3N0QA

Crystal structure of a putative aromatic-ring hydroxylating dioxygenase (tm1040_3219) from silicibacter sp. tm1040 at 1.80 a resolution
Total Genus 131
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
131
sequence length
402
structure length
402
Chain Sequence
MHSNINTLIANHRAGHALDQAFYTDAEVFQTDLQEIFYKEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIRAFHNACRHRGSVICKAKKGNNPKLVCPYHQWTYELDGRLLWARDMGPDFEPSRHGLKTVHCRELAGLIYICLADEAPDFERFAEVARPYLEVHDLSNAKVAHESSIVERGNWKLVWENNRECYHCGGNHPALCRTFPDDPSVTGIEGGETPSNLQAHFDRCEQAGMPSGFHLSGDGQFRVARMPLKEGAESYTMDGKTAVRRWLGRAAFADAGSLLKFHYPTTWNHFLSDHSIVFRVTPISPTETEVTTKWLVHKDAVEGVDYDLQRLTEVWIATNDEDREVVEFNQMGINSPAYEPGPYSPTQESGVLQFVEWYLSTLKRNSGP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a Putative aromatic-ring hydroxylating dioxygenase (TM1040_3219) from SILICIBACTER SP. TM1040 at 1.80 A resolution
rcsb
source organism Ruegeria sp. tm1040
molecule tags Oxidoreductase
molecule keywords Putative aromatic-ring hydroxylating dioxygenase
total genus 131
structure length 402
sequence length 402
ec nomenclature
pdb deposition date 2010-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3n0qA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 3n0qA01
3H1JE 4AAYB 2E4PA 4HM2A 3GB4A 1SQQE 2QJPC 1UUVA 2DE6D 4NBFA 4NBGD 2NUKA 2YFLA 2DE5D 4HM0A 1UUWA 5AEWA 3L74E 4AIVA 2QJKC 2I7FA 3FOUA 2NVFA 3GL0A 3GTEA 4PV1D 4NBCD 1NTME 1JM1A 1SJGA 3L72E 5AEUA 1VF5D 1O7MA 2A06E 5CXMA 2QJYC 2NUMA 2BCCE 4HM8A 1Z02A 4HM6A 2NVEA 2Q3WA 4HKVA 4QDFB 1G8JB 4QCKA 4QURA 4QDFA 2E4QA 1KB9E 3EN1A 4NBDD 1RIEA 3L75E 2GBWA 4HM1A 2HMKA 1O7WA 1Z01A 2E76D 1Q90C 1SQVE 5KLVE 4NBHD 5HL4A 1O7NA 3VMGA 2BMOA 4HM7A 4P1BH 2XRXA 4H13D 3VMIA 3AZCA 2HMOA 2B24A 5KKZC 2DE5A 1EG9A 2E74D 4P1CH 4U3FE 2JO6A 3CWBE 3L71E 3N0QA 2E75D 3C0DA 3H1HE 4QDDA 2YFIA 3D89A 1EZVE 3GTSA 4NBHA 3VMGD 1NYKA 1VCKA 5KLIC 4HM4A 2FYUE 1O7PA 3H1KE 3TGUE 2GBXA 4NBFD 4NB8A 1O7GA 4QUQA 1NTKE 2DE6A 1PP9E 1FQTA 1PPJE 1WW9A 4NBGA 4NBEA 2YFJA 1BE3E 1L0NE 1NDOA 3BCCE 3GOBA 4NB8D 4NBAA 1O7HA 2CKFA 2BMQA 1NTZE 3VCAA 4HM3A 4NBCA 2XSOA 3VMHA 3L73E 2YVJB 2JZAA 1SQXE 3GZXA 3GL2A 3H1LE 1VM9A 4PD4E 1ULIA 1ZRTE 1ULJA 4H44D 3VMID 1SQBE 4NBAD 2D2CD 2QPZA 3L70E 4HJLA 2IBZE 3GCFA 4OGQD 2NVGA 3GKQA 2HMNA 2YIUC 1BCCE 3CX5E 4QDCA 4H0LD 4HM5A 4QUPA 2ZT9D 3CXHE 1NU1E 2HMLA 1L0LE 1RFSA 3VMHD 4EMJB 3H1IE 4NBBA 2XSHA 1KYOE 4NB9A 2FYNC 3GCEA 2NWFA 2XR8A 2B1XA 1Z03A 1WQLA 3GKEA 3GZYA 2BMRA 1P84E 2DE7D 4NB9D 2ZYLA 4NBED 4NBBD 3VCPA 1G8KB 3DQYA 2HMMA 3EQQA 5BOKA 4NBDA 2DE7A 2HMJA 1SQPE
chains in the Genus database with same CATH superfamily
3H1JE 4AAYB 2E4PA 4HM2A 3GB4A 1SQQE 2QJPC 1UUVA 2DE6D 4NBFA 4NBGD 2NUKA 2YFLA 2DE5D 4HM0A 1UUWA 5AEWA 3L74E 4AIVA 2QJKC 2I7FA 3FOUA 2NVFA 3GL0A 3GTEA 4PV1D 4NBCD 1NTME 1JM1A 1SJGA 3L72E 5AEUA 1VF5D 1O7MA 2A06E 5CXMA 2QJYC 2NUMA 2BCCE 4HM8A 1Z02A 4HM6A 2NVEA 2Q3WA 4HKVA 4QDFB 1G8JB 4QCKA 4QURA 4QDFA 2E4QA 1KB9E 3EN1A 4NBDD 1RIEA 3L75E 2GBWA 4HM1A 2HMKA 1O7WA 1Z01A 2E76D 1Q90C 1SQVE 5KLVE 4NBHD 5HL4A 1O7NA 3VMGA 2BMOA 4HM7A 4P1BH 2XRXA 4H13D 3VMIA 3AZCA 2HMOA 2B24A 5KKZC 2DE5A 1EG9A 2E74D 4P1CH 4U3FE 2JO6A 3CWBE 3L71E 3N0QA 2E75D 3C0DA 3H1HE 4QDDA 2YFIA 3D89A 1EZVE 3GTSA 4NBHA 3VMGD 1NYKA 1VCKA 5KLIC 4HM4A 2FYUE 1O7PA 3H1KE 3TGUE 2GBXA 4NBFD 4NB8A 1O7GA 4QUQA 1NTKE 2DE6A 1PP9E 1FQTA 1PPJE 1WW9A 4NBGA 4NBEA 2YFJA 1BE3E 1L0NE 1NDOA 3BCCE 3GOBA 4NB8D 4NBAA 1O7HA 2CKFA 2BMQA 1NTZE 3VCAA 4HM3A 4NBCA 2XSOA 3VMHA 3L73E 2YVJB 2JZAA 1SQXE 3GZXA 3GL2A 3H1LE 1VM9A 4PD4E 1ULIA 1ZRTE 1ULJA 4H44D 3VMID 1SQBE 4NBAD 2D2CD 2QPZA 3L70E 4HJLA 2IBZE 3GCFA 4OGQD 2NVGA 3GKQA 2HMNA 2YIUC 1BCCE 3CX5E 4QDCA 4H0LD 4HM5A 4QUPA 2ZT9D 3CXHE 1NU1E 2HMLA 1L0LE 1RFSA 3VMHD 4EMJB 3H1IE 4NBBA 2XSHA 1KYOE 4NB9A 2FYNC 3GCEA 2NWFA 2XR8A 2B1XA 1Z03A 1WQLA 3GKEA 3GZYA 2BMRA 1P84E 2DE7D 4NB9D 2ZYLA 4NBED 4NBBD 3VCPA 1G8KB 3DQYA 2HMMA 3EQQA 5BOKA 4NBDA 2DE7A 2HMJA 1SQPE
chains in the Genus database with same CATH topology
3H1JE 4AAYB 2E4PA 4HM2A 3GB4A 1SQQE 2QJPC 1UUVA 2DE6D 4NBFA 4NBGD 2NUKA 2YFLA 2DE5D 4HM0A 1UUWA 5AEWA 3L74E 4AIVA 2QJKC 2I7FA 3FOUA 2NVFA 3GL0A 3GTEA 4PV1D 4NBCD 1NTME 1JM1A 1SJGA 3L72E 5AEUA 1VF5D 1O7MA 2A06E 5CXMA 2QJYC 2NUMA 2BCCE 4HM8A 1Z02A 4HM6A 2NVEA 2Q3WA 4HKVA 4QDFB 1G8JB 4QCKA 4QURA 4QDFA 2E4QA 1KB9E 3EN1A 4NBDD 1RIEA 3L75E 2GBWA 4HM1A 2HMKA 1O7WA 1Z01A 2E76D 1Q90C 1SQVE 5KLVE 4NBHD 5HL4A 1O7NA 3VMGA 2BMOA 4HM7A 4P1BH 2XRXA 4H13D 3VMIA 3AZCA 2HMOA 2B24A 5KKZC 2DE5A 1EG9A 2E74D 4P1CH 4U3FE 2JO6A 3CWBE 3L71E 3N0QA 2E75D 3C0DA 3H1HE 4QDDA 2YFIA 3D89A 1EZVE 3GTSA 4NBHA 3VMGD 1NYKA 1VCKA 5KLIC 4HM4A 2FYUE 1O7PA 3H1KE 3TGUE 2GBXA 4NBFD 4NB8A 1O7GA 4QUQA 1NTKE 2DE6A 1PP9E 1FQTA 1PPJE 1WW9A 4NBGA 4NBEA 2YFJA 1BE3E 1L0NE 1NDOA 3BCCE 3GOBA 4NB8D 4NBAA 1O7HA 2CKFA 2BMQA 1NTZE 3VCAA 4HM3A 4NBCA 2XSOA 3VMHA 3L73E 2YVJB 2JZAA 1SQXE 3GZXA 3GL2A 3H1LE 1VM9A 4PD4E 1ULIA 1ZRTE 1ULJA 4H44D 3VMID 1SQBE 4NBAD 2D2CD 2QPZA 3L70E 4HJLA 2IBZE 3GCFA 4OGQD 2NVGA 3GKQA 2HMNA 2YIUC 1BCCE 3CX5E 4QDCA 4H0LD 4HM5A 4QUPA 2ZT9D 3CXHE 1NU1E 2HMLA 1L0LE 1RFSA 3VMHD 4EMJB 3H1IE 4NBBA 2XSHA 1KYOE 4NB9A 2FYNC 3GCEA 2NWFA 2XR8A 2B1XA 1Z03A 1WQLA 3GKEA 3GZYA 2BMRA 1P84E 2DE7D 4NB9D 2ZYLA 4NBED 4NBBD 3VCPA 1G8KB 3DQYA 2HMMA 3EQQA 5BOKA 4NBDA 2DE7A 2HMJA 1SQPE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3H1J E;  4AAY B;  2E4P A;  4HM2 A;  3GB4 A;  1SQQ E;  2QJP C;  1UUV A;  2DE6 D;  4NBF A;  4NBG D;  2NUK A;  2YFL A;  2DE5 D;  4HM0 A;  1UUW A;  5AEW A;  3L74 E;  4AIV A;  2QJK C;  2I7F A;  3FOU A;  2NVF A;  3GL0 A;  3GTE A;  4PV1 D;  4NBC D;  1NTM E;  1JM1 A;  1SJG A;  3L72 E;  5AEU A;  1VF5 D;  1O7M A;  2A06 E;  5CXM A;  2QJY C;  2NUM A;  2BCC E;  4HM8 A;  1Z02 A;  4HM6 A;  2NVE A;  2Q3W A;  4HKV A;  4QDF B;  1G8J B;  4QCK A;  4QUR A;  4QDF A;  2E4Q A;  1KB9 E;  3EN1 A;  4NBD D;  1RIE A;  3L75 E;  2GBW A;  4HM1 A;  2HMK A;  1O7W A;  1Z01 A;  2E76 D;  1Q90 C;  1SQV E;  5KLV E;  4NBH D;  5HL4 A;  1O7N A;  3VMG A;  2BMO A;  4HM7 A;  4P1B H;  2XRX A;  4H13 D;  3VMI A;  3AZC A;  2HMO A;  2B24 A;  5KKZ C;  2DE5 A;  1EG9 A;  2E74 D;  4P1C H;  4U3F E;  2JO6 A;  3CWB E;  3L71 E;  3N0Q A;  2E75 D;  3C0D A;  3H1H E;  4QDD A;  2YFI A;  3D89 A;  1EZV E;  3GTS A;  4NBH A;  3VMG D;  1NYK A;  1VCK A;  5KLI C;  4HM4 A;  2FYU E;  1O7P A;  3H1K E;  3TGU E;  2GBX A;  4NBF D;  4NB8 A;  1O7G A;  4QUQ A;  1NTK E;  2DE6 A;  1PP9 E;  1FQT A;  1PPJ E;  1WW9 A;  4NBG A;  4NBE A;  2YFJ A;  1BE3 E;  1L0N E;  1NDO A;  3BCC E;  3GOB A;  4NB8 D;  4NBA A;  1O7H A;  2CKF A;  2BMQ A;  1NTZ E;  3VCA A;  4HM3 A;  4NBC A;  2XSO A;  3VMH A;  3L73 E;  2YVJ B;  2JZA A;  1SQX E;  3GZX A;  3GL2 A;  3H1L E;  1VM9 A;  4PD4 E;  1ULI A;  1ZRT E;  1ULJ A;  4H44 D;  3VMI D;  1SQB E;  4NBA D;  2D2C D;  2QPZ A;  3L70 E;  4HJL A;  2IBZ E;  3GCF A;  4OGQ D;  2NVG A;  3GKQ A;  2HMN A;  2YIU C;  1BCC E;  3CX5 E;  4QDC A;  4H0L D;  4HM5 A;  4QUP A;  2ZT9 D;  3CXH E;  1NU1 E;  2HML A;  1L0L E;  1RFS A;  3VMH D;  4EMJ B;  3H1I E;  4NBB A;  2XSH A;  1KYO E;  4NB9 A;  2FYN C;  3GCE A;  2NWF A;  2XR8 A;  2B1X A;  1Z03 A;  1WQL A;  3GKE A;  3GZY A;  2BMR A;  1P84 E;  2DE7 D;  4NB9 D;  2ZYL A;  4NBE D;  4NBB D;  3VCP A;  1G8K B;  3DQY A;  2HMM A;  3EQQ A;  5BOK A;  4NBD A;  2DE7 A;  2HMJ A;  1SQP E; 
#chains in the Genus database with same CATH topology
 3H1J E;  4AAY B;  2E4P A;  4HM2 A;  3GB4 A;  1SQQ E;  2QJP C;  1UUV A;  2DE6 D;  4NBF A;  4NBG D;  2NUK A;  2YFL A;  2DE5 D;  4HM0 A;  1UUW A;  5AEW A;  3L74 E;  4AIV A;  2QJK C;  2I7F A;  3FOU A;  2NVF A;  3GL0 A;  3GTE A;  4PV1 D;  4NBC D;  1NTM E;  1JM1 A;  1SJG A;  3L72 E;  5AEU A;  1VF5 D;  1O7M A;  2A06 E;  5CXM A;  2QJY C;  2NUM A;  2BCC E;  4HM8 A;  1Z02 A;  4HM6 A;  2NVE A;  2Q3W A;  4HKV A;  4QDF B;  1G8J B;  4QCK A;  4QUR A;  4QDF A;  2E4Q A;  1KB9 E;  3EN1 A;  4NBD D;  1RIE A;  3L75 E;  2GBW A;  4HM1 A;  2HMK A;  1O7W A;  1Z01 A;  2E76 D;  1Q90 C;  1SQV E;  5KLV E;  4NBH D;  5HL4 A;  1O7N A;  3VMG A;  2BMO A;  4HM7 A;  4P1B H;  2XRX A;  4H13 D;  3VMI A;  3AZC A;  2HMO A;  2B24 A;  5KKZ C;  2DE5 A;  1EG9 A;  2E74 D;  4P1C H;  4U3F E;  2JO6 A;  3CWB E;  3L71 E;  3N0Q A;  2E75 D;  3C0D A;  3H1H E;  4QDD A;  2YFI A;  3D89 A;  1EZV E;  3GTS A;  4NBH A;  3VMG D;  1NYK A;  1VCK A;  5KLI C;  4HM4 A;  2FYU E;  1O7P A;  3H1K E;  3TGU E;  2GBX A;  4NBF D;  4NB8 A;  1O7G A;  4QUQ A;  1NTK E;  2DE6 A;  1PP9 E;  1FQT A;  1PPJ E;  1WW9 A;  4NBG A;  4NBE A;  2YFJ A;  1BE3 E;  1L0N E;  1NDO A;  3BCC E;  3GOB A;  4NB8 D;  4NBA A;  1O7H A;  2CKF A;  2BMQ A;  1NTZ E;  3VCA A;  4HM3 A;  4NBC A;  2XSO A;  3VMH A;  3L73 E;  2YVJ B;  2JZA A;  1SQX E;  3GZX A;  3GL2 A;  3H1L E;  1VM9 A;  4PD4 E;  1ULI A;  1ZRT E;  1ULJ A;  4H44 D;  3VMI D;  1SQB E;  4NBA D;  2D2C D;  2QPZ A;  3L70 E;  4HJL A;  2IBZ E;  3GCF A;  4OGQ D;  2NVG A;  3GKQ A;  2HMN A;  2YIU C;  1BCC E;  3CX5 E;  4QDC A;  4H0L D;  4HM5 A;  4QUP A;  2ZT9 D;  3CXH E;  1NU1 E;  2HML A;  1L0L E;  1RFS A;  3VMH D;  4EMJ B;  3H1I E;  4NBB A;  2XSH A;  1KYO E;  4NB9 A;  2FYN C;  3GCE A;  2NWF A;  2XR8 A;  2B1X A;  1Z03 A;  1WQL A;  3GKE A;  3GZY A;  2BMR A;  1P84 E;  2DE7 D;  4NB9 D;  2ZYL A;  4NBE D;  4NBB D;  3VCP A;  1G8K B;  3DQY A;  2HMM A;  3EQQ A;  5BOK A;  4NBD A;  2DE7 A;  2HMJ A;  1SQP E; 
#chains in the Genus database with same CATH homology
 3H1J E;  4AAY B;  2E4P A;  4HM2 A;  3GB4 A;  1SQQ E;  2QJP C;  1UUV A;  2DE6 D;  4NBF A;  4NBG D;  2NUK A;  2YFL A;  2DE5 D;  4HM0 A;  1UUW A;  5AEW A;  3L74 E;  4AIV A;  2QJK C;  2I7F A;  3FOU A;  2NVF A;  3GL0 A;  3GTE A;  4PV1 D;  4NBC D;  1NTM E;  1JM1 A;  1SJG A;  3L72 E;  5AEU A;  1VF5 D;  1O7M A;  2A06 E;  5CXM A;  2QJY C;  2NUM A;  2BCC E;  4HM8 A;  1Z02 A;  4HM6 A;  2NVE A;  2Q3W A;  4HKV A;  4QDF B;  1G8J B;  4QCK A;  4QUR A;  4QDF A;  2E4Q A;  1KB9 E;  3EN1 A;  4NBD D;  1RIE A;  3L75 E;  2GBW A;  4HM1 A;  2HMK A;  1O7W A;  1Z01 A;  2E76 D;  1Q90 C;  1SQV E;  5KLV E;  4NBH D;  5HL4 A;  1O7N A;  3VMG A;  2BMO A;  4HM7 A;  4P1B H;  2XRX A;  4H13 D;  3VMI A;  3AZC A;  2HMO A;  2B24 A;  5KKZ C;  2DE5 A;  1EG9 A;  2E74 D;  4P1C H;  4U3F E;  2JO6 A;  3CWB E;  3L71 E;  3N0Q A;  2E75 D;  3C0D A;  3H1H E;  4QDD A;  2YFI A;  3D89 A;  1EZV E;  3GTS A;  4NBH A;  3VMG D;  1NYK A;  1VCK A;  5KLI C;  4HM4 A;  2FYU E;  1O7P A;  3H1K E;  3TGU E;  2GBX A;  4NBF D;  4NB8 A;  1O7G A;  4QUQ A;  1NTK E;  2DE6 A;  1PP9 E;  1FQT A;  1PPJ E;  1WW9 A;  4NBG A;  4NBE A;  2YFJ A;  1BE3 E;  1L0N E;  1NDO A;  3BCC E;  3GOB A;  4NB8 D;  4NBA A;  1O7H A;  2CKF A;  2BMQ A;  1NTZ E;  3VCA A;  4HM3 A;  4NBC A;  2XSO A;  3VMH A;  3L73 E;  2YVJ B;  2JZA A;  1SQX E;  3GZX A;  3GL2 A;  3H1L E;  1VM9 A;  4PD4 E;  1ULI A;  1ZRT E;  1ULJ A;  4H44 D;  3VMI D;  1SQB E;  4NBA D;  2D2C D;  2QPZ A;  3L70 E;  4HJL A;  2IBZ E;  3GCF A;  4OGQ D;  2NVG A;  3GKQ A;  2HMN A;  2YIU C;  1BCC E;  3CX5 E;  4QDC A;  4H0L D;  4HM5 A;  4QUP A;  2ZT9 D;  3CXH E;  1NU1 E;  2HML A;  1L0L E;  1RFS A;  3VMH D;  4EMJ B;  3H1I E;  4NBB A;  2XSH A;  1KYO E;  4NB9 A;  2FYN C;  3GCE A;  2NWF A;  2XR8 A;  2B1X A;  1Z03 A;  1WQL A;  3GKE A;  3GZY A;  2BMR A;  1P84 E;  2DE7 D;  4NB9 D;  2ZYL A;  4NBE D;  4NBB D;  3VCP A;  1G8K B;  3DQY A;  2HMM A;  3EQQ A;  5BOK A;  4NBD A;  2DE7 A;  2HMJ A;  1SQP E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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