4HM5A

Naphthalene 1,2-dioxygenase bound to indene
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase subunit alpha
publication title Naphthalene 1,2-Dioxygenase bound to indene
rcsb
source organism Pseudomonas sp. c18
molecule tags Oxidoreductase/oxidoreductase inhibitor
total genus 163
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2012-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 4hm5A02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 4hm5A01
3TGUE 3DQYA 4NBEA 1G8JB 5AEUA 4EMJB 4NBAD 4NBCA 4QCKA 2CKFA 3GB4A 1FQTA 2NVFA 2YFJA 2FYNC 2D2CD 2QJPC 1Z02A 1Z01A 2ZYLA 4HM8A 4NBGA 1O7MA 3L74E 3N0QA 2NVGA 3GL0A 2DE6A 3GZXA 1L0NE 3L72E 4NBFD 3GCFA 1NYKA 2XSHA 2DE7D 3VMHA 1JM1A 4QDFB 1G8KB 3GZYA 1ULIA 1PPJE 2GBXA 2BMRA 2FYUE 3GTSA 2E4QA 2HMKA 1VM9A 2HMJA 1BE3E 1WQLA 4P1BH 4NBAA 3AZCA 2HMOA 4HM4A 2QJKC 3L73E 1SQVE 5KLVE 1SQPE 1BCCE 2E4PA 2GBWA 4NB8D 3CX5E 3CXHE 4QDFA 4HM6A 2QJYC 5CXMA 3GL2A 1VCKA 3BCCE 3EN1A 4H0LD 4QUPA 3GKEA 4QDDA 1NTME 4NBFA 1Q90C 2Q3WA 3VMID 2DE7A 4NBDA 1O7HA 1SJGA 3FOUA 1UUWA 2NUKA 3VMGD 3H1KE 4HJLA 2BMQA 4OGQD 4NBBA 1PP9E 3GTEA 4QUQA 2JO6A 4NBHA 2B24A 4NBED 2DE5D 2HMNA 2NUMA 1SQXE 1WW9A 2YFLA 2XR8A 4PD4E 3H1LE 3L71E 2YFIA 2E76D 2YIUC 4HM2A 1VF5D 1O7WA 4HM1A 1ZRTE 1KYOE 4P1CH 2E74D 4NBGD 5KLIC 2YVJB 1L0LE 4HM3A 4HM5A 4NB9D 1KB9E 1NDOA 4AAYB 4H13D 4H44D 4QURA 3VMHD 3GOBA 3C0DA 2I7FA 1SQBE 2XRXA 2BCCE 2HMMA 2B1XA 3GCEA 3D89A 4HM0A 2DE5A 4HM7A 2A06E 2IBZE 4HKVA 1EZVE 1NU1E 3CWBE 3EQQA 3GKQA 2NVEA 1NTZE 4NBCD 3H1JE 5KKZC 4NB8A 1ULJA 2QPZA 2XSOA 2ZT9D 1O7GA 1NTKE 1RIEA 1RFSA 3VCAA 3H1IE 3H1HE 2BMOA 1UUVA 4NB9A 2NWFA 3L75E 4QDCA 3VMIA 1P84E 2DE6D 4NBDD 1EG9A 5HL4A 4U3FE 1O7NA 4AIVA 3VMGA 5AEWA 3L70E 1O7PA 4PV1D 2JZAA 5BOKA 3VCPA 4NBBD 2E75D 1Z03A 1SQQE 2HMLA 4NBHD
chains in the Genus database with same CATH superfamily
