4NBDD

Carbazole-bound oxygenase with phe275 replaced by trp and ferredoxin complex of carbazole 1,9a-dioxygenase (form2)
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
103
structure length
103
Chain Sequence
IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Terminal oxygenase component of carbazole
publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 17
structure length 103
sequence length 103
chains with identical sequence E
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbdD00
3L72E 1SQXE 2HMNA 2NVGA 3GOBA 1O7WA 2B24A 5KLVE 3L71E 1VF5D 3GZXA 2QJYC 2YIUC 3L75E 4HJLA 4NB8D 2HMKA 3VCPA 1NYKA 3GKEA 2HMJA 1O7NA 2QJPC 3DQYA 1G8KB 2ZT9D 1PP9E 3GL0A 3H1HE 3AZCA 2XR8A 4HM7A 1ZRTE 4QDDA 4QDFA 1O7MA 4NBFD 1EZVE 4NBBD 4QDCA 3L74E 3CX5E 1SQQE 1L0LE 2A06E 4H13D 3VCAA 4NBHD 5AEWA 1NTKE 2QPZA 4PV1D 4HM5A 1SQVE 4PD4E 1UUVA 1SQBE 2E76D 2HMMA 2B1XA 4QURA 1VM9A 4HM1A 4P1CH 2E75D 3H1IE 1NDOA 3VMHD 2GBWA 3GCEA 3VMID 1EG9A 3CXHE 1P84E 3EQQA 2XRXA 4NBED 4HM6A 2E74D 2JZAA 1BE3E 2E4QA 2QJKC 2HMLA 1BCCE 3L70E 4P1BH 4HM8A 3EN1A 4OGQD 5CXMA 1VCKA 2D2CD 1UUWA 4EMJB 1O7GA 2BMOA 1NTZE 1NTME 2GBXA 3BCCE 2I7FA 2DE7D 4AAYB 2FYNC 2DE6D 1RFSA 4NBAD 2FYUE 3H1LE 3D89A 2BCCE 3GL2A 4QUQA 2CKFA 5BOKA 2YFIA 3VMGD 2NVEA 2IBZE 2XSOA 2BMQA 2YVJB 3GTEA 3CWBE 2BMRA 4NBCD 1L0NE 1PPJE 2XSHA 2Q3WA 2HMOA 4QDFB 1WQLA 1G8JB 1KB9E 1Q90C 1SJGA 4NBGD 2NWFA 3GTSA 4H0LD 4HM4A 1ULIA 2JO6A 4NB9D 3FOUA 5KKZC 1NU1E 2NVFA 2NUKA 2NUMA 4U3FE 3N0QA 2E4PA 3H1KE 3TGUE 5AEUA 1RIEA 4HKVA 3GB4A 3L73E 3C0DA 4HM2A 1O7HA 1SQPE 2YFJA 4H44D 4NBDD 1ULJA 5KLIC 1O7PA 1FQTA 4HM0A 5HL4A 4QUPA 1JM1A 4HM3A 4AIVA 2DE5D 2ZYLA 1KYOE 3GZYA 3H1JE 4QCKA 2YFLA
chains in the Genus database with same CATH superfamily
3L72E 1SQXE 2HMNA 2NVGA 3GOBA 1O7WA 2B24A 5KLVE 3L71E 1VF5D 3GZXA 2QJYC 2YIUC 3L75E 4HJLA 4NB8D 2HMKA 3VCPA 1NYKA 3GKEA 2HMJA 1O7NA 2QJPC 3DQYA 1G8KB 2ZT9D 1PP9E 3GL0A 3H1HE 3AZCA 2XR8A 4HM7A 1ZRTE 4QDDA 4QDFA 1O7MA 4NBFD 1EZVE 4NBBD 4QDCA 3L74E 3CX5E 1SQQE 1L0LE 2A06E 4H13D 3VCAA 4NBHD 5AEWA 1NTKE 2QPZA 4PV1D 4HM5A 1SQVE 4PD4E 1UUVA 1SQBE 2E76D 2HMMA 2B1XA 4QURA 1VM9A 4HM1A 4P1CH 2E75D 3H1IE 1NDOA 3VMHD 2GBWA 3GCEA 3VMID 1EG9A 3CXHE 1P84E 3EQQA 2XRXA 4NBED 4HM6A 2E74D 2JZAA 1BE3E 2E4QA 2QJKC 2HMLA 1BCCE 3L70E 4P1BH 4HM8A 3EN1A 4OGQD 5CXMA 1VCKA 2D2CD 1UUWA 4EMJB 1O7GA 2BMOA 1NTZE 1NTME 2GBXA 3BCCE 2I7FA 2DE7D 4AAYB 2FYNC 2DE6D 