1WQLA

Cumene dioxygenase (cuma1a2) from pseudomonas fluorescens ip01
Total Genus 144
50100150200250300350400020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
144
sequence length
441
structure length
436
Chain Sequence
NWSDEEIKALVDEEKGLLDPRIFSDQDLYEIELERVFARSWLLLGHEGHIPKAGDYLTTYMGEDPVIVVRQKDRSIKVFLNQCRHRGMRIERSDFGNAKSFTCTYHGWAYDTAGNLVNVPYEKEAFCDCGFDKADWGPLQARVDTYKGLIFANWDTEAPDLKTYLSDATPYMDVMLDRTEAVTQVITGMQKTVIPCNWKFAAEQFCSDMYHAGTMAHLSGVLSSLPPEMDLSQVKLPSSGNQFRAKWGGHGTGWFNDDFALLQAIMGPKVVDYWTKGPAAERAKERLGKVLPADRMVAQHMTIFPTCSFLPGINTVRTWHPRGPNEIEVWSFIVVDADAPEDIKEEYRRKNIFTFNQGGTYEQDDGENWVEVQRGLRGYKARSRPLCAQMGAGVPNKNNPEFPGKTSYVYSEEAARGFYHHWSRMMSEPSWDTLKS
50100150200250300350400400300200100
020406080100120140Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Pseudomonas fluorescens
publication title Crystal Structure of the Terminal Oxygenase Component of Cumene Dioxygenase from Pseudomonas fluorescens IP01
pubmed doi rcsb
molecule keywords iron-sulfur protein large subunit of cumene dioxygenase
total genus 144
structure length 436
sequence length 441
ec nomenclature ec 1.14.12.-:
pdb deposition date 2004-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1wqlA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1wqlA01
2BMOA 4NB9D 1L0LE 2YFJA 4NBBD 3C0DA 4HM2A 3GTSA 2Q3WA 2QJYC 1KB9E 2JO6A 2E4QA 3L71E 2DE5A 2NVEA 1G8KB 4HM4A 4PV1D 2XSOA 1SQPE 4HM5A 2E76D 2DE5D 2NVFA 3VMIA 1SQVE 2HMNA 1SQXE 1EZVE 1FQTA 1Q90C 2GBXA 2YFIA 3D89A 3DQYA 3VMID 1RIEA 1WQLA 4HM7A 2HMKA 2CKFA 4NBHA 1Z03A 2BMRA 2E74D 4NBHD 2IBZE 1BE3E 3GCEA 2XRXA 4NBFA 2HMLA 4NBAA 3L74E 3CX5E 3N0QA 2FYNC 4HM6A 4NBFD 4NBAD 4NB8A 3EN1A 3VCPA 2BMQA 2YVJB 4QURA 2DE7A 2ZT9D 3GZYA 3GCFA 4NB8D 3AZCA 4P1CH 1UUWA 5KLIC 2DE7D 2JZAA 1SJGA 4HJLA 1KYOE 4NBDA 2XR8A 4QDFB 3GB4A 4NBDD 3H1LE 1VF5D 1O7GA 1L0NE 3GL0A 2B1XA 1ZRTE 1O7HA 1Z02A 1ULJA 4EMJB 4H44D 4P1BH 3TGUE 4NBGA 4U3FE 3L73E 1RFSA 4QUPA 4NBGD 2DE6A 2HMMA 1O7MA 5KLVE 4HM1A 2NUKA 1WW9A 1SQQE 2BCCE 2DE6D 1BCCE 3L72E 3VCAA 2XSHA 1NTKE 3VMGA 2B24A 1PP9E 1ULIA 1SQBE 5AEUA 1P84E 3VMGD 3H1IE 1UUVA 1G8JB 2QJPC 1NDOA 3H1JE 4H0LD 5BOKA 3GZXA 2NUMA 4AIVA 3EQQA 3L70E 4NBCA 3GOBA 4PD4E 5HL4A 4AAYB 5KKZC 2E4PA 4HKVA 4NBCD 2ZYLA 4HM3A 3H1KE 4QDCA 4OGQD 4QUQA 2HMOA 2FYUE 1JM1A 2I7FA 3CXHE 3H1HE 2QJKC 1NU1E 3FOUA 4NBEA 3GL2A 3L75E 2A06E 4NBED 2D2CD 4QDDA 2YIUC 1NYKA 3BCCE 4HM8A 1O7PA 1VM9A 3GKEA 1NTZE 4QDFA 3GTEA 1O7WA 1PPJE 1Z01A 5AEWA 3CWBE 2HMJA 1NTME 2NVGA 2NWFA 3VMHA 1O7NA 4QCKA 1VCKA 2YFLA 5CXMA 3GKQA 2QPZA 4NB9A 4NBBA 4HM0A 3VMHD 2E75D 1EG9A 2GBWA 4H13D
chains in the Genus database with same CATH superfamily
2BMOA 4NB9D 1L0LE 2YFJA 4NBBD 3C0DA 4HM2A 3GTSA 2Q3WA 2QJYC 1KB9E 2JO6A 2E4QA 3L71E 2DE5A 2NVEA 1G8KB 4HM4A 4PV1D 2XSOA 1SQPE 4HM5A 2E76D 2DE5D 2NVFA 3VMIA 1SQVE 2HMNA 1SQXE 1EZVE 1FQTA 1Q90C 2GBXA 2YFIA 3D89A 3DQYA 3VMID 1RIEA 1WQLA 4HM7A 2HMKA 2CKFA 4NBHA 1Z03A 2BMRA 2E74D 4NBHD 2IBZE 1BE3E 3GCEA 2XRXA 4NBFA 2HMLA 4NBAA 3L74E 3CX5E 3N0QA 2FYNC 4HM6A 4NBFD 4NBAD 4NB8A 3EN1A 3VCPA 2BMQA 2YVJB 4QURA 2DE7A 2ZT9D 3GZYA 3GCFA 4NB8D 3AZCA 4P1CH 1UUWA 5KLIC 2DE7D 2JZAA 1SJGA 4HJLA 1KYOE 4NBDA 2XR8A 4QDFB 3GB4A 4NBDD 3H1LE 1VF5D 1O7GA 1L0NE 3GL0A 2B1XA 1ZRTE 1O7HA 1Z02A 1ULJA 4EMJB 4H44D 4P1BH 3TGUE 4NBGA 4U3FE 3L73E 1RFSA 4QUPA 4NBGD 2DE6A 2HMMA 1O7MA 5KLVE 4HM1A 2NUKA 1WW9A 1SQQE 2BCCE 2DE6D 1BCCE 3L72E 3VCAA 2XSHA 1NTKE 3VMGA 2B24A 1PP9E 1ULIA 1SQBE 5AEUA 1P84E 3VMGD 3H1IE 1UUVA 1G8JB 2QJPC 1NDOA 3H1JE 4H0LD 5BOKA 3GZXA 2NUMA 4AIVA 3EQQA 3L70E 4NBCA 3GOBA 4PD4E 5HL4A 4AAYB 5KKZC 2E4PA 4HKVA 4NBCD 2ZYLA 4HM3A 3H1KE 4QDCA 4OGQD 4QUQA 2HMOA 2FYUE 1JM1A 2I7FA 3CXHE 3H1HE 2QJKC 1NU1E 3FOUA 4NBEA 3GL2A 3L75E 2A06E 4NBED 2D2CD 4QDDA 2YIUC 1NYKA 3BCCE 4HM8A 1O7PA 1VM9A 3GKEA 1NTZE 4QDFA 3GTEA 1O7WA 1PPJE 1Z01A 5AEWA 3CWBE 2HMJA 1NTME 2NVGA 2NWFA 3VMHA 1O7NA 4QCKA 1VCKA 2YFLA 5CXMA 3GKQA 2QPZA 4NB9A 4NBBA 4HM0A 3VMHD 2E75D 1EG9A 2GBWA 4H13D
chains in the Genus database with same CATH topology
2BMOA 4NB9D 1L0LE 2YFJA 4NBBD 3C0DA 4HM2A 3GTSA 2Q3WA 2QJYC 1KB9E 2JO6A 2E4QA 3L71E 2DE5A 2NVEA 1G8KB 4HM4A 4PV1D 2XSOA 1SQPE 4HM5A 2E76D 2DE5D 2NVFA 3VMIA 1SQVE 2HMNA 1SQXE 1EZVE 1FQTA 1Q90C 2GBXA 2YFIA 3D89A 3DQYA 3VMID 1RIEA 1WQLA 4HM7A 2HMKA 2CKFA 4NBHA 1Z03A 2BMRA 2E74D 4NBHD 2IBZE 1BE3E 3GCEA 2XRXA 4NBFA 2HMLA 4NBAA 3L74E 3CX5E 3N0QA 2FYNC 4HM6A 4NBFD 4NBAD 4NB8A 3EN1A 3VCPA 2BMQA 2YVJB 4QURA 2DE7A 2ZT9D 3GZYA 3GCFA 4NB8D 3AZCA 4P1CH 1UUWA 5KLIC 2DE7D 2JZAA 1SJGA 4HJLA 1KYOE 4NBDA 2XR8A 4QDFB 3GB4A 4NBDD 3H1LE 1VF5D 1O7GA 1L0NE 3GL0A 2B1XA 1ZRTE 1O7HA 1Z02A 1ULJA 4EMJB 4H44D 4P1BH 3TGUE 4NBGA 4U3FE 3L73E 1RFSA 4QUPA 4NBGD 2DE6A 2HMMA 1O7MA 5KLVE 4HM1A 2NUKA 1WW9A 1SQQE 2BCCE 2DE6D 1BCCE 3L72E 3VCAA 2XSHA 1NTKE 3VMGA 2B24A 1PP9E 1ULIA 1SQBE 5AEUA 1P84E 3VMGD 3H1IE 1UUVA 1G8JB 2QJPC 1NDOA 3H1JE 4H0LD 5BOKA 3GZXA 2NUMA 4AIVA 3EQQA 3L70E 4NBCA 3GOBA 4PD4E 5HL4A 4AAYB 5KKZC 2E4PA 4HKVA 4NBCD 2ZYLA 4HM3A 3H1KE 4QDCA 4OGQD 4QUQA 2HMOA 2FYUE 1JM1A 2I7FA 3CXHE 3H1HE 2QJKC 1NU1E 3FOUA 4NBEA 3GL2A 3L75E 2A06E 4NBED 2D2CD 4QDDA 2YIUC 1NYKA 3BCCE 4HM8A 1O7PA 1VM9A 3GKEA 1NTZE 4QDFA 3GTEA 1O7WA 1PPJE 1Z01A 5AEWA 3CWBE 2HMJA 1NTME 2NVGA 2NWFA 3VMHA 1O7NA 4QCKA 1VCKA 2YFLA 5CXMA 3GKQA 2QPZA 4NB9A 4NBBA 4HM0A 3VMHD 2E75D 1EG9A 2GBWA 4H13D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BMO A;  4NB9 D;  1L0L E;  2YFJ A;  4NBB D;  3C0D A;  4HM2 A;  3GTS A;  2Q3W A;  2QJY C;  1KB9 E;  2JO6 A;  2E4Q A;  3L71 E;  2DE5 A;  2NVE A;  1G8K B;  4HM4 A;  4PV1 D;  2XSO A;  1SQP E;  4HM5 A;  2E76 D;  2DE5 D;  2NVF A;  3VMI A;  1SQV E;  2HMN A;  1SQX E;  1EZV E;  1FQT A;  1Q90 C;  2GBX A;  2YFI A;  3D89 A;  3DQY A;  3VMI D;  1RIE A;  1WQL A;  4HM7 A;  2HMK A;  2CKF A;  4NBH A;  1Z03 A;  2BMR A;  2E74 D;  4NBH D;  2IBZ E;  1BE3 E;  3GCE A;  2XRX A;  4NBF A;  2HML A;  4NBA A;  3L74 E;  3CX5 E;  3N0Q A;  2FYN C;  4HM6 A;  4NBF D;  4NBA D;  4NB8 A;  3EN1 A;  3VCP A;  2BMQ A;  2YVJ B;  4QUR A;  2DE7 A;  2ZT9 D;  3GZY A;  3GCF A;  4NB8 D;  3AZC A;  4P1C H;  1UUW A;  5KLI C;  2DE7 D;  2JZA A;  1SJG A;  4HJL A;  1KYO E;  4NBD A;  2XR8 A;  4QDF B;  3GB4 A;  4NBD D;  3H1L E;  1VF5 D;  1O7G A;  1L0N E;  3GL0 A;  2B1X A;  1ZRT E;  1O7H A;  1Z02 A;  1ULJ A;  4EMJ B;  4H44 D;  4P1B H;  3TGU E;  4NBG A;  4U3F E;  3L73 E;  1RFS A;  4QUP A;  4NBG D;  2DE6 A;  2HMM A;  1O7M A;  5KLV E;  4HM1 A;  2NUK A;  1WW9 A;  1SQQ E;  2BCC E;  2DE6 D;  1BCC E;  3L72 E;  3VCA A;  2XSH A;  1NTK E;  3VMG A;  2B24 A;  1PP9 E;  1ULI A;  1SQB E;  5AEU A;  1P84 E;  3VMG D;  3H1I E;  1UUV A;  1G8J B;  2QJP C;  1NDO A;  3H1J E;  4H0L D;  5BOK A;  3GZX A;  2NUM A;  4AIV A;  3EQQ A;  3L70 E;  4NBC A;  3GOB A;  4PD4 E;  5HL4 A;  4AAY B;  5KKZ C;  2E4P A;  4HKV A;  4NBC D;  2ZYL A;  4HM3 A;  3H1K E;  4QDC A;  4OGQ D;  4QUQ A;  2HMO A;  2FYU E;  1JM1 A;  2I7F A;  3CXH E;  3H1H E;  2QJK C;  1NU1 E;  3FOU A;  4NBE A;  3GL2 A;  3L75 E;  2A06 E;  4NBE D;  2D2C D;  4QDD A;  2YIU C;  1NYK A;  3BCC E;  4HM8 A;  1O7P A;  1VM9 A;  3GKE A;  1NTZ E;  4QDF A;  3GTE A;  1O7W A;  1PPJ E;  1Z01 A;  5AEW A;  3CWB E;  2HMJ A;  1NTM E;  2NVG A;  2NWF A;  3VMH A;  1O7N A;  4QCK A;  1VCK A;  2YFL A;  5CXM A;  3GKQ A;  2QPZ A;  4NB9 A;  4NBB A;  4HM0 A;  3VMH D;  2E75 D;  1EG9 A;  2GBW A;  4H13 D; 
#chains in the Genus database with same CATH topology
 2BMO A;  4NB9 D;  1L0L E;  2YFJ A;  4NBB D;  3C0D A;  4HM2 A;  3GTS A;  2Q3W A;  2QJY C;  1KB9 E;  2JO6 A;  2E4Q A;  3L71 E;  2DE5 A;  2NVE A;  1G8K B;  4HM4 A;  4PV1 D;  2XSO A;  1SQP E;  4HM5 A;  2E76 D;  2DE5 D;  2NVF A;  3VMI A;  1SQV E;  2HMN A;  1SQX E;  1EZV E;  1FQT A;  1Q90 C;  2GBX A;  2YFI A;  3D89 A;  3DQY A;  3VMI D;  1RIE A;  1WQL A;  4HM7 A;  2HMK A;  2CKF A;  4NBH A;  1Z03 A;  2BMR A;  2E74 D;  4NBH D;  2IBZ E;  1BE3 E;  3GCE A;  2XRX A;  4NBF A;  2HML A;  4NBA A;  3L74 E;  3CX5 E;  3N0Q A;  2FYN C;  4HM6 A;  4NBF D;  4NBA D;  4NB8 A;  3EN1 A;  3VCP A;  2BMQ A;  2YVJ B;  4QUR A;  2DE7 A;  2ZT9 D;  3GZY A;  3GCF A;  4NB8 D;  3AZC A;  4P1C H;  1UUW A;  5KLI C;  2DE7 D;  2JZA A;  1SJG A;  4HJL A;  1KYO E;  4NBD A;  2XR8 A;  4QDF B;  3GB4 A;  4NBD D;  3H1L E;  1VF5 D;  1O7G A;  1L0N E;  3GL0 A;  2B1X A;  1ZRT E;  1O7H A;  1Z02 A;  1ULJ A;  4EMJ B;  4H44 D;  4P1B H;  3TGU E;  4NBG A;  4U3F E;  3L73 E;  1RFS A;  4QUP A;  4NBG D;  2DE6 A;  2HMM A;  1O7M A;  5KLV E;  4HM1 A;  2NUK A;  1WW9 A;  1SQQ E;  2BCC E;  2DE6 D;  1BCC E;  3L72 E;  3VCA A;  2XSH A;  1NTK E;  3VMG A;  2B24 A;  1PP9 E;  1ULI A;  1SQB E;  5AEU A;  1P84 E;  3VMG D;  3H1I E;  1UUV A;  1G8J B;  2QJP C;  1NDO A;  3H1J E;  4H0L D;  5BOK A;  3GZX A;  2NUM A;  4AIV A;  3EQQ A;  3L70 E;  4NBC A;  3GOB A;  4PD4 E;  5HL4 A;  4AAY B;  5KKZ C;  2E4P A;  4HKV A;  4NBC D;  2ZYL A;  4HM3 A;  3H1K E;  4QDC A;  4OGQ D;  4QUQ A;  2HMO A;  2FYU E;  1JM1 A;  2I7F A;  3CXH E;  3H1H E;  2QJK C;  1NU1 E;  3FOU A;  4NBE A;  3GL2 A;  3L75 E;  2A06 E;  4NBE D;  2D2C D;  4QDD A;  2YIU C;  1NYK A;  3BCC E;  4HM8 A;  1O7P A;  1VM9 A;  3GKE A;  1NTZ E;  4QDF A;  3GTE A;  1O7W A;  1PPJ E;  1Z01 A;  5AEW A;  3CWB E;  2HMJ A;  1NTM E;  2NVG A;  2NWF A;  3VMH A;  1O7N A;  4QCK A;  1VCK A;  2YFL A;  5CXM A;  3GKQ A;  2QPZ A;  4NB9 A;  4NBB A;  4HM0 A;  3VMH D;  2E75 D;  1EG9 A;  2GBW A;  4H13 D; 
#chains in the Genus database with same CATH homology
 2BMO A;  4NB9 D;  1L0L E;  2YFJ A;  4NBB D;  3C0D A;  4HM2 A;  3GTS A;  2Q3W A;  2QJY C;  1KB9 E;  2JO6 A;  2E4Q A;  3L71 E;  2DE5 A;  2NVE A;  1G8K B;  4HM4 A;  4PV1 D;  2XSO A;  1SQP E;  4HM5 A;  2E76 D;  2DE5 D;  2NVF A;  3VMI A;  1SQV E;  2HMN A;  1SQX E;  1EZV E;  1FQT A;  1Q90 C;  2GBX A;  2YFI A;  3D89 A;  3DQY A;  3VMI D;  1RIE A;  1WQL A;  4HM7 A;  2HMK A;  2CKF A;  4NBH A;  1Z03 A;  2BMR A;  2E74 D;  4NBH D;  2IBZ E;  1BE3 E;  3GCE A;  2XRX A;  4NBF A;  2HML A;  4NBA A;  3L74 E;  3CX5 E;  3N0Q A;  2FYN C;  4HM6 A;  4NBF D;  4NBA D;  4NB8 A;  3EN1 A;  3VCP A;  2BMQ A;  2YVJ B;  4QUR A;  2DE7 A;  2ZT9 D;  3GZY A;  3GCF A;  4NB8 D;  3AZC A;  4P1C H;  1UUW A;  5KLI C;  2DE7 D;  2JZA A;  1SJG A;  4HJL A;  1KYO E;  4NBD A;  2XR8 A;  4QDF B;  3GB4 A;  4NBD D;  3H1L E;  1VF5 D;  1O7G A;  1L0N E;  3GL0 A;  2B1X A;  1ZRT E;  1O7H A;  1Z02 A;  1ULJ A;  4EMJ B;  4H44 D;  4P1B H;  3TGU E;  4NBG A;  4U3F E;  3L73 E;  1RFS A;  4QUP A;  4NBG D;  2DE6 A;  2HMM A;  1O7M A;  5KLV E;  4HM1 A;  2NUK A;  1WW9 A;  1SQQ E;  2BCC E;  2DE6 D;  1BCC E;  3L72 E;  3VCA A;  2XSH A;  1NTK E;  3VMG A;  2B24 A;  1PP9 E;  1ULI A;  1SQB E;  5AEU A;  1P84 E;  3VMG D;  3H1I E;  1UUV A;  1G8J B;  2QJP C;  1NDO A;  3H1J E;  4H0L D;  5BOK A;  3GZX A;  2NUM A;  4AIV A;  3EQQ A;  3L70 E;  4NBC A;  3GOB A;  4PD4 E;  5HL4 A;  4AAY B;  5KKZ C;  2E4P A;  4HKV A;  4NBC D;  2ZYL A;  4HM3 A;  3H1K E;  4QDC A;  4OGQ D;  4QUQ A;  2HMO A;  2FYU E;  1JM1 A;  2I7F A;  3CXH E;  3H1H E;  2QJK C;  1NU1 E;  3FOU A;  4NBE A;  3GL2 A;  3L75 E;  2A06 E;  4NBE D;  2D2C D;  4QDD A;  2YIU C;  1NYK A;  3BCC E;  4HM8 A;  1O7P A;  1VM9 A;  3GKE A;  1NTZ E;  4QDF A;  3GTE A;  1O7W A;  1PPJ E;  1Z01 A;  5AEW A;  3CWB E;  2HMJ A;  1NTM E;  2NVG A;  2NWF A;  3VMH A;  1O7N A;  4QCK A;  1VCK A;  2YFL A;  5CXM A;  3GKQ A;  2QPZ A;  4NB9 A;  4NBB A;  4HM0 A;  3VMH D;  2E75 D;  1EG9 A;  2GBW A;  4H13 D; 
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