4NBDD

Carbazole-bound oxygenase with phe275 replaced by trp and ferredoxin complex of carbazole 1,9a-dioxygenase (form2)
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
103
structure length
103
Chain Sequence
b'IWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPASSPCTVPLGVFEVEVKEGEVYVAGEK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Terminal oxygenase component of carbazole
publication title Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Non-heme Iron Oxygenase, Carbazole 1,9a-Dioxygenase
pubmed doi rcsb
source organism Janthinobacterium
molecule tags Oxidoreductase
total genus 17
structure length 103
sequence length 103
chains with identical sequence E
ec nomenclature ec 1.14.12.22: Carbazole 1,9a-dioxygenase.
pdb deposition date 2013-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4nbdD00
4HM2A 2DE5D 4HM4A 1SJGA 2ZT9D 1O7GA 2JO6A 4EMJB 4AIVA 2GBWA 3C0DA 1NTME 3TGUE 3GTEA 1VCKA 1BE3E 2XSHA 3EQQA 1PPJE 3H1IE 2QJYC 4HJLA 3GL0A 3GB4A 3N0QA 4QDDA 2E74D 3GZXA 5KLIC 1SQXE 1SQQE 1EG9A 2JZAA 4AAYB 1ULIA 3VMGD 1EZVE 1FQTA 1ULJA 3L75E 4HM3A 3VMID 3D89A 5AEUA 4NBGD 4NBDD 2QJPC 2XRXA 1VF5D 3GOBA 1RIEA 1RFSA 5AEWA 3L73E 1G8JB 3GTSA 4NBAD 2QPZA 2Q3WA 4P1BH 2HMNA 3VCAA 1JM1A 1UUVA 1L0LE 2DE7D 2HMLA 2YFIA 4QCKA 1Q90C 2E4QA 4OGQD 1UUWA 4NBED 4HM0A 2NVEA 2XR8A 1SQVE 2QJKC 2IBZE 2YVJB 5BOKA 1NTKE 2YIUC 4PD4E 1SQBE 2CKFA 3DQYA 4NBCD 2BMOA 4QDCA 1O7HA 4HM1A 2B24A 3EN1A 4H0LD 1O7MA 1NDOA 3L71E 4NBFD 2B1XA 4HM7A 4U3FE 3CX5E 4H44D 1NTZE 4NB8D 2HMJA 3H1LE 4NBBD 4HKVA 2GBXA 2E4PA 4NBHD 4PV1D 2YFJA 2HMMA 1BCCE 2D2CD 2FYNC 2ZYLA 4P1CH 3GL2A 3H1KE 1KYOE 4QDFB 1VM9A 1NU1E 3GKEA 4QUQA 1NYKA 1WQLA 3FOUA 3VMHD 3H1HE 2BMQA 4H13D 1KB9E 4NB9D 3L70E 2XSOA 2E76D 2NVFA 2A06E 3L72E 5HL4A 5CXMA 4HM5A 2DE6D 2YFLA 4QURA 2BMRA 4HM8A 2HMKA 3H1JE 2I7FA 1L0NE 1ZRTE 3GZYA 1O7NA 3GCEA 2FYUE 5KKZC 1P84E 1G8KB 2HMOA 2NUMA 3CWBE 4HM6A 4QUPA 1O7WA 3AZCA 2NVGA 3BCCE 2BCCE 5KLVE 1O7PA 3L74E 1SQPE 3VCPA 2NUKA 3CXHE 2E75D 1PP9E 2NWFA 4QDFA
