3N0QA

Crystal structure of a putative aromatic-ring hydroxylating dioxygenase (tm1040_3219) from silicibacter sp. tm1040 at 1.80 a resolution
Total Genus 131
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
131
sequence length
402
structure length
402
Chain Sequence
MHSNINTLIANHRAGHALDQAFYTDAEVFQTDLQEIFYKEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIRAFHNACRHRGSVICKAKKGNNPKLVCPYHQWTYELDGRLLWARDMGPDFEPSRHGLKTVHCRELAGLIYICLADEAPDFERFAEVARPYLEVHDLSNAKVAHESSIVERGNWKLVWENNRECYHCGGNHPALCRTFPDDPSVTGIEGGETPSNLQAHFDRCEQAGMPSGFHLSGDGQFRVARMPLKEGAESYTMDGKTAVRRWLGRAAFADAGSLLKFHYPTTWNHFLSDHSIVFRVTPISPTETEVTTKWLVHKDAVEGVDYDLQRLTEVWIATNDEDREVVEFNQMGINSPAYEPGPYSPTQESGVLQFVEWYLSTLKRNSGP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Putative aromatic-ring hydroxylating dioxygenase
publication title Crystal structure of a Putative aromatic-ring hydroxylating dioxygenase (TM1040_3219) from SILICIBACTER SP. TM1040 at 1.80 A resolution
rcsb
source organism Ruegeria sp. tm1040
total genus 131
structure length 402
sequence length 402
ec nomenclature
pdb deposition date 2010-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 3n0qA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 3n0qA01
3C0DA 2GBXA 2YVJB 2BMOA 4NBGD 1NYKA 4H13D 2BMQA 4U3FE 4H0LD 4HM1A 1O7GA 2NVEA 1PPJE 2DE6D 3CX5E 2GBWA 2FYNC 1SQXE 2BMRA 4NBED 3GKEA 1RIEA 4NBGA 1UUVA 2NUKA 1Q90C 1EZVE 2YFIA 4QUPA 2QJYC 1EG9A 4HM4A 4NBAD 3TGUE 2DE6A 2HMKA 4NBEA 2E75D 5BOKA 2FYUE 3GCFA 1BCCE 1O7WA 2IBZE 4PV1D 2XRXA 2HMMA 5KLIC 1NTKE 1VM9A 1G8KB 2BCCE 3GTSA 2DE5D 4NBAA 3CWBE 4NBHD 1SQVE 2XSOA 4HJLA 2NVGA 2HMOA 3GB4A 2D2CD 3H1KE 4QDDA 1L0LE 1Z01A 1BE3E 4HM6A 4QUQA 4NBCD 3N0QA 2HMJA 1NU1E 1ZRTE 2B1XA 3GCEA 3L73E 4NBDD 5AEUA 2DE5A 4NBHA 1PP9E 3BCCE 4NBBD 2E4PA 2JO6A 1WW9A 1Z03A 2E76D 1ULJA 5CXMA 4NBCA 2QJKC 2NVFA 3EN1A 4P1CH 3GTEA 4NBDA 3FOUA 4HM7A 3H1HE 1SJGA 4HM0A 4NBBA 1O7MA 3AZCA 4QCKA 4OGQD 2QPZA 3L74E 4HKVA 1NTME 2ZYLA 3H1JE 3GZXA 4HM2A 1RFSA 1O7PA 4HM8A 3H1IE 5KLVE 1VF5D 1NDOA 5KKZC 3VMHD 1O7NA 1WQLA 2B24A 1ULIA 3VCPA 4NB8D 1G8JB 1Z02A 4NB9D 4QDFA 1FQTA 3GL0A 3VMHA 3VCAA 3GZYA 4QURA 4HM5A 3L71E 4QDCA 2DE7D 1P84E 1SQQE 2NUMA 3GL2A 4NB8A 2Q3WA 1KYOE 2I7FA 4PD4E 4NB9A 4AAYB 3CXHE 1O7HA 2QJPC 1KB9E 3DQYA 3L70E 1VCKA 4NBFD 3EQQA 3D89A 2E74D 2DE7A 3L75E 1SQPE 3VMGD 2XSHA 4HM3A 3VMID 3GKQA 2YFJA 1SQBE 2XR8A 2NWFA 4H44D 4NBFA 2E4QA 2YIUC 2A06E 3VMGA 2HMNA 4P1BH 2CKFA 5AEWA 2YFLA 5HL4A 3GOBA 2ZT9D 1L0NE 3H1LE 3VMIA 1NTZE 1UUWA 2JZAA 4AIVA 4EMJB 1JM1A 4QDFB 3L72E 2HMLA
chains in the Genus database with same CATH superfamily
3C0DA 2GBXA 2YVJB 2BMOA 4NBGD 1NYKA 4H13D 2BMQA 4U3FE 4H0LD 4HM1A 1O7GA 2NVEA 1PPJE 2DE6D 3CX5E 2GBWA 2FYNC 1SQXE 2BMRA 4NBED 3GKEA 1RIEA 4NBGA 1UUVA 2NUKA 1Q90C 1EZVE 2YFIA 4QUPA 2QJYC 1EG9A 4HM4A 4NBAD 3TGUE 2DE6A 2HMKA 4NBEA 2E75D 5BOKA 2FYUE 3GCFA 1BCCE 1O7WA 2IBZE 4PV1D 2XRXA 2HMMA 5KLIC 1NTKE 1VM9A 1G8KB 2BCCE 3GTSA 2DE5D 4NBAA 3CWBE 4NBHD 1SQVE 2XSOA 4HJLA 2NVGA 2HMOA 3GB4A 2D2CD 3H1KE 4QDDA 1L0LE 1Z01A 1BE3E 4HM6A 4QUQA 4NBCD 3N0QA 2HMJA 1NU1E 1ZRTE 2B1XA 3GCEA 3L73E 4NBDD 5AEUA 2DE5A 4NBHA 1PP9E 3BCCE 4NBBD 2E4PA 2JO6A 1WW9A 1Z03A 2E76D 1ULJA 5CXMA 4NBCA 2QJKC 2NVFA 3EN1A 4P1CH 3GTEA 4NBDA 3FOUA 4HM7A 3H1HE 1SJGA 4HM0A 4NBBA 1O7MA 3AZCA 4QCKA 4OGQD 2QPZA 3L74E 4HKVA 1NTME 2ZYLA 3H1JE 3GZXA 4HM2A 1RFSA 1O7PA 4HM8A 3H1IE 5KLVE 1VF5D 1NDOA 5KKZC 3VMHD 1O7NA 1WQLA 2B24A 1ULIA 3VCPA 4NB8D 1G8JB 1Z02A 4NB9D 4QDFA 1FQTA 3GL0A 3VMHA 3VCAA 3GZYA 4QURA 4HM5A 3L71E 4QDCA 2DE7D 1P84E 1SQQE 2NUMA 3GL2A 4NB8A 2Q3WA 1KYOE 2I7FA 4PD4E 4NB9A 4AAYB 3CXHE 1O7HA 2QJPC 1KB9E 3DQYA 3L70E 1VCKA 4NBFD 3EQQA 3D89A 2E74D 2DE7A 3L75E 1SQPE 3VMGD 2XSHA 4HM3A 3VMID 3GKQA 2YFJA 1SQBE 2XR8A 2NWFA 4H44D 4NBFA 2E4QA 2YIUC 2A06E 3VMGA 2HMNA 4P1BH 2CKFA 5AEWA 2YFLA 5HL4A 3GOBA 2ZT9D 1L0NE 3H1LE 3VMIA 1NTZE 1UUWA 2JZAA 4AIVA 4EMJB 1JM1A 4QDFB 3L72E 2HMLA
chains in the Genus database with same CATH topology
3C0DA 2GBXA 2YVJB 2BMOA 4NBGD 1NYKA 4H13D 2BMQA 4U3FE 4H0LD 4HM1A 1O7GA 2NVEA 1PPJE 2DE6D 3CX5E 2GBWA 2FYNC 1SQXE 2BMRA 4NBED 3GKEA 1RIEA 4NBGA 1UUVA 2NUKA 1Q90C 1EZVE 2YFIA 4QUPA 2QJYC 1EG9A 4HM4A 4NBAD 3TGUE 2DE6A 2HMKA 4NBEA 2E75D 5BOKA 2FYUE 3GCFA 1BCCE 1O7WA 2IBZE 4PV1D 2XRXA 2HMMA 5KLIC 1NTKE 1VM9A 1G8KB 2BCCE 3GTSA 2DE5D 4NBAA 3CWBE 4NBHD 1SQVE 2XSOA 4HJLA 2NVGA 2HMOA 3GB4A 2D2CD 3H1KE 4QDDA 1L0LE 1Z01A 1BE3E 4HM6A 4QUQA 4NBCD 3N0QA 2HMJA 1NU1E 1ZRTE 2B1XA 3GCEA 3L73E 4NBDD 5AEUA 2DE5A 4NBHA 1PP9E 3BCCE 4NBBD 2E4PA 2JO6A 1WW9A 1Z03A 2E76D 1ULJA 5CXMA 