1UUV | Genus

Total Genus 164

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	164
sequence length	447
structure length	447
Chain Sequence	MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase
source organism	Pseudomonas putida
publication title	No Binding to Naphthalene Dioxygenase. pubmed doi rcsb
molecule keywords	NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
total genus	164
structure length	447
sequence length	447
ec nomenclature	ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date	2004-01-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00355	Rieske	Rieske [2Fe-2S] domain
A	PF00848	Ring_hydroxyl_A	Ring hydroxylating alpha subunit (catalytic domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	1uuvA02
3.90.380.10	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1	Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1	1uuvA01

4NBBD 4QUPA 2NVGA 4NBED 3L72E 1KB9E 4QURA 4QDFA 1FQTA 1PPJE 3GL2A 2DE7D 4HM7A 2ZYLA 5KLIC 1O7HA 2QJYC 1L0NE 4NBDD 1WW9A 1UUWA 1NYKA 2XR8A 2DE5A 2YFIA 4P1BH 3VCPA 3EN1A 1G8JB 1RIEA 4HM4A 1Z03A 4NBCD 2NUKA 4HJLA 1SQVE 4HM8A 5AEUA 1SQXE 3GTEA 4NB8D 4QDCA 2A06E 4P1CH 2E4QA 2NWFA 3L71E 3L75E 3GOBA 1P84E 3BCCE 3CX5E 4NBEA 3TGUE 2BMRA 3H1LE 1RFSA 4HKVA 2HMJA 3EQQA 2GBXA 2NVFA 2BMOA 2XSHA 2NUMA 3GKEA 4NBFA 4AIVA 3VMID 1VF5D 2BMQA 4NBAD 1Z02A 1ULIA 3GB4A 3L73E 1NDOA 4H44D 4HM0A 2QJKC 3VMHD 4NBCA 3H1IE 2HMKA 4U3FE 2QJPC 4NB9D 4PD4E 4HM3A 4QUQA 2BCCE 2Q3WA 5CXMA 1JM1A 1SQPE 1Z01A 4HM6A 3VMGA 1EG9A 3GCEA 1BCCE 3H1JE 3GCFA 1ULJA 2B24A 4NBBA 2DE6D 2GBWA 2D2CD 5HL4A 3GKQA 4HM1A 4NBHD 4PV1D 4H13D 1BE3E 2FYNC 4NBGD 2DE7A 1NTME 4NBAA 1SJGA 1WQLA 2YFLA 4NBDA 2B1XA 3C0DA 2E76D 2CKFA 3GL0A 4QDDA 4NB9A 2DE5D 1VCKA 1SQBE 1O7WA 2YFJA 1NTKE 2XRXA 4EMJB 1L0LE 4AAYB 5BOKA 2HMOA 4QDFB 2ZT9D 4NB8A 3AZCA 1NTZE 2DE6A 3H1KE 2JZAA 3H1HE 1VM9A 3L70E 4NBHA 2HMLA 2E75D 3L74E 1PP9E 4H0LD 2HMMA 4NBGA 1Q90C 1NU1E 3VMIA 2E74D 1O7GA 4QCKA 4OGQD 4NBFD 2HMNA 5AEWA 4HM2A 2XSOA 2IBZE 3D89A 2NVEA 3GTSA 3VMHA 1O7MA 3DQYA 1UUVA 1O7PA 4HM5A 1EZVE 3FOUA 3GZYA 2YVJB 3N0QA 1O7NA 2FYUE 2JO6A 2I7FA 5KKZC 3CXHE 3GZXA 1SQQE 5KLVE 3VCAA 3VMGD 1ZRTE 3CWBE 2QPZA 1G8KB 2YIUC 1KYOE 2E4PA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4NBB D;  4QUP A;  2NVG A;  4NBE D;  3L72 E;  1KB9 E;  4QUR A;  4QDF A;  1FQT A;  1PPJ E;  3GL2 A;  2DE7 D;  4HM7 A;  2ZYL A;  5KLI C;  1O7H A;  2QJY C;  1L0N E;  4NBD D;  1WW9 A;  1UUW A;  1NYK A;  2XR8 A;  2DE5 A;  2YFI A;  4P1B H;  3VCP A;  3EN1 A;  1G8J B;  1RIE A;  4HM4 A;  1Z03 A;  4NBC D;  2NUK A;  4HJL A;  1SQV E;  4HM8 A;  5AEU A;  1SQX E;  3GTE A;  4NB8 D;  4QDC A;  2A06 E;  4P1C H;  2E4Q A;  2NWF A;  3L71 E;  3L75 E;  3GOB A;  1P84 E;  3BCC E;  3CX5 E;  4NBE A;  3TGU E;  2BMR A;  3H1L E;  1RFS A;  4HKV A;  2HMJ A;  3EQQ A;  2GBX A;  2NVF A;  2BMO A;  2XSH A;  2NUM A;  3GKE A;  4NBF A;  4AIV A;  3VMI D;  1VF5 D;  2BMQ A;  4NBA D;  1Z02 A;  1ULI A;  3GB4 A;  3L73 E;  1NDO A;  4H44 D;  4HM0 A;  2QJK C;  3VMH D;  4NBC A;  3H1I E;  2HMK A;  4U3F E;  2QJP C;  4NB9 D;  4PD4 E;  4HM3 A;  4QUQ A;  2BCC E;  2Q3W A;  5CXM A;  1JM1 A;  1SQP E;  1Z01 A;  4HM6 A;  3VMG A;  1EG9 A;  3GCE A;  1BCC E;  3H1J E;  3GCF A;  1ULJ A;  2B24 A;  4NBB A;  2DE6 D;  2GBW A;  2D2C D;  5HL4 A;  3GKQ A;  4HM1 A;  4NBH D;  4PV1 D;  4H13 D;  1BE3 E;  2FYN C;  4NBG D;  2DE7 A;  1NTM E;  4NBA A;  1SJG A;  1WQL A;  2YFL A;  4NBD A;  2B1X A;  3C0D A;  2E76 D;  2CKF A;  3GL0 A;  4QDD A;  4NB9 A;  2DE5 D;  1VCK A;  1SQB E;  1O7W A;  2YFJ A;  1NTK E;  2XRX A;  4EMJ B;  1L0L E;  4AAY B;  5BOK A;  2HMO A;  4QDF B;  2ZT9 D;  4NB8 A;  3AZC A;  1NTZ E;  2DE6 A;  3H1K E;  2JZA A;  3H1H E;  1VM9 A;  3L70 E;  4NBH A;  2HML A;  2E75 D;  3L74 E;  1PP9 E;  4H0L D;  2HMM A;  4NBG A;  1Q90 C;  1NU1 E;  3VMI A;  2E74 D;  1O7G A;  4QCK A;  4OGQ D;  4NBF D;  2HMN A;  5AEW A;  4HM2 A;  2XSO A;  2IBZ E;  3D89 A;  2NVE A;  3GTS A;  3VMH A;  1O7M A;  3DQY A;  1UUV A;  1O7P A;  4HM5 A;  1EZV E;  3FOU A;  3GZY A;  2YVJ B;  3N0Q A;  1O7N A;  2FYU E;  2JO6 A;  2I7F A;  5KKZ C;  3CXH E;  3GZX A;  1SQQ E;  5KLV E;  3VCA A;  3VMG D;  1ZRT E;  3CWB E;  2QPZ A;  1G8K B;  2YIU C;  1KYO E;  2E4P A; 
#chains in the Genus database with same CATH topology
 4NBB D;  4QUP A;  2NVG A;  4NBE D;  3L72 E;  1KB9 E;  4QUR A;  4QDF A;  1FQT A;  1PPJ E;  3GL2 A;  2DE7 D;  4HM7 A;  2ZYL A;  5KLI C;  1O7H A;  2QJY C;  1L0N E;  4NBD D;  1WW9 A;  1UUW A;  1NYK A;  2XR8 A;  2DE5 A;  2YFI A;  4P1B H;  3VCP A;  3EN1 A;  1G8J B;  1RIE A;  4HM4 A;  1Z03 A;  4NBC D;  2NUK A;  4HJL A;  1SQV E;  4HM8 A;  5AEU A;  1SQX E;  3GTE A;  4NB8 D;  4QDC A;  2A06 E;  4P1C H;  2E4Q A;  2NWF A;  3L71 E;  3L75 E;  3GOB A;  1P84 E;  3BCC E;  3CX5 E;  4NBE A;  3TGU E;  2BMR A;  3H1L E;  1RFS A;  4HKV A;  2HMJ A;  3EQQ A;  2GBX A;  2NVF A;  2BMO A;  2XSH A;  2NUM A;  3GKE A;  4NBF A;  4AIV A;  3VMI D;  1VF5 D;  2BMQ A;  4NBA D;  1Z02 A;  1ULI A;  3GB4 A;  3L73 E;  1NDO A;  4H44 D;  4HM0 A;  2QJK C;  3VMH D;  4NBC A;  3H1I E;  2HMK A;  4U3F E;  2QJP C;  4NB9 D;  4PD4 E;  4HM3 A;  4QUQ A;  2BCC E;  2Q3W A;  5CXM A;  1JM1 A;  1SQP E;  1Z01 A;  4HM6 A;  3VMG A;  1EG9 A;  3GCE A;  1BCC E;  3H1J E;  3GCF A;  1ULJ A;  2B24 A;  4NBB A;  2DE6 D;  2GBW A;  2D2C D;  5HL4 A;  3GKQ A;  4HM1 A;  4NBH D;  4PV1 D;  4H13 D;  1BE3 E;  2FYN C;  4NBG D;  2DE7 A;  1NTM E;  4NBA A;  1SJG A;  1WQL A;  2YFL A;  4NBD A;  2B1X A;  3C0D A;  2E76 D;  2CKF A;  3GL0 A;  4QDD A;  4NB9 A;  2DE5 D;  1VCK A;  1SQB E;  1O7W A;  2YFJ A;  1NTK E;  2XRX A;  4EMJ B;  1L0L E;  4AAY B;  5BOK A;  2HMO A;  4QDF B;  2ZT9 D;  4NB8 A;  3AZC A;  1NTZ E;  2DE6 A;  3H1K E;  2JZA A;  3H1H E;  1VM9 A;  3L70 E;  4NBH A;  2HML A;  2E75 D;  3L74 E;  1PP9 E;  4H0L D;  2HMM A;  4NBG A;  1Q90 C;  1NU1 E;  3VMI A;  2E74 D;  1O7G A;  4QCK A;  4OGQ D;  4NBF D;  2HMN A;  5AEW A;  4HM2 A;  2XSO A;  2IBZ E;  3D89 A;  2NVE A;  3GTS A;  3VMH A;  1O7M A;  3DQY A;  1UUV A;  1O7P A;  4HM5 A;  1EZV E;  3FOU A;  3GZY A;  2YVJ B;  3N0Q A;  1O7N A;  2FYU E;  2JO6 A;  2I7F A;  5KKZ C;  3CXH E;  3GZX A;  1SQQ E;  5KLV E;  3VCA A;  3VMG D;  1ZRT E;  3CWB E;  2QPZ A;  1G8K B;  2YIU C;  1KYO E;  2E4P A; 
#chains in the Genus database with same CATH homology
 4NBB D;  4QUP A;  2NVG A;  4NBE D;  3L72 E;  1KB9 E;  4QUR A;  4QDF A;  1FQT A;  1PPJ E;  3GL2 A;  2DE7 D;  4HM7 A;  2ZYL A;  5KLI C;  1O7H A;  2QJY C;  1L0N E;  4NBD D;  1WW9 A;  1UUW A;  1NYK A;  2XR8 A;  2DE5 A;  2YFI A;  4P1B H;  3VCP A;  3EN1 A;  1G8J B;  1RIE A;  4HM4 A;  1Z03 A;  4NBC D;  2NUK A;  4HJL A;  1SQV E;  4HM8 A;  5AEU A;  1SQX E;  3GTE A;  4NB8 D;  4QDC A;  2A06 E;  4P1C H;  2E4Q A;  2NWF A;  3L71 E;  3L75 E;  3GOB A;  1P84 E;  3BCC E;  3CX5 E;  4NBE A;  3TGU E;  2BMR A;  3H1L E;  1RFS A;  4HKV A;  2HMJ A;  3EQQ A;  2GBX A;  2NVF A;  2BMO A;  2XSH A;  2NUM A;  3GKE A;  4NBF A;  4AIV A;  3VMI D;  1VF5 D;  2BMQ A;  4NBA D;  1Z02 A;  1ULI A;  3GB4 A;  3L73 E;  1NDO A;  4H44 D;  4HM0 A;  2QJK C;  3VMH D;  4NBC A;  3H1I E;  2HMK A;  4U3F E;  2QJP C;  4NB9 D;  4PD4 E;  4HM3 A;  4QUQ A;  2BCC E;  2Q3W A;  5CXM A;  1JM1 A;  1SQP E;  1Z01 A;  4HM6 A;  3VMG A;  1EG9 A;  3GCE A;  1BCC E;  3H1J E;  3GCF A;  1ULJ A;  2B24 A;  4NBB A;  2DE6 D;  2GBW A;  2D2C D;  5HL4 A;  3GKQ A;  4HM1 A;  4NBH D;  4PV1 D;  4H13 D;  1BE3 E;  2FYN C;  4NBG D;  2DE7 A;  1NTM E;  4NBA A;  1SJG A;  1WQL A;  2YFL A;  4NBD A;  2B1X A;  3C0D A;  2E76 D;  2CKF A;  3GL0 A;  4QDD A;  4NB9 A;  2DE5 D;  1VCK A;  1SQB E;  1O7W A;  2YFJ A;  1NTK E;  2XRX A;  4EMJ B;  1L0L E;  4AAY B;  5BOK A;  2HMO A;  4QDF B;  2ZT9 D;  4NB8 A;  3AZC A;  1NTZ E;  2DE6 A;  3H1K E;  2JZA A;  3H1H E;  1VM9 A;  3L70 E;  4NBH A;  2HML A;  2E75 D;  3L74 E;  1PP9 E;  4H0L D;  2HMM A;  4NBG A;  1Q90 C;  1NU1 E;  3VMI A;  2E74 D;  1O7G A;  4QCK A;  4OGQ D;  4NBF D;  2HMN A;  5AEW A;  4HM2 A;  2XSO A;  2IBZ E;  3D89 A;  2NVE A;  3GTS A;  3VMH A;  1O7M A;  3DQY A;  1UUV A;  1O7P A;  4HM5 A;  1EZV E;  3FOU A;  3GZY A;  2YVJ B;  3N0Q A;  1O7N A;  2FYU E;  2JO6 A;  2I7F A;  5KKZ C;  3CXH E;  3GZX A;  1SQQ E;  5KLV E;  3VCA A;  3VMG D;  1ZRT E;  3CWB E;  2QPZ A;  1G8K B;  2YIU C;  1KYO E;  2E4P A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1UUVA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations