2BMQ | Genus

Total Genus 156

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	156
sequence length	437
structure length	437
Chain Sequence	YQNLVSEAGLTQKLLIHGDKELFQHELKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPPLIDYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRAGQSVFSSIAGNAKLPPEGAGLQMTSKYGSGMGVFWGYYSGNFSADMIPDLMAFGAAKQEKLAKEIGDVRARIYRSFLNGTIFPNNSFLTGSAAFRVWNPIDENTTEVWTYAFVEKDMPEDLKRRVADAVQRSIGPAGFWESDDNENMETMSQNGKKYQSSNIDQIASLGFGKDVYGDECYPGVVGKSAIGETSYRGFYRAYQAHISSSNWAEFENASRNWHI

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase
source organism	Comamonas sp.
publication title	Structural insight into the dioxygenation of nitroarene compounds: the crystal structure of nitrobenzene dioxygenase. pubmed doi rcsb
molecule keywords	OXYGENASE-ALPHA NBDO
total genus	156
structure length	437
sequence length	437
ec nomenclature
pdb deposition date	2005-03-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00355	Rieske	Rieske [2Fe-2S] domain
A	PF00848	Ring_hydroxyl_A	Ring hydroxylating alpha subunit (catalytic domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	2bmqA02
3.90.380.10	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1	Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1	2bmqA01

1Q90C 2B1XA 2IBZE 4QUQA 4NBEA 3GCEA 2DE6A 1UUVA 1NTME 3GOBA 1WQLA 4HM3A 1PPJE 4NB8A 4QCKA 2DE7A 2Q3WA 3GKQA 2XSOA 2YIUC 3H1HE 4NBFD 3L75E 1NTZE 3CXHE 3VCPA 4HKVA 2DE5D 4QDFB 2FYNC 1ULJA 4QUPA 2ZYLA 4NBHA 4AAYB 4PV1D 2ZT9D 1Z02A 2E4PA 4HM4A 2HMNA 3GZXA 2JO6A 2BCCE 2GBWA 1O7PA 5HL4A 4NBAD 1SQXE 1P84E 3L72E 3GTSA 4HM6A 1KYOE 1L0NE 1EZVE 4QDCA 1BCCE 2D2CD 2JZAA 4NBBA 2HMMA 5BOKA 1O7MA 5KKZC 3CWBE 4HJLA 4NBGD 4NBDD 2E4QA 1SJGA 4OGQD 4H0LD 3VMGA 3GKEA 1SQPE 2DE6D 4P1CH 1SQVE 1JM1A 2BMRA 1EG9A 2E75D 4HM5A 3N0QA 2NVFA 4H13D 2QJKC 2B24A 4NBFA 1G8JB 1Z01A 2A06E 5KLIC 3H1JE 4QDDA 5AEUA 1O7GA 1Z03A 2HMLA 2FYUE 1UUWA 1SQQE 4P1BH 1L0LE 1SQBE 4NB9D 3VCAA 3EN1A 5KLVE 2QPZA 2YFJA 3H1LE 4NBHD 3VMHD 1VF5D 2HMJA 3VMIA 4HM8A 1VCKA 2YFIA 1ZRTE 2XRXA 4NBCA 3GL2A 2BMQA 1PP9E 3GB4A 4NBED 4AIVA 2QJYC 3TGUE 4QURA 3BCCE 1VM9A 2NUKA 2YVJB 2DE7D 4NB8D 5AEWA 4NBGA 3DQYA 2NVGA 4QDFA 3L70E 3FOUA 3L73E 3AZCA 3VMGD 2NUMA 1O7WA 1RFSA 2E74D 4HM1A 2HMOA 3H1KE 4HM2A 2DE5A 2HMKA 2BMOA 2NVEA 4PD4E 3C0DA 5CXMA 2CKFA 2QJPC 4U3FE 3GCFA 1NU1E 2I7FA 1RIEA 1O7NA 2XR8A 3EQQA 4NBAA 3D89A 2GBXA 1BE3E 3CX5E 4NB9A 1FQTA 1ULIA 1G8KB 1O7HA 2E76D 4HM7A 3GL0A 3H1IE 4NBBD 3VMHA 4HM0A 3VMID 2NWFA 1NDOA 3L74E 1NTKE 4EMJB 2YFLA 3GZYA 4H44D 3GTEA 4NBCD 4NBDA 1WW9A 3L71E 1NYKA 1KB9E 2XSHA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1Q90 C;  2B1X A;  2IBZ E;  4QUQ A;  4NBE A;  3GCE A;  2DE6 A;  1UUV A;  1NTM E;  3GOB A;  1WQL A;  4HM3 A;  1PPJ E;  4NB8 A;  4QCK A;  2DE7 A;  2Q3W A;  3GKQ A;  2XSO A;  2YIU C;  3H1H E;  4NBF D;  3L75 E;  1NTZ E;  3CXH E;  3VCP A;  4HKV A;  2DE5 D;  4QDF B;  2FYN C;  1ULJ A;  4QUP A;  2ZYL A;  4NBH A;  4AAY B;  4PV1 D;  2ZT9 D;  1Z02 A;  2E4P A;  4HM4 A;  2HMN A;  3GZX A;  2JO6 A;  2BCC E;  2GBW A;  1O7P A;  5HL4 A;  4NBA D;  1SQX E;  1P84 E;  3L72 E;  3GTS A;  4HM6 A;  1KYO E;  1L0N E;  1EZV E;  4QDC A;  1BCC E;  2D2C D;  2JZA A;  4NBB A;  2HMM A;  5BOK A;  1O7M A;  5KKZ C;  3CWB E;  4HJL A;  4NBG D;  4NBD D;  2E4Q A;  1SJG A;  4OGQ D;  4H0L D;  3VMG A;  3GKE A;  1SQP E;  2DE6 D;  4P1C H;  1SQV E;  1JM1 A;  2BMR A;  1EG9 A;  2E75 D;  4HM5 A;  3N0Q A;  2NVF A;  4H13 D;  2QJK C;  2B24 A;  4NBF A;  1G8J B;  1Z01 A;  2A06 E;  5KLI C;  3H1J E;  4QDD A;  5AEU A;  1O7G A;  1Z03 A;  2HML A;  2FYU E;  1UUW A;  1SQQ E;  4P1B H;  1L0L E;  1SQB E;  4NB9 D;  3VCA A;  3EN1 A;  5KLV E;  2QPZ A;  2YFJ A;  3H1L E;  4NBH D;  3VMH D;  1VF5 D;  2HMJ A;  3VMI A;  4HM8 A;  1VCK A;  2YFI A;  1ZRT E;  2XRX A;  4NBC A;  3GL2 A;  2BMQ A;  1PP9 E;  3GB4 A;  4NBE D;  4AIV A;  2QJY C;  3TGU E;  4QUR A;  3BCC E;  1VM9 A;  2NUK A;  2YVJ B;  2DE7 D;  4NB8 D;  5AEW A;  4NBG A;  3DQY A;  2NVG A;  4QDF A;  3L70 E;  3FOU A;  3L73 E;  3AZC A;  3VMG D;  2NUM A;  1O7W A;  1RFS A;  2E74 D;  4HM1 A;  2HMO A;  3H1K E;  4HM2 A;  2DE5 A;  2HMK A;  2BMO A;  2NVE A;  4PD4 E;  3C0D A;  5CXM A;  2CKF A;  2QJP C;  4U3F E;  3GCF A;  1NU1 E;  2I7F A;  1RIE A;  1O7N A;  2XR8 A;  3EQQ A;  4NBA A;  3D89 A;  2GBX A;  1BE3 E;  3CX5 E;  4NB9 A;  1FQT A;  1ULI A;  1G8K B;  1O7H A;  2E76 D;  4HM7 A;  3GL0 A;  3H1I E;  4NBB D;  3VMH A;  4HM0 A;  3VMI D;  2NWF A;  1NDO A;  3L74 E;  1NTK E;  4EMJ B;  2YFL A;  3GZY A;  4H44 D;  3GTE A;  4NBC D;  4NBD A;  1WW9 A;  3L71 E;  1NYK A;  1KB9 E;  2XSH A; 
