1O7GA

Naphthalene 1,2-dioxygenase with naphthalene bound in the active site.
Total Genus 163
50100150200250300350400020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
50100150200250300350400400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Pseudomonas putida
publication title Crystal Structure of Naphthalene Dioxygenase: Side-on Binding of Dioxygen to Iron
pubmed doi rcsb
molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
total genus 163
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2002-11-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1o7gA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1o7gA01
5AEWA 4HM4A 1G8JB 3H1KE 4NB8D 4NBDA 1NYKA 4QURA 2E76D 3L75E 1WQLA 2DE6D 2FYUE 1RFSA 3BCCE 3VMID 4NBCA 2YFJA 4H13D 1Q90C 2CKFA 5KLVE 2NWFA 1KB9E 4EMJB 3N0QA 1VCKA 2YIUC 1SQXE 3VCPA 1NTME 1JM1A 3L73E 1FQTA 4HM6A 1ZRTE 4NB8A 3GL0A 2A06E 4AAYB 4HJLA 3L70E 1SQPE 2HMOA 2JZAA 2DE6A 4NBCD 3GCFA 3VMIA 5KKZC 2NUKA 2BCCE 2HMMA 3GB4A 3H1HE 2FYNC 5KLIC 4QCKA 1P84E 1NU1E 2HMLA 2XSHA 2BMRA 3EN1A 4HKVA 4QDCA 5AEUA 2YFLA 3DQYA 3FOUA 1L0LE 2HMKA 3VMHD 4HM1A 1ULJA 3CXHE 3L71E 1VM9A 2IBZE 2NUMA 2NVFA 2NVGA 1NDOA 1RIEA 4NBGD 1Z01A 4NBFD 1SQVE 2DE7D 2E4PA 4HM5A 1Z03A 4NBBD 2XSOA 3GL2A 1O7GA 1BE3E 4NBAD 1NTKE 1EZVE 3CWBE 2YFIA 1UUVA 3EQQA 3VMHA 4H44D 3AZCA 2I7FA 3L74E 1L0NE 4U3FE 1PP9E 2E4QA 3GTSA 4HM8A 4NBGA 4NBFA 1O7WA 4HM7A 2DE7A 3C0DA 1SJGA 4NB9D 2QPZA 3CX5E 4NBAA 4NBBA 1NTZE 1ULIA 3H1IE 1O7HA 5CXMA 1VF5D 3GKEA 1O7PA 1BCCE 3D89A 1Z02A 2Q3WA 4AIVA 4NB9A 4OGQD 1UUWA 4HM0A 1WW9A 2BMQA 2GBWA 3GOBA 4H0LD 4HM2A 2QJYC 4NBED 1SQBE 3GZXA 2E75D 2XRXA 2ZYLA 4P1BH 5BOKA 2B24A 1G8KB 4NBHD 2JO6A 1KYOE 1O7MA 3VMGD 2XR8A 2DE5D 2HMNA 1O7NA 3H1JE 2ZT9D 3GZYA 2E74D 3GKQA 2BMOA 2NVEA 1SQQE 2B1XA 2D2CD 1PPJE 4PD4E 4QUPA 4NBEA 3GTEA 3VCAA 4NBDD 1EG9A 5HL4A 4QDFB 3L72E 4PV1D 4NBHA 3TGUE 2GBXA 2QJPC 4P1CH 4QDDA 2HMJA 4QUQA 3GCEA 2YVJB 4HM3A 3VMGA 2DE5A 2QJKC 4QDFA 3H1LE
chains in the Genus database with same CATH superfamily
5AEWA 4HM4A 1G8JB 3H1KE 4NB8D 4NBDA 1NYKA 4QURA 2E76D 3L75E 1WQLA 2DE6D 2FYUE 1RFSA 3BCCE 3VMID 4NBCA 2YFJA 4H13D 1Q90C 2CKFA 5KLVE 2NWFA 1KB9E 4EMJB 3N0QA 1VCKA 2YIUC 1SQXE 3VCPA 1NTME 1JM1A 3L73E 1FQTA 4HM6A 1ZRTE 4NB8A 3GL0A 2A06E 4AAYB 4HJLA 3L70E 1SQPE 2HMOA 2JZAA 2DE6A 4NBCD 3GCFA 3VMIA 5KKZC 2NUKA 2BCCE 2HMMA 3GB4A 3H1HE 2FYNC 5KLIC 4QCKA 1P84E 1NU1E 2HMLA 2XSHA 2BMRA 3EN1A 4HKVA 4QDCA 5AEUA 2YFLA 3DQYA 3FOUA 1L0LE 2HMKA 3VMHD 4HM1A 1ULJA 3CXHE 3L71E 1VM9A 2IBZE 2NUMA 2NVFA 2NVGA 1NDOA 1RIEA 4NBGD 1Z01A 4NBFD 1SQVE 2DE7D 2E4PA 4HM5A 1Z03A 4NBBD 2XSOA 3GL2A 1O7GA 1BE3E 4NBAD 1NTKE 1EZVE 3CWBE 2YFIA 1UUVA 3EQQA 3VMHA 4H44D 3AZCA 2I7FA 3L74E 1L0NE 4U3FE 1PP9E 2E4QA 3GTSA 4HM8A 4NBGA 4NBFA 1O7WA 4HM7A 2DE7A 3C0DA 1SJGA 4NB9D 2QPZA 3CX5E 4NBAA 4NBBA 1NTZE 1ULIA 3H1IE 1O7HA 5CXMA 1VF5D 3GKEA 1O7PA 1BCCE 3D89A 1Z02A 2Q3WA 4AIVA 4NB9A 4OGQD 1UUWA 4HM0A 1WW9A 2BMQA 2GBWA 3GOBA 4H0LD 4HM2A 2QJYC 4NBED 1SQBE 3GZXA 2E75D 2XRXA 2ZYLA 4P1BH 5BOKA 2B24A 1G8KB 4NBHD 2JO6A 1KYOE 1O7MA 3VMGD 2XR8A 2DE5D 2HMNA 1O7NA 3H1JE 2ZT9D 3GZYA 2E74D 3GKQA 2BMOA 2NVEA 1SQQE 2B1XA 2D2CD 1PPJE 4PD4E 4QUPA 4NBEA 3GTEA 3VCAA 4NBDD 1EG9A 5HL4A 4QDFB 3L72E 4PV1D 4NBHA 3TGUE 2GBXA 2QJPC 4P1CH 4QDDA 2HMJA 4QUQA 3GCEA 2YVJB 4HM3A 3VMGA 2DE5A 2QJKC 4QDFA 3H1LE
chains in the Genus database with same CATH topology
5AEWA 4HM4A 1G8JB 3H1KE 4NB8D 4NBDA 1NYKA 4QURA 2E76D 3L75E 1WQLA 2DE6D 2FYUE 1RFSA 3BCCE 3VMID 4NBCA 2YFJA 4H13D 1Q90C 2CKFA 5KLVE 2NWFA 1KB9E 4EMJB 3N0QA 1VCKA 2YIUC 1SQXE 3VCPA 1NTME 1JM1A 3L73E 1FQTA 4HM6A 1ZRTE 4NB8A 3GL0A 2A06E 4AAYB 4HJLA 3L70E 1SQPE 2HMOA 2JZAA 2DE6A 4NBCD 3GCFA 3VMIA 5KKZC 2NUKA 2BCCE 2HMMA 3GB4A 3H1HE 2FYNC 5KLIC 4QCKA 1P84E 1NU1E 2HMLA 2XSHA 2BMRA 3EN1A 4HKVA 4QDCA 5AEUA 2YFLA 3DQYA 3FOUA 1L0LE 2HMKA 3VMHD 4HM1A 1ULJA 3CXHE 3L71E 1VM9A 2IBZE 2NUMA 2NVFA 2NVGA 1NDOA 1RIEA 4NBGD 1Z01A 4NBFD 1SQVE 2DE7D 2E4PA 4HM5A 1Z03A 4NBBD 2XSOA 3GL2A 1O7GA 1BE3E 4NBAD 1NTKE 1EZVE 3CWBE 2YFIA 1UUVA 3EQQA 3VMHA 4H44D 3AZCA 2I7FA 3L74E 1L0NE 4U3FE 1PP9E 2E4QA 3GTSA 4HM8A 4NBGA 4NBFA 1O7WA 4HM7A 2DE7A 3C0DA 1SJGA 4NB9D 2QPZA 3CX5E 4NBAA 4NBBA 1NTZE 1ULIA 3H1IE 1O7HA 5CXMA 1VF5D 3GKEA 1O7PA 1BCCE 3D89A 1Z02A 2Q3WA 4AIVA 4NB9A 4OGQD 1UUWA 4HM0A 1WW9A 2BMQA 2GBWA 3GOBA 4H0LD 4HM2A 2QJYC 4NBED 1SQBE 3GZXA 2E75D 2XRXA 2ZYLA 4P1BH 5BOKA 2B24A 1G8KB 4NBHD 2JO6A 1KYOE 1O7MA 3VMGD 2XR8A 2DE5D 2HMNA 1O7NA 3H1JE 2ZT9D 3GZYA 2E74D 3GKQA 2BMOA 2NVEA 1SQQE 2B1XA 2D2CD 1PPJE 4PD4E 4QUPA 4NBEA 3GTEA 3VCAA 4NBDD 1EG9A 5HL4A 4QDFB 3L72E 4PV1D 4NBHA 3TGUE 2GBXA 2QJPC 4P1CH 4QDDA 2HMJA 4QUQA 3GCEA 2YVJB 4HM3A 3VMGA 2DE5A 2QJKC 4QDFA 3H1LE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AEW A;  4HM4 A;  1G8J B;  3H1K E;  4NB8 D;  4NBD A;  1NYK A;  4QUR A;  2E76 D;  3L75 E;  1WQL A;  2DE6 D;  2FYU E;  1RFS A;  3BCC E;  3VMI D;  4NBC A;  2YFJ A;  4H13 D;  1Q90 C;  2CKF A;  5KLV E;  2NWF A;  1KB9 E;  4EMJ B;  3N0Q A;  1VCK A;  2YIU C;  1SQX E;  3VCP A;  1NTM E;  1JM1 A;  3L73 E;  1FQT A;  4HM6 A;  1ZRT E;  4NB8 A;  3GL0 A;  2A06 E;  4AAY B;  4HJL A;  3L70 E;  1SQP E;  2HMO A;  2JZA A;  2DE6 A;  4NBC D;  3GCF A;  3VMI A;  5KKZ C;  2NUK A;  2BCC E;  2HMM A;  3GB4 A;  3H1H E;  2FYN C;  5KLI C;  4QCK A;  1P84 E;  1NU1 E;  2HML A;  2XSH A;  2BMR A;  3EN1 A;  4HKV A;  4QDC A;  5AEU A;  2YFL A;  3DQY A;  3FOU A;  1L0L E;  2HMK A;  3VMH D;  4HM1 A;  1ULJ A;  3CXH E;  3L71 E;  1VM9 A;  2IBZ E;  2NUM A;  2NVF A;  2NVG A;  1NDO A;  1RIE A;  4NBG D;  1Z01 A;  4NBF D;  1SQV E;  2DE7 D;  2E4P A;  4HM5 A;  1Z03 A;  4NBB D;  2XSO A;  3GL2 A;  1O7G A;  1BE3 E;  4NBA D;  1NTK E;  1EZV E;  3CWB E;  2YFI A;  1UUV A;  3EQQ A;  3VMH A;  4H44 D;  3AZC A;  2I7F A;  3L74 E;  1L0N E;  4U3F E;  1PP9 E;  2E4Q A;  3GTS A;  4HM8 A;  4NBG A;  4NBF A;  1O7W A;  4HM7 A;  2DE7 A;  3C0D A;  1SJG A;  4NB9 D;  2QPZ A;  3CX5 E;  4NBA A;  4NBB A;  1NTZ E;  1ULI A;  3H1I E;  1O7H A;  5CXM A;  1VF5 D;  3GKE A;  1O7P A;  1BCC E;  3D89 A;  1Z02 A;  2Q3W A;  4AIV A;  4NB9 A;  4OGQ D;  1UUW A;  4HM0 A;  1WW9 A;  2BMQ A;  2GBW A;  3GOB A;  4H0L D;  4HM2 A;  2QJY C;  4NBE D;  1SQB E;  3GZX A;  2E75 D;  2XRX A;  2ZYL A;  4P1B H;  5BOK A;  2B24 A;  1G8K B;  4NBH D;  2JO6 A;  1KYO E;  1O7M A;  3VMG D;  2XR8 A;  2DE5 D;  2HMN A;  1O7N A;  3H1J E;  2ZT9 D;  3GZY A;  2E74 D;  3GKQ A;  2BMO A;  2NVE A;  1SQQ E;  2B1X A;  2D2C D;  1PPJ E;  4PD4 E;  4QUP A;  4NBE A;  3GTE A;  3VCA A;  4NBD D;  1EG9 A;  5HL4 A;  4QDF B;  3L72 E;  4PV1 D;  4NBH A;  3TGU E;  2GBX A;  2QJP C;  4P1C H;  4QDD A;  2HMJ A;  4QUQ A;  3GCE A;  2YVJ B;  4HM3 A;  3VMG A;  2DE5 A;  2QJK C;  4QDF A;  3H1L E; 
#chains in the Genus database with same CATH topology
 5AEW A;  4HM4 A;  1G8J B;  3H1K E;  4NB8 D;  4NBD A;  1NYK A;  4QUR A;  2E76 D;  3L75 E;  1WQL A;  2DE6 D;  2FYU E;  1RFS A;  3BCC E;  3VMI D;  4NBC A;  2YFJ A;  4H13 D;  1Q90 C;  2CKF A;  5KLV E;  2NWF A;  1KB9 E;  4EMJ B;  3N0Q A;  1VCK A;  2YIU C;  1SQX E;  3VCP A;  1NTM E;  1JM1 A;  3L73 E;  1FQT A;  4HM6 A;  1ZRT E;  4NB8 A;  3GL0 A;  2A06 E;  4AAY B;  4HJL A;  3L70 E;  1SQP E;  2HMO A;  2JZA A;  2DE6 A;  4NBC D;  3GCF A;  3VMI A;  5KKZ C;  2NUK A;  2BCC E;  2HMM A;  3GB4 A;  3H1H E;  2FYN C;  5KLI C;  4QCK A;  1P84 E;  1NU1 E;  2HML A;  2XSH A;  2BMR A;  3EN1 A;  4HKV A;  4QDC A;  5AEU A;  2YFL A;  3DQY A;  3FOU A;  1L0L E;  2HMK A;  3VMH D;  4HM1 A;  1ULJ A;  3CXH E;  3L71 E;  1VM9 A;  2IBZ E;  2NUM A;  2NVF A;  2NVG A;  1NDO A;  1RIE A;  4NBG D;  1Z01 A;  4NBF D;  1SQV E;  2DE7 D;  2E4P A;  4HM5 A;  1Z03 A;  4NBB D;  2XSO A;  3GL2 A;  1O7G A;  1BE3 E;  4NBA D;  1NTK E;  1EZV E;  3CWB E;  2YFI A;  1UUV A;  3EQQ A;  3VMH A;  4H44 D;  3AZC A;  2I7F A;  3L74 E;  1L0N E;  4U3F E;  1PP9 E;  2E4Q A;  3GTS A;  4HM8 A;  4NBG A;  4NBF A;  1O7W A;  4HM7 A;  2DE7 A;  3C0D A;  1SJG A;  4NB9 D;  2QPZ A;  3CX5 E;  4NBA A;  4NBB A;  1NTZ E;  1ULI A;  3H1I E;  1O7H A;  5CXM A;  1VF5 D;  3GKE A;  1O7P A;  1BCC E;  3D89 A;  1Z02 A;  2Q3W A;  4AIV A;  4NB9 A;  4OGQ D;  1UUW A;  4HM0 A;  1WW9 A;  2BMQ A;  2GBW A;  3GOB A;  4H0L D;  4HM2 A;  2QJY C;  4NBE D;  1SQB E;  3GZX A;  2E75 D;  2XRX A;  2ZYL A;  4P1B H;  5BOK A;  2B24 A;  1G8K B;  4NBH D;  2JO6 A;  1KYO E;  1O7M A;  3VMG D;  2XR8 A;  2DE5 D;  2HMN A;  1O7N A;  3H1J E;  2ZT9 D;  3GZY A;  2E74 D;  3GKQ A;  2BMO A;  2NVE A;  1SQQ E;  2B1X A;  2D2C D;  1PPJ E;  4PD4 E;  4QUP A;  4NBE A;  3GTE A;  3VCA A;  4NBD D;  1EG9 A;  5HL4 A;  4QDF B;  3L72 E;  4PV1 D;  4NBH A;  3TGU E;  2GBX A;  2QJP C;  4P1C H;  4QDD A;  2HMJ A;  4QUQ A;  3GCE A;  2YVJ B;  4HM3 A;  3VMG A;  2DE5 A;  2QJK C;  4QDF A;  3H1L E; 
#chains in the Genus database with same CATH homology
 5AEW A;  4HM4 A;  1G8J B;  3H1K E;  4NB8 D;  4NBD A;  1NYK A;  4QUR A;  2E76 D;  3L75 E;  1WQL A;  2DE6 D;  2FYU E;  1RFS A;  3BCC E;  3VMI D;  4NBC A;  2YFJ A;  4H13 D;  1Q90 C;  2CKF A;  5KLV E;  2NWF A;  1KB9 E;  4EMJ B;  3N0Q A;  1VCK A;  2YIU C;  1SQX E;  3VCP A;  1NTM E;  1JM1 A;  3L73 E;  1FQT A;  4HM6 A;  1ZRT E;  4NB8 A;  3GL0 A;  2A06 E;  4AAY B;  4HJL A;  3L70 E;  1SQP E;  2HMO A;  2JZA A;  2DE6 A;  4NBC D;  3GCF A;  3VMI A;  5KKZ C;  2NUK A;  2BCC E;  2HMM A;  3GB4 A;  3H1H E;  2FYN C;  5KLI C;  4QCK A;  1P84 E;  1NU1 E;  2HML A;  2XSH A;  2BMR A;  3EN1 A;  4HKV A;  4QDC A;  5AEU A;  2YFL A;  3DQY A;  3FOU A;  1L0L E;  2HMK A;  3VMH D;  4HM1 A;  1ULJ A;  3CXH E;  3L71 E;  1VM9 A;  2IBZ E;  2NUM A;  2NVF A;  2NVG A;  1NDO A;  1RIE A;  4NBG D;  1Z01 A;  4NBF D;  1SQV E;  2DE7 D;  2E4P A;  4HM5 A;  1Z03 A;  4NBB D;  2XSO A;  3GL2 A;  1O7G A;  1BE3 E;  4NBA D;  1NTK E;  1EZV E;  3CWB E;  2YFI A;  1UUV A;  3EQQ A;  3VMH A;  4H44 D;  3AZC A;  2I7F A;  3L74 E;  1L0N E;  4U3F E;  1PP9 E;  2E4Q A;  3GTS A;  4HM8 A;  4NBG A;  4NBF A;  1O7W A;  4HM7 A;  2DE7 A;  3C0D A;  1SJG A;  4NB9 D;  2QPZ A;  3CX5 E;  4NBA A;  4NBB A;  1NTZ E;  1ULI A;  3H1I E;  1O7H A;  5CXM A;  1VF5 D;  3GKE A;  1O7P A;  1BCC E;  3D89 A;  1Z02 A;  2Q3W A;  4AIV A;  4NB9 A;  4OGQ D;  1UUW A;  4HM0 A;  1WW9 A;  2BMQ A;  2GBW A;  3GOB A;  4H0L D;  4HM2 A;  2QJY C;  4NBE D;  1SQB E;  3GZX A;  2E75 D;  2XRX A;  2ZYL A;  4P1B H;  5BOK A;  2B24 A;  1G8K B;  4NBH D;  2JO6 A;  1KYO E;  1O7M A;  3VMG D;  2XR8 A;  2DE5 D;  2HMN A;  1O7N A;  3H1J E;  2ZT9 D;  3GZY A;  2E74 D;  3GKQ A;  2BMO A;  2NVE A;  1SQQ E;  2B1X A;  2D2C D;  1PPJ E;  4PD4 E;  4QUP A;  4NBE A;  3GTE A;  3VCA A;  4NBD D;  1EG9 A;  5HL4 A;  4QDF B;  3L72 E;  4PV1 D;  4NBH A;  3TGU E;  2GBX A;  2QJP C;  4P1C H;  4QDD A;  2HMJ A;  4QUQ A;  3GCE A;  2YVJ B;  4HM3 A;  3VMG A;  2DE5 A;  2QJK C;  4QDF A;  3H1L E; 
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