1Q90C

Structure of the cytochrome b6f (plastohydroquinone : plastocyanin oxidoreductase) from chlamydomonas reinhardtii
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
127
structure length
126
Chain Sequence
QAAKDALGNDIKAGEWLKTHLAGDRSLSQGLKGDPTYLIVTADSTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDVAEGLVTFSTWTETDFRTGLEPWWA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Photosynthesis
molecule keywords Apocytochrome f
publication title An Atypical Haem in the Cytochrome B6F Complex
pubmed doi rcsb
source organism Chlamydomonas reinhardtii
total genus 22
structure length 126
sequence length 127
ec nomenclature ec 7.1.1.6: Plastoquinol--plastocyanin reductase.
pdb deposition date 2003-08-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1q90C00
2ZYLA 3GTSA 3EQQA 3VCPA 1BE3E 2XR8A 4QUQA 2E76D 2YIUC 5BOKA 1VCKA 3D89A 4HJLA 1UUWA 2YFIA 5KKZC 2CKFA 4U3FE 2NVGA 2E74D 1L0LE 2GBXA 3CX5E 1NTZE 1NYKA 2HMLA 3GL2A 4NBDD 1FQTA 5AEUA 4NBGD 1NU1E 3BCCE 4HM5A 2E75D 3GZYA 1O7MA 1ULJA 2FYUE 2Q3WA 4P1CH 1RFSA 2NUKA 2YFJA 2A06E 3H1LE 1L0NE 1SQXE 2BMRA 2E4QA 2QJKC 1KYOE 2QJYC 3L73E 2HMNA 4QDFB 3L70E 4HKVA 2YFLA 4P1BH 1SQBE 3H1KE 1PP9E 2DE5D 4HM2A 2I7FA 3VMHD 2XSHA 1ZRTE 5AEWA 4AIVA 4NBAD 1BCCE 4H0LD 1G8KB 2JZAA 2BMOA 3GCEA 1JM1A 4HM4A 1RIEA 3CXHE 2BCCE 4PD4E 1O7HA 4QDFA 2NVEA 1G8JB 1VM9A 1NTKE 4QCKA 4QURA 3EN1A 1O7NA 4HM7A 3L71E 4HM8A 1VF5D 3H1JE 2B24A 3L75E 2HMKA 4NBED 2DE7D 2DE6D 1EG9A 1ULIA 5CXMA 1P84E 1NDOA 1SQVE 1O7WA 2ZT9D 3CWBE 5HL4A 2HMOA 3GOBA 2GBWA 2B1XA 4NBHD 1KB9E 2IBZE 3TGUE 4AAYB 4EMJB 4NBFD 1O7GA 1SJGA 2NWFA 1WQLA 3VMGD 3GL0A 3GTEA 2NUMA 4QUPA 3VCAA 2HMMA 2XRXA 2HMJA 4H44D 5KLVE 1O7PA 3AZCA 2JO6A 2QPZA 1UUVA 3GB4A 4QDDA 4NBCD 2NVFA 5KLIC 2XSOA 1NTME 3GZXA 2YVJB 3H1HE 1PPJE 3H1IE 1Q90C 2QJPC 4HM3A 3C0DA 4OGQD 4HM1A 3DQYA 4HM6A 4PV1D 3L74E 1SQPE 1EZVE 4QDCA 2BMQA 4H13D 3GKEA 4NB9D 4HM0A 4NB8D 2FYNC 3VMID 3FOUA 2E4PA 3N0QA 4NBBD 2D2CD 1SQQE 3L72E