3TGUE 3DQYA 4NBEA 1G8JB 5AEUA 4EMJB 4NBAD 4NBCA 4QCKA 2CKFA 3GB4A 1FQTA 2NVFA 2YFJA 2FYNC 2D2CD 2QJPC 1Z02A 1Z01A 2ZYLA 4HM8A 4NBGA 1O7MA 3L74E 3N0QA 2NVGA 3GL0A 2DE6A 3GZXA 1L0NE 3L72E 4NBFD 3GCFA 1NYKA 2XSHA 2DE7D 3VMHA 1JM1A 4QDFB 1G8KB 3GZYA 1ULIA 1PPJE 2GBXA 2BMRA 2FYUE 3GTSA 2E4QA 2HMKA 1VM9A 2HMJA 1BE3E 1WQLA 4P1BH 4NBAA 3AZCA 2HMOA 4HM4A 2QJKC 3L73E 1SQVE 5KLVE 1SQPE 1BCCE 2E4PA 2GBWA 4NB8D 3CX5E 3CXHE 4QDFA 4HM6A 2QJYC 5CXMA 3GL2A 1VCKA 3BCCE 3EN1A 4H0LD 4QUPA 3GKEA 4QDDA 1NTME 4NBFA 1Q90C 2Q3WA 3VMID 2DE7A 4NBDA 1O7HA 1SJGA 3FOUA 1UUWA 2NUKA 3VMGD 3H1KE 4HJLA 2BMQA 4OGQD 4NBBA 1PP9E 3GTEA 4QUQA 2JO6A 4NBHA 2B24A 4NBED 2DE5D 2HMNA 2NUMA 1SQXE 1WW9A 2YFLA 2XR8A 4PD4E 3H1LE 3L71E 2YFIA 2E76D 2YIUC 4HM2A 1VF5D 1O7WA 4HM1A 1ZRTE 1KYOE 4P1CH 2E74D 4NBGD 5KLIC 2YVJB 1L0LE 4HM3A 4HM5A 4NB9D 1KB9E 1NDOA 4AAYB 4H13D 4H44D 4QURA 3VMHD 3GOBA 3C0DA 2I7FA 1SQBE 2XRXA 2BCCE 2HMMA 2B1XA 3GCEA 3D89A 4HM0A 2DE5A 4HM7A 2A06E 2IBZE 4HKVA 1EZVE 1NU1E 3CWBE 3EQQA 3GKQA 2NVEA 1NTZE 4NBCD 3H1JE 5KKZC 4NB8A 1ULJA 2QPZA 2XSOA 2ZT9D 1O7GA 1NTKE 1RIEA 1RFSA 3VCAA 3H1IE 3H1HE 2BMOA 1UUVA 4NB9A 2NWFA 3L75E 4QDCA 3VMIA 1P84E 2DE6D 4NBDD 1EG9A 5HL4A 4U3FE 1O7NA 4AIVA 3VMGA 5AEWA 3L70E 1O7PA 4PV1D 2JZAA 5BOKA 3VCPA 4NBBD 2E75D 1Z03A 1SQQE 2HMLA 4NBHD
chains in the Genus database with same CATH topology
3TGUE 3DQYA 4NBEA 1G8JB 5AEUA 4EMJB 4NBAD 4NBCA 4QCKA 2CKFA 3GB4A 1FQTA 2NVFA 2YFJA 2FYNC 2D2CD 2QJPC 1Z02A 1Z01A 2ZYLA 4HM8A 4NBGA 1O7MA 3L74E 3N0QA 2NVGA 3GL0A 2DE6A 3GZXA 1L0NE 3L72E 4NBFD 3GCFA 1NYKA 2XSHA 2DE7D 3VMHA 1JM1A 4QDFB 1G8KB 3GZYA 1ULIA 1PPJE 2GBXA 2BMRA 2FYUE 3GTSA 2E4QA 2HMKA 1VM9A 2HMJA 1BE3E 1WQLA 4P1BH 4NBAA 3AZCA 2HMOA 4HM4A 2QJKC 3L73E 1SQVE 5KLVE 1SQPE 1BCCE 2E4PA 2GBWA 4NB8D 3CX5E 3CXHE 4QDFA 4HM6A 2QJYC 5CXMA 3GL2A 1VCKA 3BCCE 3EN1A 4H0LD 4QUPA 3GKEA 4QDDA 1NTME 4NBFA 1Q90C 2Q3WA 3VMID 2DE7A 4NBDA 1O7HA 1SJGA 3FOUA 1UUWA 2NUKA 3VMGD 3H1KE 4HJLA 2BMQA 4OGQD 4NBBA 1PP9E 3GTEA 4QUQA 2JO6A 4NBHA 2B24A 4NBED 2DE5D 2HMNA 2NUMA 1SQXE 1WW9A 2YFLA 2XR8A 4PD4E 3H1LE 3L71E 2YFIA 2E76D 2YIUC 4HM2A 1VF5D 1O7WA 4HM1A 1ZRTE 1KYOE 4P1CH 2E74D 4NBGD 5KLIC 2YVJB 1L0LE 4HM3A 4HM5A 4NB9D 1KB9E 1NDOA 4AAYB 4H13D 4H44D 4QURA 3VMHD 3GOBA 3C0DA 2I7FA 1SQBE 2XRXA 2BCCE 2HMMA 2B1XA 3GCEA 3D89A 4HM0A 2DE5A 4HM7A 2A06E 2IBZE 4HKVA 1EZVE 1NU1E 3CWBE 3EQQA 3GKQA 2NVEA 1NTZE 4NBCD 3H1JE 5KKZC 4NB8A 1ULJA 2QPZA 2XSOA 2ZT9D 1O7GA 1NTKE 1RIEA 1RFSA 3VCAA 3H1IE 3H1HE 2BMOA 1UUVA 4NB9A 2NWFA 3L75E 4QDCA 3VMIA 1P84E 2DE6D 4NBDD 1EG9A 5HL4A 4U3FE 1O7NA 4AIVA 3VMGA 5AEWA 3L70E 1O7PA 4PV1D 2JZAA 5BOKA 3VCPA 4NBBD 2E75D 1Z03A 1SQQE 2HMLA 4NBHD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TGU E;  3DQY A;  4NBE A;  1G8J B;  5AEU A;  4EMJ B;  4NBA D;  4NBC A;  4QCK A;  2CKF A;  3GB4 A;  1FQT A;  2NVF A;  2YFJ A;  2FYN C;  2D2C D;  2QJP C;  1Z02 A;  1Z01 A;  2ZYL A;  4HM8 A;  4NBG A;  1O7M A;  3L74 E;  3N0Q A;  2NVG A;  3GL0 A;  2DE6 A;  3GZX A;  1L0N E;  3L72 E;  4NBF D;  3GCF A;  1NYK A;  2XSH A;  2DE7 D;  3VMH A;  1JM1 A;  4QDF B;  1G8K B;  3GZY A;  1ULI A;  1PPJ E;  2GBX A;  2BMR A;  2FYU E;  3GTS A;  2E4Q A;  2HMK A;  1VM9 A;  2HMJ A;  1BE3 E;  1WQL A;  4P1B H;  4NBA A;  3AZC A;  2HMO A;  4HM4 A;  2QJK C;  3L73 E;  1SQV E;  5KLV E;  1SQP E;  1BCC E;  2E4P A;  2GBW A;  4NB8 D;  3CX5 E;  3CXH E;  4QDF A;  4HM6 A;  2QJY C;  5CXM A;  3GL2 A;  1VCK A;  3BCC E;  3EN1 A;  4H0L D;  4QUP A;  3GKE A;  4QDD A;  1NTM E;  4NBF A;  1Q90 C;  2Q3W A;  3VMI D;  2DE7 A;  4NBD A;  1O7H A;  1SJG A;  3FOU A;  1UUW A;  2NUK A;  3VMG D;  3H1K E;  4HJL A;  2BMQ A;  4OGQ D;  4NBB A;  1PP9 E;  3GTE A;  4QUQ A;  2JO6 A;  4NBH A;  2B24 A;  4NBE D;  2DE5 D;  2HMN A;  2NUM A;  1SQX E;  1WW9 A;  2YFL A;  2XR8 A;  4PD4 E;  3H1L E;  3L71 E;  2YFI A;  2E76 D;  2YIU C;  4HM2 A;  1VF5 D;  1O7W A;  4HM1 A;  1ZRT E;  1KYO E;  4P1C H;  2E74 D;  4NBG D;  5KLI C;  2YVJ B;  1L0L E;  4HM3 A;  4HM5 A;  4NB9 D;  1KB9 E;  1NDO A;  4AAY B;  4H13 D;  4H44 D;  4QUR A;  3VMH D;  3GOB A;  3C0D A;  2I7F A;  1SQB E;  2XRX A;  2BCC E;  2HMM A;  2B1X A;  3GCE A;  3D89 A;  4HM0 A;  2DE5 A;  4HM7 A;  2A06 E;  2IBZ E;  4HKV A;  1EZV E;  1NU1 E;  3CWB E;  3EQQ A;  3GKQ A;  2NVE A;  1NTZ E;  4NBC D;  3H1J E;  5KKZ C;  4NB8 A;  1ULJ A;  2QPZ A;  2XSO A;  2ZT9 D;  1O7G A;  1NTK E;  1RIE A;  1RFS A;  3VCA A;  3H1I E;  3H1H E;  2BMO A;  1UUV A;  4NB9 A;  2NWF A;  3L75 E;  4QDC A;  3VMI A;  1P84 E;  2DE6 D;  4NBD D;  1EG9 A;  5HL4 A;  4U3F E;  1O7N A;  4AIV A;  3VMG A;  5AEW A;  3L70 E;  1O7P A;  4PV1 D;  2JZA A;  5BOK A;  3VCP A;  4NBB D;  2E75 D;  1Z03 A;  1SQQ E;  2HML A;  4NBH D; 
#chains in the Genus database with same CATH topology
 3TGU E;  3DQY A;  4NBE A;  1G8J B;  5AEU A;  4EMJ B;  4NBA D;  4NBC A;  4QCK A;  2CKF A;  3GB4 A;  1FQT A;  2NVF A;  2YFJ A;  2FYN C;  2D2C D;  2QJP C;  1Z02 A;  1Z01 A;  2ZYL A;  4HM8 A;  4NBG A;  1O7M A;  3L74 E;  3N0Q A;  2NVG A;  3GL0 A;  2DE6 A;  3GZX A;  1L0N E;  3L72 E;  4NBF D;  3GCF A;  1NYK A;  2XSH A;  2DE7 D;  3VMH A;  1JM1 A;  4QDF B;  1G8K B;  3GZY A;  1ULI A;  1PPJ E;  2GBX A;  2BMR A;  2FYU E;  3GTS A;  2E4Q A;  2HMK A;  1VM9 A;  2HMJ A;  1BE3 E;  1WQL A;  4P1B H;  4NBA A;  3AZC A;  2HMO A;  4HM4 A;  2QJK C;  3L73 E;  1SQV E;  5KLV E;  1SQP E;  1BCC E;  2E4P A;  2GBW A;  4NB8 D;  3CX5 E;  3CXH E;  4QDF A;  4HM6 A;  2QJY C;  5CXM A;  3GL2 A;  1VCK A;  3BCC E;  3EN1 A;  4H0L D;  4QUP A;  3GKE A;  4QDD A;  1NTM E;  4NBF A;  1Q90 C;  2Q3W A;  3VMI D;  2DE7 A;  4NBD A;  1O7H A;  1SJG A;  3FOU A;  1UUW A;  2NUK A;  3VMG D;  3H1K E;  4HJL A;  2BMQ A;  4OGQ D;  4NBB A;  1PP9 E;  3GTE A;  4QUQ A;  2JO6 A;  4NBH A;  2B24 A;  4NBE D;  2DE5 D;  2HMN A;  2NUM A;  1SQX E;  1WW9 A;  2YFL A;  2XR8 A;  4PD4 E;  3H1L E;  3L71 E;  2YFI A;  2E76 D;  2YIU C;  4HM2 A;  1VF5 D;  1O7W A;  4HM1 A;  1ZRT E;  1KYO E;  4P1C H;  2E74 D;  4NBG D;  5KLI C;  2YVJ B;  1L0L E;  4HM3 A;  4HM5 A;  4NB9 D;  1KB9 E;  1NDO A;  4AAY B;  4H13 D;  4H44 D;  4QUR A;  3VMH D;  3GOB A;  3C0D A;  2I7F A;  1SQB E;  2XRX A;  2BCC E;  2HMM A;  2B1X A;  3GCE A;  3D89 A;  4HM0 A;  2DE5 A;  4HM7 A;  2A06 E;  2IBZ E;  4HKV A;  1EZV E;  1NU1 E;  3CWB E;  3EQQ A;  3GKQ A;  2NVE A;  1NTZ E;  4NBC D;  3H1J E;  5KKZ C;  4NB8 A;  1ULJ A;  2QPZ A;  2XSO A;  2ZT9 D;  1O7G A;  1NTK E;  1RIE A;  1RFS A;  3VCA A;  3H1I E;  3H1H E;  2BMO A;  1UUV A;  4NB9 A;  2NWF A;  3L75 E;  4QDC A;  3VMI A;  1P84 E;  2DE6 D;  4NBD D;  1EG9 A;  5HL4 A;  4U3F E;  1O7N A;  4AIV A;  3VMG A;  5AEW A;  3L70 E;  1O7P A;  4PV1 D;  2JZA A;  5BOK A;  3VCP A;  4NBB D;  2E75 D;  1Z03 A;  1SQQ E;  2HML A;  4NBH D; 
#chains in the Genus database with same CATH homology
 3TGU E;  3DQY A;  4NBE A;  1G8J B;  5AEU A;  4EMJ B;  4NBA D;  4NBC A;  4QCK A;  2CKF A;  3GB4 A;  1FQT A;  2NVF A;  2YFJ A;  2FYN C;  2D2C D;  2QJP C;  1Z02 A;  1Z01 A;  2ZYL A;  4HM8 A;  4NBG A;  1O7M A;  3L74 E;  3N0Q A;  2NVG A;  3GL0 A;  2DE6 A;  3GZX A;  1L0N E;  3L72 E;  4NBF D;  3GCF A;  1NYK A;  2XSH A;  2DE7 D;  3VMH A;  1JM1 A;  4QDF B;  1G8K B;  3GZY A;  1ULI A;  1PPJ E;  2GBX A;  2BMR A;  2FYU E;  3GTS A;  2E4Q A;  2HMK A;  1VM9 A;  2HMJ A;  1BE3 E;  1WQL A;  4P1B H;  4NBA A;  3AZC A;  2HMO A;  4HM4 A;  2QJK C;  3L73 E;  1SQV E;  5KLV E;  1SQP E;  1BCC E;  2E4P A;  2GBW A;  4NB8 D;  3CX5 E;  3CXH E;  4QDF A;  4HM6 A;  2QJY C;  5CXM A;  3GL2 A;  1VCK A;  3BCC E;  3EN1 A;  4H0L D;  4QUP A;  3GKE A;  4QDD A;  1NTM E;  4NBF A;  1Q90 C;  2Q3W A;  3VMI D;  2DE7 A;  4NBD A;  1O7H A;  1SJG A;  3FOU A;  1UUW A;  2NUK A;  3VMG D;  3H1K E;  4HJL A;  2BMQ A;  4OGQ D;  4NBB A;  1PP9 E;  3GTE A;  4QUQ A;  2JO6 A;  4NBH A;  2B24 A;  4NBE D;  2DE5 D;  2HMN A;  2NUM A;  1SQX E;  1WW9 A;  2YFL A;  2XR8 A;  4PD4 E;  3H1L E;  3L71 E;  2YFI A;  2E76 D;  2YIU C;  4HM2 A;  1VF5 D;  1O7W A;  4HM1 A;  1ZRT E;  1KYO E;  4P1C H;  2E74 D;  4NBG D;  5KLI C;  2YVJ B;  1L0L E;  4HM3 A;  4HM5 A;  4NB9 D;  1KB9 E;  1NDO A;  4AAY B;  4H13 D;  4H44 D;  4QUR A;  3VMH D;  3GOB A;  3C0D A;  2I7F A;  1SQB E;  2XRX A;  2BCC E;  2HMM A;  2B1X A;  3GCE A;  3D89 A;  4HM0 A;  2DE5 A;  4HM7 A;  2A06 E;  2IBZ E;  4HKV A;  1EZV E;  1NU1 E;  3CWB E;  3EQQ A;  3GKQ A;  2NVE A;  1NTZ E;  4NBC D;  3H1J E;  5KKZ C;  4NB8 A;  1ULJ A;  2QPZ A;  2XSO A;  2ZT9 D;  1O7G A;  1NTK E;  1RIE A;  1RFS A;  3VCA A;  3H1I E;  3H1H E;  2BMO A;  1UUV A;  4NB9 A;  2NWF A;  3L75 E;  4QDC A;  3VMI A;  1P84 E;  2DE6 D;  4NBD D;  1EG9 A;  5HL4 A;  4U3F E;  1O7N A;  4AIV A;  3VMG A;  5AEW A;  3L70 E;  1O7P A;  4PV1 D;  2JZA A;  5BOK A;  3VCP A;  4NBB D;  2E75 D;  1Z03 A;  1SQQ E;  2HML A;  4NBH D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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