chains in the Genus database with same CATH superfamily
4HM2A 2DE5D 4HM4A 1SJGA 2ZT9D 1O7GA 2JO6A 4EMJB 4AIVA 2GBWA 3C0DA 1NTME 3TGUE 3GTEA 1VCKA 1BE3E 2XSHA 3EQQA 1PPJE 3H1IE 2QJYC 4HJLA 3GL0A 3GB4A 3N0QA 4QDDA 2E74D 3GZXA 5KLIC 1SQXE 1SQQE 1EG9A 2JZAA 4AAYB 1ULIA 3VMGD 1EZVE 1FQTA 1ULJA 3L75E 4HM3A 3VMID 3D89A 5AEUA 4NBGD 4NBDD 2QJPC 2XRXA 1VF5D 3GOBA 1RIEA 1RFSA 5AEWA 3L73E 1G8JB 3GTSA 4NBAD 2QPZA 2Q3WA 4P1BH 2HMNA 3VCAA 1JM1A 1UUVA 1L0LE 2DE7D 2HMLA 2YFIA 4QCKA 1Q90C 2E4QA 4OGQD 1UUWA 4NBED 4HM0A 2NVEA 2XR8A 1SQVE 2QJKC 2IBZE 2YVJB 5BOKA 1NTKE 2YIUC 4PD4E 1SQBE 2CKFA 3DQYA 4NBCD 2BMOA 4QDCA 1O7HA 4HM1A 2B24A 3EN1A 4H0LD 1O7MA 1NDOA 3L71E 4NBFD 2B1XA 4HM7A 4U3FE 3CX5E 4H44D 1NTZE 4NB8D 2HMJA 3H1LE 4NBBD 4HKVA 2GBXA 2E4PA 4NBHD 4PV1D 2YFJA 2HMMA 1BCCE 2D2CD 2FYNC 2ZYLA 4P1CH 3GL2A 3H1KE 1KYOE 4QDFB 1VM9A 1NU1E 3GKEA 4QUQA 1NYKA 1WQLA 3FOUA 3VMHD 3H1HE 2BMQA 4H13D 1KB9E 4NB9D 3L70E 2XSOA 2E76D 2NVFA 2A06E 3L72E 5HL4A 5CXMA 4HM5A 2DE6D 2YFLA 4QURA 2BMRA 4HM8A 2HMKA 3H1JE 2I7FA 1L0NE 1ZRTE 3GZYA 1O7NA 3GCEA 2FYUE 5KKZC 1P84E 1G8KB 2HMOA 2NUMA 3CWBE 4HM6A 4QUPA 1O7WA 3AZCA 2NVGA 3BCCE 2BCCE 5KLVE 1O7PA 3L74E 1SQPE 3VCPA 2NUKA 3CXHE 2E75D 1PP9E 2NWFA 4QDFA
chains in the Genus database with same CATH topology
4HM2A 2DE5D 4HM4A 1SJGA 2ZT9D 1O7GA 2JO6A 4EMJB 4AIVA 2GBWA 3C0DA 1NTME 3TGUE 3GTEA 1VCKA 1BE3E 2XSHA 3EQQA 1PPJE 3H1IE 2QJYC 4HJLA 3GL0A 3GB4A 3N0QA 4QDDA 2E74D 3GZXA 5KLIC 1SQXE 1SQQE 1EG9A 2JZAA 4AAYB 1ULIA 3VMGD 1EZVE 1FQTA 1ULJA 3L75E 4HM3A 3VMID 3D89A 5AEUA 4NBGD 4NBDD 2QJPC 2XRXA 1VF5D 3GOBA 1RIEA 1RFSA 5AEWA 3L73E 1G8JB 3GTSA 4NBAD 2QPZA 2Q3WA 4P1BH 2HMNA 3VCAA 1JM1A 1UUVA 1L0LE 2DE7D 2HMLA 2YFIA 4QCKA 1Q90C 2E4QA 4OGQD 1UUWA 4NBED 4HM0A 2NVEA 2XR8A 1SQVE 2QJKC 2IBZE 2YVJB 5BOKA 1NTKE 2YIUC 4PD4E 1SQBE 2CKFA 3DQYA 4NBCD 2BMOA 4QDCA 1O7HA 4HM1A 2B24A 3EN1A 4H0LD 1O7MA 1NDOA 3L71E 4NBFD 2B1XA 4HM7A 4U3FE 3CX5E 4H44D 1NTZE 4NB8D 2HMJA 3H1LE 4NBBD 4HKVA 2GBXA 2E4PA 4NBHD 4PV1D 2YFJA 2HMMA 1BCCE 2D2CD 2FYNC 2ZYLA 4P1CH 3GL2A 3H1KE 1KYOE 4QDFB 1VM9A 1NU1E 3GKEA 4QUQA 1NYKA 1WQLA 3FOUA 3VMHD 3H1HE 2BMQA 4H13D 1KB9E 4NB9D 3L70E 2XSOA 2E76D 2NVFA 2A06E 3L72E 5HL4A 5CXMA 4HM5A 2DE6D 2YFLA 4QURA 2BMRA 4HM8A 2HMKA 3H1JE 2I7FA 1L0NE 1ZRTE 3GZYA 1O7NA 3GCEA 2FYUE 5KKZC 1P84E 1G8KB 2HMOA 2NUMA 3CWBE 4HM6A 4QUPA 1O7WA 3AZCA 2NVGA 3BCCE 2BCCE 5KLVE 1O7PA 3L74E 1SQPE 3VCPA 2NUKA 3CXHE 2E75D 1PP9E 2NWFA 4QDFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HM2 A;  2DE5 D;  4HM4 A;  1SJG A;  2ZT9 D;  1O7G A;  2JO6 A;  4EMJ B;  4AIV A;  2GBW A;  3C0D A;  1NTM E;  3TGU E;  3GTE A;  1VCK A;  1BE3 E;  2XSH A;  3EQQ A;  1PPJ E;  3H1I E;  2QJY C;  4HJL A;  3GL0 A;  3GB4 A;  3N0Q A;  4QDD A;  2E74 D;  3GZX A;  5KLI C;  1SQX E;  1SQQ E;  1EG9 A;  2JZA A;  4AAY B;  1ULI A;  3VMG D;  1EZV E;  1FQT A;  1ULJ A;  3L75 E;  4HM3 A;  3VMI D;  3D89 A;  5AEU A;  4NBG D;  4NBD D;  2QJP C;  2XRX A;  1VF5 D;  3GOB A;  1RIE A;  1RFS A;  5AEW A;  3L73 E;  1G8J B;  3GTS A;  4NBA D;  2QPZ A;  2Q3W A;  4P1B H;  2HMN A;  3VCA A;  1JM1 A;  1UUV A;  1L0L E;  2DE7 D;  2HML A;  2YFI A;  4QCK A;  1Q90 C;  2E4Q A;  4OGQ D;  1UUW A;  4NBE D;  4HM0 A;  2NVE A;  2XR8 A;  1SQV E;  2QJK C;  2IBZ E;  2YVJ B;  5BOK A;  1NTK E;  2YIU C;  4PD4 E;  1SQB E;  2CKF A;  3DQY A;  4NBC D;  2BMO A;  4QDC A;  1O7H A;  4HM1 A;  2B24 A;  3EN1 A;  4H0L D;  1O7M A;  1NDO A;  3L71 E;  4NBF D;  2B1X A;  4HM7 A;  4U3F E;  3CX5 E;  4H44 D;  1NTZ E;  4NB8 D;  2HMJ A;  3H1L E;  4NBB D;  4HKV A;  2GBX A;  2E4P A;  4NBH D;  4PV1 D;  2YFJ A;  2HMM A;  1BCC E;  2D2C D;  2FYN C;  2ZYL A;  4P1C H;  3GL2 A;  3H1K E;  1KYO E;  4QDF B;  1VM9 A;  1NU1 E;  3GKE A;  4QUQ A;  1NYK A;  1WQL A;  3FOU A;  3VMH D;  3H1H E;  2BMQ A;  4H13 D;  1KB9 E;  4NB9 D;  3L70 E;  2XSO A;  2E76 D;  2NVF A;  2A06 E;  3L72 E;  5HL4 A;  5CXM A;  4HM5 A;  2DE6 D;  2YFL A;  4QUR A;  2BMR A;  4HM8 A;  2HMK A;  3H1J E;  2I7F A;  1L0N E;  1ZRT E;  3GZY A;  1O7N A;  3GCE A;  2FYU E;  5KKZ C;  1P84 E;  1G8K B;  2HMO A;  2NUM A;  3CWB E;  4HM6 A;  4QUP A;  1O7W A;  3AZC A;  2NVG A;  3BCC E;  2BCC E;  5KLV E;  1O7P A;  3L74 E;  1SQP E;  3VCP A;  2NUK A;  3CXH E;  2E75 D;  1PP9 E;  2NWF A;  4QDF A; 
#chains in the Genus database with same CATH topology
 4HM2 A;  2DE5 D;  4HM4 A;  1SJG A;  2ZT9 D;  1O7G A;  2JO6 A;  4EMJ B;  4AIV A;  2GBW A;  3C0D A;  1NTM E;  3TGU E;  3GTE A;  1VCK A;  1BE3 E;  2XSH A;  3EQQ A;  1PPJ E;  3H1I E;  2QJY C;  4HJL A;  3GL0 A;  3GB4 A;  3N0Q A;  4QDD A;  2E74 D;  3GZX A;  5KLI C;  1SQX E;  1SQQ E;  1EG9 A;  2JZA A;  4AAY B;  1ULI A;  3VMG D;  1EZV E;  1FQT A;  1ULJ A;  3L75 E;  4HM3 A;  3VMI D;  3D89 A;  5AEU A;  4NBG D;  4NBD D;  2QJP C;  2XRX A;  1VF5 D;  3GOB A;  1RIE A;  1RFS A;  5AEW A;  3L73 E;  1G8J B;  3GTS A;  4NBA D;  2QPZ A;  2Q3W A;  4P1B H;  2HMN A;  3VCA A;  1JM1 A;  1UUV A;  1L0L E;  2DE7 D;  2HML A;  2YFI A;  4QCK A;  1Q90 C;  2E4Q A;  4OGQ D;  1UUW A;  4NBE D;  4HM0 A;  2NVE A;  2XR8 A;  1SQV E;  2QJK C;  2IBZ E;  2YVJ B;  5BOK A;  1NTK E;  2YIU C;  4PD4 E;  1SQB E;  2CKF A;  3DQY A;  4NBC D;  2BMO A;  4QDC A;  1O7H A;  4HM1 A;  2B24 A;  3EN1 A;  4H0L D;  1O7M A;  1NDO A;  3L71 E;  4NBF D;  2B1X A;  4HM7 A;  4U3F E;  3CX5 E;  4H44 D;  1NTZ E;  4NB8 D;  2HMJ A;  3H1L E;  4NBB D;  4HKV A;  2GBX A;  2E4P A;  4NBH D;  4PV1 D;  2YFJ A;  2HMM A;  1BCC E;  2D2C D;  2FYN C;  2ZYL A;  4P1C H;  3GL2 A;  3H1K E;  1KYO E;  4QDF B;  1VM9 A;  1NU1 E;  3GKE A;  4QUQ A;  1NYK A;  1WQL A;  3FOU A;  3VMH D;  3H1H E;  2BMQ A;  4H13 D;  1KB9 E;  4NB9 D;  3L70 E;  2XSO A;  2E76 D;  2NVF A;  2A06 E;  3L72 E;  5HL4 A;  5CXM A;  4HM5 A;  2DE6 D;  2YFL A;  4QUR A;  2BMR A;  4HM8 A;  2HMK A;  3H1J E;  2I7F A;  1L0N E;  1ZRT E;  3GZY A;  1O7N A;  3GCE A;  2FYU E;  5KKZ C;  1P84 E;  1G8K B;  2HMO A;  2NUM A;  3CWB E;  4HM6 A;  4QUP A;  1O7W A;  3AZC A;  2NVG A;  3BCC E;  2BCC E;  5KLV E;  1O7P A;  3L74 E;  1SQP E;  3VCP A;  2NUK A;  3CXH E;  2E75 D;  1PP9 E;  2NWF A;  4QDF A; 
#chains in the Genus database with same CATH homology
 4HM2 A;  2DE5 D;  4HM4 A;  1SJG A;  2ZT9 D;  1O7G A;  2JO6 A;  4EMJ B;  4AIV A;  2GBW A;  3C0D A;  1NTM E;  3TGU E;  3GTE A;  1VCK A;  1BE3 E;  2XSH A;  3EQQ A;  1PPJ E;  3H1I E;  2QJY C;  4HJL A;  3GL0 A;  3GB4 A;  3N0Q A;  4QDD A;  2E74 D;  3GZX A;  5KLI C;  1SQX E;  1SQQ E;  1EG9 A;  2JZA A;  4AAY B;  1ULI A;  3VMG D;  1EZV E;  1FQT A;  1ULJ A;  3L75 E;  4HM3 A;  3VMI D;  3D89 A;  5AEU A;  4NBG D;  4NBD D;  2QJP C;  2XRX A;  1VF5 D;  3GOB A;  1RIE A;  1RFS A;  5AEW A;  3L73 E;  1G8J B;  3GTS A;  4NBA D;  2QPZ A;  2Q3W A;  4P1B H;  2HMN A;  3VCA A;  1JM1 A;  1UUV A;  1L0L E;  2DE7 D;  2HML A;  2YFI A;  4QCK A;  1Q90 C;  2E4Q A;  4OGQ D;  1UUW A;  4NBE D;  4HM0 A;  2NVE A;  2XR8 A;  1SQV E;  2QJK C;  2IBZ E;  2YVJ B;  5BOK A;  1NTK E;  2YIU C;  4PD4 E;  1SQB E;  2CKF A;  3DQY A;  4NBC D;  2BMO A;  4QDC A;  1O7H A;  4HM1 A;  2B24 A;  3EN1 A;  4H0L D;  1O7M A;  1NDO A;  3L71 E;  4NBF D;  2B1X A;  4HM7 A;  4U3F E;  3CX5 E;  4H44 D;  1NTZ E;  4NB8 D;  2HMJ A;  3H1L E;  4NBB D;  4HKV A;  2GBX A;  2E4P A;  4NBH D;  4PV1 D;  2YFJ A;  2HMM A;  1BCC E;  2D2C D;  2FYN C;  2ZYL A;  4P1C H;  3GL2 A;  3H1K E;  1KYO E;  4QDF B;  1VM9 A;  1NU1 E;  3GKE A;  4QUQ A;  1NYK A;  1WQL A;  3FOU A;  3VMH D;  3H1H E;  2BMQ A;  4H13 D;  1KB9 E;  4NB9 D;  3L70 E;  2XSO A;  2E76 D;  2NVF A;  2A06 E;  3L72 E;  5HL4 A;  5CXM A;  4HM5 A;  2DE6 D;  2YFL A;  4QUR A;  2BMR A;  4HM8 A;  2HMK A;  3H1J E;  2I7F A;  1L0N E;  1ZRT E;  3GZY A;  1O7N A;  3GCE A;  2FYU E;  5KKZ C;  1P84 E;  1G8K B;  2HMO A;  2NUM A;  3CWB E;  4HM6 A;  4QUP A;  1O7W A;  3AZC A;  2NVG A;  3BCC E;  2BCC E;  5KLV E;  1O7P A;  3L74 E;  1SQP E;  3VCP A;  2NUK A;  3CXH E;  2E75 D;  1PP9 E;  2NWF A;  4QDF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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