chains in the Genus database with same CATH superfamily
2ZYLA 3GTSA 3EQQA 3VCPA 1BE3E 2XR8A 4QUQA 2E76D 2YIUC 5BOKA 1VCKA 3D89A 4HJLA 1UUWA 2YFIA 5KKZC 2CKFA 4U3FE 2NVGA 2E74D 1L0LE 2GBXA 3CX5E 1NTZE 1NYKA 2HMLA 3GL2A 4NBDD 1FQTA 5AEUA 4NBGD 1NU1E 3BCCE 4HM5A 2E75D 3GZYA 1O7MA 1ULJA 2FYUE 2Q3WA 4P1CH 1RFSA 2NUKA 2YFJA 2A06E 3H1LE 1L0NE 1SQXE 2BMRA 2E4QA 2QJKC 1KYOE 2QJYC 3L73E 2HMNA 4QDFB 3L70E 4HKVA 2YFLA 4P1BH 1SQBE 3H1KE 1PP9E 2DE5D 4HM2A 2I7FA 3VMHD 2XSHA 1ZRTE 5AEWA 4AIVA 4NBAD 1BCCE 4H0LD 1G8KB 2JZAA 2BMOA 3GCEA 1JM1A 4HM4A 1RIEA 3CXHE 2BCCE 4PD4E 1O7HA 4QDFA 2NVEA 1G8JB 1VM9A 1NTKE 4QCKA 4QURA 3EN1A 1O7NA 4HM7A 3L71E 4HM8A 1VF5D 3H1JE 2B24A 3L75E 2HMKA 4NBED 2DE7D 2DE6D 1EG9A 1ULIA 5CXMA 1P84E 1NDOA 1SQVE 1O7WA 2ZT9D 3CWBE 5HL4A 2HMOA 3GOBA 2GBWA 2B1XA 4NBHD 1KB9E 2IBZE 3TGUE 4AAYB 4EMJB 4NBFD 1O7GA 1SJGA 2NWFA 1WQLA 3VMGD 3GL0A 3GTEA 2NUMA 4QUPA 3VCAA 2HMMA 2XRXA 2HMJA 4H44D 5KLVE 1O7PA 3AZCA 2JO6A 2QPZA 1UUVA 3GB4A 4QDDA 4NBCD 2NVFA 5KLIC 2XSOA 1NTME 3GZXA 2YVJB 3H1HE 1PPJE 3H1IE 1Q90C 2QJPC 4HM3A 3C0DA 4OGQD 4HM1A 3DQYA 4HM6A 4PV1D 3L74E 1SQPE 1EZVE 4QDCA 2BMQA 4H13D 3GKEA 4NB9D 4HM0A 4NB8D 2FYNC 3VMID 3FOUA 2E4PA 3N0QA 4NBBD 2D2CD 1SQQE 3L72E
chains in the Genus database with same CATH topology
2ZYLA 3GTSA 3EQQA 3VCPA 1BE3E 2XR8A 4QUQA 2E76D 2YIUC 5BOKA 1VCKA 3D89A 4HJLA 1UUWA 2YFIA 5KKZC 2CKFA 4U3FE 2NVGA 2E74D 1L0LE 2GBXA 3CX5E 1NTZE 1NYKA 2HMLA 3GL2A 4NBDD 1FQTA 5AEUA 4NBGD 1NU1E 3BCCE 4HM5A 2E75D 3GZYA 1O7MA 1ULJA 2FYUE 2Q3WA 4P1CH 1RFSA 2NUKA 2YFJA 2A06E 3H1LE 1L0NE 1SQXE 2BMRA 2E4QA 2QJKC 1KYOE 2QJYC 3L73E 2HMNA 4QDFB 3L70E 4HKVA 2YFLA 4P1BH 1SQBE 3H1KE 1PP9E 2DE5D 4HM2A 2I7FA 3VMHD 2XSHA 1ZRTE 5AEWA 4AIVA 4NBAD 1BCCE 4H0LD 1G8KB 2JZAA 2BMOA 3GCEA 1JM1A 4HM4A 1RIEA 3CXHE 2BCCE 4PD4E 1O7HA 4QDFA 2NVEA 1G8JB 1VM9A 1NTKE 4QCKA 4QURA 3EN1A 1O7NA 4HM7A 3L71E 4HM8A 1VF5D 3H1JE 2B24A 3L75E 2HMKA 4NBED 2DE7D 2DE6D 1EG9A 1ULIA 5CXMA 1P84E 1NDOA 1SQVE 1O7WA 2ZT9D 3CWBE 5HL4A 2HMOA 3GOBA 2GBWA 2B1XA 4NBHD 1KB9E 2IBZE 3TGUE 4AAYB 4EMJB 4NBFD 1O7GA 1SJGA 2NWFA 1WQLA 3VMGD 3GL0A 3GTEA 2NUMA 4QUPA 3VCAA 2HMMA 2XRXA 2HMJA 4H44D 5KLVE 1O7PA 3AZCA 2JO6A 2QPZA 1UUVA 3GB4A 4QDDA 4NBCD 2NVFA 5KLIC 2XSOA 1NTME 3GZXA 2YVJB 3H1HE 1PPJE 3H1IE 1Q90C 2QJPC 4HM3A 3C0DA 4OGQD 4HM1A 3DQYA 4HM6A 4PV1D 3L74E 1SQPE 1EZVE 4QDCA 2BMQA 4H13D 3GKEA 4NB9D 4HM0A 4NB8D 2FYNC 3VMID 3FOUA 2E4PA 3N0QA 4NBBD 2D2CD 1SQQE 3L72E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZYL A;  3GTS A;  3EQQ A;  3VCP A;  1BE3 E;  2XR8 A;  4QUQ A;  2E76 D;  2YIU C;  5BOK A;  1VCK A;  3D89 A;  4HJL A;  1UUW A;  2YFI A;  5KKZ C;  2CKF A;  4U3F E;  2NVG A;  2E74 D;  1L0L E;  2GBX A;  3CX5 E;  1NTZ E;  1NYK A;  2HML A;  3GL2 A;  4NBD D;  1FQT A;  5AEU A;  4NBG D;  1NU1 E;  3BCC E;  4HM5 A;  2E75 D;  3GZY A;  1O7M A;  1ULJ A;  2FYU E;  2Q3W A;  4P1C H;  1RFS A;  2NUK A;  2YFJ A;  2A06 E;  3H1L E;  1L0N E;  1SQX E;  2BMR A;  2E4Q A;  2QJK C;  1KYO E;  2QJY C;  3L73 E;  2HMN A;  4QDF B;  3L70 E;  4HKV A;  2YFL A;  4P1B H;  1SQB E;  3H1K E;  1PP9 E;  2DE5 D;  4HM2 A;  2I7F A;  3VMH D;  2XSH A;  1ZRT E;  5AEW A;  4AIV A;  4NBA D;  1BCC E;  4H0L D;  1G8K B;  2JZA A;  2BMO A;  3GCE A;  1JM1 A;  4HM4 A;  1RIE A;  3CXH E;  2BCC E;  4PD4 E;  1O7H A;  4QDF A;  2NVE A;  1G8J B;  1VM9 A;  1NTK E;  4QCK A;  4QUR A;  3EN1 A;  1O7N A;  4HM7 A;  3L71 E;  4HM8 A;  1VF5 D;  3H1J E;  2B24 A;  3L75 E;  2HMK A;  4NBE D;  2DE7 D;  2DE6 D;  1EG9 A;  1ULI A;  5CXM A;  1P84 E;  1NDO A;  1SQV E;  1O7W A;  2ZT9 D;  3CWB E;  5HL4 A;  2HMO A;  3GOB A;  2GBW A;  2B1X A;  4NBH D;  1KB9 E;  2IBZ E;  3TGU E;  4AAY B;  4EMJ B;  4NBF D;  1O7G A;  1SJG A;  2NWF A;  1WQL A;  3VMG D;  3GL0 A;  3GTE A;  2NUM A;  4QUP A;  3VCA A;  2HMM A;  2XRX A;  2HMJ A;  4H44 D;  5KLV E;  1O7P A;  3AZC A;  2JO6 A;  2QPZ A;  1UUV A;  3GB4 A;  4QDD A;  4NBC D;  2NVF A;  5KLI C;  2XSO A;  1NTM E;  3GZX A;  2YVJ B;  3H1H E;  1PPJ E;  3H1I E;  1Q90 C;  2QJP C;  4HM3 A;  3C0D A;  4OGQ D;  4HM1 A;  3DQY A;  4HM6 A;  4PV1 D;  3L74 E;  1SQP E;  1EZV E;  4QDC A;  2BMQ A;  4H13 D;  3GKE A;  4NB9 D;  4HM0 A;  4NB8 D;  2FYN C;  3VMI D;  3FOU A;  2E4P A;  3N0Q A;  4NBB D;  2D2C D;  1SQQ E;  3L72 E; 
#chains in the Genus database with same CATH topology
 2ZYL A;  3GTS A;  3EQQ A;  3VCP A;  1BE3 E;  2XR8 A;  4QUQ A;  2E76 D;  2YIU C;  5BOK A;  1VCK A;  3D89 A;  4HJL A;  1UUW A;  2YFI A;  5KKZ C;  2CKF A;  4U3F E;  2NVG A;  2E74 D;  1L0L E;  2GBX A;  3CX5 E;  1NTZ E;  1NYK A;  2HML A;  3GL2 A;  4NBD D;  1FQT A;  5AEU A;  4NBG D;  1NU1 E;  3BCC E;  4HM5 A;  2E75 D;  3GZY A;  1O7M A;  1ULJ A;  2FYU E;  2Q3W A;  4P1C H;  1RFS A;  2NUK A;  2YFJ A;  2A06 E;  3H1L E;  1L0N E;  1SQX E;  2BMR A;  2E4Q A;  2QJK C;  1KYO E;  2QJY C;  3L73 E;  2HMN A;  4QDF B;  3L70 E;  4HKV A;  2YFL A;  4P1B H;  1SQB E;  3H1K E;  1PP9 E;  2DE5 D;  4HM2 A;  2I7F A;  3VMH D;  2XSH A;  1ZRT E;  5AEW A;  4AIV A;  4NBA D;  1BCC E;  4H0L D;  1G8K B;  2JZA A;  2BMO A;  3GCE A;  1JM1 A;  4HM4 A;  1RIE A;  3CXH E;  2BCC E;  4PD4 E;  1O7H A;  4QDF A;  2NVE A;  1G8J B;  1VM9 A;  1NTK E;  4QCK A;  4QUR A;  3EN1 A;  1O7N A;  4HM7 A;  3L71 E;  4HM8 A;  1VF5 D;  3H1J E;  2B24 A;  3L75 E;  2HMK A;  4NBE D;  2DE7 D;  2DE6 D;  1EG9 A;  1ULI A;  5CXM A;  1P84 E;  1NDO A;  1SQV E;  1O7W A;  2ZT9 D;  3CWB E;  5HL4 A;  2HMO A;  3GOB A;  2GBW A;  2B1X A;  4NBH D;  1KB9 E;  2IBZ E;  3TGU E;  4AAY B;  4EMJ B;  4NBF D;  1O7G A;  1SJG A;  2NWF A;  1WQL A;  3VMG D;  3GL0 A;  3GTE A;  2NUM A;  4QUP A;  3VCA A;  2HMM A;  2XRX A;  2HMJ A;  4H44 D;  5KLV E;  1O7P A;  3AZC A;  2JO6 A;  2QPZ A;  1UUV A;  3GB4 A;  4QDD A;  4NBC D;  2NVF A;  5KLI C;  2XSO A;  1NTM E;  3GZX A;  2YVJ B;  3H1H E;  1PPJ E;  3H1I E;  1Q90 C;  2QJP C;  4HM3 A;  3C0D A;  4OGQ D;  4HM1 A;  3DQY A;  4HM6 A;  4PV1 D;  3L74 E;  1SQP E;  1EZV E;  4QDC A;  2BMQ A;  4H13 D;  3GKE A;  4NB9 D;  4HM0 A;  4NB8 D;  2FYN C;  3VMI D;  3FOU A;  2E4P A;  3N0Q A;  4NBB D;  2D2C D;  1SQQ E;  3L72 E; 
#chains in the Genus database with same CATH homology
 2ZYL A;  3GTS A;  3EQQ A;  3VCP A;  1BE3 E;  2XR8 A;  4QUQ A;  2E76 D;  2YIU C;  5BOK A;  1VCK A;  3D89 A;  4HJL A;  1UUW A;  2YFI A;  5KKZ C;  2CKF A;  4U3F E;  2NVG A;  2E74 D;  1L0L E;  2GBX A;  3CX5 E;  1NTZ E;  1NYK A;  2HML A;  3GL2 A;  4NBD D;  1FQT A;  5AEU A;  4NBG D;  1NU1 E;  3BCC E;  4HM5 A;  2E75 D;  3GZY A;  1O7M A;  1ULJ A;  2FYU E;  2Q3W A;  4P1C H;  1RFS A;  2NUK A;  2YFJ A;  2A06 E;  3H1L E;  1L0N E;  1SQX E;  2BMR A;  2E4Q A;  2QJK C;  1KYO E;  2QJY C;  3L73 E;  2HMN A;  4QDF B;  3L70 E;  4HKV A;  2YFL A;  4P1B H;  1SQB E;  3H1K E;  1PP9 E;  2DE5 D;  4HM2 A;  2I7F A;  3VMH D;  2XSH A;  1ZRT E;  5AEW A;  4AIV A;  4NBA D;  1BCC E;  4H0L D;  1G8K B;  2JZA A;  2BMO A;  3GCE A;  1JM1 A;  4HM4 A;  1RIE A;  3CXH E;  2BCC E;  4PD4 E;  1O7H A;  4QDF A;  2NVE A;  1G8J B;  1VM9 A;  1NTK E;  4QCK A;  4QUR A;  3EN1 A;  1O7N A;  4HM7 A;  3L71 E;  4HM8 A;  1VF5 D;  3H1J E;  2B24 A;  3L75 E;  2HMK A;  4NBE D;  2DE7 D;  2DE6 D;  1EG9 A;  1ULI A;  5CXM A;  1P84 E;  1NDO A;  1SQV E;  1O7W A;  2ZT9 D;  3CWB E;  5HL4 A;  2HMO A;  3GOB A;  2GBW A;  2B1X A;  4NBH D;  1KB9 E;  2IBZ E;  3TGU E;  4AAY B;  4EMJ B;  4NBF D;  1O7G A;  1SJG A;  2NWF A;  1WQL A;  3VMG D;  3GL0 A;  3GTE A;  2NUM A;  4QUP A;  3VCA A;  2HMM A;  2XRX A;  2HMJ A;  4H44 D;  5KLV E;  1O7P A;  3AZC A;  2JO6 A;  2QPZ A;  1UUV A;  3GB4 A;  4QDD A;  4NBC D;  2NVF A;  5KLI C;  2XSO A;  1NTM E;  3GZX A;  2YVJ B;  3H1H E;  1PPJ E;  3H1I E;  1Q90 C;  2QJP C;  4HM3 A;  3C0D A;  4OGQ D;  4HM1 A;  3DQY A;  4HM6 A;  4PV1 D;  3L74 E;  1SQP E;  1EZV E;  4QDC A;  2BMQ A;  4H13 D;  3GKE A;  4NB9 D;  4HM0 A;  4NB8 D;  2FYN C;  3VMI D;  3FOU A;  2E4P A;  3N0Q A;  4NBB D;  2D2C D;  1SQQ E;  3L72 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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