2B1X | Genus

Total Genus 146

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	146
sequence length	441
structure length	441
Chain Sequence	MLSNELRQTLQKGLHDVNSDWTVPAAIINDPEVHDVERERIFGHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRGHLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPHADSLEDYLGDLKFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVELGLAPPDPQFALYGEHIHTGHGHGLGIIGPPPGMPLPEFMGLPENIVEELERRLTPEQVEIFRPTAFIHGTVFPNLSIGNFLMGKDHLSAPTAFLTLRLWHPLGPDKMEVMSFFLVEKDAPDWFKDESYKSYLRTFGISGGFEQDDAENWRSITRVMGGQFAKTGELNYQMGRGVLEPDPNWTGPGEAYPLDYAEANQRNFLEYWMQLMLAESPL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase
publication title	Structure and Increased Thermostability of Rhodococcus sp. Naphthalene 1,2-Dioxygenase. pubmed doi rcsb
molecule keywords	naphthalene dioxygenase large subunit
total genus	146
structure length	441
sequence length	441
chains with identical sequence	C, E
ec nomenclature	ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date	2005-09-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00355	Rieske	Rieske [2Fe-2S] domain
A	PF00848	Ring_hydroxyl_A	Ring hydroxylating alpha subunit (catalytic domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	2b1xA02
3.90.380.10	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1	Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1	2b1xA01

4H13D 4NBBD 1EG9A 1L0NE 3VCAA 3L72E 2B24A 4HKVA 4NBHD 5AEUA 1PP9E 2JZAA 2XR8A 3VMHA 2B1XA 2NVEA 3L75E 2DE7D 4NBFA 3L74E 1NYKA 2E4QA 4QURA 4NBED 1KYOE 2NVGA 1Z02A 4QDCA 2YFIA 3H1HE 2JO6A 1O7MA 2A06E 1SQVE 4NBGD 4U3FE 2YIUC 4NB9A 3H1JE 1KB9E 2FYUE 4P1BH 2D2CD 3GL0A 3VCPA 4HM2A 1SQQE 1O7NA 3VMID 2YVJB 2HMKA 2E4PA 4QCKA 5AEWA 5KLVE 2QJYC 3L70E 4HM1A 1NTKE 2QPZA 4HM0A 2DE5A 3GKQA 4HM5A 4QDFB 2DE6D 2IBZE 3VMGD 1WW9A 4NBCD 2NVFA 2XRXA 3GL2A 1VM9A 1EZVE 2XSHA 2CKFA 3D89A 2E76D 5HL4A 2BMRA 4HM6A 1UUWA 4NB8D 4NBBA 2HMOA 4AIVA 1O7PA 4NBHA 1SJGA 4P1CH 3CX5E 2E74D 5KLIC 4NBAD 2HMLA 2DE7A 2YFJA 1Z03A 2GBXA 4HM7A 4HM3A 4HM8A 5BOKA 4NBEA 1RIEA 1G8KB 3GB4A 3AZCA 2HMNA 1FQTA 1L0LE 2BMQA 3BCCE 5KKZC 3L71E 1SQBE 4NBGA 1BCCE 2FYNC 3GOBA 3DQYA 4NBDD 2NUKA 1PPJE 2ZT9D 2NUMA 3VMIA 3FOUA 4PD4E 1ULIA 2GBWA 4QDDA 4QUPA 4AAYB 3GTEA 2BCCE 2YFLA 2BMOA 1BE3E 4QDFA 3VMHD 3C0DA 3TGUE 1O7GA 2DE6A 3GCFA 1SQPE 3VMGA 1JM1A 4NBCA 4NBFD 1NTME 2E75D 3GCEA 1NDOA 1ZRTE 2NWFA 3N0QA 3GTSA 1O7HA 5CXMA 1P84E 2QJPC 2Q3WA 3EN1A 1VCKA 1G8JB 1WQLA 1UUVA 2QJKC 2XSOA 1O7WA 3CWBE 4NB9D 4NB8A 3GKEA 2HMMA 1RFSA 4H0LD 3H1IE 1Z01A 2ZYLA 4OGQD 3GZXA 1NU1E 4NBAA 1NTZE 3GZYA 1VF5D 2DE5D 4H44D 1ULJA 3CXHE 3H1KE 4HM4A 4EMJB 4QUQA 2HMJA 1SQXE 3EQQA 1Q90C 3L73E 2I7FA 4HJLA 4NBDA 4PV1D 3H1LE
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4H13 D;  4NBB D;  1EG9 A;  1L0N E;  3VCA A;  3L72 E;  2B24 A;  4HKV A;  4NBH D;  5AEU A;  1PP9 E;  2JZA A;  2XR8 A;  3VMH A;  2B1X A;  2NVE A;  3L75 E;  2DE7 D;  4NBF A;  3L74 E;  1NYK A;  2E4Q A;  4QUR A;  4NBE D;  1KYO E;  2NVG A;  1Z02 A;  4QDC A;  2YFI A;  3H1H E;  2JO6 A;  1O7M A;  2A06 E;  1SQV E;  4NBG D;  4U3F E;  2YIU C;  4NB9 A;  3H1J E;  1KB9 E;  2FYU E;  4P1B H;  2D2C D;  3GL0 A;  3VCP A;  4HM2 A;  1SQQ E;  1O7N A;  3VMI D;  2YVJ B;  2HMK A;  2E4P A;  4QCK A;  5AEW A;  5KLV E;  2QJY C;  3L70 E;  4HM1 A;  1NTK E;  2QPZ A;  4HM0 A;  2DE5 A;  3GKQ A;  4HM5 A;  4QDF B;  2DE6 D;  2IBZ E;  3VMG D;  1WW9 A;  4NBC D;  2NVF A;  2XRX A;  3GL2 A;  1VM9 A;  1EZV E;  2XSH A;  2CKF A;  3D89 A;  2E76 D;  5HL4 A;  2BMR A;  4HM6 A;  1UUW A;  4NB8 D;  4NBB A;  2HMO A;  4AIV A;  1O7P A;  4NBH A;  1SJG A;  4P1C H;  3CX5 E;  2E74 D;  5KLI C;  4NBA D;  2HML A;  2DE7 A;  2YFJ A;  1Z03 A;  2GBX A;  4HM7 A;  4HM3 A;  4HM8 A;  5BOK A;  4NBE A;  1RIE A;  1G8K B;  3GB4 A;  3AZC A;  2HMN A;  1FQT A;  1L0L E;  2BMQ A;  3BCC E;  5KKZ C;  3L71 E;  1SQB E;  4NBG A;  1BCC E;  2FYN C;  3GOB A;  3DQY A;  4NBD D;  2NUK A;  1PPJ E;  2ZT9 D;  2NUM A;  3VMI A;  3FOU A;  4PD4 E;  1ULI A;  2GBW A;  4QDD A;  4QUP A;  4AAY B;  3GTE A;  2BCC E;  2YFL A;  2BMO A;  1BE3 E;  4QDF A;  3VMH D;  3C0D A;  3TGU E;  1O7G A;  2DE6 A;  3GCF A;  1SQP E;  3VMG A;  1JM1 A;  4NBC A;  4NBF D;  1NTM E;  2E75 D;  3GCE A;  1NDO A;  1ZRT E;  2NWF A;  3N0Q A;  3GTS A;  1O7H A;  5CXM A;  1P84 E;  2QJP C;  2Q3W A;  3EN1 A;  1VCK A;  1G8J B;  1WQL A;  1UUV A;  2QJK C;  2XSO A;  1O7W A;  3CWB E;  4NB9 D;  4NB8 A;  3GKE A;  2HMM A;  1RFS A;  4H0L D;  3H1I E;  1Z01 A;  2ZYL A;  4OGQ D;  3GZX A;  1NU1 E;  4NBA A;  1NTZ E;  3GZY A;  1VF5 D;  2DE5 D;  4H44 D;  1ULJ A;  3CXH E;  3H1K E;  4HM4 A;  4EMJ B;  4QUQ A;  2HMJ A;  1SQX E;  3EQQ A;  1Q90 C;  3L73 E;  2I7F A;  4HJL A;  4NBD A;  4PV1 D;  3H1L E; 
#chains in the Genus database with same CATH topology
 4H13 D;  4NBB D;  1EG9 A;  1L0N E;  3VCA A;  3L72 E;  2B24 A;  4HKV A;  4NBH D;  5AEU A;  1PP9 E;  2JZA A;  2XR8 A;  3VMH A;  2B1X A;  2NVE A;  3L75 E;  2DE7 D;  4NBF A;  3L74 E;  1NYK A;  2E4Q A;  4QUR A;  4NBE D;  1KYO E;  2NVG A;  1Z02 A;  4QDC A;  2YFI A;  3H1H E;  2JO6 A;  1O7M A;  2A06 E;  1SQV E;  4NBG D;  4U3F E;  2YIU C;  4NB9 A;  3H1J E;  1KB9 E;  2FYU E;  4P1B H;  2D2C D;  3GL0 A;  3VCP A;  4HM2 A;  1SQQ E;  1O7N A;  3VMI D;  2YVJ B;  2HMK A;  2E4P A;  4QCK A;  5AEW A;  5KLV E;  2QJY C;  3L70 E;  4HM1 A;  1NTK E;  2QPZ A;  4HM0 A;  2DE5 A;  3GKQ A;  4HM5 A;  4QDF B;  2DE6 D;  2IBZ E;  3VMG D;  1WW9 A;  4NBC D;  2NVF A;  2XRX A;  3GL2 A;  1VM9 A;  1EZV E;  2XSH A;  2CKF A;  3D89 A;  2E76 D;  5HL4 A;  2BMR A;  4HM6 A;  1UUW A;  4NB8 D;  4NBB A;  2HMO A;  4AIV A;  1O7P A;  4NBH A;  1SJG A;  4P1C H;  3CX5 E;  2E74 D;  5KLI C;  4NBA D;  2HML A;  2DE7 A;  2YFJ A;  1Z03 A;  2GBX A;  4HM7 A;  4HM3 A;  4HM8 A;  5BOK A;  4NBE A;  1RIE A;  1G8K B;  3GB4 A;  3AZC A;  2HMN A;  1FQT A;  1L0L E;  2BMQ A;  3BCC E;  5KKZ C;  3L71 E;  1SQB E;  4NBG A;  1BCC E;  2FYN C;  3GOB A;  3DQY A;  4NBD D;  2NUK A;  1PPJ E;  2ZT9 D;  2NUM A;  3VMI A;  3FOU A;  4PD4 E;  1ULI A;  2GBW A;  4QDD A;  4QUP A;  4AAY B;  3GTE A;  2BCC E;  2YFL A;  2BMO A;  1BE3 E;  4QDF A;  3VMH D;  3C0D A;  3TGU E;  1O7G A;  2DE6 A;  3GCF A;  1SQP E;  3VMG A;  1JM1 A;  4NBC A;  4NBF D;  1NTM E;  2E75 D;  3GCE A;  1NDO A;  1ZRT E;  2NWF A;  3N0Q A;  3GTS A;  1O7H A;  5CXM A;  1P84 E;  2QJP C;  2Q3W A;  3EN1 A;  1VCK A;  1G8J B;  1WQL A;  1UUV A;  2QJK C;  2XSO A;  1O7W A;  3CWB E;  4NB9 D;  4NB8 A;  3GKE A;  2HMM A;  1RFS A;  4H0L D;  3H1I E;  1Z01 A;  2ZYL A;  4OGQ D;  3GZX A;  1NU1 E;  4NBA A;  1NTZ E;  3GZY A;  1VF5 D;  2DE5 D;  4H44 D;  1ULJ A;  3CXH E;  3H1K E;  4HM4 A;  4EMJ B;  4QUQ A;  2HMJ A;  1SQX E;  3EQQ A;  1Q90 C;  3L73 E;  2I7F A;  4HJL A;  4NBD A;  4PV1 D;  3H1L E; 
#chains in the Genus database with same CATH homology
 4H13 D;  4NBB D;  1EG9 A;  1L0N E;  3VCA A;  3L72 E;  2B24 A;  4HKV A;  4NBH D;  5AEU A;  1PP9 E;  2JZA A;  2XR8 A;  3VMH A;  2B1X A;  2NVE A;  3L75 E;  2DE7 D;  4NBF A;  3L74 E;  1NYK A;  2E4Q A;  4QUR A;  4NBE D;  1KYO E;  2NVG A;  1Z02 A;  4QDC A;  2YFI A;  3H1H E;  2JO6 A;  1O7M A;  2A06 E;  1SQV E;  4NBG D;  4U3F E;  2YIU C;  4NB9 A;  3H1J E;  1KB9 E;  2FYU E;  4P1B H;  2D2C D;  3GL0 A;  3VCP A;  4HM2 A;  1SQQ E;  1O7N A;  3VMI D;  2YVJ B;  2HMK A;  2E4P A;  4QCK A;  5AEW A;  5KLV E;  2QJY C;  3L70 E;  4HM1 A;  1NTK E;  2QPZ A;  4HM0 A;  2DE5 A;  3GKQ A;  4HM5 A;  4QDF B;  2DE6 D;  2IBZ E;  3VMG D;  1WW9 A;  4NBC D;  2NVF A;  2XRX A;  3GL2 A;  1VM9 A;  1EZV E;  2XSH A;  2CKF A;  3D89 A;  2E76 D;  5HL4 A;  2BMR A;  4HM6 A;  1UUW A;  4NB8 D;  4NBB A;  2HMO A;  4AIV A;  1O7P A;  4NBH A;  1SJG A;  4P1C H;  3CX5 E;  2E74 D;  5KLI C;  4NBA D;  2HML A;  2DE7 A;  2YFJ A;  1Z03 A;  2GBX A;  4HM7 A;  4HM3 A;  4HM8 A;  5BOK A;  4NBE A;  1RIE A;  1G8K B;  3GB4 A;  3AZC A;  2HMN A;  1FQT A;  1L0L E;  2BMQ A;  3BCC E;  5KKZ C;  3L71 E;  1SQB E;  4NBG A;  1BCC E;  2FYN C;  3GOB A;  3DQY A;  4NBD D;  2NUK A;  1PPJ E;  2ZT9 D;  2NUM A;  3VMI A;  3FOU A;  4PD4 E;  1ULI A;  2GBW A;  4QDD A;  4QUP A;  4AAY B;  3GTE A;  2BCC E;  2YFL A;  2BMO A;  1BE3 E;  4QDF A;  3VMH D;  3C0D A;  3TGU E;  1O7G A;  2DE6 A;  3GCF A;  1SQP E;  3VMG A;  1JM1 A;  4NBC A;  4NBF D;  1NTM E;  2E75 D;  3GCE A;  1NDO A;  1ZRT E;  2NWF A;  3N0Q A;  3GTS A;  1O7H A;  5CXM A;  1P84 E;  2QJP C;  2Q3W A;  3EN1 A;  1VCK A;  1G8J B;  1WQL A;  1UUV A;  2QJK C;  2XSO A;  1O7W A;  3CWB E;  4NB9 D;  4NB8 A;  3GKE A;  2HMM A;  1RFS A;  4H0L D;  3H1I E;  1Z01 A;  2ZYL A;  4OGQ D;  3GZX A;  1NU1 E;  4NBA A;  1NTZ E;  3GZY A;  1VF5 D;  2DE5 D;  4H44 D;  1ULJ A;  3CXH E;  3H1K E;  4HM4 A;  4EMJ B;  4QUQ A;  2HMJ A;  1SQX E;  3EQQ A;  1Q90 C;  3L73 E;  2I7F A;  4HJL A;  4NBD A;  4PV1 D;  3H1L E;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2B1XA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations