1O7NA

Naphthalene 1,2-dioxygenase, ternary complex with dioxygen and indole
Total Genus 162
50100150200250300350400020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
50100150200250300350400400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Pseudomonas putida
publication title Crystal Structure of Naphthalene Dioxygenase: Side-on Binding of Dioxygen to Iron
pubmed doi rcsb
molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
total genus 162
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2002-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1o7nA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1o7nA01
2E76D 2HMOA 2QJKC 3VMID 4NBGA 4QDCA 1JM1A 2GBWA 1O7GA 1NTME 2GBXA 3GKEA 3GCFA 2FYUE 4U3FE 1EZVE 4NBFD 4NBHD 3VMGD 4EMJB 3H1LE 4HM2A 1BE3E 2B24A 1P84E 1ULIA 2E4QA 2HMKA 3H1IE 2NVEA 3DQYA 4QDDA 3VMHA 1G8JB 4NBED 1Q90C 4QURA 3GZYA 4NBCD 2DE7A 2A06E 4P1BH 3GCEA 4QUQA 1NTKE 2NVGA 4PV1D 2JO6A 2IBZE 4P1CH 1RFSA 3N0QA 2BCCE 4NBDA 2B1XA 1SQPE 4H13D 2DE5D 1NTZE 2DE6D 4HJLA 4HM5A 4QCKA 2QJPC 2YVJB 1VF5D 2ZT9D 4NB8A 4NBBA 3VCAA 4HM3A 1Z01A 2HMLA 5AEUA 4AAYB 2FYNC 2NVFA 3GB4A 3VMHD 5HL4A 4HM1A 2E75D 2DE7D 2XR8A 1SJGA 3L74E 3GTEA 2E74D 1KB9E 4AIVA 5AEWA 1O7WA 4OGQD 4NB9A 1L0LE 3BCCE 5KLIC 1SQVE 3D89A 2XSOA 2YFLA 1L0NE 2D2CD 3H1KE 3H1HE 2QJYC 2BMQA 3CWBE 5BOKA 4NBGD 1O7MA 2ZYLA 2BMRA 3L73E 1O7PA 4NBBD 4HM0A 1BCCE 4QDFB 3VMIA 2E4PA 2NUKA 4NBAA 1RIEA 2HMMA 2NWFA 3GL2A 2YIUC 1PPJE 2HMJA 1KYOE 2XRXA 1NDOA 4NBHA 3VMGA 2JZAA 4QDFA 4HM6A 3TGUE 4PD4E 1Z02A 1SQXE 4H44D 4NBEA 4NBCA 1EG9A 3L75E 3L71E 3GZXA 2I7FA 3AZCA 1O7NA 4NBDD 3VCPA 1VCKA 1WQLA 1PP9E 2XSHA 1O7HA 5CXMA 3CX5E 2CKFA 3C0DA 5KKZC 3GTSA 3GOBA 3L72E 4NB8D 4NBAD 3H1JE 2HMNA 4H0LD 5KLVE 2DE5A 2DE6A 3EQQA 1NU1E 2YFJA 1FQTA 3FOUA 4QUPA 2Q3WA 3L70E 3CXHE 1ULJA 4HKVA 1UUVA 4HM8A 1VM9A 4NBFA 3GKQA 1Z03A 1NYKA 2YFIA 1WW9A 4NB9D 4HM7A 2QPZA 2NUMA 4HM4A 1SQQE 3EN1A 3GL0A 1UUWA 2BMOA 1ZRTE 1G8KB 1SQBE
chains in the Genus database with same CATH superfamily
2E76D 2HMOA 2QJKC 3VMID 4NBGA 4QDCA 1JM1A 2GBWA 1O7GA 1NTME 2GBXA 3GKEA 3GCFA 2FYUE 4U3FE 1EZVE 4NBFD 4NBHD 3VMGD 4EMJB 3H1LE 4HM2A 1BE3E 2B24A 1P84E 1ULIA 2E4QA 2HMKA 3H1IE 2NVEA 3DQYA 4QDDA 3VMHA 1G8JB 4NBED 1Q90C 4QURA 3GZYA 4NBCD 2DE7A 2A06E 4P1BH 3GCEA 4QUQA 1NTKE 2NVGA 4PV1D 2JO6A 2IBZE 4P1CH 1RFSA 3N0QA 2BCCE 4NBDA 2B1XA 1SQPE 4H13D 2DE5D 1NTZE 2DE6D 4HJLA 4HM5A 4QCKA 2QJPC 2YVJB 1VF5D 2ZT9D 4NB8A 4NBBA 3VCAA 4HM3A 1Z01A 2HMLA 5AEUA 4AAYB 2FYNC 2NVFA 3GB4A 3VMHD 5HL4A 4HM1A 2E75D 2DE7D 2XR8A 1SJGA 3L74E 3GTEA 2E74D 1KB9E 4AIVA 5AEWA 1O7WA 4OGQD 4NB9A 1L0LE 3BCCE 5KLIC 1SQVE 3D89A 2XSOA 2YFLA 1L0NE 2D2CD 3H1KE 3H1HE 2QJYC 2BMQA 3CWBE 5BOKA 4NBGD 1O7MA 2ZYLA 2BMRA 3L73E 1O7PA 4NBBD 4HM0A 1BCCE 4QDFB 3VMIA 2E4PA 2NUKA 4NBAA 1RIEA 2HMMA 2NWFA 3GL2A 2YIUC 1PPJE 2HMJA 1KYOE 2XRXA 1NDOA 4NBHA 3VMGA 2JZAA 4QDFA 4HM6A 3TGUE 4PD4E 1Z02A 1SQXE 4H44D 4NBEA 4NBCA 1EG9A 3L75E 3L71E 3GZXA 2I7FA 3AZCA 1O7NA 4NBDD 3VCPA 1VCKA 1WQLA 1PP9E 2XSHA 1O7HA 5CXMA 3CX5E 2CKFA 3C0DA 5KKZC 3GTSA 3GOBA 3L72E 4NB8D 4NBAD 3H1JE 2HMNA 4H0LD 5KLVE 2DE5A 2DE6A 3EQQA 1NU1E 2YFJA 1FQTA 3FOUA 4QUPA 2Q3WA 3L70E 3CXHE 1ULJA 4HKVA 1UUVA 4HM8A 1VM9A 4NBFA 3GKQA 1Z03A 1NYKA 2YFIA 1WW9A 4NB9D 4HM7A 2QPZA 2NUMA 4HM4A 1SQQE 3EN1A 3GL0A 1UUWA 2BMOA 1ZRTE 1G8KB 1SQBE
chains in the Genus database with same CATH topology
2E76D 2HMOA 2QJKC 3VMID 4NBGA 4QDCA 1JM1A 2GBWA 1O7GA 1NTME 2GBXA 3GKEA 3GCFA 2FYUE 4U3FE 1EZVE 4NBFD 4NBHD 3VMGD 4EMJB 3H1LE 4HM2A 1BE3E 2B24A 1P84E 1ULIA 2E4QA 2HMKA 3H1IE 2NVEA 3DQYA 4QDDA 3VMHA 1G8JB 4NBED 1Q90C 4QURA 3GZYA 4NBCD 2DE7A 2A06E 4P1BH 3GCEA 4QUQA 1NTKE 2NVGA 4PV1D 2JO6A 2IBZE 4P1CH 1RFSA 3N0QA 2BCCE 4NBDA 2B1XA 1SQPE 4H13D 2DE5D 1NTZE 2DE6D 4HJLA 4HM5A 4QCKA 2QJPC 2YVJB 1VF5D 2ZT9D 4NB8A 4NBBA 3VCAA 4HM3A 1Z01A 2HMLA 5AEUA 4AAYB 2FYNC 2NVFA 3GB4A 3VMHD 5HL4A 4HM1A 2E75D 2DE7D 2XR8A 1SJGA 3L74E 3GTEA 2E74D 1KB9E 4AIVA 5AEWA 1O7WA 4OGQD 4NB9A 1L0LE 3BCCE 5KLIC 1SQVE 3D89A 2XSOA 2YFLA 1L0NE 2D2CD 3H1KE 3H1HE 2QJYC 2BMQA 3CWBE 5BOKA 4NBGD 1O7MA 2ZYLA 2BMRA 3L73E 1O7PA 4NBBD 4HM0A 1BCCE 4QDFB 3VMIA 2E4PA 2NUKA 4NBAA 1RIEA 2HMMA 2NWFA 3GL2A 2YIUC 1PPJE 2HMJA 1KYOE 2XRXA 1NDOA 4NBHA 3VMGA 2JZAA 4QDFA 4HM6A 3TGUE 4PD4E 1Z02A 1SQXE 4H44D 4NBEA 4NBCA 1EG9A 3L75E 3L71E 3GZXA 2I7FA 3AZCA 1O7NA 4NBDD 3VCPA 1VCKA 1WQLA 1PP9E 2XSHA 1O7HA 5CXMA 3CX5E 2CKFA 3C0DA 5KKZC 3GTSA 3GOBA 3L72E 4NB8D 4NBAD 3H1JE 2HMNA 4H0LD 5KLVE 2DE5A 2DE6A 3EQQA 1NU1E 2YFJA 1FQTA 3FOUA 4QUPA 2Q3WA 3L70E 3CXHE 1ULJA 4HKVA 1UUVA 4HM8A 1VM9A 4NBFA 3GKQA 1Z03A 1NYKA 2YFIA 1WW9A 4NB9D 4HM7A 2QPZA 2NUMA 4HM4A 1SQQE 3EN1A 3GL0A 1UUWA 2BMOA 1ZRTE 1G8KB 1SQBE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E76 D;  2HMO A;  2QJK C;  3VMI D;  4NBG A;  4QDC A;  1JM1 A;  2GBW A;  1O7G A;  1NTM E;  2GBX A;  3GKE A;  3GCF A;  2FYU E;  4U3F E;  1EZV E;  4NBF D;  4NBH D;  3VMG D;  4EMJ B;  3H1L E;  4HM2 A;  1BE3 E;  2B24 A;  1P84 E;  1ULI A;  2E4Q A;  2HMK A;  3H1I E;  2NVE A;  3DQY A;  4QDD A;  3VMH A;  1G8J B;  4NBE D;  1Q90 C;  4QUR A;  3GZY A;  4NBC D;  2DE7 A;  2A06 E;  4P1B H;  3GCE A;  4QUQ A;  1NTK E;  2NVG A;  4PV1 D;  2JO6 A;  2IBZ E;  4P1C H;  1RFS A;  3N0Q A;  2BCC E;  4NBD A;  2B1X A;  1SQP E;  4H13 D;  2DE5 D;  1NTZ E;  2DE6 D;  4HJL A;  4HM5 A;  4QCK A;  2QJP C;  2YVJ B;  1VF5 D;  2ZT9 D;  4NB8 A;  4NBB A;  3VCA A;  4HM3 A;  1Z01 A;  2HML A;  5AEU A;  4AAY B;  2FYN C;  2NVF A;  3GB4 A;  3VMH D;  5HL4 A;  4HM1 A;  2E75 D;  2DE7 D;  2XR8 A;  1SJG A;  3L74 E;  3GTE A;  2E74 D;  1KB9 E;  4AIV A;  5AEW A;  1O7W A;  4OGQ D;  4NB9 A;  1L0L E;  3BCC E;  5KLI C;  1SQV E;  3D89 A;  2XSO A;  2YFL A;  1L0N E;  2D2C D;  3H1K E;  3H1H E;  2QJY C;  2BMQ A;  3CWB E;  5BOK A;  4NBG D;  1O7M A;  2ZYL A;  2BMR A;  3L73 E;  1O7P A;  4NBB D;  4HM0 A;  1BCC E;  4QDF B;  3VMI A;  2E4P A;  2NUK A;  4NBA A;  1RIE A;  2HMM A;  2NWF A;  3GL2 A;  2YIU C;  1PPJ E;  2HMJ A;  1KYO E;  2XRX A;  1NDO A;  4NBH A;  3VMG A;  2JZA A;  4QDF A;  4HM6 A;  3TGU E;  4PD4 E;  1Z02 A;  1SQX E;  4H44 D;  4NBE A;  4NBC A;  1EG9 A;  3L75 E;  3L71 E;  3GZX A;  2I7F A;  3AZC A;  1O7N A;  4NBD D;  3VCP A;  1VCK A;  1WQL A;  1PP9 E;  2XSH A;  1O7H A;  5CXM A;  3CX5 E;  2CKF A;  3C0D A;  5KKZ C;  3GTS A;  3GOB A;  3L72 E;  4NB8 D;  4NBA D;  3H1J E;  2HMN A;  4H0L D;  5KLV E;  2DE5 A;  2DE6 A;  3EQQ A;  1NU1 E;  2YFJ A;  1FQT A;  3FOU A;  4QUP A;  2Q3W A;  3L70 E;  3CXH E;  1ULJ A;  4HKV A;  1UUV A;  4HM8 A;  1VM9 A;  4NBF A;  3GKQ A;  1Z03 A;  1NYK A;  2YFI A;  1WW9 A;  4NB9 D;  4HM7 A;  2QPZ A;  2NUM A;  4HM4 A;  1SQQ E;  3EN1 A;  3GL0 A;  1UUW A;  2BMO A;  1ZRT E;  1G8K B;  1SQB E; 