4NBCA 2QJKC 2NVFA 3EN1A 4P1CH 3GTEA 4NBDA 3FOUA 4HM7A 3H1HE 1SJGA 4HM0A 4NBBA 1O7MA 3AZCA 4QCKA 4OGQD 2QPZA 3L74E 4HKVA 1NTME 2ZYLA 3H1JE 3GZXA 4HM2A 1RFSA 1O7PA 4HM8A 3H1IE 5KLVE 1VF5D 1NDOA 5KKZC 3VMHD 1O7NA 1WQLA 2B24A 1ULIA 3VCPA 4NB8D 1G8JB 1Z02A 4NB9D 4QDFA 1FQTA 3GL0A 3VMHA 3VCAA 3GZYA 4QURA 4HM5A 3L71E 4QDCA 2DE7D 1P84E 1SQQE 2NUMA 3GL2A 4NB8A 2Q3WA 1KYOE 2I7FA 4PD4E 4NB9A 4AAYB 3CXHE 1O7HA 2QJPC 1KB9E 3DQYA 3L70E 1VCKA 4NBFD 3EQQA 3D89A 2E74D 2DE7A 3L75E 1SQPE 3VMGD 2XSHA 4HM3A 3VMID 3GKQA 2YFJA 1SQBE 2XR8A 2NWFA 4H44D 4NBFA 2E4QA 2YIUC 2A06E 3VMGA 2HMNA 4P1BH 2CKFA 5AEWA 2YFLA 5HL4A 3GOBA 2ZT9D 1L0NE 3H1LE 3VMIA 1NTZE 1UUWA 2JZAA 4AIVA 4EMJB 1JM1A 4QDFB 3L72E 2HMLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C0D A;  2GBX A;  2YVJ B;  2BMO A;  4NBG D;  1NYK A;  4H13 D;  2BMQ A;  4U3F E;  4H0L D;  4HM1 A;  1O7G A;  2NVE A;  1PPJ E;  2DE6 D;  3CX5 E;  2GBW A;  2FYN C;  1SQX E;  2BMR A;  4NBE D;  3GKE A;  1RIE A;  4NBG A;  1UUV A;  2NUK A;  1Q90 C;  1EZV E;  2YFI A;  4QUP A;  2QJY C;  1EG9 A;  4HM4 A;  4NBA D;  3TGU E;  2DE6 A;  2HMK A;  4NBE A;  2E75 D;  5BOK A;  2FYU E;  3GCF A;  1BCC E;  1O7W A;  2IBZ E;  4PV1 D;  2XRX A;  2HMM A;  5KLI C;  1NTK E;  1VM9 A;  1G8K B;  2BCC E;  3GTS A;  2DE5 D;  4NBA A;  3CWB E;  4NBH D;  1SQV E;  2XSO A;  4HJL A;  2NVG A;  2HMO A;  3GB4 A;  2D2C D;  3H1K E;  4QDD A;  1L0L E;  1Z01 A;  1BE3 E;  4HM6 A;  4QUQ A;  4NBC D;  3N0Q A;  2HMJ A;  1NU1 E;  1ZRT E;  2B1X A;  3GCE A;  3L73 E;  4NBD D;  5AEU A;  2DE5 A;  4NBH A;  1PP9 E;  3BCC E;  4NBB D;  2E4P A;  2JO6 A;  1WW9 A;  1Z03 A;  2E76 D;  1ULJ A;  5CXM A;  4NBC A;  2QJK C;  2NVF A;  3EN1 A;  4P1C H;  3GTE A;  4NBD A;  3FOU A;  4HM7 A;  3H1H E;  1SJG A;  4HM0 A;  4NBB A;  1O7M A;  3AZC A;  4QCK A;  4OGQ D;  2QPZ A;  3L74 E;  4HKV A;  1NTM E;  2ZYL A;  3H1J E;  3GZX A;  4HM2 A;  1RFS A;  1O7P A;  4HM8 A;  3H1I E;  5KLV E;  1VF5 D;  1NDO A;  5KKZ C;  3VMH D;  1O7N A;  1WQL A;  2B24 A;  1ULI A;  3VCP A;  4NB8 D;  1G8J B;  1Z02 A;  4NB9 D;  4QDF A;  1FQT A;  3GL0 A;  3VMH A;  3VCA A;  3GZY A;  4QUR A;  4HM5 A;  3L71 E;  4QDC A;  2DE7 D;  1P84 E;  1SQQ E;  2NUM A;  3GL2 A;  4NB8 A;  2Q3W A;  1KYO E;  2I7F A;  4PD4 E;  4NB9 A;  4AAY B;  3CXH E;  1O7H A;  2QJP C;  1KB9 E;  3DQY A;  3L70 E;  1VCK A;  4NBF D;  3EQQ A;  3D89 A;  2E74 D;  2DE7 A;  3L75 E;  1SQP E;  3VMG D;  2XSH A;  4HM3 A;  3VMI D;  3GKQ A;  2YFJ A;  1SQB E;  2XR8 A;  2NWF A;  4H44 D;  4NBF A;  2E4Q A;  2YIU C;  2A06 E;  3VMG A;  2HMN A;  4P1B H;  2CKF A;  5AEW A;  2YFL A;  5HL4 A;  3GOB A;  2ZT9 D;  1L0N E;  3H1L E;  3VMI A;  1NTZ E;  1UUW A;  2JZA A;  4AIV A;  4EMJ B;  1JM1 A;  4QDF B;  3L72 E;  2HML A; 
#chains in the Genus database with same CATH topology
 3C0D A;  2GBX A;  2YVJ B;  2BMO A;  4NBG D;  1NYK A;  4H13 D;  2BMQ A;  4U3F E;  4H0L D;  4HM1 A;  1O7G A;  2NVE A;  1PPJ E;  2DE6 D;  3CX5 E;  2GBW A;  2FYN C;  1SQX E;  2BMR A;  4NBE D;  3GKE A;  1RIE A;  4NBG A;  1UUV A;  2NUK A;  1Q90 C;  1EZV E;  2YFI A;  4QUP A;  2QJY C;  1EG9 A;  4HM4 A;  4NBA D;  3TGU E;  2DE6 A;  2HMK A;  4NBE A;  2E75 D;  5BOK A;  2FYU E;  3GCF A;  1BCC E;  1O7W A;  2IBZ E;  4PV1 D;  2XRX A;  2HMM A;  5KLI C;  1NTK E;  1VM9 A;  1G8K B;  2BCC E;  3GTS A;  2DE5 D;  4NBA A;  3CWB E;  4NBH D;  1SQV E;  2XSO A;  4HJL A;  2NVG A;  2HMO A;  3GB4 A;  2D2C D;  3H1K E;  4QDD A;  1L0L E;  1Z01 A;  1BE3 E;  4HM6 A;  4QUQ A;  4NBC D;  3N0Q A;  2HMJ A;  1NU1 E;  1ZRT E;  2B1X A;  3GCE A;  3L73 E;  4NBD D;  5AEU A;  2DE5 A;  4NBH A;  1PP9 E;  3BCC E;  4NBB D;  2E4P A;  2JO6 A;  1WW9 A;  1Z03 A;  2E76 D;  1ULJ A;  5CXM A;  4NBC A;  2QJK C;  2NVF A;  3EN1 A;  4P1C H;  3GTE A;  4NBD A;  3FOU A;  4HM7 A;  3H1H E;  1SJG A;  4HM0 A;  4NBB A;  1O7M A;  3AZC A;  4QCK A;  4OGQ D;  2QPZ A;  3L74 E;  4HKV A;  1NTM E;  2ZYL A;  3H1J E;  3GZX A;  4HM2 A;  1RFS A;  1O7P A;  4HM8 A;  3H1I E;  5KLV E;  1VF5 D;  1NDO A;  5KKZ C;  3VMH D;  1O7N A;  1WQL A;  2B24 A;  1ULI A;  3VCP A;  4NB8 D;  1G8J B;  1Z02 A;  4NB9 D;  4QDF A;  1FQT A;  3GL0 A;  3VMH A;  3VCA A;  3GZY A;  4QUR A;  4HM5 A;  3L71 E;  4QDC A;  2DE7 D;  1P84 E;  1SQQ E;  2NUM A;  3GL2 A;  4NB8 A;  2Q3W A;  1KYO E;  2I7F A;  4PD4 E;  4NB9 A;  4AAY B;  3CXH E;  1O7H A;  2QJP C;  1KB9 E;  3DQY A;  3L70 E;  1VCK A;  4NBF D;  3EQQ A;  3D89 A;  2E74 D;  2DE7 A;  3L75 E;  1SQP E;  3VMG D;  2XSH A;  4HM3 A;  3VMI D;  3GKQ A;  2YFJ A;  1SQB E;  2XR8 A;  2NWF A;  4H44 D;  4NBF A;  2E4Q A;  2YIU C;  2A06 E;  3VMG A;  2HMN A;  4P1B H;  2CKF A;  5AEW A;  2YFL A;  5HL4 A;  3GOB A;  2ZT9 D;  1L0N E;  3H1L E;  3VMI A;  1NTZ E;  1UUW A;  2JZA A;  4AIV A;  4EMJ B;  1JM1 A;  4QDF B;  3L72 E;  2HML A; 
#chains in the Genus database with same CATH homology
 3C0D A;  2GBX A;  2YVJ B;  2BMO A;  4NBG D;  1NYK A;  4H13 D;  2BMQ A;  4U3F E;  4H0L D;  4HM1 A;  1O7G A;  2NVE A;  1PPJ E;  2DE6 D;  3CX5 E;  2GBW A;  2FYN C;  1SQX E;  2BMR A;  4NBE D;  3GKE A;  1RIE A;  4NBG A;  1UUV A;  2NUK A;  1Q90 C;  1EZV E;  2YFI A;  4QUP A;  2QJY C;  1EG9 A;  4HM4 A;  4NBA D;  3TGU E;  2DE6 A;  2HMK A;  4NBE A;  2E75 D;  5BOK A;  2FYU E;  3GCF A;  1BCC E;  1O7W A;  2IBZ E;  4PV1 D;  2XRX A;  2HMM A;  5KLI C;  1NTK E;  1VM9 A;  1G8K B;  2BCC E;  3GTS A;  2DE5 D;  4NBA A;  3CWB E;  4NBH D;  1SQV E;  2XSO A;  4HJL A;  2NVG A;  2HMO A;  3GB4 A;  2D2C D;  3H1K E;  4QDD A;  1L0L E;  1Z01 A;  1BE3 E;  4HM6 A;  4QUQ A;  4NBC D;  3N0Q A;  2HMJ A;  1NU1 E;  1ZRT E;  2B1X A;  3GCE A;  3L73 E;  4NBD D;  5AEU A;  2DE5 A;  4NBH A;  1PP9 E;  3BCC E;  4NBB D;  2E4P A;  2JO6 A;  1WW9 A;  1Z03 A;  2E76 D;  1ULJ A;  5CXM A;  4NBC A;  2QJK C;  2NVF A;  3EN1 A;  4P1C H;  3GTE A;  4NBD A;  3FOU A;  4HM7 A;  3H1H E;  1SJG A;  4HM0 A;  4NBB A;  1O7M A;  3AZC A;  4QCK A;  4OGQ D;  2QPZ A;  3L74 E;  4HKV A;  1NTM E;  2ZYL A;  3H1J E;  3GZX A;  4HM2 A;  1RFS A;  1O7P A;  4HM8 A;  3H1I E;  5KLV E;  1VF5 D;  1NDO A;  5KKZ C;  3VMH D;  1O7N A;  1WQL A;  2B24 A;  1ULI A;  3VCP A;  4NB8 D;  1G8J B;  1Z02 A;  4NB9 D;  4QDF A;  1FQT A;  3GL0 A;  3VMH A;  3VCA A;  3GZY A;  4QUR A;  4HM5 A;  3L71 E;  4QDC A;  2DE7 D;  1P84 E;  1SQQ E;  2NUM A;  3GL2 A;  4NB8 A;  2Q3W A;  1KYO E;  2I7F A;  4PD4 E;  4NB9 A;  4AAY B;  3CXH E;  1O7H A;  2QJP C;  1KB9 E;  3DQY A;  3L70 E;  1VCK A;  4NBF D;  3EQQ A;  3D89 A;  2E74 D;  2DE7 A;  3L75 E;  1SQP E;  3VMG D;  2XSH A;  4HM3 A;  3VMI D;  3GKQ A;  2YFJ A;  1SQB E;  2XR8 A;  2NWF A;  4H44 D;  4NBF A;  2E4Q A;  2YIU C;  2A06 E;  3VMG A;  2HMN A;  4P1B H;  2CKF A;  5AEW A;  2YFL A;  5HL4 A;  3GOB A;  2ZT9 D;  1L0N E;  3H1L E;  3VMI A;  1NTZ E;  1UUW A;  2JZA A;  4AIV A;  4EMJ B;  1JM1 A;  4QDF B;  3L72 E;  2HML A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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