1O7P | Genus

Total Genus 159

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	159
sequence length	447
structure length	447
Chain Sequence	MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase
source organism	Pseudomonas putida
publication title	Crystal Structure of Naphthalene Dioxygenase: Side-on Binding of Dioxygen to Iron pubmed doi rcsb
molecule keywords	NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
total genus	159
structure length	447
sequence length	447
ec nomenclature	ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date	2002-11-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00355	Rieske	Rieske [2Fe-2S] domain
A	PF00848	Ring_hydroxyl_A	Ring hydroxylating alpha subunit (catalytic domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	1o7pA02
3.90.380.10	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1	Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1	1o7pA01

1KB9E 4QDDA 2NWFA 2NUKA 2I7FA 2BMQA 1BE3E 1FQTA 4PV1D 1RFSA 3VMHD 4HJLA 1Z01A 2XRXA 2QPZA 2E4PA 4OGQD 3C0DA 4QCKA 4NBEA 1UUWA 1NTME 2YVJB 4HKVA 1BCCE 3GTEA 3VMID 2QJPC 5KLIC 1PP9E 4HM0A 2E74D 4QURA 2QJYC 4H13D 4NBDD 4NB8D 1NTKE 2GBXA 2IBZE 3EN1A 3GL2A 2BMOA 4NBAA 4NB9A 1SQVE 1EZVE 3GCEA 2FYNC 3H1LE 2XSOA 2Q3WA 3BCCE 5BOKA 3VMGD 1O7MA 1Q90C 4NBBD 2E4QA 2HMLA 3CXHE 3DQYA 3GTSA 3GCFA 1O7GA 3GL0A 3H1JE 3N0QA 4NBGA 3GOBA 1ZRTE 4QDFA 3GB4A 1VF5D 2NUMA 4HM4A 1VM9A 2B1XA 2D2CD 2NVGA 4P1CH 5CXMA 3H1KE 3GKEA 4P1BH 2DE6A 1RIEA 4HM2A 1NTZE 4HM5A 2DE5D 3D89A 5AEUA 4NBFD 2CKFA 1SQPE 4H0LD 4NB9D 1O7WA 2YFLA 2NVFA 1WW9A 2HMKA 1G8KB 2BMRA 1NDOA 3VCAA 2A06E 2GBWA 3CX5E 4AIVA 5KLVE 3AZCA 1SQXE 2E75D 3L71E 2JZAA 2HMNA 4HM7A 2HMJA 4NBED 4HM1A 4U3FE 3FOUA 2YIUC 2DE7A 2YFJA 3L75E 4NBCA 2ZYLA 1L0NE 5AEWA 2HMOA 1G8JB 3CWBE 1EG9A 3TGUE 1SJGA 1UUVA 3H1HE 1WQLA 2JO6A 4AAYB 3VCPA 1NYKA 2ZT9D 4PD4E 4NBAD 4NBHA 1SQBE 2HMMA 1SQQE 2BCCE 1ULIA 2FYUE 1O7HA 1L0LE 3L70E 1P84E 3L72E 4QUQA 3VMGA 4NBBA 1JM1A 4HM6A 4EMJB 3VMHA 1ULJA 2NVEA 1KYOE 1NU1E 2QJKC 4H44D 5KKZC 2DE7D 3L74E 1O7NA 4NBGD 1Z03A 4HM3A 3GKQA 3EQQA 3GZYA 4HM8A 2YFIA 3GZXA 4NBCD 3VMIA 1Z02A 2E76D 3L73E 4QDFB 2XSHA 4QUPA 1PPJE 2B24A 3H1IE 2DE6D 4QDCA 4NBDA 2DE5A 1O7PA 2XR8A 4NBFA 4NB8A 1VCKA 4NBHD 5HL4A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1KB9 E;  4QDD A;  2NWF A;  2NUK A;  2I7F A;  2BMQ A;  1BE3 E;  1FQT A;  4PV1 D;  1RFS A;  3VMH D;  4HJL A;  1Z01 A;  2XRX A;  2QPZ A;  2E4P A;  4OGQ D;  3C0D A;  4QCK A;  4NBE A;  1UUW A;  1NTM E;  2YVJ B;  4HKV A;  1BCC E;  3GTE A;  3VMI D;  2QJP C;  5KLI C;  1PP9 E;  4HM0 A;  2E74 D;  4QUR A;  2QJY C;  4H13 D;  4NBD D;  4NB8 D;  1NTK E;  2GBX A;  2IBZ E;  3EN1 A;  3GL2 A;  2BMO A;  4NBA A;  4NB9 A;  1SQV E;  1EZV E;  3GCE A;  2FYN C;  3H1L E;  2XSO A;  2Q3W A;  3BCC E;  5BOK A;  3VMG D;  1O7M A;  1Q90 C;  4NBB D;  2E4Q A;  2HML A;  3CXH E;  3DQY A;  3GTS A;  3GCF A;  1O7G A;  3GL0 A;  3H1J E;  3N0Q A;  4NBG A;  3GOB A;  1ZRT E;  4QDF A;  3GB4 A;  1VF5 D;  2NUM A;  4HM4 A;  1VM9 A;  2B1X A;  2D2C D;  2NVG A;  4P1C H;  5CXM A;  3H1K E;  3GKE A;  4P1B H;  2DE6 A;  1RIE A;  4HM2 A;  1NTZ E;  4HM5 A;  2DE5 D;  3D89 A;  5AEU A;  4NBF D;  2CKF A;  1SQP E;  4H0L D;  4NB9 D;  1O7W A;  2YFL A;  2NVF A;  1WW9 A;  2HMK A;  1G8K B;  2BMR A;  1NDO A;  3VCA A;  2A06 E;  2GBW A;  3CX5 E;  4AIV A;  5KLV E;  3AZC A;  1SQX E;  2E75 D;  3L71 E;  2JZA A;  2HMN A;  4HM7 A;  2HMJ A;  4NBE D;  4HM1 A;  4U3F E;  3FOU A;  2YIU C;  2DE7 A;  2YFJ A;  3L75 E;  4NBC A;  2ZYL A;  1L0N E;  5AEW A;  2HMO A;  1G8J B;  3CWB E;  1EG9 A;  3TGU E;  1SJG A;  1UUV A;  3H1H E;  1WQL A;  2JO6 A;  4AAY B;  3VCP A;  1NYK A;  2ZT9 D;  4PD4 E;  4NBA D;  4NBH A;  1SQB E;  2HMM A;  1SQQ E;  2BCC E;  1ULI A;  2FYU E;  1O7H A;  1L0L E;  3L70 E;  1P84 E;  3L72 E;  4QUQ A;  3VMG A;  4NBB A;  1JM1 A;  4HM6 A;  4EMJ B;  3VMH A;  1ULJ A;  2NVE A;  1KYO E;  1NU1 E;  2QJK C;  4H44 D;  5KKZ C;  2DE7 D;  3L74 E;  1O7N A;  4NBG D;  1Z03 A;  4HM3 A;  3GKQ A;  3EQQ A;  3GZY A;  4HM8 A;  2YFI A;  3GZX A;  4NBC D;  3VMI A;  1Z02 A;  2E76 D;  3L73 E;  4QDF B;  2XSH A;  4QUP A;  1PPJ E;  2B24 A;  3H1I E;  2DE6 D;  4QDC A;  4NBD A;  2DE5 A;  1O7P A;  2XR8 A;  4NBF A;  4NB8 A;  1VCK A;  4NBH D;  5HL4 A; 
#chains in the Genus database with same CATH topology
 1KB9 E;  4QDD A;  2NWF A;  2NUK A;  2I7F A;  2BMQ A;  1BE3 E;  1FQT A;  4PV1 D;  1RFS A;  3VMH D;  4HJL A;  1Z01 A;  2XRX A;  2QPZ A;  2E4P A;  4OGQ D;  3C0D A;  4QCK A;  4NBE A;  1UUW A;  1NTM E;  2YVJ B;  4HKV A;  1BCC E;  3GTE A;  3VMI D;  2QJP C;  5KLI C;  1PP9 E;  4HM0 A;  2E74 D;  4QUR A;  2QJY C;  4H13 D;  4NBD D;  4NB8 D;  1NTK E;  2GBX A;  2IBZ E;  3EN1 A;  3GL2 A;  2BMO A;  4NBA A;  4NB9 A;  1SQV E;  1EZV E;  3GCE A;  2FYN C;  3H1L E;  2XSO A;  2Q3W A;  3BCC E;  5BOK A;  3VMG D;  1O7M A;  1Q90 C;  4NBB D;  2E4Q A;  2HML A;  3CXH E;  3DQY A;  3GTS A;  3GCF A;  1O7G A;  3GL0 A;  3H1J E;  3N0Q A;  4NBG A;  3GOB A;  1ZRT E;  4QDF A;  3GB4 A;  1VF5 D;  2NUM A;  4HM4 A;  1VM9 A;  2B1X A;  2D2C D;  2NVG A;  4P1C H;  5CXM A;  3H1K E;  3GKE A;  4P1B H;  2DE6 A;  1RIE A;  4HM2 A;  1NTZ E;  4HM5 A;  2DE5 D;  3D89 A;  5AEU A;  4NBF D;  2CKF A;  1SQP E;  4H0L D;  4NB9 D;  1O7W A;  2YFL A;  2NVF A;  1WW9 A;  2HMK A;  1G8K B;  2BMR A;  1NDO A;  3VCA A;  2A06 E;  2GBW A;  3CX5 E;  4AIV A;  5KLV E;  3AZC A;  1SQX E;  2E75 D;  3L71 E;  2JZA A;  2HMN A;  4HM7 A;  2HMJ A;  4NBE D;  4HM1 A;  4U3F E;  3FOU A;  2YIU C;  2DE7 A;  2YFJ A;  3L75 E;  4NBC A;  2ZYL A;  1L0N E;  5AEW A;  2HMO A;  1G8J B;  3CWB E;  1EG9 A;  3TGU E;  1SJG A;  1UUV A;  3H1H E;  1WQL A;  2JO6 A;  4AAY B;  3VCP A;  1NYK A;  2ZT9 D;  4PD4 E;  4NBA D;  4NBH A;  1SQB E;  2HMM A;  1SQQ E;  2BCC E;  1ULI A;  2FYU E;  1O7H A;  1L0L E;  3L70 E;  1P84 E;  3L72 E;  4QUQ A;  3VMG A;  4NBB A;  1JM1 A;  4HM6 A;  4EMJ B;  3VMH A;  1ULJ A;  2NVE A;  1KYO E;  1NU1 E;  2QJK C;  4H44 D;  5KKZ C;  2DE7 D;  3L74 E;  1O7N A;  4NBG D;  1Z03 A;  4HM3 A;  3GKQ A;  3EQQ A;  3GZY A;  4HM8 A;  2YFI A;  3GZX A;  4NBC D;  3VMI A;  1Z02 A;  2E76 D;  3L73 E;  4QDF B;  2XSH A;  4QUP A;  1PPJ E;  2B24 A;  3H1I E;  2DE6 D;  4QDC A;  4NBD A;  2DE5 A;  1O7P A;  2XR8 A;  4NBF A;  4NB8 A;  1VCK A;  4NBH D;  5HL4 A; 
#chains in the Genus database with same CATH homology
 1KB9 E;  4QDD A;  2NWF A;  2NUK A;  2I7F A;  2BMQ A;  1BE3 E;  1FQT A;  4PV1 D;  1RFS A;  3VMH D;  4HJL A;  1Z01 A;  2XRX A;  2QPZ A;  2E4P A;  4OGQ D;  3C0D A;  4QCK A;  4NBE A;  1UUW A;  1NTM E;  2YVJ B;  4HKV A;  1BCC E;  3GTE A;  3VMI D;  2QJP C;  5KLI C;  1PP9 E;  4HM0 A;  2E74 D;  4QUR A;  2QJY C;  4H13 D;  4NBD D;  4NB8 D;  1NTK E;  2GBX A;  2IBZ E;  3EN1 A;  3GL2 A;  2BMO A;  4NBA A;  4NB9 A;  1SQV E;  1EZV E;  3GCE A;  2FYN C;  3H1L E;  2XSO A;  2Q3W A;  3BCC E;  5BOK A;  3VMG D;  1O7M A;  1Q90 C;  4NBB D;  2E4Q A;  2HML A;  3CXH E;  3DQY A;  3GTS A;  3GCF A;  1O7G A;  3GL0 A;  3H1J E;  3N0Q A;  4NBG A;  3GOB A;  1ZRT E;  4QDF A;  3GB4 A;  1VF5 D;  2NUM A;  4HM4 A;  1VM9 A;  2B1X A;  2D2C D;  2NVG A;  4P1C H;  5CXM A;  3H1K E;  3GKE A;  4P1B H;  2DE6 A;  1RIE A;  4HM2 A;  1NTZ E;  4HM5 A;  2DE5 D;  3D89 A;  5AEU A;  4NBF D;  2CKF A;  1SQP E;  4H0L D;  4NB9 D;  1O7W A;  2YFL A;  2NVF A;  1WW9 A;  2HMK A;  1G8K B;  2BMR A;  1NDO A;  3VCA A;  2A06 E;  2GBW A;  3CX5 E;  4AIV A;  5KLV E;  3AZC A;  1SQX E;  2E75 D;  3L71 E;  2JZA A;  2HMN A;  4HM7 A;  2HMJ A;  4NBE D;  4HM1 A;  4U3F E;  3FOU A;  2YIU C;  2DE7 A;  2YFJ A;  3L75 E;  4NBC A;  2ZYL A;  1L0N E;  5AEW A;  2HMO A;  1G8J B;  3CWB E;  1EG9 A;  3TGU E;  1SJG A;  1UUV A;  3H1H E;  1WQL A;  2JO6 A;  4AAY B;  3VCP A;  1NYK A;  2ZT9 D;  4PD4 E;  4NBA D;  4NBH A;  1SQB E;  2HMM A;  1SQQ E;  2BCC E;  1ULI A;  2FYU E;  1O7H A;  1L0L E;  3L70 E;  1P84 E;  3L72 E;  4QUQ A;  3VMG A;  4NBB A;  1JM1 A;  4HM6 A;  4EMJ B;  3VMH A;  1ULJ A;  2NVE A;  1KYO E;  1NU1 E;  2QJK C;  4H44 D;  5KKZ C;  2DE7 D;  3L74 E;  1O7N A;  4NBG D;  1Z03 A;  4HM3 A;  3GKQ A;  3EQQ A;  3GZY A;  4HM8 A;  2YFI A;  3GZX A;  4NBC D;  3VMI A;  1Z02 A;  2E76 D;  3L73 E;  4QDF B;  2XSH A;  4QUP A;  1PPJ E;  2B24 A;  3H1I E;  2DE6 D;  4QDC A;  4NBD A;  2DE5 A;  1O7P A;  2XR8 A;  4NBF A;  4NB8 A;  1VCK A;  4NBH D;  5HL4 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1O7PA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations