1VM9A

The x-ray structure of the cys84ala cys85ala double mutant of the [2fe-2s] ferredoxin subunit of toluene-4-monooxygenase from pseudomonas mendocina kr1
Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
109
structure length
109
Chain Sequence
SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGINPDDAALAEYPVEVKGDDIYVSTKGILPNKA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (22-25)S13 (97-100)S1 (4-8)3H1 (9-11)S3 (27-33)TII1 (13-16)S2 (16-21)3H2 (52-54)S9 (70-72)S11 (88-89)S4 (37-42)S6 (50-51)O1 (48-50)S5 (44-45)TIV1 (45-48)TIV3 (64-67)S8 (61-63)S7 (56-58)TIV2 (57-60)TI4 (65-68)TI6 (73-76)TI5 (72-75)S12 (91-94)TIV7 (93-96)TII2 (102-105)TI2 (33-36)S10 (78-80)TIV6 (81-84)Updating...
connected with : NaN
molecule tags Electron transport
source organism Pseudomonas mendocina
publication title Structure of T4moC, the Rieske-type ferredoxin component of toluene 4-monooxygenase.
pubmed doi rcsb
molecule keywords Toluene-4-monooxygenase system protein C
total genus 23
structure length 109
sequence length 109
ec nomenclature
pdb deposition date 2004-09-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1vm9A00
4HM7A 3VMID 5KLIC 1NDOA 4NBAD 3L70E 4H44D 1G8KB 1WQLA 2B24A 1EG9A 3D89A 4NBBD 2XR8A 2HMOA 1KYOE 2YVJB 4NBCD 1PPJE 2XSHA 3C0DA 4QDFA 4PD4E 1KB9E 2E75D 3GTEA 1ZRTE 4HM8A 2ZT9D 2JZAA 2QJKC 2E74D 5KLVE 2BCCE 3L72E 3DQYA 3L74E 3TGUE 3VMGD 4EMJB 5KKZC 1SJGA 1UUWA 1L0LE 1BE3E 1O7NA 3EN1A 3FOUA 4P1BH 4QDCA 4QUPA 3VCAA 3VMHD 4HJLA 4HM0A 4QDDA 2NVEA 1RIEA 4NBHD 1O7WA 4QDFB 2XSOA 4NB9D 3BCCE 3CWBE 4NB8D 5CXMA 2A06E 1G8JB 2Q3WA 2BMOA 1L0NE 2ZYLA 3CXHE 3GOBA 1EZVE 4HM2A 2QPZA 4HKVA 1O7PA 2NVFA 2DE6D 2BMRA 4QCKA 4AIVA 2CKFA 4NBFD 4QURA 5HL4A 1NTZE 3CX5E 1UUVA 3H1LE 1SQPE 3H1KE 4NBGD 4NBED 4HM3A 4HM6A 2B1XA 1NYKA 1VM9A 2QJYC 3GL0A 2IBZE 2BMQA 2NUKA 3H1IE 3H1JE 4H13D 1O7GA 2HMJA 2HMKA 2E4PA 2HMMA 2I7FA 3GCEA 1VF5D 2JO6A 2YFJA 1NTKE 4HM1A 2YFIA 2GBXA 1ULIA 2NVGA 1SQVE 2XRXA 4NBDD 3GB4A 1SQBE 3N0QA 4P1CH 3GZXA 1PP9E 4PV1D 2QJPC 2FYNC 1Q90C 2NUMA 1O7MA 4HM5A 2YIUC 1NTME 2E4QA 1SQQE 3AZCA 4OGQD 1NU1E 1RFSA 1JM1A 4QUQA 1BCCE 4AAYB 1O7HA 5BOKA 5AEWA 3GTSA 2E76D 2YFLA 1VCKA 3L71E 1P84E 3L75E 3GL2A 4H0LD 4U3FE 5AEUA 4HM4A 1SQXE 2NWFA 2DE7D 2HMLA 3H1HE 2GBWA 1FQTA 3VCPA 2D2CD 3GZYA 3L73E 1ULJA 2HMNA 2DE5D 3EQQA 2FYUE 3GKEA
chains in the Genus database with same CATH superfamily
4HM7A 3VMID 5KLIC 1NDOA 4NBAD 3L70E 4H44D 1G8KB 1WQLA 2B24A 1EG9A 3D89A 4NBBD 2XR8A 2HMOA 1KYOE 2YVJB 4NBCD 1PPJE 2XSHA 3C0DA 4QDFA 4PD4E 1KB9E 2E75D 3GTEA 1ZRTE 4HM8A 2ZT9D 2JZAA 2QJKC 2E74D 5KLVE 2BCCE 3L72E 3DQYA 3L74E 3TGUE 3VMGD 4EMJB 5KKZC 1SJGA 1UUWA 1L0LE 1BE3E 1O7NA 3EN1A 3FOUA 4P1BH 4QDCA 4QUPA 3VCAA 3VMHD 4HJLA 4HM0A 4QDDA 2NVEA 1RIEA 4NBHD 1O7WA 4QDFB 2XSOA 4NB9D 3BCCE 3CWBE 4NB8D 5CXMA 2A06E 1G8JB 2Q3WA 2BMOA 1L0NE 2ZYLA 3CXHE 3GOBA 1EZVE 4HM2A 2QPZA 4HKVA 1O7PA 2NVFA 2DE6D 2BMRA 4QCKA 4AIVA 2CKFA 4NBFD 4QURA 5HL4A 1NTZE 3CX5E 1UUVA 3H1LE 1SQPE 3H1KE 4NBGD 4NBED 4HM3A 4HM6A 2B1XA 1NYKA 1VM9A 2QJYC 3GL0A 2IBZE 2BMQA 2NUKA 3H1IE 3H1JE 4H13D 1O7GA 2HMJA 2HMKA 2E4PA 2HMMA 2I7FA 3GCEA 1VF5D 2JO6A 2YFJA 1NTKE 4HM1A 2YFIA 2GBXA 1ULIA 2NVGA 1SQVE 2XRXA 4NBDD 3GB4A 1SQBE 3N0QA 4P1CH 3GZXA 1PP9E 4PV1D 2QJPC 2FYNC 1Q90C 2NUMA 1O7MA 4HM5A 2YIUC 1NTME 2E4QA 1SQQE 3AZCA 4OGQD 1NU1E 1RFSA 1JM1A 4QUQA 1BCCE 4AAYB 1O7HA 5BOKA 5AEWA 3GTSA 2E76D 2YFLA 1VCKA 3L71E 1P84E 3L75E 3GL2A 4H0LD 4U3FE 5AEUA 4HM4A 1SQXE 2NWFA 2DE7D 2HMLA 3H1HE 2GBWA 1FQTA 3VCPA 2D2CD 3GZYA 3L73E 1ULJA 2HMNA 2DE5D 3EQQA 2FYUE 3GKEA
chains in the Genus database with same CATH topology
4HM7A 3VMID 5KLIC 1NDOA 4NBAD 3L70E 4H44D 1G8KB 1WQLA 2B24A 1EG9A 3D89A 4NBBD 2XR8A 2HMOA 1KYOE 2YVJB 4NBCD 1PPJE 2XSHA 3C0DA 4QDFA 4PD4E 1KB9E 2E75D 3GTEA 1ZRTE 4HM8A 2ZT9D 2JZAA 2QJKC 2E74D 5KLVE 2BCCE 3L72E 3DQYA 3L74E 3TGUE 3VMGD 4EMJB 5KKZC 1SJGA 1UUWA 1L0LE 1BE3E 1O7NA 3EN1A 3FOUA 4P1BH 4QDCA 4QUPA 3VCAA 3VMHD 4HJLA 4HM0A 4QDDA 2NVEA 1RIEA 4NBHD 1O7WA 4QDFB 2XSOA 4NB9D 3BCCE 3CWBE 4NB8D 5CXMA 2A06E 1G8JB 2Q3WA 2BMOA 1L0NE 2ZYLA 3CXHE 3GOBA 1EZVE 4HM2A 2QPZA 4HKVA 1O7PA 2NVFA 2DE6D 2BMRA 4QCKA 4AIVA 2CKFA 4NBFD 4QURA 5HL4A 1NTZE 3CX5E 1UUVA 3H1LE 1SQPE 3H1KE 4NBGD 4NBED 4HM3A 4HM6A 2B1XA 1NYKA 1VM9A 2QJYC 3GL0A 2IBZE 2BMQA 2NUKA 3H1IE 3H1JE 4H13D 1O7GA 2HMJA 2HMKA 2E4PA 2HMMA 2I7FA 3GCEA 1VF5D 2JO6A 2YFJA 1NTKE 4HM1A 2YFIA 2GBXA 1ULIA 2NVGA 1SQVE 2XRXA 4NBDD 3GB4A 1SQBE 3N0QA 4P1CH 3GZXA 1PP9E 4PV1D 2QJPC 2FYNC 1Q90C 2NUMA 1O7MA 4HM5A 2YIUC 1NTME 2E4QA 1SQQE 3AZCA 4OGQD 1NU1E 1RFSA 1JM1A 4QUQA 1BCCE 4AAYB 1O7HA 5BOKA 5AEWA 3GTSA 2E76D 2YFLA 1VCKA 3L71E 1P84E 3L75E 3GL2A 4H0LD 4U3FE 5AEUA 4HM4A 1SQXE 2NWFA 2DE7D 2HMLA 3H1HE 2GBWA 1FQTA 3VCPA 2D2CD 3GZYA 3L73E 1ULJA 2HMNA 2DE5D 3EQQA 2FYUE 3GKEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HM7 A;  3VMI D;  5KLI C;  1NDO A;  4NBA D;  3L70 E;  4H44 D;  1G8K B;  1WQL A;  2B24 A;  1EG9 A;  3D89 A;  4NBB D;  2XR8 A;  2HMO A;  1KYO E;  2YVJ B;  4NBC D;  1PPJ E;  2XSH A;  3C0D A;  4QDF A;  4PD4 E;  1KB9 E;  2E75 D;  3GTE A;  1ZRT E;  4HM8 A;  2ZT9 D;  2JZA A;  2QJK C;  2E74 D;  5KLV E;  2BCC E;  3L72 E;  3DQY A;  3L74 E;  3TGU E;  3VMG D;  4EMJ B;  5KKZ C;  1SJG A;  1UUW A;  1L0L E;  1BE3 E;  1O7N A;  3EN1 A;  3FOU A;  4P1B H;  4QDC A;  4QUP A;  3VCA A;  3VMH D;  4HJL A;  4HM0 A;  4QDD A;  2NVE A;  1RIE A;  4NBH D;  1O7W A;  4QDF B;  2XSO A;  4NB9 D;  3BCC E;  3CWB E;  4NB8 D;  5CXM A;  2A06 E;  1G8J B;  2Q3W A;  2BMO A;  1L0N E;  2ZYL A;  3CXH E;  3GOB A;  1EZV E;  4HM2 A;  2QPZ A;  4HKV A;  1O7P A;  2NVF A;  2DE6 D;  2BMR A;  4QCK A;  4AIV A;  2CKF A;  4NBF D;  4QUR A;  5HL4 A;  1NTZ E;  3CX5 E;  1UUV A;  3H1L E;  1SQP E;  3H1K E;  4NBG D;  4NBE D;  4HM3 A;  4HM6 A;  2B1X A;  1NYK A;  1VM9 A;  2QJY C;  3GL0 A;  2IBZ E;  2BMQ A;  2NUK A;  3H1I E;  3H1J E;  4H13 D;  1O7G A;  2HMJ A;  2HMK A;  2E4P A;  2HMM A;  2I7F A;  3GCE A;  1VF5 D;  2JO6 A;  2YFJ A;  1NTK E;  4HM1 A;  2YFI A;  2GBX A;  1ULI A;  2NVG A;  1SQV E;  2XRX A;  4NBD D;  3GB4 A;  1SQB E;  3N0Q A;  4P1C H;  3GZX A;  1PP9 E;  4PV1 D;  2QJP C;  2FYN C;  1Q90 C;  2NUM A;  1O7M A;  4HM5 A;  2YIU C;  1NTM E;  2E4Q A;  1SQQ E;  3AZC A;  4OGQ D;  1NU1 E;  1RFS A;  1JM1 A;  4QUQ A;  1BCC E;  4AAY B;  1O7H A;  5BOK A;  5AEW A;  3GTS A;  2E76 D;  2YFL A;  1VCK A;  3L71 E;  1P84 E;  3L75 E;  3GL2 A;  4H0L D;  4U3F E;  5AEU A;  4HM4 A;  1SQX E;  2NWF A;  2DE7 D;  2HML A;  3H1H E;  2GBW A;  1FQT A;  3VCP A;  2D2C D;  3GZY A;  3L73 E;  1ULJ A;  2HMN A;  2DE5 D;  3EQQ A;  2FYU E;  3GKE A; 
#chains in the Genus database with same CATH topology
 4HM7 A;  3VMI D;  5KLI C;  1NDO A;  4NBA D;  3L70 E;  4H44 D;  1G8K B;  1WQL A;  2B24 A;  1EG9 A;  3D89 A;  4NBB D;  2XR8 A;  2HMO A;  1KYO E;  2YVJ B;  4NBC D;  1PPJ E;  2XSH A;  3C0D A;  4QDF A;  4PD4 E;  1KB9 E;  2E75 D;  3GTE A;  1ZRT E;  4HM8 A;  2ZT9 D;  2JZA A;  2QJK C;  2E74 D;  5KLV E;  2BCC E;  3L72 E;  3DQY A;  3L74 E;  3TGU E;  3VMG D;  4EMJ B;  5KKZ C;  1SJG A;  1UUW A;  1L0L E;  1BE3 E;  1O7N A;  3EN1 A;  3FOU A;  4P1B H;  4QDC A;  4QUP A;  3VCA A;  3VMH D;  4HJL A;  4HM0 A;  4QDD A;  2NVE A;  1RIE A;  4NBH D;  1O7W A;  4QDF B;  2XSO A;  4NB9 D;  3BCC E;  3CWB E;  4NB8 D;  5CXM A;  2A06 E;  1G8J B;  2Q3W A;  2BMO A;  1L0N E;  2ZYL A;  3CXH E;  3GOB A;  1EZV E;  4HM2 A;  2QPZ A;  4HKV A;  1O7P A;  2NVF A;  2DE6 D;  2BMR A;  4QCK A;  4AIV A;  2CKF A;  4NBF D;  4QUR A;  5HL4 A;  1NTZ E;  3CX5 E;  1UUV A;  3H1L E;  1SQP E;  3H1K E;  4NBG D;  4NBE D;  4HM3 A;  4HM6 A;  2B1X A;  1NYK A;  1VM9 A;  2QJY C;  3GL0 A;  2IBZ E;  2BMQ A;  2NUK A;  3H1I E;  3H1J E;  4H13 D;  1O7G A;  2HMJ A;  2HMK A;  2E4P A;  2HMM A;  2I7F A;  3GCE A;  1VF5 D;  2JO6 A;  2YFJ A;  1NTK E;  4HM1 A;  2YFI A;  2GBX A;  1ULI A;  2NVG A;  1SQV E;  2XRX A;  4NBD D;  3GB4 A;  1SQB E;  3N0Q A;  4P1C H;  3GZX A;  1PP9 E;  4PV1 D;  2QJP C;  2FYN C;  1Q90 C;  2NUM A;  1O7M A;  4HM5 A;  2YIU C;  1NTM E;  2E4Q A;  1SQQ E;  3AZC A;  4OGQ D;  1NU1 E;  1RFS A;  1JM1 A;  4QUQ A;  1BCC E;  4AAY B;  1O7H A;  5BOK A;  5AEW A;  3GTS A;  2E76 D;  2YFL A;  1VCK A;  3L71 E;  1P84 E;  3L75 E;  3GL2 A;  4H0L D;  4U3F E;  5AEU A;  4HM4 A;  1SQX E;  2NWF A;  2DE7 D;  2HML A;  3H1H E;  2GBW A;  1FQT A;  3VCP A;  2D2C D;  3GZY A;  3L73 E;  1ULJ A;  2HMN A;  2DE5 D;  3EQQ A;  2FYU E;  3GKE A; 
#chains in the Genus database with same CATH homology
 4HM7 A;  3VMI D;  5KLI C;  1NDO A;  4NBA D;  3L70 E;  4H44 D;  1G8K B;  1WQL A;  2B24 A;  1EG9 A;  3D89 A;  4NBB D;  2XR8 A;  2HMO A;  1KYO E;  2YVJ B;  4NBC D;  1PPJ E;  2XSH A;  3C0D A;  4QDF A;  4PD4 E;  1KB9 E;  2E75 D;  3GTE A;  1ZRT E;  4HM8 A;  2ZT9 D;  2JZA A;  2QJK C;  2E74 D;  5KLV E;  2BCC E;  3L72 E;  3DQY A;  3L74 E;  3TGU E;  3VMG D;  4EMJ B;  5KKZ C;  1SJG A;  1UUW A;  1L0L E;  1BE3 E;  1O7N A;  3EN1 A;  3FOU A;  4P1B H;  4QDC A;  4QUP A;  3VCA A;  3VMH D;  4HJL A;  4HM0 A;  4QDD A;  2NVE A;  1RIE A;  4NBH D;  1O7W A;  4QDF B;  2XSO A;  4NB9 D;  3BCC E;  3CWB E;  4NB8 D;  5CXM A;  2A06 E;  1G8J B;  2Q3W A;  2BMO A;  1L0N E;  2ZYL A;  3CXH E;  3GOB A;  1EZV E;  4HM2 A;  2QPZ A;  4HKV A;  1O7P A;  2NVF A;  2DE6 D;  2BMR A;  4QCK A;  4AIV A;  2CKF A;  4NBF D;  4QUR A;  5HL4 A;  1NTZ E;  3CX5 E;  1UUV A;  3H1L E;  1SQP E;  3H1K E;  4NBG D;  4NBE D;  4HM3 A;  4HM6 A;  2B1X A;  1NYK A;  1VM9 A;  2QJY C;  3GL0 A;  2IBZ E;  2BMQ A;  2NUK A;  3H1I E;  3H1J E;  4H13 D;  1O7G A;  2HMJ A;  2HMK A;  2E4P A;  2HMM A;  2I7F A;  3GCE A;  1VF5 D;  2JO6 A;  2YFJ A;  1NTK E;  4HM1 A;  2YFI A;  2GBX A;  1ULI A;  2NVG A;  1SQV E;  2XRX A;  4NBD D;  3GB4 A;  1SQB E;  3N0Q A;  4P1C H;  3GZX A;  1PP9 E;  4PV1 D;  2QJP C;  2FYN C;  1Q90 C;  2NUM A;  1O7M A;  4HM5 A;  2YIU C;  1NTM E;  2E4Q A;  1SQQ E;  3AZC A;  4OGQ D;  1NU1 E;  1RFS A;  1JM1 A;  4QUQ A;  1BCC E;  4AAY B;  1O7H A;  5BOK A;  5AEW A;  3GTS A;  2E76 D;  2YFL A;  1VCK A;  3L71 E;  1P84 E;  3L75 E;  3GL2 A;  4H0L D;  4U3F E;  5AEU A;  4HM4 A;  1SQX E;  2NWF A;  2DE7 D;  2HML A;  3H1H E;  2GBW A;  1FQT A;  3VCP A;  2D2C D;  3GZY A;  3L73 E;  1ULJ A;  2HMN A;  2DE5 D;  3EQQ A;  2FYU E;  3GKE A; 
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