1RFSA 4NBAD 2FYUE 3H1LE 3D89A 2BCCE 3GL2A 4QUQA 2CKFA 5BOKA 2YFIA 3VMGD 2NVEA 2IBZE 2XSOA 2BMQA 2YVJB 3GTEA 3CWBE 2BMRA 4NBCD 1L0NE 1PPJE 2XSHA 2Q3WA 2HMOA 4QDFB 1WQLA 1G8JB 1KB9E 1Q90C 1SJGA 4NBGD 2NWFA 3GTSA 4H0LD 4HM4A 1ULIA 2JO6A 4NB9D 3FOUA 5KKZC 1NU1E 2NVFA 2NUKA 2NUMA 4U3FE 3N0QA 2E4PA 3H1KE 3TGUE 5AEUA 1RIEA 4HKVA 3GB4A 3L73E 3C0DA 4HM2A 1O7HA 1SQPE 2YFJA 4H44D 4NBDD 1ULJA 5KLIC 1O7PA 1FQTA 4HM0A 5HL4A 4QUPA 1JM1A 4HM3A 4AIVA 2DE5D 2ZYLA 1KYOE 3GZYA 3H1JE 4QCKA 2YFLA
chains in the Genus database with same CATH topology
3L72E 1SQXE 2HMNA 2NVGA 3GOBA 1O7WA 2B24A 5KLVE 3L71E 1VF5D 3GZXA 2QJYC 2YIUC 3L75E 4HJLA 4NB8D 2HMKA 3VCPA 1NYKA 3GKEA 2HMJA 1O7NA 2QJPC 3DQYA 1G8KB 2ZT9D 1PP9E 3GL0A 3H1HE 3AZCA 2XR8A 4HM7A 1ZRTE 4QDDA 4QDFA 1O7MA 4NBFD 1EZVE 4NBBD 4QDCA 3L74E 3CX5E 1SQQE 1L0LE 2A06E 4H13D 3VCAA 4NBHD 5AEWA 1NTKE 2QPZA 4PV1D 4HM5A 1SQVE 4PD4E 1UUVA 1SQBE 2E76D 2HMMA 2B1XA 4QURA 1VM9A 4HM1A 4P1CH 2E75D 3H1IE 1NDOA 3VMHD 2GBWA 3GCEA 3VMID 1EG9A 3CXHE 1P84E 3EQQA 2XRXA 4NBED 4HM6A 2E74D 2JZAA 1BE3E 2E4QA 2QJKC 2HMLA 1BCCE 3L70E 4P1BH 4HM8A 3EN1A 4OGQD 5CXMA 1VCKA 2D2CD 1UUWA 4EMJB 1O7GA 2BMOA 1NTZE 1NTME 2GBXA 3BCCE 2I7FA 2DE7D 4AAYB 2FYNC 2DE6D 1RFSA 4NBAD 2FYUE 3H1LE 3D89A 2BCCE 3GL2A 4QUQA 2CKFA 5BOKA 2YFIA 3VMGD 2NVEA 2IBZE 2XSOA 2BMQA 2YVJB 3GTEA 3CWBE 2BMRA 4NBCD 1L0NE 1PPJE 2XSHA 2Q3WA 2HMOA 4QDFB 1WQLA 1G8JB 1KB9E 1Q90C 1SJGA 4NBGD 2NWFA 3GTSA 4H0LD 4HM4A 1ULIA 2JO6A 4NB9D 3FOUA 5KKZC 1NU1E 2NVFA 2NUKA 2NUMA 4U3FE 3N0QA 2E4PA 3H1KE 3TGUE 5AEUA 1RIEA 4HKVA 3GB4A 3L73E 3C0DA 4HM2A 1O7HA 1SQPE 2YFJA 4H44D 4NBDD 1ULJA 5KLIC 1O7PA 1FQTA 4HM0A 5HL4A 4QUPA 1JM1A 4HM3A 4AIVA 2DE5D 2ZYLA 1KYOE 3GZYA 3H1JE 4QCKA 2YFLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L72 E;  1SQX E;  2HMN A;  2NVG A;  3GOB A;  1O7W A;  2B24 A;  5KLV E;  3L71 E;  1VF5 D;  3GZX A;  2QJY C;  2YIU C;  3L75 E;  4HJL A;  4NB8 D;  2HMK A;  3VCP A;  1NYK A;  3GKE A;  2HMJ A;  1O7N A;  2QJP C;  3DQY A;  1G8K B;  2ZT9 D;  1PP9 E;  3GL0 A;  3H1H E;  3AZC A;  2XR8 A;  4HM7 A;  1ZRT E;  4QDD A;  4QDF A;  1O7M A;  4NBF D;  1EZV E;  4NBB D;  4QDC A;  3L74 E;  3CX5 E;  1SQQ E;  1L0L E;  2A06 E;  4H13 D;  3VCA A;  4NBH D;  5AEW A;  1NTK E;  2QPZ A;  4PV1 D;  4HM5 A;  1SQV E;  4PD4 E;  1UUV A;  1SQB E;  2E76 D;  2HMM A;  2B1X A;  4QUR A;  1VM9 A;  4HM1 A;  4P1C H;  2E75 D;  3H1I E;  1NDO A;  3VMH D;  2GBW A;  3GCE A;  3VMI D;  1EG9 A;  3CXH E;  1P84 E;  3EQQ A;  2XRX A;  4NBE D;  4HM6 A;  2E74 D;  2JZA A;  1BE3 E;  2E4Q A;  2QJK C;  2HML A;  1BCC E;  3L70 E;  4P1B H;  4HM8 A;  3EN1 A;  4OGQ D;  5CXM A;  1VCK A;  2D2C D;  1UUW A;  4EMJ B;  1O7G A;  2BMO A;  1NTZ E;  1NTM E;  2GBX A;  3BCC E;  2I7F A;  2DE7 D;  4AAY B;  2FYN C;  2DE6 D;  1RFS A;  4NBA D;  2FYU E;  3H1L E;  3D89 A;  2BCC E;  3GL2 A;  4QUQ A;  2CKF A;  5BOK A;  2YFI A;  3VMG D;  2NVE A;  2IBZ E;  2XSO A;  2BMQ A;  2YVJ B;  3GTE A;  3CWB E;  2BMR A;  4NBC D;  1L0N E;  1PPJ E;  2XSH A;  2Q3W A;  2HMO A;  4QDF B;  1WQL A;  1G8J B;  1KB9 E;  1Q90 C;  1SJG A;  4NBG D;  2NWF A;  3GTS A;  4H0L D;  4HM4 A;  1ULI A;  2JO6 A;  4NB9 D;  3FOU A;  5KKZ C;  1NU1 E;  2NVF A;  2NUK A;  2NUM A;  4U3F E;  3N0Q A;  2E4P A;  3H1K E;  3TGU E;  5AEU A;  1RIE A;  4HKV A;  3GB4 A;  3L73 E;  3C0D A;  4HM2 A;  1O7H A;  1SQP E;  2YFJ A;  4H44 D;  4NBD D;  1ULJ A;  5KLI C;  1O7P A;  1FQT A;  4HM0 A;  5HL4 A;  4QUP A;  1JM1 A;  4HM3 A;  4AIV A;  2DE5 D;  2ZYL A;  1KYO E;  3GZY A;  3H1J E;  4QCK A;  2YFL A; 
#chains in the Genus database with same CATH topology
 3L72 E;  1SQX E;  2HMN A;  2NVG A;  3GOB A;  1O7W A;  2B24 A;  5KLV E;  3L71 E;  1VF5 D;  3GZX A;  2QJY C;  2YIU C;  3L75 E;  4HJL A;  4NB8 D;  2HMK A;  3VCP A;  1NYK A;  3GKE A;  2HMJ A;  1O7N A;  2QJP C;  3DQY A;  1G8K B;  2ZT9 D;  1PP9 E;  3GL0 A;  3H1H E;  3AZC A;  2XR8 A;  4HM7 A;  1ZRT E;  4QDD A;  4QDF A;  1O7M A;  4NBF D;  1EZV E;  4NBB D;  4QDC A;  3L74 E;  3CX5 E;  1SQQ E;  1L0L E;  2A06 E;  4H13 D;  3VCA A;  4NBH D;  5AEW A;  1NTK E;  2QPZ A;  4PV1 D;  4HM5 A;  1SQV E;  4PD4 E;  1UUV A;  1SQB E;  2E76 D;  2HMM A;  2B1X A;  4QUR A;  1VM9 A;  4HM1 A;  4P1C H;  2E75 D;  3H1I E;  1NDO A;  3VMH D;  2GBW A;  3GCE A;  3VMI D;  1EG9 A;  3CXH E;  1P84 E;  3EQQ A;  2XRX A;  4NBE D;  4HM6 A;  2E74 D;  2JZA A;  1BE3 E;  2E4Q A;  2QJK C;  2HML A;  1BCC E;  3L70 E;  4P1B H;  4HM8 A;  3EN1 A;  4OGQ D;  5CXM A;  1VCK A;  2D2C D;  1UUW A;  4EMJ B;  1O7G A;  2BMO A;  1NTZ E;  1NTM E;  2GBX A;  3BCC E;  2I7F A;  2DE7 D;  4AAY B;  2FYN C;  2DE6 D;  1RFS A;  4NBA D;  2FYU E;  3H1L E;  3D89 A;  2BCC E;  3GL2 A;  4QUQ A;  2CKF A;  5BOK A;  2YFI A;  3VMG D;  2NVE A;  2IBZ E;  2XSO A;  2BMQ A;  2YVJ B;  3GTE A;  3CWB E;  2BMR A;  4NBC D;  1L0N E;  1PPJ E;  2XSH A;  2Q3W A;  2HMO A;  4QDF B;  1WQL A;  1G8J B;  1KB9 E;  1Q90 C;  1SJG A;  4NBG D;  2NWF A;  3GTS A;  4H0L D;  4HM4 A;  1ULI A;  2JO6 A;  4NB9 D;  3FOU A;  5KKZ C;  1NU1 E;  2NVF A;  2NUK A;  2NUM A;  4U3F E;  3N0Q A;  2E4P A;  3H1K E;  3TGU E;  5AEU A;  1RIE A;  4HKV A;  3GB4 A;  3L73 E;  3C0D A;  4HM2 A;  1O7H A;  1SQP E;  2YFJ A;  4H44 D;  4NBD D;  1ULJ A;  5KLI C;  1O7P A;  1FQT A;  4HM0 A;  5HL4 A;  4QUP A;  1JM1 A;  4HM3 A;  4AIV A;  2DE5 D;  2ZYL A;  1KYO E;  3GZY A;  3H1J E;  4QCK A;  2YFL A; 
#chains in the Genus database with same CATH homology
 3L72 E;  1SQX E;  2HMN A;  2NVG A;  3GOB A;  1O7W A;  2B24 A;  5KLV E;  3L71 E;  1VF5 D;  3GZX A;  2QJY C;  2YIU C;  3L75 E;  4HJL A;  4NB8 D;  2HMK A;  3VCP A;  1NYK A;  3GKE A;  2HMJ A;  1O7N A;  2QJP C;  3DQY A;  1G8K B;  2ZT9 D;  1PP9 E;  3GL0 A;  3H1H E;  3AZC A;  2XR8 A;  4HM7 A;  1ZRT E;  4QDD A;  4QDF A;  1O7M A;  4NBF D;  1EZV E;  4NBB D;  4QDC A;  3L74 E;  3CX5 E;  1SQQ E;  1L0L E;  2A06 E;  4H13 D;  3VCA A;  4NBH D;  5AEW A;  1NTK E;  2QPZ A;  4PV1 D;  4HM5 A;  1SQV E;  4PD4 E;  1UUV A;  1SQB E;  2E76 D;  2HMM A;  2B1X A;  4QUR A;  1VM9 A;  4HM1 A;  4P1C H;  2E75 D;  3H1I E;  1NDO A;  3VMH D;  2GBW A;  3GCE A;  3VMI D;  1EG9 A;  3CXH E;  1P84 E;  3EQQ A;  2XRX A;  4NBE D;  4HM6 A;  2E74 D;  2JZA A;  1BE3 E;  2E4Q A;  2QJK C;  2HML A;  1BCC E;  3L70 E;  4P1B H;  4HM8 A;  3EN1 A;  4OGQ D;  5CXM A;  1VCK A;  2D2C D;  1UUW A;  4EMJ B;  1O7G A;  2BMO A;  1NTZ E;  1NTM E;  2GBX A;  3BCC E;  2I7F A;  2DE7 D;  4AAY B;  2FYN C;  2DE6 D;  1RFS A;  4NBA D;  2FYU E;  3H1L E;  3D89 A;  2BCC E;  3GL2 A;  4QUQ A;  2CKF A;  5BOK A;  2YFI A;  3VMG D;  2NVE A;  2IBZ E;  2XSO A;  2BMQ A;  2YVJ B;  3GTE A;  3CWB E;  2BMR A;  4NBC D;  1L0N E;  1PPJ E;  2XSH A;  2Q3W A;  2HMO A;  4QDF B;  1WQL A;  1G8J B;  1KB9 E;  1Q90 C;  1SJG A;  4NBG D;  2NWF A;  3GTS A;  4H0L D;  4HM4 A;  1ULI A;  2JO6 A;  4NB9 D;  3FOU A;  5KKZ C;  1NU1 E;  2NVF A;  2NUK A;  2NUM A;  4U3F E;  3N0Q A;  2E4P A;  3H1K E;  3TGU E;  5AEU A;  1RIE A;  4HKV A;  3GB4 A;  3L73 E;  3C0D A;  4HM2 A;  1O7H A;  1SQP E;  2YFJ A;  4H44 D;  4NBD D;  1ULJ A;  5KLI C;  1O7P A;  1FQT A;  4HM0 A;  5HL4 A;  4QUP A;  1JM1 A;  4HM3 A;  4AIV A;  2DE5 D;  2ZYL A;  1KYO E;  3GZY A;  3H1J E;  4QCK A;  2YFL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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