#chains in the Genus database with same CATH topology
 2E76 D;  2HMO A;  2QJK C;  3VMI D;  4NBG A;  4QDC A;  1JM1 A;  2GBW A;  1O7G A;  1NTM E;  2GBX A;  3GKE A;  3GCF A;  2FYU E;  4U3F E;  1EZV E;  4NBF D;  4NBH D;  3VMG D;  4EMJ B;  3H1L E;  4HM2 A;  1BE3 E;  2B24 A;  1P84 E;  1ULI A;  2E4Q A;  2HMK A;  3H1I E;  2NVE A;  3DQY A;  4QDD A;  3VMH A;  1G8J B;  4NBE D;  1Q90 C;  4QUR A;  3GZY A;  4NBC D;  2DE7 A;  2A06 E;  4P1B H;  3GCE A;  4QUQ A;  1NTK E;  2NVG A;  4PV1 D;  2JO6 A;  2IBZ E;  4P1C H;  1RFS A;  3N0Q A;  2BCC E;  4NBD A;  2B1X A;  1SQP E;  4H13 D;  2DE5 D;  1NTZ E;  2DE6 D;  4HJL A;  4HM5 A;  4QCK A;  2QJP C;  2YVJ B;  1VF5 D;  2ZT9 D;  4NB8 A;  4NBB A;  3VCA A;  4HM3 A;  1Z01 A;  2HML A;  5AEU A;  4AAY B;  2FYN C;  2NVF A;  3GB4 A;  3VMH D;  5HL4 A;  4HM1 A;  2E75 D;  2DE7 D;  2XR8 A;  1SJG A;  3L74 E;  3GTE A;  2E74 D;  1KB9 E;  4AIV A;  5AEW A;  1O7W A;  4OGQ D;  4NB9 A;  1L0L E;  3BCC E;  5KLI C;  1SQV E;  3D89 A;  2XSO A;  2YFL A;  1L0N E;  2D2C D;  3H1K E;  3H1H E;  2QJY C;  2BMQ A;  3CWB E;  5BOK A;  4NBG D;  1O7M A;  2ZYL A;  2BMR A;  3L73 E;  1O7P A;  4NBB D;  4HM0 A;  1BCC E;  4QDF B;  3VMI A;  2E4P A;  2NUK A;  4NBA A;  1RIE A;  2HMM A;  2NWF A;  3GL2 A;  2YIU C;  1PPJ E;  2HMJ A;  1KYO E;  2XRX A;  1NDO A;  4NBH A;  3VMG A;  2JZA A;  4QDF A;  4HM6 A;  3TGU E;  4PD4 E;  1Z02 A;  1SQX E;  4H44 D;  4NBE A;  4NBC A;  1EG9 A;  3L75 E;  3L71 E;  3GZX A;  2I7F A;  3AZC A;  1O7N A;  4NBD D;  3VCP A;  1VCK A;  1WQL A;  1PP9 E;  2XSH A;  1O7H A;  5CXM A;  3CX5 E;  2CKF A;  3C0D A;  5KKZ C;  3GTS A;  3GOB A;  3L72 E;  4NB8 D;  4NBA D;  3H1J E;  2HMN A;  4H0L D;  5KLV E;  2DE5 A;  2DE6 A;  3EQQ A;  1NU1 E;  2YFJ A;  1FQT A;  3FOU A;  4QUP A;  2Q3W A;  3L70 E;  3CXH E;  1ULJ A;  4HKV A;  1UUV A;  4HM8 A;  1VM9 A;  4NBF A;  3GKQ A;  1Z03 A;  1NYK A;  2YFI A;  1WW9 A;  4NB9 D;  4HM7 A;  2QPZ A;  2NUM A;  4HM4 A;  1SQQ E;  3EN1 A;  3GL0 A;  1UUW A;  2BMO A;  1ZRT E;  1G8K B;  1SQB E; 
#chains in the Genus database with same CATH homology
 2E76 D;  2HMO A;  2QJK C;  3VMI D;  4NBG A;  4QDC A;  1JM1 A;  2GBW A;  1O7G A;  1NTM E;  2GBX A;  3GKE A;  3GCF A;  2FYU E;  4U3F E;  1EZV E;  4NBF D;  4NBH D;  3VMG D;  4EMJ B;  3H1L E;  4HM2 A;  1BE3 E;  2B24 A;  1P84 E;  1ULI A;  2E4Q A;  2HMK A;  3H1I E;  2NVE A;  3DQY A;  4QDD A;  3VMH A;  1G8J B;  4NBE D;  1Q90 C;  4QUR A;  3GZY A;  4NBC D;  2DE7 A;  2A06 E;  4P1B H;  3GCE A;  4QUQ A;  1NTK E;  2NVG A;  4PV1 D;  2JO6 A;  2IBZ E;  4P1C H;  1RFS A;  3N0Q A;  2BCC E;  4NBD A;  2B1X A;  1SQP E;  4H13 D;  2DE5 D;  1NTZ E;  2DE6 D;  4HJL A;  4HM5 A;  4QCK A;  2QJP C;  2YVJ B;  1VF5 D;  2ZT9 D;  4NB8 A;  4NBB A;  3VCA A;  4HM3 A;  1Z01 A;  2HML A;  5AEU A;  4AAY B;  2FYN C;  2NVF A;  3GB4 A;  3VMH D;  5HL4 A;  4HM1 A;  2E75 D;  2DE7 D;  2XR8 A;  1SJG A;  3L74 E;  3GTE A;  2E74 D;  1KB9 E;  4AIV A;  5AEW A;  1O7W A;  4OGQ D;  4NB9 A;  1L0L E;  3BCC E;  5KLI C;  1SQV E;  3D89 A;  2XSO A;  2YFL A;  1L0N E;  2D2C D;  3H1K E;  3H1H E;  2QJY C;  2BMQ A;  3CWB E;  5BOK A;  4NBG D;  1O7M A;  2ZYL A;  2BMR A;  3L73 E;  1O7P A;  4NBB D;  4HM0 A;  1BCC E;  4QDF B;  3VMI A;  2E4P A;  2NUK A;  4NBA A;  1RIE A;  2HMM A;  2NWF A;  3GL2 A;  2YIU C;  1PPJ E;  2HMJ A;  1KYO E;  2XRX A;  1NDO A;  4NBH A;  3VMG A;  2JZA A;  4QDF A;  4HM6 A;  3TGU E;  4PD4 E;  1Z02 A;  1SQX E;  4H44 D;  4NBE A;  4NBC A;  1EG9 A;  3L75 E;  3L71 E;  3GZX A;  2I7F A;  3AZC A;  1O7N A;  4NBD D;  3VCP A;  1VCK A;  1WQL A;  1PP9 E;  2XSH A;  1O7H A;  5CXM A;  3CX5 E;  2CKF A;  3C0D A;  5KKZ C;  3GTS A;  3GOB A;  3L72 E;  4NB8 D;  4NBA D;  3H1J E;  2HMN A;  4H0L D;  5KLV E;  2DE5 A;  2DE6 A;  3EQQ A;  1NU1 E;  2YFJ A;  1FQT A;  3FOU A;  4QUP A;  2Q3W A;  3L70 E;  3CXH E;  1ULJ A;  4HKV A;  1UUV A;  4HM8 A;  1VM9 A;  4NBF A;  3GKQ A;  1Z03 A;  1NYK A;  2YFI A;  1WW9 A;  4NB9 D;  4HM7 A;  2QPZ A;  2NUM A;  4HM4 A;  1SQQ E;  3EN1 A;  3GL0 A;  1UUW A;  2BMO A;  1ZRT E;  1G8K B;  1SQB E; 
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