#chains in the Genus database with same CATH topology
 1Q90 C;  2B1X A;  2IBZ E;  4QUQ A;  4NBE A;  3GCE A;  2DE6 A;  1UUV A;  1NTM E;  3GOB A;  1WQL A;  4HM3 A;  1PPJ E;  4NB8 A;  4QCK A;  2DE7 A;  2Q3W A;  3GKQ A;  2XSO A;  2YIU C;  3H1H E;  4NBF D;  3L75 E;  1NTZ E;  3CXH E;  3VCP A;  4HKV A;  2DE5 D;  4QDF B;  2FYN C;  1ULJ A;  4QUP A;  2ZYL A;  4NBH A;  4AAY B;  4PV1 D;  2ZT9 D;  1Z02 A;  2E4P A;  4HM4 A;  2HMN A;  3GZX A;  2JO6 A;  2BCC E;  2GBW A;  1O7P A;  5HL4 A;  4NBA D;  1SQX E;  1P84 E;  3L72 E;  3GTS A;  4HM6 A;  1KYO E;  1L0N E;  1EZV E;  4QDC A;  1BCC E;  2D2C D;  2JZA A;  4NBB A;  2HMM A;  5BOK A;  1O7M A;  5KKZ C;  3CWB E;  4HJL A;  4NBG D;  4NBD D;  2E4Q A;  1SJG A;  4OGQ D;  4H0L D;  3VMG A;  3GKE A;  1SQP E;  2DE6 D;  4P1C H;  1SQV E;  1JM1 A;  2BMR A;  1EG9 A;  2E75 D;  4HM5 A;  3N0Q A;  2NVF A;  4H13 D;  2QJK C;  2B24 A;  4NBF A;  1G8J B;  1Z01 A;  2A06 E;  5KLI C;  3H1J E;  4QDD A;  5AEU A;  1O7G A;  1Z03 A;  2HML A;  2FYU E;  1UUW A;  1SQQ E;  4P1B H;  1L0L E;  1SQB E;  4NB9 D;  3VCA A;  3EN1 A;  5KLV E;  2QPZ A;  2YFJ A;  3H1L E;  4NBH D;  3VMH D;  1VF5 D;  2HMJ A;  3VMI A;  4HM8 A;  1VCK A;  2YFI A;  1ZRT E;  2XRX A;  4NBC A;  3GL2 A;  2BMQ A;  1PP9 E;  3GB4 A;  4NBE D;  4AIV A;  2QJY C;  3TGU E;  4QUR A;  3BCC E;  1VM9 A;  2NUK A;  2YVJ B;  2DE7 D;  4NB8 D;  5AEW A;  4NBG A;  3DQY A;  2NVG A;  4QDF A;  3L70 E;  3FOU A;  3L73 E;  3AZC A;  3VMG D;  2NUM A;  1O7W A;  1RFS A;  2E74 D;  4HM1 A;  2HMO A;  3H1K E;  4HM2 A;  2DE5 A;  2HMK A;  2BMO A;  2NVE A;  4PD4 E;  3C0D A;  5CXM A;  2CKF A;  2QJP C;  4U3F E;  3GCF A;  1NU1 E;  2I7F A;  1RIE A;  1O7N A;  2XR8 A;  3EQQ A;  4NBA A;  3D89 A;  2GBX A;  1BE3 E;  3CX5 E;  4NB9 A;  1FQT A;  1ULI A;  1G8K B;  1O7H A;  2E76 D;  4HM7 A;  3GL0 A;  3H1I E;  4NBB D;  3VMH A;  4HM0 A;  3VMI D;  2NWF A;  1NDO A;  3L74 E;  1NTK E;  4EMJ B;  2YFL A;  3GZY A;  4H44 D;  3GTE A;  4NBC D;  4NBD A;  1WW9 A;  3L71 E;  1NYK A;  1KB9 E;  2XSH A; 
#chains in the Genus database with same CATH homology
 1Q90 C;  2B1X A;  2IBZ E;  4QUQ A;  4NBE A;  3GCE A;  2DE6 A;  1UUV A;  1NTM E;  3GOB A;  1WQL A;  4HM3 A;  1PPJ E;  4NB8 A;  4QCK A;  2DE7 A;  2Q3W A;  3GKQ A;  2XSO A;  2YIU C;  3H1H E;  4NBF D;  3L75 E;  1NTZ E;  3CXH E;  3VCP A;  4HKV A;  2DE5 D;  4QDF B;  2FYN C;  1ULJ A;  4QUP A;  2ZYL A;  4NBH A;  4AAY B;  4PV1 D;  2ZT9 D;  1Z02 A;  2E4P A;  4HM4 A;  2HMN A;  3GZX A;  2JO6 A;  2BCC E;  2GBW A;  1O7P A;  5HL4 A;  4NBA D;  1SQX E;  1P84 E;  3L72 E;  3GTS A;  4HM6 A;  1KYO E;  1L0N E;  1EZV E;  4QDC A;  1BCC E;  2D2C D;  2JZA A;  4NBB A;  2HMM A;  5BOK A;  1O7M A;  5KKZ C;  3CWB E;  4HJL A;  4NBG D;  4NBD D;  2E4Q A;  1SJG A;  4OGQ D;  4H0L D;  3VMG A;  3GKE A;  1SQP E;  2DE6 D;  4P1C H;  1SQV E;  1JM1 A;  2BMR A;  1EG9 A;  2E75 D;  4HM5 A;  3N0Q A;  2NVF A;  4H13 D;  2QJK C;  2B24 A;  4NBF A;  1G8J B;  1Z01 A;  2A06 E;  5KLI C;  3H1J E;  4QDD A;  5AEU A;  1O7G A;  1Z03 A;  2HML A;  2FYU E;  1UUW A;  1SQQ E;  4P1B H;  1L0L E;  1SQB E;  4NB9 D;  3VCA A;  3EN1 A;  5KLV E;  2QPZ A;  2YFJ A;  3H1L E;  4NBH D;  3VMH D;  1VF5 D;  2HMJ A;  3VMI A;  4HM8 A;  1VCK A;  2YFI A;  1ZRT E;  2XRX A;  4NBC A;  3GL2 A;  2BMQ A;  1PP9 E;  3GB4 A;  4NBE D;  4AIV A;  2QJY C;  3TGU E;  4QUR A;  3BCC E;  1VM9 A;  2NUK A;  2YVJ B;  2DE7 D;  4NB8 D;  5AEW A;  4NBG A;  3DQY A;  2NVG A;  4QDF A;  3L70 E;  3FOU A;  3L73 E;  3AZC A;  3VMG D;  2NUM A;  1O7W A;  1RFS A;  2E74 D;  4HM1 A;  2HMO A;  3H1K E;  4HM2 A;  2DE5 A;  2HMK A;  2BMO A;  2NVE A;  4PD4 E;  3C0D A;  5CXM A;  2CKF A;  2QJP C;  4U3F E;  3GCF A;  1NU1 E;  2I7F A;  1RIE A;  1O7N A;  2XR8 A;  3EQQ A;  4NBA A;  3D89 A;  2GBX A;  1BE3 E;  3CX5 E;  4NB9 A;  1FQT A;  1ULI A;  1G8K B;  1O7H A;  2E76 D;  4HM7 A;  3GL0 A;  3H1I E;  4NBB D;  3VMH A;  4HM0 A;  3VMI D;  2NWF A;  1NDO A;  3L74 E;  1NTK E;  4EMJ B;  2YFL A;  3GZY A;  4H44 D;  3GTE A;  4NBC D;  4NBD A;  1WW9 A;  3L71 E;  1NYK A;  1KB9 E;  2XSH A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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2BMQA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations