1Q90C

Structure of the cytochrome b6f (plastohydroquinone : plastocyanin oxidoreductase) from chlamydomonas reinhardtii
Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
127
structure length
126
Chain Sequence
QAAKDALGNDIKAGEWLKTHLAGDRSLSQGLKGDPTYLIVTADSTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDVAEGLVTFSTWTETDFRTGLEPWWA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (115-120)AH1 (92-98)S1 (103-105)TI2 (120-123)TII2 (109-112)TII1 (100-103)TI1 (84-87)Updating...
connected with : NaN
molecule tags Photosynthesis
source organism Chlamydomonas reinhardtii
publication title An Atypical Haem in the Cytochrome B6F Complex
pubmed doi rcsb
molecule keywords Apocytochrome f
total genus 22
structure length 126
sequence length 127
ec nomenclature ec 7.1.1.6: Plastoquinol--plastocyanin reductase.
pdb deposition date 2003-08-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1q90C00
1SQVE 3GCEA 2D2CD 3GB4A 4QUQA 5KLIC 1O7MA 4AIVA 4EMJB 3L73E 2ZYLA 2BMRA 4HM7A 3TGUE 1BE3E 2QPZA 3FOUA 1VF5D 4OGQD 2QJPC 2E74D 2BCCE 5HL4A 1SJGA 1G8JB 2A06E 3GZYA 1NYKA 2E76D 4NBBD 2NVGA 1PP9E 1NTZE 3L74E 2CKFA 3L75E 4HM8A 4NBGD 4NBCD 1RIEA 3EQQA 2HMLA 2HMOA 3D89A 2BMQA 2FYNC 4H44D 4NBAD 5CXMA 2B24A 1VCKA 1O7PA 3BCCE 2QJYC 4QDFA 2GBXA 3VMID 5AEUA 3H1JE 2GBWA 2XSOA 5KKZC 2NVEA 2XRXA 3VMGD 2NUKA 4HM6A 3C0DA 4QDDA 2I7FA 4HM2A 3CWBE 3H1KE 3H1LE 1O7NA 2NVFA 3EN1A 1O7GA 5BOKA 2HMJA 4H0LD 2DE5D 1RFSA 2IBZE 4P1CH 3CX5E 5KLVE 2YVJB 2HMKA 1P84E 3GTEA 4QDCA 1NU1E 3GKEA 2YFIA 4HJLA 3AZCA 4HM0A 4PV1D 1G8KB 1Q90C 4NBHD 4QCKA 2NWFA 2XSHA 1UUWA 4HM4A 4U3FE 1SQBE 4P1BH 1EZVE 2E4PA 4AAYB 2DE6D 2HMNA 1NTKE 1SQPE 4NB9D 3GZXA 2BMOA 4HM3A 1ULJA 2B1XA 1JM1A 1L0NE 1VM9A 3DQYA 4QUPA 4PD4E 1NDOA 1NTME 1WQLA 1SQQE 3L71E 4NBDD 3H1IE 2ZT9D 4QDFB 1FQTA 1KYOE 2DE7D 4HKVA 3GTSA 3VMHD 1O7WA 2FYUE 1O7HA 4NB8D 2HMMA 4NBED 3VCAA 5AEWA 3GOBA 1KB9E 2QJKC 4HM1A 2JZAA 3L70E 3N0QA 2YFJA 1L0LE 1ZRTE 2YIUC 1PPJE 1BCCE 1ULIA 2E4QA 2XR8A 2JO6A 2Q3WA 2YFLA 1UUVA 4NBFD 4QURA 2NUMA 4H13D 2E75D 1SQXE 3H1HE 3L72E 3GL2A 3VCPA 1EG9A 4HM5A 3GL0A 3CXHE
chains in the Genus database with same CATH superfamily
1SQVE 3GCEA 2D2CD 3GB4A 4QUQA 5KLIC 1O7MA 4AIVA 4EMJB 3L73E 2ZYLA 2BMRA 4HM7A 3TGUE 1BE3E 2QPZA 3FOUA 1VF5D 4OGQD 2QJPC 2E74D 2BCCE 5HL4A 1SJGA 1G8JB 2A06E 3GZYA 1NYKA 2E76D 4NBBD 2NVGA 1PP9E 1NTZE 3L74E 2CKFA 3L75E 4HM8A 4NBGD 4NBCD 1RIEA 3EQQA 2HMLA 2HMOA 3D89A 2BMQA 2FYNC 4H44D 4NBAD 5CXMA 2B24A 1VCKA 1O7PA 3BCCE 2QJYC 4QDFA 2GBXA 3VMID 5AEUA 3H1JE 2GBWA 2XSOA 5KKZC 2NVEA 2XRXA 3VMGD 2NUKA 4HM6A 3C0DA 4QDDA 2I7FA 4HM2A 3CWBE 3H1KE 3H1LE 1O7NA 2NVFA 3EN1A 1O7GA 5BOKA 2HMJA 4H0LD 2DE5D 1RFSA 2IBZE 4P1CH 3CX5E 5KLVE 2YVJB 2HMKA 1P84E 3GTEA 4QDCA 1NU1E 3GKEA 2YFIA 4HJLA 3AZCA 4HM0A 4PV1D 1G8KB 1Q90C 4NBHD 4QCKA 2NWFA 2XSHA 1UUWA 4HM4A 4U3FE 1SQBE 4P1BH 1EZVE 2E4PA 4AAYB 2DE6D 2HMNA 1NTKE 1SQPE 4NB9D 3GZXA 2BMOA 4HM3A 1ULJA 2B1XA 1JM1A 1L0NE 1VM9A 3DQYA 4QUPA 4PD4E 1NDOA 1NTME 1WQLA 1SQQE 3L71E 4NBDD 3H1IE 2ZT9D 4QDFB 1FQTA 1KYOE 2DE7D 4HKVA 3GTSA 3VMHD 1O7WA 2FYUE 1O7HA 4NB8D 2HMMA 4NBED 3VCAA 5AEWA 3GOBA 1KB9E 2QJKC 4HM1A 2JZAA 3L70E 3N0QA 2YFJA 1L0LE 1ZRTE 2YIUC 1PPJE 1BCCE 1ULIA 2E4QA 2XR8A 2JO6A 2Q3WA 2YFLA 1UUVA 4NBFD 4QURA 2NUMA 4H13D 2E75D 1SQXE 3H1HE 3L72E 3GL2A 3VCPA 1EG9A 4HM5A 3GL0A 3CXHE
chains in the Genus database with same CATH topology
1SQVE 3GCEA 2D2CD 3GB4A 4QUQA 5KLIC 1O7MA 4AIVA 4EMJB 3L73E 2ZYLA 2BMRA 4HM7A 3TGUE 1BE3E 2QPZA 3FOUA 1VF5D 4OGQD 2QJPC 2E74D 2BCCE 5HL4A 1SJGA 1G8JB 2A06E 3GZYA 1NYKA 2E76D 4NBBD 2NVGA 1PP9E 1NTZE 3L74E 2CKFA 3L75E 4HM8A 4NBGD 4NBCD 1RIEA 3EQQA 2HMLA 2HMOA 3D89A 2BMQA 2FYNC 4H44D 4NBAD 5CXMA 2B24A 1VCKA 1O7PA 3BCCE 2QJYC 4QDFA 2GBXA 3VMID 5AEUA 3H1JE 2GBWA 2XSOA 5KKZC 2NVEA 2XRXA 3VMGD 2NUKA 4HM6A 3C0DA 4QDDA 2I7FA 4HM2A 3CWBE 3H1KE 3H1LE 1O7NA 2NVFA 3EN1A 1O7GA 5BOKA 2HMJA 4H0LD 2DE5D 1RFSA 2IBZE 4P1CH 3CX5E 5KLVE 2YVJB 2HMKA 1P84E 3GTEA 4QDCA 1NU1E 3GKEA 2YFIA 4HJLA 3AZCA 4HM0A 4PV1D 1G8KB 1Q90C 4NBHD 4QCKA 2NWFA 2XSHA 1UUWA 4HM4A 4U3FE 1SQBE 4P1BH 1EZVE 2E4PA 4AAYB 2DE6D 2HMNA 1NTKE 1SQPE 4NB9D 3GZXA 2BMOA 4HM3A 1ULJA 2B1XA 1JM1A 1L0NE 1VM9A 3DQYA 4QUPA 4PD4E 1NDOA 1NTME 1WQLA 1SQQE 3L71E 4NBDD 3H1IE 2ZT9D 4QDFB 1FQTA 1KYOE 2DE7D 4HKVA 3GTSA 3VMHD 1O7WA 2FYUE 1O7HA 4NB8D 2HMMA 4NBED 3VCAA 5AEWA 3GOBA 1KB9E 2QJKC 4HM1A 2JZAA 3L70E 3N0QA 2YFJA 1L0LE 1ZRTE 2YIUC 1PPJE 1BCCE 1ULIA 2E4QA 2XR8A 2JO6A 2Q3WA 2YFLA 1UUVA 4NBFD 4QURA 2NUMA 4H13D 2E75D 1SQXE 3H1HE 3L72E 3GL2A 3VCPA 1EG9A 4HM5A 3GL0A 3CXHE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SQV E;  3GCE A;  2D2C D;  3GB4 A;  4QUQ A;  5KLI C;  1O7M A;  4AIV A;  4EMJ B;  3L73 E;  2ZYL A;  2BMR A;  4HM7 A;  3TGU E;  1BE3 E;  2QPZ A;  3FOU A;  1VF5 D;  4OGQ D;  2QJP C;  2E74 D;  2BCC E;  5HL4 A;  1SJG A;  1G8J B;  2A06 E;  3GZY A;  1NYK A;  2E76 D;  4NBB D;  2NVG A;  1PP9 E;  1NTZ E;  3L74 E;  2CKF A;  3L75 E;  4HM8 A;  4NBG D;  4NBC D;  1RIE A;  3EQQ A;  2HML A;  2HMO A;  3D89 A;  2BMQ A;  2FYN C;  4H44 D;  4NBA D;  5CXM A;  2B24 A;  1VCK A;  1O7P A;  3BCC E;  2QJY C;  4QDF A;  2GBX A;  3VMI D;  5AEU A;  3H1J E;  2GBW A;  2XSO A;  5KKZ C;  2NVE A;  2XRX A;  3VMG D;  2NUK A;  4HM6 A;  3C0D A;  4QDD A;  2I7F A;  4HM2 A;  3CWB E;  3H1K E;  3H1L E;  1O7N A;  2NVF A;  3EN1 A;  1O7G A;  5BOK A;  2HMJ A;  4H0L D;  2DE5 D;  1RFS A;  2IBZ E;  4P1C H;  3CX5 E;  5KLV E;  2YVJ B;  2HMK A;  1P84 E;  3GTE A;  4QDC A;  1NU1 E;  3GKE A;  2YFI A;  4HJL A;  3AZC A;  4HM0 A;  4PV1 D;  1G8K B;  1Q90 C;  4NBH D;  4QCK A;  2NWF A;  2XSH A;  1UUW A;  4HM4 A;  4U3F E;  1SQB E;  4P1B H;  1EZV E;  2E4P A;  4AAY B;  2DE6 D;  2HMN A;  1NTK E;  1SQP E;  4NB9 D;  3GZX A;  2BMO A;  4HM3 A;  1ULJ A;  2B1X A;  1JM1 A;  1L0N E;  1VM9 A;  3DQY A;  4QUP A;  4PD4 E;  1NDO A;  1NTM E;  1WQL A;  1SQQ E;  3L71 E;  4NBD D;  3H1I E;  2ZT9 D;  4QDF B;  1FQT A;  1KYO E;  2DE7 D;  4HKV A;  3GTS A;  3VMH D;  1O7W A;  2FYU E;  1O7H A;  4NB8 D;  2HMM A;  4NBE D;  3VCA A;  5AEW A;  3GOB A;  1KB9 E;  2QJK C;  4HM1 A;  2JZA A;  3L70 E;  3N0Q A;  2YFJ A;  1L0L E;  1ZRT E;  2YIU C;  1PPJ E;  1BCC E;  1ULI A;  2E4Q A;  2XR8 A;  2JO6 A;  2Q3W A;  2YFL A;  1UUV A;  4NBF D;  4QUR A;  2NUM A;  4H13 D;  2E75 D;  1SQX E;  3H1H E;  3L72 E;  3GL2 A;  3VCP A;  1EG9 A;  4HM5 A;  3GL0 A;  3CXH E; 
#chains in the Genus database with same CATH topology
 1SQV E;  3GCE A;  2D2C D;  3GB4 A;  4QUQ A;  5KLI C;  1O7M A;  4AIV A;  4EMJ B;  3L73 E;  2ZYL A;  2BMR A;  4HM7 A;  3TGU E;  1BE3 E;  2QPZ A;  3FOU A;  1VF5 D;  4OGQ D;  2QJP C;  2E74 D;  2BCC E;  5HL4 A;  1SJG A;  1G8J B;  2A06 E;  3GZY A;  1NYK A;  2E76 D;  4NBB D;  2NVG A;  1PP9 E;  1NTZ E;  3L74 E;  2CKF A;  3L75 E;  4HM8 A;  4NBG D;  4NBC D;  1RIE A;  3EQQ A;  2HML A;  2HMO A;  3D89 A;  2BMQ A;  2FYN C;  4H44 D;  4NBA D;  5CXM A;  2B24 A;  1VCK A;  1O7P A;  3BCC E;  2QJY C;  4QDF A;  2GBX A;  3VMI D;  5AEU A;  3H1J E;  2GBW A;  2XSO A;  5KKZ C;  2NVE A;  2XRX A;  3VMG D;  2NUK A;  4HM6 A;  3C0D A;  4QDD A;  2I7F A;  4HM2 A;  3CWB E;  3H1K E;  3H1L E;  1O7N A;  2NVF A;  3EN1 A;  1O7G A;  5BOK A;  2HMJ A;  4H0L D;  2DE5 D;  1RFS A;  2IBZ E;  4P1C H;  3CX5 E;  5KLV E;  2YVJ B;  2HMK A;  1P84 E;  3GTE A;  4QDC A;  1NU1 E;  3GKE A;  2YFI A;  4HJL A;  3AZC A;  4HM0 A;  4PV1 D;  1G8K B;  1Q90 C;  4NBH D;  4QCK A;  2NWF A;  2XSH A;  1UUW A;  4HM4 A;  4U3F E;  1SQB E;  4P1B H;  1EZV E;  2E4P A;  4AAY B;  2DE6 D;  2HMN A;  1NTK E;  1SQP E;  4NB9 D;  3GZX A;  2BMO A;  4HM3 A;  1ULJ A;  2B1X A;  1JM1 A;  1L0N E;  1VM9 A;  3DQY A;  4QUP A;  4PD4 E;  1NDO A;  1NTM E;  1WQL A;  1SQQ E;  3L71 E;  4NBD D;  3H1I E;  2ZT9 D;  4QDF B;  1FQT A;  1KYO E;  2DE7 D;  4HKV A;  3GTS A;  3VMH D;  1O7W A;  2FYU E;  1O7H A;  4NB8 D;  2HMM A;  4NBE D;  3VCA A;  5AEW A;  3GOB A;  1KB9 E;  2QJK C;  4HM1 A;  2JZA A;  3L70 E;  3N0Q A;  2YFJ A;  1L0L E;  1ZRT E;  2YIU C;  1PPJ E;  1BCC E;  1ULI A;  2E4Q A;  2XR8 A;  2JO6 A;  2Q3W A;  2YFL A;  1UUV A;  4NBF D;  4QUR A;  2NUM A;  4H13 D;  2E75 D;  1SQX E;  3H1H E;  3L72 E;  3GL2 A;  3VCP A;  1EG9 A;  4HM5 A;  3GL0 A;  3CXH E; 
#chains in the Genus database with same CATH homology
 1SQV E;  3GCE A;  2D2C D;  3GB4 A;  4QUQ A;  5KLI C;  1O7M A;  4AIV A;  4EMJ B;  3L73 E;  2ZYL A;  2BMR A;  4HM7 A;  3TGU E;  1BE3 E;  2QPZ A;  3FOU A;  1VF5 D;  4OGQ D;  2QJP C;  2E74 D;  2BCC E;  5HL4 A;  1SJG A;  1G8J B;  2A06 E;  3GZY A;  1NYK A;  2E76 D;  4NBB D;  2NVG A;  1PP9 E;  1NTZ E;  3L74 E;  2CKF A;  3L75 E;  4HM8 A;  4NBG D;  4NBC D;  1RIE A;  3EQQ A;  2HML A;  2HMO A;  3D89 A;  2BMQ A;  2FYN C;  4H44 D;  4NBA D;  5CXM A;  2B24 A;  1VCK A;  1O7P A;  3BCC E;  2QJY C;  4QDF A;  2GBX A;  3VMI D;  5AEU A;  3H1J E;  2GBW A;  2XSO A;  5KKZ C;  2NVE A;  2XRX A;  3VMG D;  2NUK A;  4HM6 A;  3C0D A;  4QDD A;  2I7F A;  4HM2 A;  3CWB E;  3H1K E;  3H1L E;  1O7N A;  2NVF A;  3EN1 A;  1O7G A;  5BOK A;  2HMJ A;  4H0L D;  2DE5 D;  1RFS A;  2IBZ E;  4P1C H;  3CX5 E;  5KLV E;  2YVJ B;  2HMK A;  1P84 E;  3GTE A;  4QDC A;  1NU1 E;  3GKE A;  2YFI A;  4HJL A;  3AZC A;  4HM0 A;  4PV1 D;  1G8K B;  1Q90 C;  4NBH D;  4QCK A;  2NWF A;  2XSH A;  1UUW A;  4HM4 A;  4U3F E;  1SQB E;  4P1B H;  1EZV E;  2E4P A;  4AAY B;  2DE6 D;  2HMN A;  1NTK E;  1SQP E;  4NB9 D;  3GZX A;  2BMO A;  4HM3 A;  1ULJ A;  2B1X A;  1JM1 A;  1L0N E;  1VM9 A;  3DQY A;  4QUP A;  4PD4 E;  1NDO A;  1NTM E;  1WQL A;  1SQQ E;  3L71 E;  4NBD D;  3H1I E;  2ZT9 D;  4QDF B;  1FQT A;  1KYO E;  2DE7 D;  4HKV A;  3GTS A;  3VMH D;  1O7W A;  2FYU E;  1O7H A;  4NB8 D;  2HMM A;  4NBE D;  3VCA A;  5AEW A;  3GOB A;  1KB9 E;  2QJK C;  4HM1 A;  2JZA A;  3L70 E;  3N0Q A;  2YFJ A;  1L0L E;  1ZRT E;  2YIU C;  1PPJ E;  1BCC E;  1ULI A;  2E4Q A;  2XR8 A;  2JO6 A;  2Q3W A;  2YFL A;  1UUV A;  4NBF D;  4QUR A;  2NUM A;  4H13 D;  2E75 D;  1SQX E;  3H1H E;  3L72 E;  3GL2 A;  3VCP A;  1EG9 A;  4HM5 A;  3GL0 A;  3CXH E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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