1ULJ | Genus

Total Genus 142

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	142
sequence length	435
structure length	425
Chain Sequence	WADADIAELVDERTGRLDPRIYTDEALYEQELERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFLNQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADAPDLDTYLGEAKFYMDHMLDRTEAGTEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGILAGLPPTEGIQYRATWGGHGSGFYIGDPNLLLAIMGPKVTEYWTQGPAAEKASERLGSTERGQQLMAQHMTIFPTCSFLPGINTIRAWHPRGPNEIEVWAFTVVDADAPEEMKEEYRQQTLRTFSAGGVFEQDDGENWVEIQQVLRGHKARSRPFNAEMGLGQTDSDNPDYPGTISYVYSEEAARGLYTQWVRMMTSPDWAALDATR

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase
source organism	Rhodococcus sp.
publication title	Crystal Structure of the Terminal Oxygenase Component of Biphenyl Dioxygenase Derived from Rhodococcus sp. Strain RHA1 pubmed doi rcsb
molecule keywords	biphenyl dioxygenase large subunit
total genus	142
structure length	425
sequence length	435
chains with identical sequence	C, E
ec nomenclature	ec 1.14.12.18: Biphenyl 2,3-dioxygenase.
pdb deposition date	2003-09-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00355	Rieske	Rieske [2Fe-2S] domain
A	PF00848	Ring_hydroxyl_A	Ring hydroxylating alpha subunit (catalytic domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	1uljA02
3.90.380.10	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1	Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1	1uljA01

3GZXA 3L71E 3H1LE 4QCKA 1WW9A 3FOUA 3EN1A 2DE6D 1VCKA 4QDFB 4P1BH 1L0LE 1O7HA 2QPZA 4HM0A 4HM4A 1P84E 2QJYC 2Q3WA 3GL2A 4P1CH 4NB9A 1ZRTE 4NBAD 1O7PA 3CXHE 3BCCE 1SQXE 3GKEA 5BOKA 2XSHA 4NBDD 2D2CD 3DQYA 2YFLA 1Z02A 2IBZE 4H0LD 1O7MA 2XR8A 4AIVA 4PD4E 4NBBA 2BCCE 3AZCA 3GB4A 2E4PA 2E76D 4HM5A 2HMNA 4HM7A 1KB9E 1WQLA 2BMQA 2HMMA 1L0NE 3D89A 4NBGD 4H13D 1VM9A 4NBFD 4QDFA 2HMJA 3CWBE 2HMKA 2ZYLA 5KKZC 3GL0A 2HMLA 1JM1A 3L75E 1KYOE 1Q90C 3C0DA 2JZAA 1ULIA 2HMOA 1UUWA 2A06E 2NWFA 3VMGA 5CXMA 1NTME 4NBED 2JO6A 5AEUA 3VMHA 3L72E 2E74D 3CX5E 2YFJA 2B1XA 2GBWA 2DE7A 3GTEA 1NTZE 2BMOA 1EG9A 4NB8A 3L73E 4NB9D 1Z01A 4NBCA 3VCAA 1O7NA 1NYKA 2GBXA 1BCCE 2FYUE 1FQTA 4HJLA 5AEWA 1SQPE 3VMID 2QJPC 2DE5D 2YVJB 3L74E 4NBGA 1SQBE 4NBFA 1UUVA 3H1KE 4QUPA 3GKQA 2DE6A 4HM1A 4NBBD 4NBHD 2XSOA 4HM3A 2NUMA 3GOBA 4OGQD 3EQQA 3N0QA 3H1HE 4EMJB 4NBAA 2NUKA 3GZYA 1SQVE 2I7FA 4PV1D 1O7GA 4QURA 1VF5D 4HM2A 4NBDA 3GTSA 4QUQA 1ULJA 2YIUC 4H44D 1EZVE 5HL4A 2E4QA 4HKVA 5KLVE 3GCEA 2QJKC 4HM8A 1BE3E 2CKFA 1NDOA 5KLIC 1O7WA 2NVEA 3VMGD 4HM6A 1NTKE 2NVGA 2YFIA 4QDDA 1PPJE 3L70E 3VMHD 2NVFA 2XRXA 1SJGA 2DE7D 4QDCA 1G8JB 3VMIA 1Z03A 2BMRA 3VCPA 2DE5A 1NU1E 1PP9E 3H1IE 4AAYB 2E75D 4NB8D 4NBHA 3GCFA 2B24A 2FYNC 1SQQE 4NBCD 2ZT9D 1RIEA 1G8KB 1RFSA 3H1JE 3TGUE 4NBEA 4U3FE
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3GZX A;  3L71 E;  3H1L E;  4QCK A;  1WW9 A;  3FOU A;  3EN1 A;  2DE6 D;  1VCK A;  4QDF B;  4P1B H;  1L0L E;  1O7H A;  2QPZ A;  4HM0 A;  4HM4 A;  1P84 E;  2QJY C;  2Q3W A;  3GL2 A;  4P1C H;  4NB9 A;  1ZRT E;  4NBA D;  1O7P A;  3CXH E;  3BCC E;  1SQX E;  3GKE A;  5BOK A;  2XSH A;  4NBD D;  2D2C D;  3DQY A;  2YFL A;  1Z02 A;  2IBZ E;  4H0L D;  1O7M A;  2XR8 A;  4AIV A;  4PD4 E;  4NBB A;  2BCC E;  3AZC A;  3GB4 A;  2E4P A;  2E76 D;  4HM5 A;  2HMN A;  4HM7 A;  1KB9 E;  1WQL A;  2BMQ A;  2HMM A;  1L0N E;  3D89 A;  4NBG D;  4H13 D;  1VM9 A;  4NBF D;  4QDF A;  2HMJ A;  3CWB E;  2HMK A;  2ZYL A;  5KKZ C;  3GL0 A;  2HML A;  1JM1 A;  3L75 E;  1KYO E;  1Q90 C;  3C0D A;  2JZA A;  1ULI A;  2HMO A;  1UUW A;  2A06 E;  2NWF A;  3VMG A;  5CXM A;  1NTM E;  4NBE D;  2JO6 A;  5AEU A;  3VMH A;  3L72 E;  2E74 D;  3CX5 E;  2YFJ A;  2B1X A;  2GBW A;  2DE7 A;  3GTE A;  1NTZ E;  2BMO A;  1EG9 A;  4NB8 A;  3L73 E;  4NB9 D;  1Z01 A;  4NBC A;  3VCA A;  1O7N A;  1NYK A;  2GBX A;  1BCC E;  2FYU E;  1FQT A;  4HJL A;  5AEW A;  1SQP E;  3VMI D;  2QJP C;  2DE5 D;  2YVJ B;  3L74 E;  4NBG A;  1SQB E;  4NBF A;  1UUV A;  3H1K E;  4QUP A;  3GKQ A;  2DE6 A;  4HM1 A;  4NBB D;  4NBH D;  2XSO A;  4HM3 A;  2NUM A;  3GOB A;  4OGQ D;  3EQQ A;  3N0Q A;  3H1H E;  4EMJ B;  4NBA A;  2NUK A;  3GZY A;  1SQV E;  2I7F A;  4PV1 D;  1O7G A;  4QUR A;  1VF5 D;  4HM2 A;  4NBD A;  3GTS A;  4QUQ A;  1ULJ A;  2YIU C;  4H44 D;  1EZV E;  5HL4 A;  2E4Q A;  4HKV A;  5KLV E;  3GCE A;  2QJK C;  4HM8 A;  1BE3 E;  2CKF A;  1NDO A;  5KLI C;  1O7W A;  2NVE A;  3VMG D;  4HM6 A;  1NTK E;  2NVG A;  2YFI A;  4QDD A;  1PPJ E;  3L70 E;  3VMH D;  2NVF A;  2XRX A;  1SJG A;  2DE7 D;  4QDC A;  1G8J B;  3VMI A;  1Z03 A;  2BMR A;  3VCP A;  2DE5 A;  1NU1 E;  1PP9 E;  3H1I E;  4AAY B;  2E75 D;  4NB8 D;  4NBH A;  3GCF A;  2B24 A;  2FYN C;  1SQQ E;  4NBC D;  2ZT9 D;  1RIE A;  1G8K B;  1RFS A;  3H1J E;  3TGU E;  4NBE A;  4U3F E; 
#chains in the Genus database with same CATH topology
 3GZX A;  3L71 E;  3H1L E;  4QCK A;  1WW9 A;  3FOU A;  3EN1 A;  2DE6 D;  1VCK A;  4QDF B;  4P1B H;  1L0L E;  1O7H A;  2QPZ A;  4HM0 A;  4HM4 A;  1P84 E;  2QJY C;  2Q3W A;  3GL2 A;  4P1C H;  4NB9 A;  1ZRT E;  4NBA D;  1O7P A;  3CXH E;  3BCC E;  1SQX E;  3GKE A;  5BOK A;  2XSH A;  4NBD D;  2D2C D;  3DQY A;  2YFL A;  1Z02 A;  2IBZ E;  4H0L D;  1O7M A;  2XR8 A;  4AIV A;  4PD4 E;  4NBB A;  2BCC E;  3AZC A;  3GB4 A;  2E4P A;  2E76 D;  4HM5 A;  2HMN A;  4HM7 A;  1KB9 E;  1WQL A;  2BMQ A;  2HMM A;  1L0N E;  3D89 A;  4NBG D;  4H13 D;  1VM9 A;  4NBF D;  4QDF A;  2HMJ A;  3CWB E;  2HMK A;  2ZYL A;  5KKZ C;  3GL0 A;  2HML A;  1JM1 A;  3L75 E;  1KYO E;  1Q90 C;  3C0D A;  2JZA A;  1ULI A;  2HMO A;  1UUW A;  2A06 E;  2NWF A;  3VMG A;  5CXM A;  1NTM E;  4NBE D;  2JO6 A;  5AEU A;  3VMH A;  3L72 E;  2E74 D;  3CX5 E;  2YFJ A;  2B1X A;  2GBW A;  2DE7 A;  3GTE A;  1NTZ E;  2BMO A;  1EG9 A;  4NB8 A;  3L73 E;  4NB9 D;  1Z01 A;  4NBC A;  3VCA A;  1O7N A;  1NYK A;  2GBX A;  1BCC E;  2FYU E;  1FQT A;  4HJL A;  5AEW A;  1SQP E;  3VMI D;  2QJP C;  2DE5 D;  2YVJ B;  3L74 E;  4NBG A;  1SQB E;  4NBF A;  1UUV A;  3H1K E;  4QUP A;  3GKQ A;  2DE6 A;  4HM1 A;  4NBB D;  4NBH D;  2XSO A;  4HM3 A;  2NUM A;  3GOB A;  4OGQ D;  3EQQ A;  3N0Q A;  3H1H E;  4EMJ B;  4NBA A;  2NUK A;  3GZY A;  1SQV E;  2I7F A;  4PV1 D;  1O7G A;  4QUR A;  1VF5 D;  4HM2 A;  4NBD A;  3GTS A;  4QUQ A;  1ULJ A;  2YIU C;  4H44 D;  1EZV E;  5HL4 A;  2E4Q A;  4HKV A;  5KLV E;  3GCE A;  2QJK C;  4HM8 A;  1BE3 E;  2CKF A;  1NDO A;  5KLI C;  1O7W A;  2NVE A;  3VMG D;  4HM6 A;  1NTK E;  2NVG A;  2YFI A;  4QDD A;  1PPJ E;  3L70 E;  3VMH D;  2NVF A;  2XRX A;  1SJG A;  2DE7 D;  4QDC A;  1G8J B;  3VMI A;  1Z03 A;  2BMR A;  3VCP A;  2DE5 A;  1NU1 E;  1PP9 E;  3H1I E;  4AAY B;  2E75 D;  4NB8 D;  4NBH A;  3GCF A;  2B24 A;  2FYN C;  1SQQ E;  4NBC D;  2ZT9 D;  1RIE A;  1G8K B;  1RFS A;  3H1J E;  3TGU E;  4NBE A;  4U3F E; 
#chains in the Genus database with same CATH homology
 3GZX A;  3L71 E;  3H1L E;  4QCK A;  1WW9 A;  3FOU A;  3EN1 A;  2DE6 D;  1VCK A;  4QDF B;  4P1B H;  1L0L E;  1O7H A;  2QPZ A;  4HM0 A;  4HM4 A;  1P84 E;  2QJY C;  2Q3W A;  3GL2 A;  4P1C H;  4NB9 A;  1ZRT E;  4NBA D;  1O7P A;  3CXH E;  3BCC E;  1SQX E;  3GKE A;  5BOK A;  2XSH A;  4NBD D;  2D2C D;  3DQY A;  2YFL A;  1Z02 A;  2IBZ E;  4H0L D;  1O7M A;  2XR8 A;  4AIV A;  4PD4 E;  4NBB A;  2BCC E;  3AZC A;  3GB4 A;  2E4P A;  2E76 D;  4HM5 A;  2HMN A;  4HM7 A;  1KB9 E;  1WQL A;  2BMQ A;  2HMM A;  1L0N E;  3D89 A;  4NBG D;  4H13 D;  1VM9 A;  4NBF D;  4QDF A;  2HMJ A;  3CWB E;  2HMK A;  2ZYL A;  5KKZ C;  3GL0 A;  2HML A;  1JM1 A;  3L75 E;  1KYO E;  1Q90 C;  3C0D A;  2JZA A;  1ULI A;  2HMO A;  1UUW A;  2A06 E;  2NWF A;  3VMG A;  5CXM A;  1NTM E;  4NBE D;  2JO6 A;  5AEU A;  3VMH A;  3L72 E;  2E74 D;  3CX5 E;  2YFJ A;  2B1X A;  2GBW A;  2DE7 A;  3GTE A;  1NTZ E;  2BMO A;  1EG9 A;  4NB8 A;  3L73 E;  4NB9 D;  1Z01 A;  4NBC A;  3VCA A;  1O7N A;  1NYK A;  2GBX A;  1BCC E;  2FYU E;  1FQT A;  4HJL A;  5AEW A;  1SQP E;  3VMI D;  2QJP C;  2DE5 D;  2YVJ B;  3L74 E;  4NBG A;  1SQB E;  4NBF A;  1UUV A;  3H1K E;  4QUP A;  3GKQ A;  2DE6 A;  4HM1 A;  4NBB D;  4NBH D;  2XSO A;  4HM3 A;  2NUM A;  3GOB A;  4OGQ D;  3EQQ A;  3N0Q A;  3H1H E;  4EMJ B;  4NBA A;  2NUK A;  3GZY A;  1SQV E;  2I7F A;  4PV1 D;  1O7G A;  4QUR A;  1VF5 D;  4HM2 A;  4NBD A;  3GTS A;  4QUQ A;  1ULJ A;  2YIU C;  4H44 D;  1EZV E;  5HL4 A;  2E4Q A;  4HKV A;  5KLV E;  3GCE A;  2QJK C;  4HM8 A;  1BE3 E;  2CKF A;  1NDO A;  5KLI C;  1O7W A;  2NVE A;  3VMG D;  4HM6 A;  1NTK E;  2NVG A;  2YFI A;  4QDD A;  1PPJ E;  3L70 E;  3VMH D;  2NVF A;  2XRX A;  1SJG A;  2DE7 D;  4QDC A;  1G8J B;  3VMI A;  1Z03 A;  2BMR A;  3VCP A;  2DE5 A;  1NU1 E;  1PP9 E;  3H1I E;  4AAY B;  2E75 D;  4NB8 D;  4NBH A;  3GCF A;  2B24 A;  2FYN C;  1SQQ E;  4NBC D;  2ZT9 D;  1RIE A;  1G8K B;  1RFS A;  3H1J E;  3TGU E;  4NBE A;  4U3F E;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1ULJA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations