1ULIA

Biphenyl dioxygenase (bpha1a2) derived from rhodococcus sp. strain rha1
Total Genus 144
50100150200250300350400020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
144
sequence length
435
structure length
424
Chain Sequence
WADADIAELVDERTGRLDPRIYTDEALYEQELERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFLNQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADAPDLDTYLGEAKFYMDHMLDRTEAGTEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGILAGLPTEGIQYRATWGGHGSGFYIGDPNLLLAIMGPKVTEYWTQGPAAEKASERLGSTERGQQLMAQHMTIFPTCSFLPGINTIRAWHPRGPNEIEVWAFTVVDADAPEEMKEEYRQQTLRTFSAGGVFEQDDGENWVEIQQVLRGHKARSRPFNAEMGLGQTDSDNPDYPGTISYVYSEEAARGLYTQWVRMMTSPDWAALDATR
50100150200250300350400400300200100
020406080100120140Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Rhodococcus sp.
publication title Crystal Structure of the Terminal Oxygenase Component of Biphenyl Dioxygenase Derived from Rhodococcus sp. Strain RHA1
pubmed doi rcsb
molecule keywords biphenyl dioxygenase large subunit
total genus 144
structure length 424
sequence length 435
chains with identical sequence C, E
ec nomenclature ec 1.14.12.18: Biphenyl 2,3-dioxygenase.
pdb deposition date 2003-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1uliA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1uliA01
2YFLA 4HM4A 5CXMA 3TGUE 1PP9E 3D89A 2QJKC 4P1CH 3VMIA 2YFJA 1PPJE 2BMRA 4NBAD 1O7NA 3CX5E 2A06E 3CWBE 1O7GA 4QDFB 4NBEA 3DQYA 4QDCA 2HMLA 4PD4E 3VCPA 1RIEA 1VCKA 2BMQA 4NBBD 3GKQA 5KKZC 3GL2A 4NBCD 1SQBE 4EMJB 2I7FA 1NTZE 3BCCE 2DE6D 3L71E 4HM1A 2B1XA 1JM1A 5AEUA 3EQQA 3N0QA 3L72E 1BE3E 1O7PA 3L75E 1Z01A 2QPZA 2HMJA 3GL0A 4NBGD 2ZT9D 4AIVA 4NBDD 1NTME 4NBFD 3VMHD 1SQQE 2NVEA 2XR8A 1O7HA 4NBBA 4U3FE 2ZYLA 4NBCA 1RFSA 3L74E 2DE6A 1NU1E 3L70E 4AAYB 2NUKA 2DE7D 1O7MA 1P84E 4QCKA 2DE5D 5AEWA 3C0DA 4NBHD 1Z02A 2NVGA 3GTSA 1L0LE 1SQPE 4HM3A 4H44D 4HM2A 4NBFA 2NWFA 2NVFA 4H0LD 2QJYC 1SJGA 3GZYA 2GBWA 1VM9A 1NDOA 1SQXE 4NBAA 3L73E 4NB9D 1NYKA 3VMGD 1EG9A 4HM7A 1UUVA 4QUPA 5HL4A 2DE7A 2FYNC 2BMOA 1WW9A 4H13D 3EN1A 1G8JB 1Z03A 2E74D 3GTEA 5KLVE 3H1JE 1L0NE 2HMOA 4QURA 1G8KB 4P1BH 2HMKA 2BCCE 4QUQA 3H1LE 2YFIA 2JO6A 2GBXA 2YIUC 2XRXA 2NUMA 4HM0A 3H1HE 1KB9E 4PV1D 3H1IE 2YVJB 3GCFA 4NBGA 4NB8D 3H1KE 2B24A 1WQLA 2FYUE 4NBDA 1FQTA 1Q90C 2E75D 3GCEA 4NBED 5BOKA 3VMHA 3FOUA 4OGQD 1SQVE 4HM5A 3GB4A 2HMNA 2E4QA 1VF5D 2QJPC 2JZAA 1EZVE 2XSHA 3CXHE 1KYOE 4HJLA 4QDFA 2E76D 2DE5A 2XSOA 2D2CD 4NBHA 4NB8A 2E4PA 4HM8A 3VCAA 4HKVA 1ULIA 1O7WA 2CKFA 3VMID 5KLIC 1ZRTE 4QDDA 1BCCE 2HMMA 1ULJA 1NTKE 4NB9A 3VMGA 2Q3WA 3AZCA 4HM6A 3GKEA 3GOBA 2IBZE 1UUWA 3GZXA
chains in the Genus database with same CATH superfamily
2YFLA 4HM4A 5CXMA 3TGUE 1PP9E 3D89A 2QJKC 4P1CH 3VMIA 2YFJA 1PPJE 2BMRA 4NBAD 1O7NA 3CX5E 2A06E 3CWBE 1O7GA 4QDFB 4NBEA 3DQYA 4QDCA 2HMLA 4PD4E 3VCPA 1RIEA 1VCKA 2BMQA 4NBBD 3GKQA 5KKZC 3GL2A 4NBCD 1SQBE 4EMJB 2I7FA 1NTZE 3BCCE 2DE6D 3L71E 4HM1A 2B1XA 1JM1A 5AEUA 3EQQA 3N0QA 3L72E 1BE3E 1O7PA 3L75E 1Z01A 2QPZA 2HMJA 3GL0A 4NBGD 2ZT9D 4AIVA 4NBDD 1NTME 4NBFD 3VMHD 1SQQE 2NVEA 2XR8A 1O7HA 4NBBA 4U3FE 2ZYLA 4NBCA 1RFSA 3L74E 2DE6A 1NU1E 3L70E 4AAYB 2NUKA 2DE7D 1O7MA 1P84E 4QCKA 2DE5D 5AEWA 3C0DA 4NBHD 1Z02A 2NVGA 3GTSA 1L0LE 1SQPE 4HM3A 4H44D 4HM2A 4NBFA 2NWFA 2NVFA 4H0LD 2QJYC 1SJGA 3GZYA 2GBWA 1VM9A 1NDOA 1SQXE 4NBAA 3L73E 4NB9D 1NYKA 3VMGD 1EG9A 4HM7A 1UUVA 4QUPA 5HL4A 2DE7A 2FYNC 2BMOA 1WW9A 4H13D 3EN1A 1G8JB 1Z03A 2E74D 3GTEA 5KLVE 3H1JE 1L0NE 2HMOA 4QURA 1G8KB 4P1BH 2HMKA 2BCCE 4QUQA 3H1LE 2YFIA 2JO6A 2GBXA 2YIUC 2XRXA 2NUMA 4HM0A 3H1HE 1KB9E 4PV1D 3H1IE 2YVJB 3GCFA 4NBGA 4NB8D 3H1KE 2B24A 1WQLA 2FYUE 4NBDA 1FQTA 1Q90C 2E75D 3GCEA 4NBED 5BOKA 3VMHA 3FOUA 4OGQD 1SQVE 4HM5A 3GB4A 2HMNA 2E4QA 1VF5D 2QJPC 2JZAA 1EZVE 2XSHA 3CXHE 1KYOE 4HJLA 4QDFA 2E76D 2DE5A 2XSOA 2D2CD 4NBHA 4NB8A 2E4PA 4HM8A 3VCAA 4HKVA 1ULIA 1O7WA 2CKFA 3VMID 5KLIC 1ZRTE 4QDDA 1BCCE 2HMMA 1ULJA 1NTKE 4NB9A 3VMGA 2Q3WA 3AZCA 4HM6A 3GKEA 3GOBA 2IBZE 1UUWA 3GZXA
chains in the Genus database with same CATH topology
2YFLA 4HM4A 5CXMA 3TGUE 1PP9E 3D89A 2QJKC 4P1CH 3VMIA 2YFJA 1PPJE 2BMRA 4NBAD 1O7NA 3CX5E 2A06E 3CWBE 1O7GA 4QDFB 4NBEA 3DQYA 4QDCA 2HMLA 4PD4E 3VCPA 1RIEA 1VCKA 2BMQA 4NBBD 3GKQA 5KKZC 3GL2A 4NBCD 1SQBE 4EMJB 2I7FA 1NTZE 3BCCE 2DE6D 3L71E 4HM1A 2B1XA 1JM1A 5AEUA 3EQQA 3N0QA 3L72E 1BE3E 1O7PA 3L75E 1Z01A 2QPZA 2HMJA 3GL0A 4NBGD 2ZT9D 4AIVA 4NBDD 1NTME 4NBFD 3VMHD 1SQQE 2NVEA 2XR8A 1O7HA 4NBBA 4U3FE 2ZYLA 4NBCA 1RFSA 3L74E 2DE6A 1NU1E 3L70E 4AAYB 2NUKA 2DE7D 1O7MA 1P84E 4QCKA 2DE5D 5AEWA 3C0DA 4NBHD 1Z02A 2NVGA 3GTSA 1L0LE 1SQPE 4HM3A 4H44D 4HM2A 4NBFA 2NWFA 2NVFA 4H0LD 2QJYC 1SJGA 3GZYA 2GBWA 1VM9A 1NDOA 1SQXE 4NBAA 3L73E 4NB9D 1NYKA 3VMGD 1EG9A 4HM7A 1UUVA 4QUPA 5HL4A 2DE7A 2FYNC 2BMOA 1WW9A 4H13D 3EN1A 1G8JB 1Z03A 2E74D 3GTEA 5KLVE 3H1JE 1L0NE 2HMOA 4QURA 1G8KB 4P1BH 2HMKA 2BCCE 4QUQA 3H1LE 2YFIA 2JO6A 2GBXA 2YIUC 2XRXA 2NUMA 4HM0A 3H1HE 1KB9E 4PV1D 3H1IE 2YVJB 3GCFA 4NBGA 4NB8D 3H1KE 2B24A 1WQLA 2FYUE 4NBDA 1FQTA 1Q90C 2E75D 3GCEA 4NBED 5BOKA 3VMHA 3FOUA 4OGQD 1SQVE 4HM5A 3GB4A 2HMNA 2E4QA 1VF5D 2QJPC 2JZAA 1EZVE 2XSHA 3CXHE 1KYOE 4HJLA 4QDFA 2E76D 2DE5A 2XSOA 2D2CD 4NBHA 4NB8A 2E4PA 4HM8A 3VCAA 4HKVA 1ULIA 1O7WA 2CKFA 3VMID 5KLIC 1ZRTE 4QDDA 1BCCE 2HMMA 1ULJA 1NTKE 4NB9A 3VMGA 2Q3WA 3AZCA 4HM6A 3GKEA 3GOBA 2IBZE 1UUWA 3GZXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YFL A;  4HM4 A;  5CXM A;  3TGU E;  1PP9 E;  3D89 A;  2QJK C;  4P1C H;  3VMI A;  2YFJ A;  1PPJ E;  2BMR A;  4NBA D;  1O7N A;  3CX5 E;  2A06 E;  3CWB E;  1O7G A;  4QDF B;  4NBE A;  3DQY A;  4QDC A;  2HML A;  4PD4 E;  3VCP A;  1RIE A;  1VCK A;  2BMQ A;  4NBB D;  3GKQ A;  5KKZ C;  3GL2 A;  4NBC D;  1SQB E;  4EMJ B;  2I7F A;  1NTZ E;  3BCC E;  2DE6 D;  3L71 E;  4HM1 A;  2B1X A;  1JM1 A;  5AEU A;  3EQQ A;  3N0Q A;  3L72 E;  1BE3 E;  1O7P A;  3L75 E;  1Z01 A;  2QPZ A;  2HMJ A;  3GL0 A;  4NBG D;  2ZT9 D;  4AIV A;  4NBD D;  1NTM E;  4NBF D;  3VMH D;  1SQQ E;  2NVE A;  2XR8 A;  1O7H A;  4NBB A;  4U3F E;  2ZYL A;  4NBC A;  1RFS A;  3L74 E;  2DE6 A;  1NU1 E;  3L70 E;  4AAY B;  2NUK A;  2DE7 D;  1O7M A;  1P84 E;  4QCK A;  2DE5 D;  5AEW A;  3C0D A;  4NBH D;  1Z02 A;  2NVG A;  3GTS A;  1L0L E;  1SQP E;  4HM3 A;  4H44 D;  4HM2 A;  4NBF A;  2NWF A;  2NVF A;  4H0L D;  2QJY C;  1SJG A;  3GZY A;  2GBW A;  1VM9 A;  1NDO A;  1SQX E;  4NBA A;  3L73 E;  4NB9 D;  1NYK A;  3VMG D;  1EG9 A;  4HM7 A;  1UUV A;  4QUP A;  5HL4 A;  2DE7 A;  2FYN C;  2BMO A;  1WW9 A;  4H13 D;  3EN1 A;  1G8J B;  1Z03 A;  2E74 D;  3GTE A;  5KLV E;  3H1J E;  1L0N E;  2HMO A;  4QUR A;  1G8K B;  4P1B H;  2HMK A;  2BCC E;  4QUQ A;  3H1L E;  2YFI A;  2JO6 A;  2GBX A;  2YIU C;  2XRX A;  2NUM A;  4HM0 A;  3H1H E;  1KB9 E;  4PV1 D;  3H1I E;  2YVJ B;  3GCF A;  4NBG A;  4NB8 D;  3H1K E;  2B24 A;  1WQL A;  2FYU E;  4NBD A;  1FQT A;  1Q90 C;  2E75 D;  3GCE A;  4NBE D;  5BOK A;  3VMH A;  3FOU A;  4OGQ D;  1SQV E;  4HM5 A;  3GB4 A;  2HMN A;  2E4Q A;  1VF5 D;  2QJP C;  2JZA A;  1EZV E;  2XSH A;  3CXH E;  1KYO E;  4HJL A;  4QDF A;  2E76 D;  2DE5 A;  2XSO A;  2D2C D;  4NBH A;  4NB8 A;  2E4P A;  4HM8 A;  3VCA A;  4HKV A;  1ULI A;  1O7W A;  2CKF A;  3VMI D;  5KLI C;  1ZRT E;  4QDD A;  1BCC E;  2HMM A;  1ULJ A;  1NTK E;  4NB9 A;  3VMG A;  2Q3W A;  3AZC A;  4HM6 A;  3GKE A;  3GOB A;  2IBZ E;  1UUW A;  3GZX A; 
#chains in the Genus database with same CATH topology
 2YFL A;  4HM4 A;  5CXM A;  3TGU E;  1PP9 E;  3D89 A;  2QJK C;  4P1C H;  3VMI A;  2YFJ A;  1PPJ E;  2BMR A;  4NBA D;  1O7N A;  3CX5 E;  2A06 E;  3CWB E;  1O7G A;  4QDF B;  4NBE A;  3DQY A;  4QDC A;  2HML A;  4PD4 E;  3VCP A;  1RIE A;  1VCK A;  2BMQ A;  4NBB D;  3GKQ A;  5KKZ C;  3GL2 A;  4NBC D;  1SQB E;  4EMJ B;  2I7F A;  1NTZ E;  3BCC E;  2DE6 D;  3L71 E;  4HM1 A;  2B1X A;  1JM1 A;  5AEU A;  3EQQ A;  3N0Q A;  3L72 E;  1BE3 E;  1O7P A;  3L75 E;  1Z01 A;  2QPZ A;  2HMJ A;  3GL0 A;  4NBG D;  2ZT9 D;  4AIV A;  4NBD D;  1NTM E;  4NBF D;  3VMH D;  1SQQ E;  2NVE A;  2XR8 A;  1O7H A;  4NBB A;  4U3F E;  2ZYL A;  4NBC A;  1RFS A;  3L74 E;  2DE6 A;  1NU1 E;  3L70 E;  4AAY B;  2NUK A;  2DE7 D;  1O7M A;  1P84 E;  4QCK A;  2DE5 D;  5AEW A;  3C0D A;  4NBH D;  1Z02 A;  2NVG A;  3GTS A;  1L0L E;  1SQP E;  4HM3 A;  4H44 D;  4HM2 A;  4NBF A;  2NWF A;  2NVF A;  4H0L D;  2QJY C;  1SJG A;  3GZY A;  2GBW A;  1VM9 A;  1NDO A;  1SQX E;  4NBA A;  3L73 E;  4NB9 D;  1NYK A;  3VMG D;  1EG9 A;  4HM7 A;  1UUV A;  4QUP A;  5HL4 A;  2DE7 A;  2FYN C;  2BMO A;  1WW9 A;  4H13 D;  3EN1 A;  1G8J B;  1Z03 A;  2E74 D;  3GTE A;  5KLV E;  3H1J E;  1L0N E;  2HMO A;  4QUR A;  1G8K B;  4P1B H;  2HMK A;  2BCC E;  4QUQ A;  3H1L E;  2YFI A;  2JO6 A;  2GBX A;  2YIU C;  2XRX A;  2NUM A;  4HM0 A;  3H1H E;  1KB9 E;  4PV1 D;  3H1I E;  2YVJ B;  3GCF A;  4NBG A;  4NB8 D;  3H1K E;  2B24 A;  1WQL A;  2FYU E;  4NBD A;  1FQT A;  1Q90 C;  2E75 D;  3GCE A;  4NBE D;  5BOK A;  3VMH A;  3FOU A;  4OGQ D;  1SQV E;  4HM5 A;  3GB4 A;  2HMN A;  2E4Q A;  1VF5 D;  2QJP C;  2JZA A;  1EZV E;  2XSH A;  3CXH E;  1KYO E;  4HJL A;  4QDF A;  2E76 D;  2DE5 A;  2XSO A;  2D2C D;  4NBH A;  4NB8 A;  2E4P A;  4HM8 A;  3VCA A;  4HKV A;  1ULI A;  1O7W A;  2CKF A;  3VMI D;  5KLI C;  1ZRT E;  4QDD A;  1BCC E;  2HMM A;  1ULJ A;  1NTK E;  4NB9 A;  3VMG A;  2Q3W A;  3AZC A;  4HM6 A;  3GKE A;  3GOB A;  2IBZ E;  1UUW A;  3GZX A; 
#chains in the Genus database with same CATH homology
 2YFL A;  4HM4 A;  5CXM A;  3TGU E;  1PP9 E;  3D89 A;  2QJK C;  4P1C H;  3VMI A;  2YFJ A;  1PPJ E;  2BMR A;  4NBA D;  1O7N A;  3CX5 E;  2A06 E;  3CWB E;  1O7G A;  4QDF B;  4NBE A;  3DQY A;  4QDC A;  2HML A;  4PD4 E;  3VCP A;  1RIE A;  1VCK A;  2BMQ A;  4NBB D;  3GKQ A;  5KKZ C;  3GL2 A;  4NBC D;  1SQB E;  4EMJ B;  2I7F A;  1NTZ E;  3BCC E;  2DE6 D;  3L71 E;  4HM1 A;  2B1X A;  1JM1 A;  5AEU A;  3EQQ A;  3N0Q A;  3L72 E;  1BE3 E;  1O7P A;  3L75 E;  1Z01 A;  2QPZ A;  2HMJ A;  3GL0 A;  4NBG D;  2ZT9 D;  4AIV A;  4NBD D;  1NTM E;  4NBF D;  3VMH D;  1SQQ E;  2NVE A;  2XR8 A;  1O7H A;  4NBB A;  4U3F E;  2ZYL A;  4NBC A;  1RFS A;  3L74 E;  2DE6 A;  1NU1 E;  3L70 E;  4AAY B;  2NUK A;  2DE7 D;  1O7M A;  1P84 E;  4QCK A;  2DE5 D;  5AEW A;  3C0D A;  4NBH D;  1Z02 A;  2NVG A;  3GTS A;  1L0L E;  1SQP E;  4HM3 A;  4H44 D;  4HM2 A;  4NBF A;  2NWF A;  2NVF A;  4H0L D;  2QJY C;  1SJG A;  3GZY A;  2GBW A;  1VM9 A;  1NDO A;  1SQX E;  4NBA A;  3L73 E;  4NB9 D;  1NYK A;  3VMG D;  1EG9 A;  4HM7 A;  1UUV A;  4QUP A;  5HL4 A;  2DE7 A;  2FYN C;  2BMO A;  1WW9 A;  4H13 D;  3EN1 A;  1G8J B;  1Z03 A;  2E74 D;  3GTE A;  5KLV E;  3H1J E;  1L0N E;  2HMO A;  4QUR A;  1G8K B;  4P1B H;  2HMK A;  2BCC E;  4QUQ A;  3H1L E;  2YFI A;  2JO6 A;  2GBX A;  2YIU C;  2XRX A;  2NUM A;  4HM0 A;  3H1H E;  1KB9 E;  4PV1 D;  3H1I E;  2YVJ B;  3GCF A;  4NBG A;  4NB8 D;  3H1K E;  2B24 A;  1WQL A;  2FYU E;  4NBD A;  1FQT A;  1Q90 C;  2E75 D;  3GCE A;  4NBE D;  5BOK A;  3VMH A;  3FOU A;  4OGQ D;  1SQV E;  4HM5 A;  3GB4 A;  2HMN A;  2E4Q A;  1VF5 D;  2QJP C;  2JZA A;  1EZV E;  2XSH A;  3CXH E;  1KYO E;  4HJL A;  4QDF A;  2E76 D;  2DE5 A;  2XSO A;  2D2C D;  4NBH A;  4NB8 A;  2E4P A;  4HM8 A;  3VCA A;  4HKV A;  1ULI A;  1O7W A;  2CKF A;  3VMI D;  5KLI C;  1ZRT E;  4QDD A;  1BCC E;  2HMM A;  1ULJ A;  1NTK E;  4NB9 A;  3VMG A;  2Q3W A;  3AZC A;  4HM6 A;  3GKE A;  3GOB A;  2IBZ E;  1UUW A;  3GZX A; 
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