1O7M | Genus

Total Genus 165

Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	165
sequence length	447
structure length	447
Chain Sequence	MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT

Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__326055821838092__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__326055821838092__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/1O7M/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__326055821838092__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"326055821838092","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/1O7M/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__326055821838092__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase
source organism	Pseudomonas putida
publication title	Crystal Structure of Naphthalene Dioxygenase: Side-on Binding of Dioxygen to Iron pubmed doi rcsb
molecule keywords	NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
total genus	165
structure length	447
sequence length	447
ec nomenclature	ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date	2002-11-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00355	Rieske	Rieske [2Fe-2S] domain
A	PF00848	Ring_hydroxyl_A	Ring hydroxylating alpha subunit (catalytic domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	1o7mA02
3.90.380.10	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1	Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1	1o7mA01

3GTSA 4QDFB 3VMIA 2ZT9D 2GBWA 1FQTA 2XSOA 4QDFA 4NBHA 1NTKE 4HM4A 1L0LE 3H1KE 3H1LE 4NBAA 5KLVE 1PP9E 4NB8D 2D2CD 2NVGA 3GL2A 4P1BH 1WW9A 4NBDA 2QJPC 4P1CH 1VF5D 3TGUE 1Q90C 1P84E 1Z03A 5KKZC 4NB9A 3VMID 5KLIC 2HMOA 3DQYA 4NBHD 4QUQA 1EZVE 2E74D 4NBBA 1ZRTE 3EQQA 2IBZE 2XSHA 4NBAD 1NYKA 3GZYA 3H1HE 2XR8A 3GKQA 3GL0A 2BMOA 1RIEA 3FOUA 2QJYC 4HM1A 4NBDD 4QURA 2ZYLA 1VCKA 1L0NE 2HMKA 1SQXE 4HM2A 4NB9D 4HM0A 2QJKC 2E75D 3GKEA 2HMNA 4NBBD 3H1JE 3VCAA 1NTZE 2YFJA 3BCCE 1KB9E 1EG9A 2NUMA 3L72E 2NVEA 4EMJB 1O7HA 1UUWA 1PPJE 2HMLA 5AEWA 1Z02A 2B24A 3L70E 1O7PA 4QDCA 3VMHA 4NBGA 3VMGA 2GBXA 4NBFA 3GCFA 2FYUE 1ULJA 2JO6A 4HM5A 1NTME 1UUVA 2YIUC 2HMMA 3GCEA 4H13D 3N0QA 1SQBE 4OGQD 3VMHD 2DE5A 4NBGD 3VMGD 4NBFD 1O7MA 1BCCE 4U3FE 4H44D 2JZAA 2YVJB 1VM9A 4QCKA 1SJGA 2FYNC 3L73E 3D89A 2I7FA 4NBCA 4HJLA 1G8JB 2DE5D 1SQPE 5BOKA 2E4PA 1O7NA 1SQVE 2XRXA 1KYOE 1RFSA 3AZCA 3C0DA 1O7WA 3H1IE 1NDOA 4HM3A 4HKVA 3GZXA 2BMRA 5HL4A 4NBCD 1O7GA 3CWBE 1NU1E 4HM8A 2NWFA 2A06E 2E76D 4NBEA 1BE3E 3L71E 2DE6A 5CXMA 1ULIA 3GTEA 2DE7A 4PV1D 4QDDA 3GB4A 2CKFA 3CXHE 4AAYB 2HMJA 3GOBA 1G8KB 2NVFA 3L75E 1JM1A 2YFLA 4HM7A 1SQQE 1WQLA 2E4QA 5AEUA 4NBED 2Q3WA 4HM6A 3EN1A 2NUKA 2BCCE 2DE6D 2DE7D 2B1XA 3L74E 4H0LD 3CX5E 4PD4E 4NB8A 4QUPA 1Z01A 3VCPA 4AIVA 2QPZA 2YFIA 2BMQA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3GTS A;  4QDF B;  3VMI A;  2ZT9 D;  2GBW A;  1FQT A;  2XSO A;  4QDF A;  4NBH A;  1NTK E;  4HM4 A;  1L0L E;  3H1K E;  3H1L E;  4NBA A;  5KLV E;  1PP9 E;  4NB8 D;  2D2C D;  2NVG A;  3GL2 A;  4P1B H;  1WW9 A;  4NBD A;  2QJP C;  4P1C H;  1VF5 D;  3TGU E;  1Q90 C;  1P84 E;  1Z03 A;  5KKZ C;  4NB9 A;  3VMI D;  5KLI C;  2HMO A;  3DQY A;  4NBH D;  4QUQ A;  1EZV E;  2E74 D;  4NBB A;  1ZRT E;  3EQQ A;  2IBZ E;  2XSH A;  4NBA D;  1NYK A;  3GZY A;  3H1H E;  2XR8 A;  3GKQ A;  3GL0 A;  2BMO A;  1RIE A;  3FOU A;  2QJY C;  4HM1 A;  4NBD D;  4QUR A;  2ZYL A;  1VCK A;  1L0N E;  2HMK A;  1SQX E;  4HM2 A;  4NB9 D;  4HM0 A;  2QJK C;  2E75 D;  3GKE A;  2HMN A;  4NBB D;  3H1J E;  3VCA A;  1NTZ E;  2YFJ A;  3BCC E;  1KB9 E;  1EG9 A;  2NUM A;  3L72 E;  2NVE A;  4EMJ B;  1O7H A;  1UUW A;  1PPJ E;  2HML A;  5AEW A;  1Z02 A;  2B24 A;  3L70 E;  1O7P A;  4QDC A;  3VMH A;  4NBG A;  3VMG A;  2GBX A;  4NBF A;  3GCF A;  2FYU E;  1ULJ A;  2JO6 A;  4HM5 A;  1NTM E;  1UUV A;  2YIU C;  2HMM A;  3GCE A;  4H13 D;  3N0Q A;  1SQB E;  4OGQ D;  3VMH D;  2DE5 A;  4NBG D;  3VMG D;  4NBF D;  1O7M A;  1BCC E;  4U3F E;  4H44 D;  2JZA A;  2YVJ B;  1VM9 A;  4QCK A;  1SJG A;  2FYN C;  3L73 E;  3D89 A;  2I7F A;  4NBC A;  4HJL A;  1G8J B;  2DE5 D;  1SQP E;  5BOK A;  2E4P A;  1O7N A;  1SQV E;  2XRX A;  1KYO E;  1RFS A;  3AZC A;  3C0D A;  1O7W A;  3H1I E;  1NDO A;  4HM3 A;  4HKV A;  3GZX A;  2BMR A;  5HL4 A;  4NBC D;  1O7G A;  3CWB E;  1NU1 E;  4HM8 A;  2NWF A;  2A06 E;  2E76 D;  4NBE A;  1BE3 E;  3L71 E;  2DE6 A;  5CXM A;  1ULI A;  3GTE A;  2DE7 A;  4PV1 D;  4QDD A;  3GB4 A;  2CKF A;  3CXH E;  4AAY B;  2HMJ A;  3GOB A;  1G8K B;  2NVF A;  3L75 E;  1JM1 A;  2YFL A;  4HM7 A;  1SQQ E;  1WQL A;  2E4Q A;  5AEU A;  4NBE D;  2Q3W A;  4HM6 A;  3EN1 A;  2NUK A;  2BCC E;  2DE6 D;  2DE7 D;  2B1X A;  3L74 E;  4H0L D;  3CX5 E;  4PD4 E;  4NB8 A;  4QUP A;  1Z01 A;  3VCP A;  4AIV A;  2QPZ A;  2YFI A;  2BMQ A; 
#chains in the Genus database with same CATH topology
 3GTS A;  4QDF B;  3VMI A;  2ZT9 D;  2GBW A;  1FQT A;  2XSO A;  4QDF A;  4NBH A;  1NTK E;  4HM4 A;  1L0L E;  3H1K E;  3H1L E;  4NBA A;  5KLV E;  1PP9 E;  4NB8 D;  2D2C D;  2NVG A;  3GL2 A;  4P1B H;  1WW9 A;  4NBD A;  2QJP C;  4P1C H;  1VF5 D;  3TGU E;  1Q90 C;  1P84 E;  1Z03 A;  5KKZ C;  4NB9 A;  3VMI D;  5KLI C;  2HMO A;  3DQY A;  4NBH D;  4QUQ A;  1EZV E;  2E74 D;  4NBB A;  1ZRT E;  3EQQ A;  2IBZ E;  2XSH A;  4NBA D;  1NYK A;  3GZY A;  3H1H E;  2XR8 A;  3GKQ A;  3GL0 A;  2BMO A;  1RIE A;  3FOU A;  2QJY C;  4HM1 A;  4NBD D;  4QUR A;  2ZYL A;  1VCK A;  1L0N E;  2HMK A;  1SQX E;  4HM2 A;  4NB9 D;  4HM0 A;  2QJK C;  2E75 D;  3GKE A;  2HMN A;  4NBB D;  3H1J E;  3VCA A;  1NTZ E;  2YFJ A;  3BCC E;  1KB9 E;  1EG9 A;  2NUM A;  3L72 E;  2NVE A;  4EMJ B;  1O7H A;  1UUW A;  1PPJ E;  2HML A;  5AEW A;  1Z02 A;  2B24 A;  3L70 E;  1O7P A;  4QDC A;  3VMH A;  4NBG A;  3VMG A;  2GBX A;  4NBF A;  3GCF A;  2FYU E;  1ULJ A;  2JO6 A;  4HM5 A;  1NTM E;  1UUV A;  2YIU C;  2HMM A;  3GCE A;  4H13 D;  3N0Q A;  1SQB E;  4OGQ D;  3VMH D;  2DE5 A;  4NBG D;  3VMG D;  4NBF D;  1O7M A;  1BCC E;  4U3F E;  4H44 D;  2JZA A;  2YVJ B;  1VM9 A;  4QCK A;  1SJG A;  2FYN C;  3L73 E;  3D89 A;  2I7F A;  4NBC A;  4HJL A;  1G8J B;  2DE5 D;  1SQP E;  5BOK A;  2E4P A;  1O7N A;  1SQV E;  2XRX A;  1KYO E;  1RFS A;  3AZC A;  3C0D A;  1O7W A;  3H1I E;  1NDO A;  4HM3 A;  4HKV A;  3GZX A;  2BMR A;  5HL4 A;  4NBC D;  1O7G A;  3CWB E;  1NU1 E;  4HM8 A;  2NWF A;  2A06 E;  2E76 D;  4NBE A;  1BE3 E;  3L71 E;  2DE6 A;  5CXM A;  1ULI A;  3GTE A;  2DE7 A;  4PV1 D;  4QDD A;  3GB4 A;  2CKF A;  3CXH E;  4AAY B;  2HMJ A;  3GOB A;  1G8K B;  2NVF A;  3L75 E;  1JM1 A;  2YFL A;  4HM7 A;  1SQQ E;  1WQL A;  2E4Q A;  5AEU A;  4NBE D;  2Q3W A;  4HM6 A;  3EN1 A;  2NUK A;  2BCC E;  2DE6 D;  2DE7 D;  2B1X A;  3L74 E;  4H0L D;  3CX5 E;  4PD4 E;  4NB8 A;  4QUP A;  1Z01 A;  3VCP A;  4AIV A;  2QPZ A;  2YFI A;  2BMQ A; 
#chains in the Genus database with same CATH homology
 3GTS A;  4QDF B;  3VMI A;  2ZT9 D;  2GBW A;  1FQT A;  2XSO A;  4QDF A;  4NBH A;  1NTK E;  4HM4 A;  1L0L E;  3H1K E;  3H1L E;  4NBA A;  5KLV E;  1PP9 E;  4NB8 D;  2D2C D;  2NVG A;  3GL2 A;  4P1B H;  1WW9 A;  4NBD A;  2QJP C;  4P1C H;  1VF5 D;  3TGU E;  1Q90 C;  1P84 E;  1Z03 A;  5KKZ C;  4NB9 A;  3VMI D;  5KLI C;  2HMO A;  3DQY A;  4NBH D;  4QUQ A;  1EZV E;  2E74 D;  4NBB A;  1ZRT E;  3EQQ A;  2IBZ E;  2XSH A;  4NBA D;  1NYK A;  3GZY A;  3H1H E;  2XR8 A;  3GKQ A;  3GL0 A;  2BMO A;  1RIE A;  3FOU A;  2QJY C;  4HM1 A;  4NBD D;  4QUR A;  2ZYL A;  1VCK A;  1L0N E;  2HMK A;  1SQX E;  4HM2 A;  4NB9 D;  4HM0 A;  2QJK C;  2E75 D;  3GKE A;  2HMN A;  4NBB D;  3H1J E;  3VCA A;  1NTZ E;  2YFJ A;  3BCC E;  1KB9 E;  1EG9 A;  2NUM A;  3L72 E;  2NVE A;  4EMJ B;  1O7H A;  1UUW A;  1PPJ E;  2HML A;  5AEW A;  1Z02 A;  2B24 A;  3L70 E;  1O7P A;  4QDC A;  3VMH A;  4NBG A;  3VMG A;  2GBX A;  4NBF A;  3GCF A;  2FYU E;  1ULJ A;  2JO6 A;  4HM5 A;  1NTM E;  1UUV A;  2YIU C;  2HMM A;  3GCE A;  4H13 D;  3N0Q A;  1SQB E;  4OGQ D;  3VMH D;  2DE5 A;  4NBG D;  3VMG D;  4NBF D;  1O7M A;  1BCC E;  4U3F E;  4H44 D;  2JZA A;  2YVJ B;  1VM9 A;  4QCK A;  1SJG A;  2FYN C;  3L73 E;  3D89 A;  2I7F A;  4NBC A;  4HJL A;  1G8J B;  2DE5 D;  1SQP E;  5BOK A;  2E4P A;  1O7N A;  1SQV E;  2XRX A;  1KYO E;  1RFS A;  3AZC A;  3C0D A;  1O7W A;  3H1I E;  1NDO A;  4HM3 A;  4HKV A;  3GZX A;  2BMR A;  5HL4 A;  4NBC D;  1O7G A;  3CWB E;  1NU1 E;  4HM8 A;  2NWF A;  2A06 E;  2E76 D;  4NBE A;  1BE3 E;  3L71 E;  2DE6 A;  5CXM A;  1ULI A;  3GTE A;  2DE7 A;  4PV1 D;  4QDD A;  3GB4 A;  2CKF A;  3CXH E;  4AAY B;  2HMJ A;  3GOB A;  1G8K B;  2NVF A;  3L75 E;  1JM1 A;  2YFL A;  4HM7 A;  1SQQ E;  1WQL A;  2E4Q A;  5AEU A;  4NBE D;  2Q3W A;  4HM6 A;  3EN1 A;  2NUK A;  2BCC E;  2DE6 D;  2DE7 D;  2B1X A;  3L74 E;  4H0L D;  3CX5 E;  4PD4 E;  4NB8 A;  4QUP A;  1Z01 A;  3VCP A;  4AIV A;  2QPZ A;  2YFI A;  2BMQ A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1O7MA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations