA 3VMID 1BCCE 1NTKE 3GL2A 4NBAD 2DE5A 5HL4A 3L72E 3GZXA 3L75E 1UUVA 2NVFA 4NBCA 5KLIC 3GZYA 2HMJA 3GCFA 4HM5A 3CX5E 2NUKA 3L73E 4HKVA 3VMGD 3BCCE 4NBAA 3H1JE 2DE7A 1L0LE 2JO6A 1NTZE 2ZYLA 1P84E 4NBDD 4AAYB 2ZT9D 2QJPC 4U3FE 1NTME 4NBGA 2E74D 1PP9E 2QJYC 1JM1A 1SQQE 2XR8A 4NBHD 5KLVE 3H1HE 3EQQA 2NVEA 4NBBD 4QDFA 2E4PA 2GBWA 5BOKA 3C0DA 1L0NE 4P1BH 3GL0A 4NB9D 1O7PA 1WQLA 2BMQA 3L71E 2E75D 2I7FA 4HM7A 4NB8D 2NUMA 3AZCA 3GCEA 1O7NA 3VMIA 1SJGA 4QURA 2QJKC 3CXHE 1O7HA 1NDOA 2Q3WA 4HM1A 2IBZE 2B1XA 3FOUA 2B24A 4QDFB 3H1LE 3H1KE 1SQVE 2NVGA 2YFIA 5AEUA 5CXMA 1Q90C 4PD4E 4H13D 3TGUE 4NBFD 1BE3E 3VMGA 1NU1E 1ULIA 2XRXA 1VM9A 3GTEA 4NBDA 1Z03A 5AEWA 2BCCE 2HMKA 4HM8A 4HM6A 1VCKA 4H44D 4NBHA 1SQXE 1VF5D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BMO A;  4QUQ A;  2DE6 D;  1Z01 A;  3N0Q A;  1O7G A;  4NBB A;  3VMH D;  4NBE D;  4P1C H;  2BMR A;  3H1I E;  4AIV A;  3L74 E;  2YFJ A;  4NB9 A;  1KYO E;  2DE5 D;  4HJL A;  2GBX A;  2HMM A;  1UUW A;  1KB9 E;  3GOB A;  2YFL A;  4PV1 D;  4NB8 A;  2FYN C;  1RFS A;  1SQB E;  3VCP A;  3GKE A;  2HMN A;  4HM0 A;  4QCK A;  2YVJ B;  2E4Q A;  4NBC D;  3GB4 A;  2HMO A;  1G8J B;  3L70 E;  4EMJ B;  1EZV E;  2NWF A;  2DE7 D;  2FYU E;  4QDC A;  1RIE A;  1WW9 A;  1EG9 A;  3GTS A;  3CWB E;  1Z02 A;  1O7W A;  2XSO A;  4NBG D;  4HM2 A;  3VCA A;  4NBF A;  2YIU C;  1G8K B;  2HML A;  5KKZ C;  3GKQ A;  1NYK A;  2D2C D;  2XSH A;  1O7M A;  2E76 D;  3D89 A;  3DQY A;  4H0L D;  1SQP E;  3EN1 A;  1FQT A;  1PPJ E;  1ULJ A;  2JZA A;  4QDD A;  4HM4 A;  4HM3 A;  2DE6 A;  4OGQ D;  2QPZ A;  4NBE A;  3VMH A;  2CKF A;  2A06 E;  1ZRT E;  4QUP A;  3VMI D;  1BCC E;  1NTK E;  3GL2 A;  4NBA D;  2DE5 A;  5HL4 A;  3L72 E;  3GZX A;  3L75 E;  1UUV A;  2NVF A;  4NBC A;  5KLI C;  3GZY A;  2HMJ A;  3GCF A;  4HM5 A;  3CX5 E;  2NUK A;  3L73 E;  4HKV A;  3VMG D;  3BCC E;  4NBA A;  3H1J E;  2DE7 A;  1L0L E;  2JO6 A;  1NTZ E;  2ZYL A;  1P84 E;  4NBD D;  4AAY B;  2ZT9 D;  2QJP C;  4U3F E;  1NTM E;  4NBG A;  2E74 D;  1PP9 E;  2QJY C;  1JM1 A;  1SQQ E;  2XR8 A;  4NBH D;  5KLV E;  3H1H E;  3EQQ A;  2NVE A;  4NBB D;  4QDF A;  2E4P A;  2GBW A;  5BOK A;  3C0D A;  1L0N E;  4P1B H;  3GL0 A;  4NB9 D;  1O7P A;  1WQL A;  2BMQ A;  3L71 E;  2E75 D;  2I7F A;  4HM7 A;  4NB8 D;  2NUM A;  3AZC A;  3GCE A;  1O7N A;  3VMI A;  1SJG A;  4QUR A;  2QJK C;  3CXH E;  1O7H A;  1NDO A;  2Q3W A;  4HM1 A;  2IBZ E;  2B1X A;  3FOU A;  2B24 A;  4QDF B;  3H1L E;  3H1K E;  1SQV E;  2NVG A;  2YFI A;  5AEU A;  5CXM A;  1Q90 C;  4PD4 E;  4H13 D;  3TGU E;  4NBF D;  1BE3 E;  3VMG A;  1NU1 E;  1ULI A;  2XRX A;  1VM9 A;  3GTE A;  4NBD A;  1Z03 A;  5AEW A;  2BCC E;  2HMK A;  4HM8 A;  4HM6 A;  1VCK A;  4H44 D;  4NBH A;  1SQX E;  1VF5 D; 
#chains in the Genus database with same CATH topology
 2BMO A;  4QUQ A;  2DE6 D;  1Z01 A;  3N0Q A;  1O7G A;  4NBB A;  3VMH D;  4NBE D;  4P1C H;  2BMR A;  3H1I E;  4AIV A;  3L74 E;  2YFJ A;  4NB9 A;  1KYO E;  2DE5 D;  4HJL A;  2GBX A;  2HMM A;  1UUW A;  1KB9 E;  3GOB A;  2YFL A;  4PV1 D;  4NB8 A;  2FYN C;  1RFS A;  1SQB E;  3VCP A;  3GKE A;  2HMN A;  4HM0 A;  4QCK A;  2YVJ B;  2E4Q A;  4NBC D;  3GB4 A;  2HMO A;  1G8J B;  3L70 E;  4EMJ B;  1EZV E;  2NWF A;  2DE7 D;  2FYU E;  4QDC A;  1RIE A;  1WW9 A;  1EG9 A;  3GTS A;  3CWB E;  1Z02 A;  1O7W A;  2XSO A;  4NBG D;  4HM2 A;  3VCA A;  4NBF A;  2YIU C;  1G8K B;  2HML A;  5KKZ C;  3GKQ A;  1NYK A;  2D2C D;  2XSH A;  1O7M A;  2E76 D;  3D89 A;  3DQY A;  4H0L D;  1SQP E;  3EN1 A;  1FQT A;  1PPJ E;  1ULJ A;  2JZA A;  4QDD A;  4HM4 A;  4HM3 A;  2DE6 A;  4OGQ D;  2QPZ A;  4NBE A;  3VMH A;  2CKF A;  2A06 E;  1ZRT E;  4QUP A;  3VMI D;  1BCC E;  1NTK E;  3GL2 A;  4NBA D;  2DE5 A;  5HL4 A;  3L72 E;  3GZX A;  3L75 E;  1UUV A;  2NVF A;  4NBC A;  5KLI C;  3GZY A;  2HMJ A;  3GCF A;  4HM5 A;  3CX5 E;  2NUK A;  3L73 E;  4HKV A;  3VMG D;  3BCC E;  4NBA A;  3H1J E;  2DE7 A;  1L0L E;  2JO6 A;  1NTZ E;  2ZYL A;  1P84 E;  4NBD D;  4AAY B;  2ZT9 D;  2QJP C;  4U3F E;  1NTM E;  4NBG A;  2E74 D;  1PP9 E;  2QJY C;  1JM1 A;  1SQQ E;  2XR8 A;  4NBH D;  5KLV E;  3H1H E;  3EQQ A;  2NVE A;  4NBB D;  4QDF A;  2E4P A;  2GBW A;  5BOK A;  3C0D A;  1L0N E;  4P1B H;  3GL0 A;  4NB9 D;  1O7P A;  1WQL A;  2BMQ A;  3L71 E;  2E75 D;  2I7F A;  4HM7 A;  4NB8 D;  2NUM A;  3AZC A;  3GCE A;  1O7N A;  3VMI A;  1SJG A;  4QUR A;  2QJK C;  3CXH E;  1O7H A;  1NDO A;  2Q3W A;  4HM1 A;  2IBZ E;  2B1X A;  3FOU A;  2B24 A;  4QDF B;  3H1L E;  3H1K E;  1SQV E;  2NVG A;  2YFI A;  5AEU A;  5CXM A;  1Q90 C;  4PD4 E;  4H13 D;  3TGU E;  4NBF D;  1BE3 E;  3VMG A;  1NU1 E;  1ULI A;  2XRX A;  1VM9 A;  3GTE A;  4NBD A;  1Z03 A;  5AEW A;  2BCC E;  2HMK A;  4HM8 A;  4HM6 A;  1VCK A;  4H44 D;  4NBH A;  1SQX E;  1VF5 D; 
#chains in the Genus database with same CATH homology
 2BMO A;  4QUQ A;  2DE6 D;  1Z01 A;  3N0Q A;  1O7G A;  4NBB A;  3VMH D;  4NBE D;  4P1C H;  2BMR A;  3H1I E;  4AIV A;  3L74 E;  2YFJ A;  4NB9 A;  1KYO E;  2DE5 D;  4HJL A;  2GBX A;  2HMM A;  1UUW A;  1KB9 E;  3GOB A;  2YFL A;  4PV1 D;  4NB8 A;  2FYN C;  1RFS A;  1SQB E;  3VCP A;  3GKE A;  2HMN A;  4HM0 A;  4QCK A;  2YVJ B;  2E4Q A;  4NBC D;  3GB4 A;  2HMO A;  1G8J B;  3L70 E;  4EMJ B;  1EZV E;  2NWF A;  2DE7 D;  2FYU E;  4QDC A;  1RIE A;  1WW9 A;  1EG9 A;  3GTS A;  3CWB E;  1Z02 A;  1O7W A;  2XSO A;  4NBG D;  4HM2 A;  3VCA A;  4NBF A;  2YIU C;  1G8K B;  2HML A;  5KKZ C;  3GKQ A;  1NYK A;  2D2C D;  2XSH A;  1O7M A;  2E76 D;  3D89 A;  3DQY A;  4H0L D;  1SQP E;  3EN1 A;  1FQT A;  1PPJ E;  1ULJ A;  2JZA A;  4QDD A;  4HM4 A;  4HM3 A;  2DE6 A;  4OGQ D;  2QPZ A;  4NBE A;  3VMH A;  2CKF A;  2A06 E;  1ZRT E;  4QUP A;  3VMI D;  1BCC E;  1NTK E;  3GL2 A;  4NBA D;  2DE5 A;  5HL4 A;  3L72 E;  3GZX A;  3L75 E;  1UUV A;  2NVF A;  4NBC A;  5KLI C;  3GZY A;  2HMJ A;  3GCF A;  4HM5 A;  3CX5 E;  2NUK A;  3L73 E;  4HKV A;  3VMG D;  3BCC E;  4NBA A;  3H1J E;  2DE7 A;  1L0L E;  2JO6 A;  1NTZ E;  2ZYL A;  1P84 E;  4NBD D;  4AAY B;  2ZT9 D;  2QJP C;  4U3F E;  1NTM E;  4NBG A;  2E74 D;  1PP9 E;  2QJY C;  1JM1 A;  1SQQ E;  2XR8 A;  4NBH D;  5KLV E;  3H1H E;  3EQQ A;  2NVE A;  4NBB D;  4QDF A;  2E4P A;  2GBW A;  5BOK A;  3C0D A;  1L0N E;  4P1B H;  3GL0 A;  4NB9 D;  1O7P A;  1WQL A;  2BMQ A;  3L71 E;  2E75 D;  2I7F A;  4HM7 A;  4NB8 D;  2NUM A;  3AZC A;  3GCE A;  1O7N A;  3VMI A;  1SJG A;  4QUR A;  2QJK C;  3CXH E;  1O7H A;  1NDO A;  2Q3W A;  4HM1 A;  2IBZ E;  2B1X A;  3FOU A;  2B24 A;  4QDF B;  3H1L E;  3H1K E;  1SQV E;  2NVG A;  2YFI A;  5AEU A;  5CXM A;  1Q90 C;  4PD4 E;  4H13 D;  3TGU E;  4NBF D;  1BE3 E;  3VMG A;  1NU1 E;  1ULI A;  2XRX A;  1VM9 A;  3GTE A;  4NBD A;  1Z03 A;  5AEW A;  2BCC E;  2HMK A;  4HM8 A;  4HM6 A;  1VCK A;  4H44 D;  4NBH A;  1SQX E;  1VF5 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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